Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/getIntrons.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
line wrap: on
line diff
--- a/SMART/galaxy/getIntrons.xml	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/galaxy/getIntrons.xml	Mon Apr 29 03:20:15 2013 -0400
@@ -1,5 +1,8 @@
 <tool id="getIntrons" name="get introns">
     <description>Get the introns of a set of transcripts.</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
     <command interpreter="python">
 		../Java/Python/getIntrons.py -i $formatType.inputFileName
 		#if $formatType.FormatInputFileName == 'bed':
@@ -51,7 +54,7 @@
     </inputs>
         
     <outputs>
-        <data format="gff3" name="outputFileGff" label="[getIntrons -> gff3] Output File"/>       
+        <data format="gff3" name="outputFileGff" label="[get introns] output file"/>       
     </outputs> 
 <tests>
     <test>