Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/CountReadGCPercent.xml @ 6:769e306b7933

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author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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children 440ceca58672
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/CountReadGCPercent.xml	Fri Jan 18 04:54:14 2013 -0500
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+<tool id="CountReadGCPercent" name="count read GCpercent">
+    <description>Count GC percent for each read against a genome.</description>
+    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
+  <inputs>
+      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
+      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
+   </outputs>
+
+  <help>
+  </help>
+</tool>
+