Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/ConvertTranscriptFile_BedToGff3.xml @ 6:769e306b7933

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Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/ConvertTranscriptFile_BedToGff3.xml	Fri Jan 18 04:54:14 2013 -0500
@@ -0,0 +1,15 @@
+<tool id="ConvertTranscriptFile_BedToGff3" name="Bed -> Gff3">
+  <description>Convert Bed File to Gff3 File.</description>
+  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f bed -o $outputFile -g gff3 yes 2>$logFile </command>
+  <inputs>
+    <param name="inputFile" type="data" label="Input File" format="bed"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[bed -> gff3] Output File"/>
+    <data format="txt" name="logFile" label="[bed -> gff3] Log File"/>
+  </outputs>
+
+  <help>
+  </help>
+</tool>