Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/mapperAnalyzer.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
line wrap: on
line diff
--- a/SMART/galaxy/mapperAnalyzer.xml	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/galaxy/mapperAnalyzer.xml	Mon Apr 29 03:20:15 2013 -0400
@@ -1,5 +1,8 @@
 <tool id="mapperAnalyzer" name="mapper analyzer">
 	<description>Read the output of an aligner, print statistics and possibly translate into GFF, BED or GBrowse formats. </description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
 	<command interpreter="python">
 		../Java/Python/mapperAnalyzer.py -i $formatType.inputFileName1
 		#if $formatType.FormatInputFileName1 == 'bed':
@@ -179,7 +182,7 @@
 	</inputs>
 
 	<outputs>
-		<data name="outputFileGFF" format="gff3" label="[mapperAnalyzer] out file"/>
+		<data name="outputFileGFF" format="gff3" label="[mapper analyzer] output file"/>
 	</outputs> 
 	
 	<help>