Mercurial > repos > yufei-luo > s_mart
diff smart_toolShed/SMART/Java/Files.java @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/smart_toolShed/SMART/Java/Files.java Thu Jan 17 10:52:14 2013 -0500 @@ -0,0 +1,75 @@ +/** + * + * Copyright INRA-URGI 2009-2010 + * + * This software is governed by the CeCILL license under French law and + * abiding by the rules of distribution of free software. You can use, + * modify and/ or redistribute the software under the terms of the CeCILL + * license as circulated by CEA, CNRS and INRIA at the following URL + * "http://www.cecill.info". + * + * As a counterpart to the access to the source code and rights to copy, + * modify and redistribute granted by the license, users are provided only + * with a limited warranty and the software's author, the holder of the + * economic rights, and the successive licensors have only limited + * liability. + * + * In this respect, the user's attention is drawn to the risks associated + * with loading, using, modifying and/or developing or reproducing the + * software by the user in light of its specific status of free software, + * that may mean that it is complicated to manipulate, and that also + * therefore means that it is reserved for developers and experienced + * professionals having in-depth computer knowledge. Users are therefore + * encouraged to load and test the software's suitability as regards their + * requirements in conditions enabling the security of their systems and/or + * data to be ensured and, more generally, to use and operate it in the + * same conditions as regards security. + * + * The fact that you are presently reading this means that you have had + * knowledge of the CeCILL license and that you accept its terms. + * + */ +import java.util.*; + +public class Files { + HashMap <String, File> files; + + public Files () { + files = new HashMap < String, File> (); + } + + public void addFile(String fileName, String type, String format) { + this.addFile(new File(fileName, type, format)); + } + + public void addFile(File file) { + files.put(file.name, file); + } + + public void clear() { + files.clear(); + } + + public String getType(String fileName) { + if (fileName == null) { + System.out.println("Error! Looking for format of empty file name!"); + } + if (! files.containsKey(fileName)) { + System.out.println("Oops! Format type of file " + fileName + " is not found!"); + return null; + } + return files.get(fileName).formatType; + } + + public String getFormat(String fileName) { + if (fileName == null) { + System.out.println("Error! Looking for format of empty file name!"); + } + if (! files.containsKey(fileName)) { + System.out.println("Oops! Format of file " + fileName + " is not found!"); + return null; + } + return files.get(fileName).format; + } +} +