--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/core/seq/test/TestClusterConsensusCollection.py	Fri Jan 18 04:54:14 2013 -0500
@@ -0,0 +1,67 @@
+import unittest
+import os
+from commons.core.seq.ClusterConsensusCollection import ClusterConsensusCollection
+from commons.core.seq.Bioseq import Bioseq
+from commons.core.seq.BioseqDB import BioseqDB
+
+class TestClusterConsensusCollection(unittest.TestCase):
+
+    def setUp(self):
+        self._clusterSequencesFileName = "clusterSequences.fa"
+        self._ClusterConsensusCollection = ClusterConsensusCollection(self._clusterSequencesFileName)
+        self._createClusterConsensusFile()
+
+    def tearDown(self):
+        os.remove(self._clusterSequencesFileName)
+        
+    def test_fillCollection(self):
+        expClusterConsensusCollection = ClusterConsensusCollection(self._clusterSequencesFileName)
+        expClusterConsensusCollection._clusterFileName = self._clusterSequencesFileName
+        bioseq1 = Bioseq("seq1", "ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT")
+        bioseq2 = Bioseq("seq2", "ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT")
+        bioseq3 = Bioseq("seq3", "ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT")
+        iBioseqDB1 = BioseqDB()
+        iBioseqDB2 = BioseqDB()
+        iBioseqDB1.setData([bioseq1, bioseq2])
+        iBioseqDB2.setData([bioseq3])
+        expClusterConsensusCollection._lClusterConsensus = [iBioseqDB1, iBioseqDB2]
+        self._ClusterConsensusCollection.fillCollection()
+        self.assertEqual(expClusterConsensusCollection, self._ClusterConsensusCollection)
+        
+    def test_getNumClusterForAConsensus_for_seq2(self):
+        self._ClusterConsensusCollection.fillCollection()
+        expClusterNumber = 1
+        obsClusterNumber = self._ClusterConsensusCollection.getNumClusterForAConsensus ("seq2")
+        self.assertEqual(expClusterNumber, obsClusterNumber)
+        
+    def test_getNumClusterForAConsensus_for_seq3(self):
+        self._ClusterConsensusCollection.fillCollection()
+        expClusterNumber = 2
+        obsClusterNumber = self._ClusterConsensusCollection.getNumClusterForAConsensus ("seq3")
+        self.assertEqual(expClusterNumber, obsClusterNumber)
+        
+    def test_getNumConsensusInCluster_1(self):
+        self._ClusterConsensusCollection.fillCollection()
+        expConsensusNumber = 2
+        obsConsensusNumber = self._ClusterConsensusCollection.getNumConsensusInCluster (1)
+        self.assertEqual(expConsensusNumber, obsConsensusNumber)
+        
+    def test_getNumConsensusInCluster_2(self):
+        self._ClusterConsensusCollection.fillCollection()
+        expConsensusNumber = 1
+        obsConsensusNumber = self._ClusterConsensusCollection.getNumConsensusInCluster (2)
+        self.assertEqual(expConsensusNumber, obsConsensusNumber)
+    
+    def _createClusterConsensusFile(self):
+        fCluster = open(self._clusterSequencesFileName, "w")
+        fCluster.write(">BlastclustCluster1Mb1 seq1\n")
+        fCluster.write("ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT\n")
+        fCluster.write(">BlastclustCluster1Mb2 seq2\n")
+        fCluster.write("ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT\n")
+        fCluster.write(">BlasterGrouperCluster3Mb1 seq3\n")
+        fCluster.write("ACCAAAGACACTAGAATAACAAGATGCGTAACGCCATACGATTTTTTGGCACACTATTTT\n")
+        fCluster.close()
+
+
+if __name__ == "__main__":
+    unittest.main()
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