--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/Java/formats.txt Fri Jan 18 04:54:14 2013 -0500 @@ -0,0 +1,4 @@ +sequence: fasta, fastq +transcript: bed, gff, gff2, gff3, csv +mapping: axt, blast, bowtie, exo, maq, nucmer, psl, sam, seqmap, shrimp, soap, soap2 +other: txt, wig, png, nclist