Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/CountReadGCPercent.xml @ 36:44d5973c188c

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author m-zytnicki
date Tue, 30 Apr 2013 15:02:29 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/CountReadGCPercent.xml	Tue Apr 30 15:02:29 2013 -0400
@@ -0,0 +1,17 @@
+<tool id="CountReadGCPercent" name="count read GCpercent">
+    <description>Count GC percent for each read against a genome.</description>
+    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
+  <inputs>
+      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
+      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
+   </outputs>
+
+  <help>
+Count the GC% of a FASTA file.
+  </help>
+</tool>
+