--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/Cpp/ncListCreator.hpp	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,57 @@
+#ifndef NC_LIST_CREATOR_HPP
+#define NC_LIST_CREATOR_HPP
+
+#include "ncList.hpp"
+#include "table.hpp"
+#include "genomicInterval.hpp"
+#include <set>
+#include <map>
+
+typedef set<string> Chromosomes;
+typedef map<string, NCList *> NCLists;
+
+static const unsigned int H_CELL_SIZE = 2;
+static const unsigned int L_CELL_SIZE = 4;
+static const unsigned int T_CELL_SIZE = 5;
+
+static const unsigned int START   = 0;
+static const unsigned int END     = 1;
+static const unsigned int LIST    = 2;
+static const unsigned int PARENT  = 3;
+static const unsigned int NEW     = 4;
+static const unsigned int LENGTH  = 1;
+
+
+class NCListCreator {
+
+    private:
+        string inputFileName;
+        Table  *h, *l, *t;
+
+        string getFileName(string chromosome);
+        void buildLists(string chromosome);
+        void createTables(string chromosome);
+        void initLists(string chromosome);
+        void fillTables(string chromosome);
+        void labelLists();
+        void computeSubStart();
+        void computeAbsPosition();
+        void cleanFiles();
+        void transfer(string chromosome);
+        unsigned int nbLists, nbLines;
+
+
+    public:
+        Chromosomes chromosomes;
+        NCLists ncLists;
+
+        NCListCreator (string inputFileName);
+
+        void splitFile ();
+        void run ();
+
+};
+
+#endif
+
+