--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/test/Test_F_GetRandomSubset.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,55 @@
+import unittest
+import os
+from SMART.Java.Python.GetRandomSubset import GetRandomSubset
+from commons.core.parsing.BedParser import BedParser
+from commons.core.parsing.GffParser import GffParser
+
+class Test_F_GetRandomSubset(unittest.TestCase):
+
+    def setUp(self):
+        self._inputFileName = "inputFileTest.bed"
+        self._writeInputFile()
+        self._outputFileName = "output.gff3"
+        
+    def tearDown(self):
+        os.remove(self._inputFileName)
+        os.remove(self._outputFileName)
+
+    def test_run_simple(self):
+        nbElements = 2
+        inputTranscripts = []
+        parser = BedParser(self._inputFileName, 0)
+        for transcript in parser.getIterator():
+            inputTranscripts.append(transcript)
+        grs = GetRandomSubset(0)
+        grs.setInputFile(self._inputFileName, "bed")
+        grs.setNumber(nbElements, None)
+        grs.setOutputFile(self._outputFileName)
+        grs.run()
+        outputTranscripts = []
+        parser = GffParser(self._outputFileName, 0)
+        for transcript in parser.getIterator():
+            outputTranscripts.append(transcript)
+        self.assertEqual(len(outputTranscripts), nbElements)
+        for outputTranscript in outputTranscripts:
+            for inputTranscript in inputTranscripts:
+                if outputTranscript.getChromosome() == inputTranscript.getChromosome() and outputTranscript.getDirection() == inputTranscript.getDirection() and outputTranscript.getStart() == inputTranscript.getStart() and outputTranscript.getEnd() == inputTranscript.getEnd() and outputTranscript.getName() == inputTranscript.getName():
+                    break
+            else:
+                self.fail()
+
+    def _writeInputFile(self):
+        f = open(self._inputFileName, "w")
+        f.write("arm_X\t10000100\t10000200\ttest1.1\t100\t+\t10000100\t10000200\t0\t1\t100,\t0,\n")
+        f.write("arm_X\t10000100\t10000200\ttest1.2\t100\t-\t10000100\t10000200\t0\t1\t100,\t0,\n")
+        f.write("arm_2R\t10000100\t10000200\ttest1.3\t100\t+\t10000100\t10000200\t0\t1\t100,\t0,\n")
+        f.write("arm_X\t10000000\t10000100\ttest1.4\t100\t+\t10000000\t10000100\t0\t1\t100,\t0,\n")
+        f.write("arm_X\t10000200\t10000300\ttest1.5\t100\t+\t10000200\t10000300\t0\t1\t100,\t0,\n")
+        f.write("arm_X\t9999900\t9999950\ttest1.6\t100\t+\t9999900\t9999950\t0\t1\t50,\t0,\n")
+        f.write("arm_X\t10000000\t10000050\ttest1.7\t100\t-\t10000000\t10000050\t0\t1\t50,\t0,\n")
+        f.close()
+        
+                
+
+if __name__ == "__main__":
+    unittest.main()