Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/removeExonLines.xml @ 38:2c0c0a89fad7

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author m-zytnicki
date Thu, 02 May 2013 09:56:47 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/removeExonLines.xml	Thu May 02 09:56:47 2013 -0400
@@ -0,0 +1,18 @@
+<tool id="removeExonLines" name="remove exon lines">
+  <description>Removes the lines containing Exon.</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
+  <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile  </command>
+  <inputs>
+    <param name="inputFile" type="data" label="Input File" format="gff3"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[remove exon line] output file"/>
+  </outputs>
+
+  <help>
+	command example: sh removeExonLines.sh input.gff3
+  </help>
+</tool>