Mercurial > repos > yufei-luo > s_mart

diff smart_toolShed/SMART/galaxy/CountReadGCPercent.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/galaxy/CountReadGCPercent.xml	Thu Jan 17 10:52:14 2013 -0500
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+<tool id="CountReadGCPercent" name="count read GCpercent">
+    <description>Count GC percent for each read against a genome.</description>
+    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
+  <inputs>
+      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
+      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
+  </inputs>
+
+  <outputs>
+    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
+   </outputs>
+
+  <help>
+  </help>
+</tool>
+