--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Program.java	Fri Jan 18 04:54:14 2013 -0500
@@ -0,0 +1,175 @@
+/**
+ *
+ * Copyright INRA-URGI 2009-2010
+ * 
+ * This software is governed by the CeCILL license under French law and
+ * abiding by the rules of distribution of free software. You can use,
+ * modify and/ or redistribute the software under the terms of the CeCILL
+ * license as circulated by CEA, CNRS and INRIA at the following URL
+ * "http://www.cecill.info".
+ * 
+ * As a counterpart to the access to the source code and rights to copy,
+ * modify and redistribute granted by the license, users are provided only
+ * with a limited warranty and the software's author, the holder of the
+ * economic rights, and the successive licensors have only limited
+ * liability.
+ * 
+ * In this respect, the user's attention is drawn to the risks associated
+ * with loading, using, modifying and/or developing or reproducing the
+ * software by the user in light of its specific status of free software,
+ * that may mean that it is complicated to manipulate, and that also
+ * therefore means that it is reserved for developers and experienced
+ * professionals having in-depth computer knowledge. Users are therefore
+ * encouraged to load and test the software's suitability as regards their
+ * requirements in conditions enabling the security of their systems and/or
+ * data to be ensured and, more generally, to use and operate it in the
+ * same conditions as regards security.
+ * 
+ * The fact that you are presently reading this means that you have had
+ * knowledge of the CeCILL license and that you accept its terms.
+ *
+ */
+import java.util.*;
+import java.awt.*;
+import javax.swing.*;
+
+
+public class Program {
+  String                 shortName;
+  String                 name;
+  String                 section;
+  String                 description;
+  Vector <ProgramOption> options;
+  JPanel                 panel;
+  JButton                button;
+
+
+  public Program() {
+    this.shortName = null;  
+    this.name      = null;  
+    this.options   = new Vector <ProgramOption> ();  
+  }
+
+
+  public void setShortName(String shortName) {
+    this.shortName = shortName;
+  }
+
+
+  public void setName(String name) {
+    this.name = name;
+  }
+
+
+  public void setSection(String section) {
+    this.section = section;
+  }
+
+  public void setDescription(String description) {
+    this.description = description;
+  }
+
+
+  public void addOption(ProgramOption option) {
+    options.add(option);
+  }
+
+
+  public String getShortName() {
+    return this.shortName;
+  }
+
+
+  public String getName() {
+    return this.name;
+  }
+
+
+  public String getSection() {
+    return this.section;
+  }
+
+  public String getDescription() {
+    return this.description;
+  }
+
+
+  public String checkValues() {
+    for (int i = 0; i < options.size(); i++) {
+      String comment = options.get(i).checkValue();
+      if (comment != null) {
+        return comment;
+      }
+    }
+    return null;
+  }
+
+
+  public LinkedList<String> getCommand() {
+    LinkedList<String> parameterList = new LinkedList<String>();
+    parameterList.add(Global.pythonCommand);
+    parameterList.add("Python" + java.io.File.separator + this.shortName);
+    for (int i = 0; i < options.size(); i++) {
+      ProgramOption option = options.get(i);
+      parameterList.addAll(option.getCommand());
+    }
+    return parameterList;
+  }
+
+
+  public JPanel getPanel() {
+    if (this.panel != null) {
+      return this.panel;
+    }
+    
+    this.panel = new JPanel(false);
+    this.panel.setLayout(new FlowLayout());
+    Box box = Box.createVerticalBox();
+
+    JPanel descriptionPanel = new JPanel(false);
+    JLabel descriptionLabel = new JLabel(this.description);
+    descriptionPanel.add(descriptionLabel);
+    box.add(descriptionPanel);
+
+    for (int i = 0; i < options.size(); i++) {
+      ProgramOption option = options.get(i);
+      JPanel        panel  = option.getPanel();
+      if (panel == null) {
+        System.out.println("Problem with Python program '" + this.shortName + "'.");
+        return null;
+      }
+      box.add(option.getPanel());
+    }
+
+    JPanel buttonPanel = new JPanel(false);
+    this.button = new JButton("GO!");
+
+    buttonPanel.add(button);
+
+    box.add(buttonPanel);
+
+    this.panel.add(box);
+
+    return this.panel;
+  }
+
+
+  public JButton getButton() {
+    if (this.button == null) {
+      this.getPanel();
+    }
+    return this.button;
+  }
+
+  
+  public Vector < File > getOutputFiles() {
+    Vector < File > files = new Vector < File > ();
+    for (int i = 0; i < options.size(); i++) {
+      ProgramOption option = options.get(i);
+      if (! option.isInput()) {
+        files.add(option.getOutputFile());
+      }
+    }
+    return files;
+  }
+}