Mercurial > repos > yufei-luo > s_mart

diff SMART/DiffExpAnal/listInputs.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/DiffExpAnal/listInputs.xml	Mon Apr 29 03:20:15 2013 -0400
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+<tool id="listInputs" name="listInputs">
+	<description>Give a list of input files from different conditions/groups for DESeq analysis, DESeq can then charge these input files from the given list.</description>
+	<command interpreter="perl"> listInputs.pl $inputFromGroup1 $inputFromGroup2 $output
+	</command>
+
+	<inputs>
+		<param name="inputFromGroup1" type="data" format="tabular" label="Please choose your file from group1."/>
+		<param name="inputFromGroup2" type="data" format="tabular" label="Please choose your file from group2."/>		
+	</inputs>
+
+	<outputs>
+		<data format="txt" name="output" label="listInputs Output"/>
+	</outputs>
+
+	<help>
+		This tool can facilate the the chargement for DESeq tool.
+		Example:
+		From group1, we have input1.
+		From group2, we have input2.
+		This tool will give us a list like:
+		fileID=1	input1	group1
+		fileID=2	input2	group2
+		Where the value of fileID is unique for each input file. 
+	</help>
+</tool>