Mercurial > repos > yufei-luo > s_mart
diff SMART/Java/Python/testInstall.py @ 6:769e306b7933
Change the repository level.
author | yufei-luo |
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date | Fri, 18 Jan 2013 04:54:14 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/Java/Python/testInstall.py Fri Jan 18 04:54:14 2013 -0500 @@ -0,0 +1,103 @@ +#! /usr/bin/env python +# +# Copyright INRA-URGI 2009-2010 +# +# This software is governed by the CeCILL license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL +# license as circulated by CEA, CNRS and INRIA at the following URL +# "http://www.cecill.info". +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# In this respect, the user's attention is drawn to the risks associated +# with loading, using, modifying and/or developing or reproducing the +# software by the user in light of its specific status of free software, +# that may mean that it is complicated to manipulate, and that also +# therefore means that it is reserved for developers and experienced +# professionals having in-depth computer knowledge. Users are therefore +# encouraged to load and test the software's suitability as regards their +# requirements in conditions enabling the security of their systems and/or +# data to be ensured and, more generally, to use and operate it in the +# same conditions as regards security. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL license and that you accept its terms. +# +""" +Test if the configuration is sound +""" + +import sys +import os +import subprocess + +# Test Python files +try : + from SMART.Java.Python.misc.RPlotter import * +except: + print "Cannot find Python scripts! Update PYTHONPATH (currently %s) environment variable and see configuration in the documentation!" % (os.environ["PYTHONPATH"] if "PYTHONPATH" in os.environ else "empty") + sys.exit(3) + +try : + from SMART.Java.Python.mySql.MySqlTranscriptTable import * + from SMART.Java.Python.mySql.MySqlConnection import * +except: + print "SQLite is not installed ! Please read the documentation!" + sys.exit(4) + + +if __name__ == "__main__": + + print "Python scripts are correctly read." + + # Test mySQL + connection = MySqlConnection() + table = MySqlTranscriptTable(connection) + + try: + table.createTranscriptTable() + except: + print "Cannot connect to the SQLite database! See configuration in the documentation!" + sys.exit(5) + + print "SQLite database is correctly set up." + + + # Test R + fileName = "tmpFile.R" + file = open(fileName, "w") + file.write("?licence\n") + file.close() + rCommand = "R" + if "SMARTRPATH" in os.environ: + rCommand = os.environ["SMARTRPATH"] + command = "\"%s\" CMD BATCH %s" % (rCommand, fileName) + status = subprocess.call(command, shell=True) + os.remove(fileName) + outputFileName = "%sout" % (fileName) + if os.path.exists(outputFileName): + os.remove(outputFileName) + + if status != 0: + print "Problem with the execution of R script (command '%s' did not work, current directory is %s, status is %d)! See configuration in the documentation!" % (command, os.getcwd(), status) + sys.exit(6) + + line = {0: 1, 1: 2} + pngFileName = "tmpFile.png" + plotter = RPlotter(pngFileName) + plotter.addLine(line) + try: + plotter.plot() + except: + print "Problem with the execution of R script: library 'RColorBrewer' is missing! See configuration in the documentation!" + sys.exit(7) + os.remove(pngFileName) + + print "R is available." + + print "Set up is fine! Enjoy S-MART!"