Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/restrictTranscriptList.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
---|---|
date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
line wrap: on
line diff
--- a/SMART/galaxy/restrictTranscriptList.xml Mon Apr 29 03:45:52 2013 -0400 +++ b/SMART/galaxy/restrictTranscriptList.xml Tue Apr 30 14:33:21 2013 -0400 @@ -1,8 +1,5 @@ <tool id="restrictTranscriptList" name="restrict transcript list"> - <description>Select the features which are located in a given locus.</description> - <requirements> - <requirement type="set_environment">PYTHONPATH</requirement> - </requirements> + <description>Keep the coordinates which are located in a given position.</description> <command interpreter="python"> ../Java/Python/restrictTranscriptList.py -i $formatType.inputFileName #if $formatType.FormatInputFileName == 'bed': -f bed @@ -78,7 +75,7 @@ </conditional> <conditional name="OptionStart"> - <param name="start" type="select" label="start region of the locus"> + <param name="start" type="select" label="restrict to the start of the transcript"> <option value="Yes">Yes</option> <option value="No" selected="true">No</option> </param> @@ -90,7 +87,7 @@ </conditional> <conditional name="OptionEnd"> - <param name="end" type="select" label="end region of the locus"> + <param name="end" type="select" label="restrict to the end of the transcript"> <option value="Yes">Yes</option> <option value="No" selected="true">No</option> </param> @@ -103,11 +100,10 @@ </inputs> <outputs> - <data format="gff3" name="outputFile" label="[restrict transcript list] output file"/> + <data format="gff3" name="outputFile" label="[restrictTranscriptList] Output File"/> </outputs> <help> -Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions. </help> <tests> <test>