--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/convCoord/test/Test_ConvMapChr2Chunk.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,109 @@
+from commons.core.sql.DbFactory import DbFactory
+from commons.core.utils.FileUtils import FileUtils
+from commons.pyRepetUnit.convCoord.ConvMapChr2Chunk import ConvMapChr2Chunk
+import unittest
+import os
+
+class Test_ConvMapChr2Chunk(unittest.TestCase):
+
+    def setUp(self):
+        self._mapfilename="dummy.map"
+        self._maptablename="dummy_map"
+        
+        self._chunkmapfilename="chunk.map"
+        self._chunkmaptable="test_chunk_map"
+        
+        self._resfilename="dummy_res.map"
+        
+        map4convData="chunk1\tchr1\t1\t100\n"
+        map4convData+="chunk2\tchr1\t90\t200\n"
+        map4convData+="chunk3\tchr1\t190\t300\n"
+
+        map4conv=open(self._chunkmapfilename,"w")
+        map4conv.write(map4convData)
+        map4conv.close()
+        
+        self._db = DbFactory.createInstance()
+        self._db.createTable(self._chunkmaptable, "map", self._chunkmapfilename, True)
+        
+        map2convData="reg1\tchr1\t10\t80\n"
+        map2convData+="reg1\tchr1\t90\t110\n"
+        map2convData+="reg2\tchr1\t150\t160\n"
+        
+        map2convData+="reg3\tchr1\t70\t210\n"
+        map2convData+="reg4\tchr1\t85\t100\n"
+        map2convData+="reg5\tchr1\t85\t110\n"
+        
+        map2convData+="reg6\tchr1\t80\t10\n"
+        map2convData+="reg6\tchr1\t110\t90\n"
+        map2convData+="reg7\tchr1\t160\t150\n"
+        map2convData+="reg8\tchr1\t190\t300\n"
+        
+        map2convData+="reg9\tchr1\t210\t70\n"
+        map2convData+="reg10\tchr1\t100\t85\n"
+        map2convData+="reg11\tchr1\t110\t85\n"
+        map2convData+="reg12\tchr1\t300\t190\n"
+                        
+        map2conv=open(self._mapfilename,"w")
+        map2conv.write(map2convData)
+        map2conv.close()
+        
+        self._db.createTable(self._maptablename, "map", self._mapfilename, True)
+
+        mapResData="reg1\tchunk1\t10\t80\n"
+        mapResData+="reg1\tchunk1\t90\t100\n"
+        mapResData+="reg1\tchunk2\t1\t21\n"
+        mapResData+="reg2\tchunk2\t61\t71\n"
+
+        mapResData+="reg3\tchunk1\t70\t100\n"
+        mapResData+="reg3\tchunk2\t1\t111\n"
+        mapResData+="reg3\tchunk3\t1\t21\n"
+        
+        mapResData+="reg4\tchunk1\t85\t100\n"
+        mapResData+="reg4\tchunk2\t1\t11\n"
+        mapResData+="reg5\tchunk1\t85\t100\n"
+        mapResData+="reg5\tchunk2\t1\t21\n"
+        
+        mapResData+="reg6\tchunk1\t80\t10\n"
+        mapResData+="reg6\tchunk1\t100\t90\n"
+        mapResData+="reg6\tchunk2\t21\t1\n"
+        mapResData+="reg7\tchunk2\t71\t61\n"
+        mapResData+="reg8\tchunk2\t101\t111\n"
+        mapResData+="reg8\tchunk3\t1\t111\n"
+        
+        mapResData+="reg9\tchunk1\t100\t70\n"
+        mapResData+="reg9\tchunk2\t111\t1\n"
+        mapResData+="reg9\tchunk3\t21\t1\n"
+        
+        mapResData+="reg10\tchunk1\t100\t85\n"
+        mapResData+="reg10\tchunk2\t11\t1\n"
+        mapResData+="reg11\tchunk1\t100\t85\n"
+        mapResData+="reg11\tchunk2\t21\t1\n"
+        mapResData+="reg12\tchunk2\t111\t101\n"       
+        mapResData+="reg12\tchunk3\t111\t1\n"       
+                
+        mapRes=open(self._resfilename,"w")
+        mapRes.write(mapResData)
+        mapRes.close()
+        
+    def tearDown(self):
+        self._db.dropTable(self._chunkmaptable)
+        self._db.dropTable(self._maptablename)
+        self._db.close()
+        os.remove(self._resfilename)
+        os.remove(self._mapfilename)
+        os.remove(self._chunkmapfilename)
+
+    def test_convert(self):
+        conv = ConvMapChr2Chunk(self._db,self._maptablename, self._chunkmaptable, self._maptablename+"_onchk")
+        conv.convert()
+        obsFileName = "dummy_map.onchk"
+        self._db.exportDataToFile("dummy_map_onchk", obsFileName)
+        self._db.dropTable("dummy_map_onchk")
+        self.assertTrue(FileUtils.are2FilesIdentical(self._resfilename, obsFileName))
+        os.remove(obsFileName)
+        
+test_suite = unittest.TestSuite()
+test_suite.addTest( unittest.makeSuite( Test_ConvMapChr2Chunk ) )
+if __name__ == '__main__':
+    unittest.TextTestRunner(verbosity=2).run( test_suite )
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