Mercurial > repos > yufei-luo > s_mart
diff tool_conf.xml @ 46:169d364ddd91
Uploaded
author | m-zytnicki |
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date | Mon, 30 Sep 2013 03:19:26 -0400 |
parents | 44d5973c188c |
children | b6481845eb0d |
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--- a/tool_conf.xml Wed Sep 18 08:51:22 2013 -0400 +++ b/tool_conf.xml Mon Sep 30 03:19:26 2013 -0400 @@ -1,48 +1,45 @@ - <section id="s_mart" name="S-MART" version=""> - <label id="Smart_Comparison" text="Comparison Tools" version=""/> - <tool file="s_mart/CompareOverlappingSmallQuery.xml"/> - <tool file="s_mart/CompareOverlappingSmallRef.xml"/> - <tool file="s_mart/compareOverlapping.xml"/> + <section id="s_mart" name="S-MART" version="3.0"> + <label id="Smart_Comparison" text="Comparison Tools" version="3.0"/> + <tool file="s_mart/CompareOverlappingAdapt.xml"/> <tool file="s_mart/getDifference.xml"/> <tool file="s_mart/computeCoverage.xml"/> <tool file="s_mart/GetFlanking.xml"/> <tool file="s_mart/GetDifferentialExpression.xml"/> - <label id="Smart_Merge" text="Merge Tools" version=""/> + <label id="Smart_Merge" text="Merge Tools" version="3.0"/> <tool file="s_mart/clusterize.xml"/> <tool file="s_mart/mergeTranscriptLists.xml"/> <tool file="s_mart/CollapseReads.xml"/> <tool file="s_mart/clusterizeBySlidingWindows.xml"/> <tool file="s_mart/mergeSlidingWindowsClusters.xml"/> - <label id="Smart_Visualization" text="Visualization Tools" version=""/> + <label id="Smart_Visualization" text="Visualization Tools" version="3.0"/> <tool file="s_mart/getDistribution.xml"/> <tool file="s_mart/getDistance.xml"/> <tool file="s_mart/getSizes.xml"/> <tool file="s_mart/plotCoverage.xml"/> <tool file="s_mart/WrappGetLetterDistribution1.xml"/> <tool file="s_mart/plotTranscriptList.xml"/> - <label id="Smart_Sequence" text="Sequence Tools" version=""/> + <label id="Smart_Sequence" text="Sequence Tools" version="3.0"/> <tool file="s_mart/CountReadGCPercent.xml"/> - <label id="Smart_Modification" text="Modification Tools" version=""/> + <label id="Smart_Modification" text="Modification Tools" version="3.0"/> <tool file="s_mart/modifyGenomicCoordinates.xml"/> <tool file="s_mart/modifySequenceList.xml"/> <tool file="s_mart/trimSequences.xml"/> - <label id="Smart_Selection" text="Selection Tools" version=""/> + <label id="Smart_Selection" text="Selection Tools" version="3.0"/> <tool file="s_mart/getExons.xml"/> <tool file="s_mart/getIntrons.xml"/> <tool file="s_mart/restrictFromSize.xml"/> <tool file="s_mart/restrictTranscriptList.xml"/> - <label id="Smart_Conversion" text="Conversion Tools" version=""/> + <label id="Smart_Conversion" text="Conversion Tools" version="3.0"/> <tool file="s_mart/ConvertTranscriptFile.xml"/> <tool file="s_mart/coordinatesToSequence.xml"/> <tool file="s_mart/mapperAnalyzer.xml"/> - <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/> + <label id="Smart_WIG" text="WIG Manipulation Tools" version="3.0"/> <tool file="s_mart/getWigData.xml"/> <tool file="s_mart/getWigDistance.xml"/> <tool file="s_mart/getWigProfile.xml"/> - <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/> + <label id="Smart_GFF" text="GFF Manipulation Tools" version="3.0"/> <tool file="s_mart/CleanTranscriptFile.xml"/> <tool file="s_mart/changeTagName.xml"/> <tool file="s_mart/changeGffFeatures.xml"/> - <tool file="s_mart/removeExonLines.xml"/> <tool file="s_mart/SelectByTag.xml"/> </section>