--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/test/Test_F_getReadDistribution.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,37 @@
+import unittest
+import os, glob
+
+
+class Test_F_getReadDistribution(unittest.TestCase):
+
+    def setUp(self):
+        self.inputFileName  = "inputFile.fasta"
+        self.outputFileName = "outputFile"
+         
+    def tearDown(self):
+        for fileRoot in (self.inputFileName, self.outputFileName):
+            for file in glob.glob("%s*" % (fileRoot)):
+                os.remove(file)
+        os.system("rm .RData")
+
+    def test_run_simple(self):
+        handle = open(self.inputFileName, "w")
+        handle.write(">test1\n")
+        handle.write("AAAAAA\n")
+        handle.write(">test2\n")
+        handle.write("AAAAAA\n")
+        handle.write(">test3\n")
+        handle.write("CCCCCC\n")
+        handle.close()
+        handle.close()
+        os.system("python ../getReadDistribution.py -i %s -f fasta -n 1 -o %s -v 0" % (self.inputFileName, self.outputFileName))
+        self.assertTrue(os.path.exists("%s.png" % (self.outputFileName)))
+        handle = open("%s.txt" % (self.outputFileName))
+        lines = handle.readlines()
+        self.assertEquals(len(lines), 1)
+        self.assertEquals(lines[0], "AAAAAA\t2\n")
+
+        
+if __name__ == "__main__":
+    unittest.main()
+