Mercurial > repos > yufei-luo > s_mart
view SMART/galaxy/changeGffFeatures.xml @ 66:090709ab81d1
Minor change.
author | matthias.zytnicki@toulouse.inra.fr |
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date | Wed, 04 Nov 2015 09:47:03 +0100 |
parents | 2c0c0a89fad7 |
children |
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<tool id="changeGffFeatures" name="change GFF features"> <description>Change a feature in a GFF file (the feature is the 3rd column).</description> <requirements> <requirement type="set_environment">PYTHONPATH</requirement> </requirements> <command interpreter="bash"> ../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile </command> <inputs> <param name="inputFile" type="data" label="Input File" format="gff"/> <param name="inputFeature" type="text" value="exon" label="The feature you want to change"/> <param name="outputFeature" type="text" value="exon" label="The new feature"/> </inputs> <outputs> <data name="outputFile" format="gff" label="[change GFF features] Output File"/> </outputs> <help> This script changes the third column of a GFF3 file (please refer to http://www.sequenceontology.org/gff3.shtml to know more about this format). </help> </tool>