--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/hmmer/check/test/Test_OldDetectFeaturesConfigChecker.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,138 @@
+import unittest
+import re
+import os
+from commons.pyRepetUnit.hmmer.check.OldDetectFeatureConfigChecker import DetectFeatureConfigChecker
+from commons.core.checker.ConfigException import ConfigException
+
+class Test_DetectFeaturesConfigChecker(unittest.TestCase):
+
+    def setUp(self):
+        self._detectFeatureConfigChecker = DetectFeatureConfigChecker()
+
+    def testWithDefaultLogger (self):
+        lineFound = False
+        try:
+            self._detectFeatureConfigChecker.check("dummyConfig")
+        except ConfigException, e:
+            for msg in e.messages:
+                if (re.match("CONFIG FILE not found.*", msg)):
+                    lineFound = True
+        self.assertTrue(lineFound)
+        
+    def testWithNoConfigFile(self):
+        lineFound = False
+        try:
+            self._detectFeatureConfigChecker.check("dummyConfig")
+        except ConfigException, e:
+            for msg in e.messages:
+                if (re.match("CONFIG FILE not found.*", msg)):
+                    lineFound = True
+        self.assertTrue(lineFound)
+
+    def testWithNoSectionInConfigFile(self):
+        config = open("config.cfg", "w");
+        config.close()
+        lineFound = False
+        try:
+            self._detectFeatureConfigChecker.check("config.cfg")
+        except ConfigException, e:
+            for msg in e.messages:
+                if (re.match("\[detect_features\] section not found.*", msg)):
+                    lineFound = True
+        self.assertTrue(lineFound)
+        os.remove("config.cfg")
+        
+    def testMissingOptionsInConfig (self):
+        dict = {}
+        MockConfigFile("config.cfg", dict)
+        hmmProfilsFound = False
+        TE_BLRnFound = False
+        try :
+            self._detectFeatureConfigChecker.check("config.cfg")
+        except ConfigException, e:
+            for msg in e.messages:
+                if (re.match("\[detect_features\] - No option 'te_hmmer' in section: 'detect_features'", msg)):
+                    hmmProfilsFound = True
+                if (re.match("\[detect_features\] - No option 'te_blrn' in section: 'detect_features'", msg)):
+                    TE_BLRnFound = True
+        self.assertTrue(hmmProfilsFound)
+        self.assertTrue(TE_BLRnFound)
+        os.remove("config.cfg")
+   
+    def testOptionsIfHmmProfilsSetAtYESInConfig (self):
+        
+        dict = {
+                "TE_HMMER" : "yes", 
+                "TE_BLRn" : "no"                
+        }
+        
+        profilDatabankFound = False
+        evalueFound = False
+        MockConfigFile("config.cfg", dict)
+        try :
+            self._detectFeatureConfigChecker.check("config.cfg")
+        except ConfigException, e:
+            for msg in e.messages:
+                print msg
+                if (re.match("\[detect_features\] - No option 'te_hmm_profiles' in section: 'detect_features' whereas te_hmmer is set", msg)):
+                    profilDatabankFound = True   
+                if (re.match("\[detect_features\] - No option 'te_hmmer_evalue' in section: 'detect_features' whereas te_hmmer is set - Default value will be set", msg)):
+                    evalueFound = True
+        self.assertTrue(profilDatabankFound)
+        self.assertTrue(evalueFound)
+        os.remove("config.cfg")
+        
+            
+    def testOptionsIfHmmProfilsSetAtNOInConfig (self):
+        profilDatabankFound = False
+        inputFormatFound = False
+        evalueFound = False
+        dict = {
+                "TE_HMMER" : "no"                
+        }
+        MockConfigFile("config.cfg", dict)
+        try :
+            self._detectFeatureConfigChecker.check("config.cfg")
+        except ConfigException, e:
+            for msg in e.messages:
+                if (re.match(".+INFO \[detect_features\] - No option 'te_hmm_profiles' in section: 'detect_features' whereas te_hmmer is set", msg)):
+                    profilDatabankFound = True   
+                if (re.match(".+INFO \[detect_features\] - No option 'te_hmmer_evalue' in section: 'detect_features' whereas te_hmmer is set - Default value will be set", msg)):
+                    evalueFound = True
+        self.assertFalse(profilDatabankFound)
+        self.assertFalse(inputFormatFound)
+        self.assertFalse(evalueFound)
+        os.remove("config.cfg")
+        
+    def testTE_BLRnAndTE_hmmerAtNoInConfig (self):
+        
+        dict = {
+                "TE_HMMER" : "no", 
+                "TE_BLRn" : "no"                
+        }
+        
+        exceptionNotRaised = True
+        MockConfigFile("config.cfg", dict)
+        try :
+            self._detectFeatureConfigChecker.check("config.cfg")
+        except ConfigException:
+            exceptionNotRaised = False
+        
+        self.assertTrue(exceptionNotRaised)
+        
+        os.remove("config.cfg")
+        
+class MockConfigFile:
+    
+    def __init__ (self, fileName, optionsDict):
+        
+        self._fileName = fileName
+        config = open(fileName, "w");
+        config.write("[detect_features]\n")
+        for key in optionsDict.keys():
+            config.write(key + ":" + optionsDict[key] + "\n")
+        config.close()
+
+
+if __name__ == "__main__":
+    unittest.main()