--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/launcher/tests/Test_RepeatMaskerClusterLauncher.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,45 @@
+import unittest
+from commons.launcher.RepeatMaskerClusterLauncher import RepeatMaskerClusterLauncher
+
+
+class Test_RepeatmaskerClusterLauncher( unittest.TestCase ):
+    
+    
+    def setUp( self ):
+        self._i = RepeatMaskerClusterLauncher()
+        
+        
+    def tearDown( self ):
+        self._i = None
+        
+        
+    def test_getSpecificHelpAsString( self ):
+        exp = ""
+        exp += "\nspecific options:"
+        exp += "\n     -s: name of the subject file (repeats, format='fasta')"
+        exp += "\n     -n: nb of processors to use in parallel (default=1)"
+        exp += "\n     -g: calculate the GC content"
+        exp += "\n     -b: skip bacterial insertion element check"
+        exp += "\n     -l: mask low-complexity DNA or simple repeats"
+        obs = self._i.getSpecificHelpAsString()
+        self.assertEqual( exp, obs )
+        
+        
+    def test_setASpecificAttributeFromCmdLine( self ):
+        self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" )
+        self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-n", "2" )
+        self.assertEqual( 2, self._i.getNbProcessors() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-g" )
+        self.assertTrue( self._i.getCalculateGCcontent() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-b" )
+        self.assertTrue( self._i.getSkipBacterialIsCheck() )
+
+        self._i.setASpecificAttributeFromCmdLine( "-l" )
+        self.assertFalse( self._i.getMaskSsr() )
+        
+if __name__ == "__main__":
+        unittest.main()
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