Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/getDifference.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
line wrap: on
line diff
--- a/SMART/galaxy/getDifference.xml	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/galaxy/getDifference.xml	Mon Apr 29 03:20:15 2013 -0400
@@ -1,5 +1,8 @@
-<tool id="getDifference" name="get Difference">
+<tool id="getDifference" name="get difference">
 	<description>Gets all the regions of the genome, except the one given in an annotation file. Alternatively, it may also give all the elements from the first set which does not ovelap with the second set (at the nucleotide level).</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
 	<command interpreter="python">
 		../Java/Python/getDifference.py -i $formatType.inputFileName1
 		#if $formatType.FormatInputFileName1 == 'bed':
@@ -119,7 +122,7 @@
 
 
 	<outputs>
-		<data name="outputFileGff" format="gff3" label="[getDifference]output File."/>
+		<data name="outputFileGff" format="gff3" label="[get difference] output file."/>
 	</outputs> 
 
 	<help>