--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/Java/Installer/SmartInstaller.java	Thu Jan 17 10:52:14 2013 -0500
@@ -0,0 +1,167 @@
+import java.util.*;
+import java.awt.*;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.io.*;
+import javax.swing.*;
+import javax.swing.filechooser.*;
+import javax.swing.border.*;
+import javax.swing.SwingUtilities;
+import java.net.*;
+
+public class SmartInstaller extends JPanel implements ActionListener {
+  int       BUFFER = 1024;
+
+  JFrame    mainFrame;
+  JTextArea logArea;
+
+  // configuration chooser buttons
+  String       configurations[] = {"32 bits", "64 bits"};
+  JRadioButton configurationButtons[];
+
+  // program chooser buttons
+  String    programChoosers[] = {"R", "R Color Brewer Package", "R HMisc Package", "Python 2.6", "S-MART"};
+  JCheckBox programChooserButtons[];
+
+  JButton   goButton;
+
+  // install directory
+  JButton    installDirectoryChooserButton;
+  JTextField installDirectoryChooserTextField;
+
+
+  public SmartInstaller() {
+    super();
+
+    Box box = Box.createVerticalBox();
+
+    // Header
+    JPanel       headerPanel = new JPanel(false);
+    JTextArea    headerArea  = new JTextArea("This is the S-MART installation tool.\r\nIt will download and install the needed softwares, as well as S-MART itself.\r\nYou can unselect the software that you already have installed.\r\nDuring the installation, accept all the default parameters.");
+    TitledBorder headerBorder = BorderFactory.createTitledBorder("Welcome to the S-MART installer!");
+    headerArea.setEditable(false);
+    headerArea.setBackground(headerPanel.getBackground());
+    headerPanel.add(headerArea);
+    headerPanel.setBorder(headerBorder);
+
+
+    // Configuration
+    JPanel configurationPanel = new JPanel(false);
+    configurationPanel.setLayout(new GridLayout(1, 0));
+    configurationButtons = new JRadioButton[configurations.length];
+    ButtonGroup configurationGroup = new ButtonGroup();
+    for (int i = 0; i < configurations.length; i++) {
+      JRadioButton button = new JRadioButton(configurations[i]);
+      configurationPanel.add(button);
+      configurationButtons[i] = button;
+      configurationGroup.add(button);
+    }
+    configurationButtons[0].setSelected(true);
+    TitledBorder configurationBorder = BorderFactory.createTitledBorder("Configuration");
+    configurationPanel.setBorder(configurationBorder);
+
+
+    // Program chooser panel
+    JPanel programPanel = new JPanel(false);
+    programPanel.setLayout(new GridLayout(0, 1));
+
+    JLabel programLabel = new JLabel("Choose which programs to install:");
+    programPanel.add(programLabel);
+    programChooserButtons = new JCheckBox[programChoosers.length];
+    for (int i = 0; i < programChoosers.length; i++) {
+      JCheckBox button = new JCheckBox(programChoosers[i]);
+      button.setSelected(true);
+      programPanel.add(button);
+      programChooserButtons[i] = button;
+    }
+    TitledBorder programBorder = BorderFactory.createTitledBorder("Programs");
+    programPanel.setBorder(programBorder);
+
+    // Install directory chooser
+    JPanel installDirectoryChooserPanel = new JPanel(false);
+    installDirectoryChooserPanel.setLayout(new GridLayout(1, 0));
+    JLabel installDirectoryChooserLabel = new JLabel("Choose a directory to install S-MART: ");
+    installDirectoryChooserTextField = new JTextField();
+    installDirectoryChooserButton = new JButton("Open...");
+    installDirectoryChooserButton.addActionListener(this);
+
+    installDirectoryChooserPanel.add(installDirectoryChooserLabel);
+    installDirectoryChooserPanel.add(installDirectoryChooserTextField);
+    installDirectoryChooserPanel.add(installDirectoryChooserButton);
+    TitledBorder installDirectoryChooserBorder = BorderFactory.createTitledBorder("Installation directory");
+    installDirectoryChooserPanel.setBorder(installDirectoryChooserBorder);
+
+    // GO!
+    JPanel goPanel = new JPanel(false);
+    goButton = new JButton("GO!");
+    goButton.addActionListener(this);
+    goButton.setSelected(true);
+    goPanel.add(goButton);
+    TitledBorder goBorder = BorderFactory.createTitledBorder("Start install");
+    goPanel.setBorder(goBorder);
+
+    // Log
+    logArea = new JTextArea(10, 120);
+    logArea.setFont(new Font("Monospaced", logArea.getFont().getStyle(), logArea.getFont().getSize()));
+    JScrollPane logScroll  = new JScrollPane(logArea, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
+    TitledBorder logBorder = BorderFactory.createTitledBorder("Log");
+    logScroll.setBorder(logBorder);
+
+    GridLayout horizontalLayout = new GridLayout(1, 0);
+
+    box.add(headerPanel);
+    box.add(configurationPanel);
+    box.add(programPanel);
+    box.add(installDirectoryChooserPanel);
+    box.add(goPanel);
+    box.add(logScroll);
+
+    add(box);
+  }
+
+
+  public void actionPerformed(ActionEvent e) {
+
+    // Install directories chooser
+    if (e.getSource() == goButton) {
+      boolean[] selectedPrograms = new boolean[programChoosers.length];
+      for (int i = 0; i < programChoosers.length; i++) {
+        selectedPrograms[i] = programChooserButtons[i].isSelected();
+      }
+      SmartInstallerTask task = new SmartInstallerTask(logArea, selectedPrograms, installDirectoryChooserTextField.getText(), (configurationButtons[0].isSelected())? 0: 1);
+      task.execute();
+    }
+    // Install directories chooser
+    else if (e.getSource() == installDirectoryChooserButton) {
+      JFileChooser chooser = new JFileChooser();
+      chooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
+      if (chooser.showOpenDialog(mainFrame) == JFileChooser.APPROVE_OPTION) {
+        installDirectoryChooserTextField.setText(chooser.getSelectedFile().getPath());
+      }
+    }
+  }
+
+  private static void createAndShowGUI() {
+    // Create and set up the window.
+    JFrame mainFrame = new JFrame("S-Mart Installer");
+    mainFrame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
+
+    //Create and set up the content pane.
+    JComponent newContentPane = new SmartInstaller();
+    newContentPane.setOpaque(true);
+    mainFrame.setContentPane(newContentPane);
+
+    // Display the window.
+    mainFrame.pack();
+    mainFrame.setVisible(true);
+  }
+
+
+  public static void main(String[] args) {
+    javax.swing.SwingUtilities.invokeLater(new Runnable() {
+      public void run() {
+        createAndShowGUI();
+      }
+    });
+  }
+}