diff SMART/galaxy/getExons.xml @ 31:0ab839023fe4

Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
line wrap: on
line diff
--- a/SMART/galaxy/getExons.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/getExons.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,8 +1,5 @@
 <tool id="getExons" name="get exons">
     <description>Get the exons of a set of transcripts.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
     <command interpreter="python">
 		../Java/Python/getExons.py -i $formatType.inputFileName
 		#if $formatType.FormatInputFileName == 'bed':
@@ -70,7 +67,7 @@
     </inputs>
         
     <outputs>
-        <data format="gff3" name="outputFileGff" label="[get exons] output file"/>       
+        <data format="gff3" name="outputFileGff" label="[getExons -> gff3] Output File"/>       
     </outputs> 
 <tests>
     <test>
@@ -80,8 +77,4 @@
       <output name="outputFileGff" file="exp_getExons.gff3" />
     </test>
 </tests>
-
-	<help>
-Provide all the exons of an annotation file.
-	</help>
 </tool>