diff SMART/galaxy/coordinatesToSequence.xml @ 31:0ab839023fe4

Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
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--- a/SMART/galaxy/coordinatesToSequence.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/coordinatesToSequence.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,8 +1,5 @@
 <tool id="coordinatesToSequence" name="coordinates to sequence">
 	<description>Coordinates to Sequences: Extract the sequences from a list of coordinates.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
 	<command interpreter="python">
 		../Java/Python/coordinatesToSequence.py -i $formatType.inputFileName1
 		#if $formatType.FormatInputFileName1 == 'bed':
@@ -62,7 +59,4 @@
 		<data name="outputFileFasta" format="fasta" label="coordinates to sequences output"/>
 	</outputs> 
 	
-	<help>
-You can use this tool, if you just want to convert your mapping data to genomic coordinates, without any filtering. It requires a genomic coordinates file together with its format, an output format (GFF3, BED, etc...), the genome, and prints you the corresponding file.
-	</help>
 </tool>