Mercurial > repos > yufei-luo > s_mart
diff commons/core/parsing/FastaParser.py @ 18:94ab73e8a190
Uploaded
author | m-zytnicki |
---|---|
date | Mon, 29 Apr 2013 03:20:15 -0400 |
parents | 769e306b7933 |
children | 0ab839023fe4 |
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--- a/commons/core/parsing/FastaParser.py Mon Apr 22 11:11:10 2013 -0400 +++ b/commons/core/parsing/FastaParser.py Mon Apr 29 03:20:15 2013 -0400 @@ -80,7 +80,7 @@ if self.currentLine != None: if self.currentLine[0] != ">": raise Exception("First line is weird: %s" % (self.currentLine)) - name = self.currentLine[1:].split()[0] + name = self.currentLine[1:].split()[0].replace("|", "_").replace(".", "_") self.currentLine = None for line in self.handle: @@ -89,7 +89,7 @@ pass elif line[0] == ">": if name == None: - name = line[1:].split()[0] + name = line[1:].split()[0].replace("|", "_").replace(".", "_") else: self.currentLine = line return Sequence(name, string)