Mercurial > repos > yufei-luo > s_mart

diff smart_toolShed/SMART/galaxy/qualToFastq.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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+++ b/smart_toolShed/SMART/galaxy/qualToFastq.xml	Thu Jan 17 10:52:14 2013 -0500
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+<tool id="qualToFastq" name="qual -> Fastq">
+  <description>Convert a file in FASTA/Qual format to FastQ format.</description>
+  <command interpreter="python"> ../Java/Python/qualToFastq.py -f $inputFastaFile -q $inputQualFile -o $outputFile </command>
+  <inputs>
+    <param name="inputFastaFile" type="data" label="Input fasta File" format="fasta"/>
+    <param name="inputQualFile" type="data" label="Input qual File" format="txt"/>
+  </inputs>
+
+  <outputs>
+    <data format="fastq" name="outputFile" label="[qual -> Fastq] Output File"/>
+  </outputs>
+
+  <help>
+  </help>
+</tool>
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