--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/hmmer/check/OldDetectFeatureConfigChecker.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,57 @@
+'''
+Created on 14 avr. 2009
+
+@author: oinizan
+'''
+import re
+from commons.core.checker.IChecker import IChecker
+from commons.core.checker.OldConfigChecker import ConfigChecker
+from commons.core.checker.ConfigException import ConfigException
+from commons.core.checker.CheckerException import CheckerException
+
+class DetectFeatureConfigChecker (IChecker):
+    '''
+    classdocs
+    '''
+    def __init__(self):
+        '''
+        Constructor
+        '''
+        self._dict = {"te_hmmer" : "", 
+                      "te_blrn" : ""                                  
+        }
+        self._specifiqueDict = {"te_hmmer_evalue" : "",
+                                "te_hmm_profiles" : ""                
+        }
+
+    def _appendMessageToConfigExceptionMessage(self, messages):
+        appendedMessages = []
+        for msg in messages:
+            if (re.match("\[detect_features\] - No option 'te_hmm_profiles' in section: 'detect_features'", msg)):
+                appendedMessages.append(msg + " whereas te_hmmer is set")
+            
+            if (re.match("\[detect_features\] - No option 'te_hmmer_evalue' in section: 'detect_features'", msg)):
+                appendedMessages.append(msg + " whereas te_hmmer is set - Default value will be set")
+
+        return appendedMessages
+
+        
+    def check(self, configFile):
+        chk = ConfigChecker("detect_features", self._dict)
+        try :
+            chk.check(configFile)
+        except ConfigException, e :
+            raise e
+
+        if self._dict["te_hmmer"] == "yes":                  
+            isErrorOccured = False
+            try:
+                chk = ConfigChecker("detect_features", self._specifiqueDict)
+                chk.check(configFile)                
+            except ConfigException, e:
+                appendedMessages = self._appendMessageToConfigExceptionMessage(e.messages) 
+                raise ConfigException("", appendedMessages)    
+                        
+        
+if __name__ == "__main__":                 
+    pass