diff SMART/galaxy/Clusterize.xml @ 63:5f210bc9f486

Added a simple test for Clusterize
author m-zytnicki
date Mon, 19 Oct 2015 12:02:29 +0200
parents 90f4b29d884f
children
line wrap: on
line diff
--- a/SMART/galaxy/Clusterize.xml	Mon Oct 19 11:25:11 2015 +0200
+++ b/SMART/galaxy/Clusterize.xml	Mon Oct 19 12:02:29 2015 +0200
@@ -51,6 +51,18 @@
 		<data name="outputFileGff" format="gff3"/>
 	</outputs> 
 
+    <tests>
+        <test>
+            <!-- basic test -->
+            <param name="FormatInputFileName" value="bed"/>
+            <param name="inputFileName" value="smart_1.bed" ftype="bed"/>
+            <param name="colinear" value="false"/>
+            <param name="normalize" value="false"/>
+            <param name="distance" value="0"/>
+            <output name="output" file="smart_clusterize_out_1.gff3" ftype="gff3"/>
+        </test>
+    </tests>
+
 	<help>
 The script clusterizes the input genomic data. Two features are clusterized when their genomic intervals overlap. The output is a GFF3 file, where each element is a cluster. The number of elements in the cluster is given by the tag **nbElements**. The name of a cluster is the concatation of the names of its reads (like **read1--read2--read3**). Note that if the size of the name of the cluster exceeds 100 characters, it is truncated to the first 100 characters.