--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/ProgramFileReader.java	Fri Jan 18 04:54:14 2013 -0500
@@ -0,0 +1,174 @@
+/**
+ *
+ * Copyright INRA-URGI 2009-2010
+ * 
+ * This software is governed by the CeCILL license under French law and
+ * abiding by the rules of distribution of free software. You can use,
+ * modify and/ or redistribute the software under the terms of the CeCILL
+ * license as circulated by CEA, CNRS and INRIA at the following URL
+ * "http://www.cecill.info".
+ * 
+ * As a counterpart to the access to the source code and rights to copy,
+ * modify and redistribute granted by the license, users are provided only
+ * with a limited warranty and the software's author, the holder of the
+ * economic rights, and the successive licensors have only limited
+ * liability.
+ * 
+ * In this respect, the user's attention is drawn to the risks associated
+ * with loading, using, modifying and/or developing or reproducing the
+ * software by the user in light of its specific status of free software,
+ * that may mean that it is complicated to manipulate, and that also
+ * therefore means that it is reserved for developers and experienced
+ * professionals having in-depth computer knowledge. Users are therefore
+ * encouraged to load and test the software's suitability as regards their
+ * requirements in conditions enabling the security of their systems and/or
+ * data to be ensured and, more generally, to use and operate it in the
+ * same conditions as regards security.
+ * 
+ * The fact that you are presently reading this means that you have had
+ * knowledge of the CeCILL license and that you accept its terms.
+ *
+ */
+import java.util.*;
+import java.io.File;
+import java.io.*;
+
+
+public class ProgramFileReader {
+  String fileName;
+  Vector <Program> programs;
+
+
+  public ProgramFileReader(String fileName) {
+    this.fileName = fileName;  
+    this.programs = new Vector <Program> ();
+  }
+
+
+  public boolean read() {
+//  File    file    = new File(this.fileName);
+//  Program program = null;
+//  int     step    = 0;
+//  TreeMap <String, ProgramOption> options = new TreeMap <String, ProgramOption> ();
+
+//  try {
+//    BufferedReader reader = new BufferedReader(new FileReader(file));
+//    String line    = null;
+//    String section = null;
+
+//    while ((line = reader.readLine()) != null) {
+
+//      line = line.trim();
+
+//      if (line.length() == 0) {
+//        if (program != null) {
+//          programs.add(program);
+//        }
+//        program = null;
+//        step = 0;
+//        continue;
+//      }
+
+//      if ((line.charAt(0) == '[') && (line.charAt(line.length() - 1) == ']')) {
+//        section = line.substring(1, line.length() - 1).trim();
+//        continue;
+//      }
+//      switch (step) {
+//        case 0:
+//        program = new Program();
+//          program.setName(line);
+//          if (section == null) {
+//            System.out.println("Error! Section of program '" + line + "' is not set!");
+//          }
+//          program.setSection(section);
+//          step = 1;
+//          break;
+//        case 1:
+//          program.setShortName(line);
+//          step = 2;
+//          break;
+//        case 2:
+//          ProgramOption option = new ProgramOption();
+
+//          String[] elements    = line.split(":");
+//          boolean  input       = elements[0].trim().equalsIgnoreCase("input")? true: false;
+//          String[] subElements = elements[1].split(";");
+//          String   identifier = subElements[0].trim();
+
+//          option.setInput(input);
+
+//          if (input) {
+
+//            if (subElements.length < 4) {
+//              System.out.println("Line '" + line + "' is weird...");
+//            }
+
+//            String   type       = subElements[1].trim();
+//            String   comment    = subElements[2].trim();
+//            boolean  compulsory = subElements[3].trim().equalsIgnoreCase("0")? false: true;
+
+//            option.setIdentifier(identifier);
+//            option.setType(type);
+//            option.setComment(comment);
+//            option.setCompulsory(compulsory);
+
+//            if ("file".compareToIgnoreCase(type) == 0) {
+//              if (subElements.length < 5) {
+//                System.out.println("Line '" + line + "' is weird...");
+//              }
+
+//              String formatIdentifier = subElements[4].trim();
+//              option.setFormatIdentifier(formatIdentifier);
+//            }
+//            else if ("choice".compareToIgnoreCase(type) == 0) {
+//              if (subElements.length < 5) {
+//                System.out.println("Line '" + line + "' is weird...");
+//              }
+
+//              String[] choices = subElements[4].trim().split(",");
+//              for (int i = 0; i < choices.length; i++) {
+//                choices[i] = choices[i].trim();
+//              }
+//              option.setChoices(choices);
+//            }
+//            options.put(identifier, option);
+//          }
+//          else {
+//            String format = subElements[1].trim();
+
+//            option.setFormat(format);
+//            option.setAssociatedOption(options.get(identifier));
+//          }
+
+//          program.addOption(option);
+
+//          break;
+//        default:
+//          return false;
+//      }
+//    }
+
+//    reader.close();
+//  }
+//  catch (FileNotFoundException e) {
+//    return false;
+//  }
+//  catch (IOException e) {
+//    return false;
+//  }
+
+//  if (program != null) {
+//    programs.add(program);
+//  }
+
+    return true;
+  }
+
+  public int getNbPrograms() {
+    return programs.size();
+  }
+
+  public Program getProgram(int i) {
+    return programs.get(i);
+  }
+}