view SMART/Java/Python/TestFiles/expOutputGff.gff3 @ 31:0ab839023fe4

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date Tue, 30 Apr 2013 14:33:21 -0400
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C02HBa0185P07_LR40	S-MART	transcript	3889	3924	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:415:1217;identity=100.000000;Name=HWI-EAS337_3:7:1:415:1217
C02HBa0185P07_LR40	S-MART	transcript	3830	3865	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:415:1217;identity=100.000000;Name=HWI-EAS337_3:7:1:415:1217
C11SLe0053P22_LR298	S-MART	transcript	2130	2165	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1178:755;identity=100.000000;Name=HWI-EAS337_3:7:1:1178:755
C11SLe0053P22_LR298	S-MART	transcript	1980	2015	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1178:755;identity=100.000000;Name=HWI-EAS337_3:7:1:1178:755
C06HBa0144J05_LR355	S-MART	transcript	1	36	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:277:1259;identity=100.000000;Name=HWI-EAS337_3:7:1:277:1259
C06HBa0144J05_LR355	S-MART	transcript	101	136	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:277:1259;identity=100.000000;Name=HWI-EAS337_3:7:1:277:1259
C08HBa0165B06_LR218	S-MART	transcript	3619	3654	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:447:1231;identity=100.000000;Name=HWI-EAS337_3:7:1:447:1231
C08HBa0165B06_LR218	S-MART	transcript	3575	3610	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:447:1231;identity=100.000000;Name=HWI-EAS337_3:7:1:447:1231
C02HBa0329G05_LR52	S-MART	transcript	4746	4781	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1154:1517;identity=100.000000;Name=HWI-EAS337_3:7:1:1154:1517
C02HBa0329G05_LR52	S-MART	transcript	4680	4715	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1154:1517;identity=100.000000;Name=HWI-EAS337_3:7:1:1154:1517
C04HBa80D3_LR100	S-MART	transcript	423	458	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:164:1869;identity=100.000000;Name=HWI-EAS337_3:7:1:164:1869
C04HBa80D3_LR100	S-MART	transcript	397	432	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:164:1869;identity=100.000000;Name=HWI-EAS337_3:7:1:164:1869
C01HBa0216G16_LR11	S-MART	transcript	648	683	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:415:1194;identity=100.000000;Name=HWI-EAS337_3:7:1:415:1194
C01HBa0216G16_LR11	S-MART	transcript	511	546	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=1.000000;ID=HWI-EAS337_3:7:1:415:1194;identity=97.222222;Name=HWI-EAS337_3:7:1:415:1194
C05HBa0145P19_LR136	S-MART	transcript	3686	3721	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=2.000000;ID=HWI-EAS337_3:7:1:645:1892;identity=94.444444;Name=HWI-EAS337_3:7:1:645:1892
C05HBa0145P19_LR136	S-MART	transcript	3573	3608	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:645:1892;identity=100.000000;Name=HWI-EAS337_3:7:1:645:1892
C08HBa0012O06_LR211	S-MART	transcript	1768	1803	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=1.000000;ID=HWI-EAS337_3:7:1:33:1446;identity=97.222222;Name=HWI-EAS337_3:7:1:33:1446
C08HBa0012O06_LR211	S-MART	transcript	1649	1684	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:33:1446;identity=100.000000;Name=HWI-EAS337_3:7:1:33:1446
C09HBa0194K19_LR362	S-MART	transcript	9168	9203	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1194:1427;identity=100.000000;Name=HWI-EAS337_3:7:1:1194:1427
C09HBa0194K19_LR362	S-MART	transcript	9302	9337	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1194:1427;identity=100.000000;Name=HWI-EAS337_3:7:1:1194:1427
C09SLm0018L06_LR366	S-MART	transcript	5034	5069	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:624:1913;identity=100.000000;Name=HWI-EAS337_3:7:1:624:1913
C09SLm0018L06_LR366	S-MART	transcript	5131	5166	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:624:1913;identity=100.000000;Name=HWI-EAS337_3:7:1:624:1913
C09SLe0085A10_LR364	S-MART	transcript	6700	6735	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:437:1202;identity=100.000000;Name=HWI-EAS337_3:7:1:437:1202
C09SLe0085A10_LR364	S-MART	transcript	6558	6593	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:437:1202;identity=100.000000;Name=HWI-EAS337_3:7:1:437:1202
C09HBa0113I06_LR360	S-MART	transcript	1764	1799	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1386:1787;identity=100.000000;Name=HWI-EAS337_3:7:1:1386:1787
C09HBa0113I06_LR360	S-MART	transcript	1717	1752	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1386:1787;identity=100.000000;Name=HWI-EAS337_3:7:1:1386:1787
C11HBa0143O06_LR374	S-MART	transcript	8925	8960	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:227:1155;identity=100.000000;Name=HWI-EAS337_3:7:1:227:1155
C11HBa0143O06_LR374	S-MART	transcript	8876	8911	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:227:1155;identity=100.000000;Name=HWI-EAS337_3:7:1:227:1155
C06HBa0066D13_LR353	S-MART	transcript	6619	6654	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:472:1025;identity=100.000000;Name=HWI-EAS337_3:7:1:472:1025
C06HBa0066D13_LR353	S-MART	transcript	6559	6594	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:472:1025;identity=100.000000;Name=HWI-EAS337_3:7:1:472:1025
C07SLe0099J13_LR193	S-MART	transcript	3528	3563	.	+	.	quality=37;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:220:1482;identity=100.000000;Name=HWI-EAS337_3:7:1:220:1482
C07SLe0099J13_LR193	S-MART	transcript	3660	3695	.	-	.	quality=36;bestRegion=(self);nbGaps=0;nbOccurrences=3;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:220:1482;identity=100.000000;Name=HWI-EAS337_3:7:1:220:1482
C07SLm0140K05_LR206	S-MART	transcript	1614	1649	.	+	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1699:1966;identity=100.000000;Name=HWI-EAS337_3:7:1:1699:1966
C07SLm0140K05_LR206	S-MART	transcript	1659	1694	.	-	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1699:1966;identity=100.000000;Name=HWI-EAS337_3:7:1:1699:1966
C07HBa0224G23_LR186	S-MART	transcript	3761	3796	.	-	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:547:1084;identity=100.000000;Name=HWI-EAS337_3:7:1:547:1084
C07HBa0224G23_LR186	S-MART	transcript	3672	3707	.	+	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:547:1084;identity=100.000000;Name=HWI-EAS337_3:7:1:547:1084
C02HBa0291P19_LR48	S-MART	transcript	131	166	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:464:1097;identity=100.000000;Name=HWI-EAS337_3:7:1:464:1097
C02HBa0291P19_LR48	S-MART	transcript	269	304	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:464:1097;identity=100.000000;Name=HWI-EAS337_3:7:1:464:1097
C12SLm103K8_LR380	S-MART	transcript	7346	7381	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:171:1480;identity=100.000000;Name=HWI-EAS337_3:7:1:171:1480
C12SLm103K8_LR380	S-MART	transcript	7390	7425	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:171:1480;identity=100.000000;Name=HWI-EAS337_3:7:1:171:1480
C11HBa0143O06_LR374	S-MART	transcript	7925	7960	.	-	.	quality=37;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:293:1251;identity=100.000000;Name=HWI-EAS337_3:7:1:293:1251
C02HBa0167J21_LR39	S-MART	transcript	1972	2007	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:647:1863;identity=100.000000;Name=HWI-EAS337_3:7:1:647:1863
C02HBa0167J21_LR39	S-MART	transcript	1830	1865	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:647:1863;identity=100.000000;Name=HWI-EAS337_3:7:1:647:1863
C12HBa326K10_LR306	S-MART	transcript	3066	3101	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:263:1275;identity=100.000000;Name=HWI-EAS337_3:7:1:263:1275
C12HBa326K10_LR306	S-MART	transcript	2978	3013	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:263:1275;identity=100.000000;Name=HWI-EAS337_3:7:1:263:1275
C04HBa68N5_LR343	S-MART	transcript	1066	1101	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:319:1275;identity=100.000000;Name=HWI-EAS337_3:7:1:319:1275
C04HBa68N5_LR343	S-MART	transcript	1246	1281	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:319:1275;identity=100.000000;Name=HWI-EAS337_3:7:1:319:1275
C06HBa0066D13_LR353	S-MART	transcript	2444	2479	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1203:1470;identity=100.000000;Name=HWI-EAS337_3:7:1:1203:1470
C06HBa0066D13_LR353	S-MART	transcript	2286	2321	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1203:1470;identity=100.000000;Name=HWI-EAS337_3:7:1:1203:1470
C12HBa93P12_LR312	S-MART	transcript	461	496	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:415:1242;identity=100.000000;Name=HWI-EAS337_3:7:1:415:1242
C12HBa93P12_LR312	S-MART	transcript	566	601	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:415:1242;identity=100.000000;Name=HWI-EAS337_3:7:1:415:1242
C04HBa219H8_LR109	S-MART	transcript	8651	8686	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1160:1471;identity=100.000000;Name=HWI-EAS337_3:7:1:1160:1471
C04HBa219H8_LR109	S-MART	transcript	8715	8750	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1160:1471;identity=100.000000;Name=HWI-EAS337_3:7:1:1160:1471
C04HBa8K13_LR338	S-MART	transcript	4606	4641	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:42:1475;identity=100.000000;Name=HWI-EAS337_3:7:1:42:1475
C04HBa8K13_LR338	S-MART	transcript	4855	4890	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:42:1475;identity=100.000000;Name=HWI-EAS337_3:7:1:42:1475
C09SLm0143I09_LR365	S-MART	transcript	5113	5148	.	+	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:155:1439;identity=100.000000;Name=HWI-EAS337_3:7:1:155:1439
C09SLm0143I09_LR365	S-MART	transcript	5142	5177	.	-	.	quality=0;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:155:1439;identity=100.000000;Name=HWI-EAS337_3:7:1:155:1439
C02HBa0185P07_LR40	S-MART	transcript	4733	4768	.	-	.	quality=29;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1164:1447;identity=100.000000;Name=HWI-EAS337_3:7:1:1164:1447
C02HBa0185P07_LR40	S-MART	transcript	4702	4737	.	+	.	quality=29;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=10.000000;ID=HWI-EAS337_3:7:1:1164:1447;identity=72.413793;Name=HWI-EAS337_3:7:1:1164:1447
C11HBa0096D22_LR288	S-MART	transcript	8839	8874	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:277:1169;identity=100.000000;Name=HWI-EAS337_3:7:1:277:1169
C11HBa0096D22_LR288	S-MART	transcript	8683	8718	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:277:1169;identity=100.000000;Name=HWI-EAS337_3:7:1:277:1169
C06HBa0304P16_LR358	S-MART	transcript	5892	5927	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:359:1249;identity=100.000000;Name=HWI-EAS337_3:7:1:359:1249
C06HBa0304P16_LR358	S-MART	transcript	6054	6089	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:359:1249;identity=100.000000;Name=HWI-EAS337_3:7:1:359:1249
C02HBa0185P07_LR40	S-MART	transcript	5684	5719	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1230:1425;identity=100.000000;Name=HWI-EAS337_3:7:1:1230:1425
C02HBa0185P07_LR40	S-MART	transcript	5550	5585	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1230:1425;identity=100.000000;Name=HWI-EAS337_3:7:1:1230:1425
C04HBa6E18_LR87	S-MART	transcript	4296	4331	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1526:1772;identity=100.000000;Name=HWI-EAS337_3:7:1:1526:1772
C04HBa6E18_LR87	S-MART	transcript	4170	4205	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1526:1772;identity=100.000000;Name=HWI-EAS337_3:7:1:1526:1772
C11HBa0096D22_LR288	S-MART	transcript	5172	5207	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=1.000000;ID=HWI-EAS337_3:7:1:1663:896;identity=97.222222;Name=HWI-EAS337_3:7:1:1663:896
C11HBa0096D22_LR288	S-MART	transcript	5303	5338	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:1663:896;identity=100.000000;Name=HWI-EAS337_3:7:1:1663:896
C05HBa0145P19_LR136	S-MART	transcript	8486	8521	.	+	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:382:1159;identity=100.000000;Name=HWI-EAS337_3:7:1:382:1159
C05HBa0145P19_LR136	S-MART	transcript	8577	8612	.	-	.	quality=60;bestRegion=(self);nbGaps=0;nbOccurrences=1;nbMismatches=0.000000;ID=HWI-EAS337_3:7:1:382:1159;identity=100.000000;Name=HWI-EAS337_3:7:1:382:1159
C06HBa0144J05_LR355	S-MART	transcript	483	518	.	-	.	quality=15;bestRegion=(self);nbGaps=0;nbOccurrences=2;nbMismatches=1.000000;ID=HWI-EAS337_3:7:1:113:1855;identity=97.222222;Name=HWI-EAS337_3:7:1:113:1855
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