Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/computeCoverage.xml @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
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--- a/SMART/galaxy/computeCoverage.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/computeCoverage.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,8 +1,5 @@
-<tool id="ComputeCoverage" name="compute coverage">
+<tool id="ComputeCoverage" name="Compute coverage">
     <description>Compute the coverage of a set with respect to another set.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
     <command interpreter="python">
         ../Java/Python/ComputeCoverage.py -i $formatType.inputFileName1
 		#if $formatType.FormatInputFileName1 == 'bed':
@@ -103,11 +100,8 @@
         </inputs>
 
 	<outputs>
-		<data name="outputFileGff" format="gff3" label="[compute coverage] output file"/>
+		<data name="outputFileGff" format="gff3" label="[computeCoverage] OUTPUT file"/>
 	</outputs> 
 	
-	<help>
-This tool considers a query and a reference files, and gives the coverage of the query file by the reference. The output file is similar to the query file, where a tag **coverage** has been added.
-	</help>
 </tool>