Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/removeExonLines.xml @ 59:2a4884ba3e5c

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author m-zytnicki
date Mon, 10 Feb 2014 03:39:09 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/removeExonLines.xml	Mon Feb 10 03:39:09 2014 -0500
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+<tool id="removeExonLines" name="remove exon lines">
+  <description>Removes the introns of the transcript files.</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
+  <command interpreter="python"> ../Java/Python/RemoveExons.py -i $inputFile -f gff3 -o $outputFile  </command>
+  <inputs>
+		<param name="inputFile" format="gff3" type="data" label="Input File"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[remove introns] output file"/>
+  </outputs>
+
+  <help>
+	Simply remove the introns of the input file, thus getting the unmatured transcript.
+  </help>
+</tool>