diff commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateInAllFramesAndReplaceStopByX.py @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateInAllFramesAndReplaceStopByX.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,24 @@
+import os
+import unittest
+from commons.pyRepetUnit.fastaTranslation.allFrames.TranslateInAllFramesAndReplaceStopByX import TranslateInAllFramesAndReplaceStopByX
+from commons.core.seq.Bioseq import Bioseq
+from commons.core.utils.FileUtils import FileUtils
+
+class Test_F_TranslateInAllFramesAndReplaceStopByX(unittest.TestCase):
+    
+    def setUp(self):
+        self.bioseq = Bioseq()
+        self.preProcess = TranslateInAllFramesAndReplaceStopByX()
+        self._inputFile = "./datas/test_input_nt.fa" 
+        self._outputFile =  "./datas/PreProcessResult.fa" 
+        
+        
+    def testAcceptanceTranslateAfastaFileInAllFrame(self):
+        self.preProcess.setInputFile(self._inputFile)
+        self.preProcess.setOutputFile(self._outputFile)
+        self.preProcess.run()
+        self.assertTrue(FileUtils.are2FilesIdentical(self._outputFile, "./datas/test_input_aa.fa"))
+        os.system("rm " + self._outputFile)
+        
+if __name__ == "__main__":                 
+    unittest.main()
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