Mercurial > repos > yufei-luo > s_mart

diff smart_toolShed/SMART/galaxy/changeGffFeatures.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/galaxy/changeGffFeatures.xml	Thu Jan 17 10:52:14 2013 -0500
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+<tool id="changeGffFeatures" name="change gff Features">
+	<description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description>
+		<command interpreter="bash">
+			../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile
+		</command>
+      <inputs>
+	      <param name="inputFile" type="data" label="Input File" format="gff"/>	
+	      <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/>
+	      <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/>
+      </inputs>
+
+      <outputs>
+             <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/>
+      </outputs> 
+</tool>
+