Mercurial > repos > yufei-luo > s_mart

diff SMART/Java/Python/CompareOverlappingSmallRef.py @ 60:90f4b29d884f

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Uploaded
author m-zytnicki
date Fri, 21 Feb 2014 08:32:36 -0500
parents 2ac71607aa60
children
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line diff
--- a/SMART/Java/Python/CompareOverlappingSmallRef.py	Mon Feb 10 03:39:09 2014 -0500
+++ b/SMART/Java/Python/CompareOverlappingSmallRef.py	Fri Feb 21 08:32:36 2014 -0500
@@ -235,6 +235,7 @@
 	cosr.includeNotOverlapping(options.notOverlapping)
 	cosr.setDistance(options.distance)
 	cosr.setAntisense(options.antisense)
+	cosr.setCollinear(options.collinear)
 	cosr.setInvert(options.exclude)
 	cosr.setMinPercentOverlap(options.pcOverlapQuery, options.pcOverlapRef)
 	cosr.setMinOverlap(options.minOverlap)