Mercurial > repos > yufei-luo > s_mart
diff SMART/Java/Python/cleaning/GffCleaner.py @ 41:e57682cd6997
Uploaded
| author | m-zytnicki |
|---|---|
| date | Thu, 30 May 2013 03:04:47 -0400 |
| parents | 769e306b7933 |
| children | 169d364ddd91 |
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--- a/SMART/Java/Python/cleaning/GffCleaner.py Thu May 30 03:03:34 2013 -0400 +++ b/SMART/Java/Python/cleaning/GffCleaner.py Thu May 30 03:04:47 2013 -0400 @@ -127,6 +127,11 @@ if line[0] == ">": break parsedLine = ParsedLine(line, cpt) if self.acceptedTypes == None or parsedLine.type in self.acceptedTypes: + if parsedLine.id in self.lines: + cpt = 1 + while "%s-%d" % (parsedLine.id, cpt) in self.lines: + cpt += 1 + parsedLine.id = "%s-%d" % (parsedLine.id, cpt) self.lines[parsedLine.id] = parsedLine progress.inc() progress.done()