Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/coordinatesToSequence.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
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--- a/SMART/galaxy/coordinatesToSequence.xml Mon Apr 29 03:45:52 2013 -0400 +++ b/SMART/galaxy/coordinatesToSequence.xml Tue Apr 30 14:33:21 2013 -0400 @@ -1,8 +1,5 @@ <tool id="coordinatesToSequence" name="coordinates to sequence"> <description>Coordinates to Sequences: Extract the sequences from a list of coordinates.</description> - <requirements> - <requirement type="set_environment">PYTHONPATH</requirement> - </requirements> <command interpreter="python"> ../Java/Python/coordinatesToSequence.py -i $formatType.inputFileName1 #if $formatType.FormatInputFileName1 == 'bed': @@ -62,7 +59,4 @@ <data name="outputFileFasta" format="fasta" label="coordinates to sequences output"/> </outputs> - <help> -You can use this tool, if you just want to convert your mapping data to genomic coordinates, without any filtering. It requires a genomic coordinates file together with its format, an output format (GFF3, BED, etc...), the genome, and prints you the corresponding file. - </help> </tool>