Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/restrictTranscriptList.xml @ 18:94ab73e8a190
Uploaded
author | m-zytnicki |
---|---|
date | Mon, 29 Apr 2013 03:20:15 -0400 |
parents | 440ceca58672 |
children | 0ab839023fe4 |
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--- a/SMART/galaxy/restrictTranscriptList.xml Mon Apr 22 11:11:10 2013 -0400 +++ b/SMART/galaxy/restrictTranscriptList.xml Mon Apr 29 03:20:15 2013 -0400 @@ -1,5 +1,8 @@ <tool id="restrictTranscriptList" name="restrict transcript list"> <description>Select the features which are located in a given locus.</description> + <requirements> + <requirement type="set_environment">PYTHONPATH</requirement> + </requirements> <command interpreter="python"> ../Java/Python/restrictTranscriptList.py -i $formatType.inputFileName #if $formatType.FormatInputFileName == 'bed': -f bed @@ -100,10 +103,11 @@ </inputs> <outputs> - <data format="gff3" name="outputFile" label="[restrictTranscriptList] Output File"/> + <data format="gff3" name="outputFile" label="[restrict transcript list] output file"/> </outputs> <help> +Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions. </help> <tests> <test> @@ -117,8 +121,4 @@ </test> </tests> - <help> -Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions. - </help> - </tool>