Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/changeGffFeatures.xml @ 15:440ceca58672
Uploaded
author | m-zytnicki |
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date | Mon, 22 Apr 2013 11:08:07 -0400 |
parents | 769e306b7933 |
children | 94ab73e8a190 |
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--- a/SMART/galaxy/changeGffFeatures.xml Fri Apr 19 10:13:11 2013 -0400 +++ b/SMART/galaxy/changeGffFeatures.xml Mon Apr 22 11:08:07 2013 -0400 @@ -1,16 +1,20 @@ <tool id="changeGffFeatures" name="change gff Features"> - <description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description> + <description>Change a feature in a GFF file (the feature is the 3rd column).</description> <command interpreter="bash"> ../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile </command> <inputs> <param name="inputFile" type="data" label="Input File" format="gff"/> - <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/> - <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/> + <param name="inputFeature" type="text" value="exon" label="The feature you want to change"/> + <param name="outputFeature" type="text" value="exon" label="The new feature"/> </inputs> <outputs> <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/> </outputs> + + <help> + This script changes the third column of a GFF3 file (please refer to http://www.sequenceontology.org/gff3.shtml to know more about this format). + </help> </tool>