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view commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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#                                                                                        --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name                       accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- -----             -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
DNA_pol_B_2          PF03175.5    531 Polinton-1_DY:classII:Polinton_1 -           4927   3.7e-06   24.2  16.0   1   3   1.4e-09   3.7e-06   24.2  11.1    13   252   992  1214   987  1218 0.76 DNA polymerase type B, organellar and viral
DNA_pol_B_2          PF03175.5    531 Polinton-1_DY:classII:Polinton_1 -           4927   3.7e-06   24.2  16.0   2   3      0.11   2.9e+02   -2.0   0.2   393   433  1367  1397  1364  1398 0.85 DNA polymerase type B, organellar and viral
DNA_pol_B_2          PF03175.5    531 Polinton-1_DY:classII:Polinton_1 -           4927   3.7e-06   24.2  16.0   3   3      0.33   8.5e+02   -3.5   0.2   175   193  2832  2850  2827  2852 0.85 DNA polymerase type B, organellar and viral
ASFV_p27             PF06556.3    131 Polinton-1_DY:classII:Polinton_1 -           4927       2.4    5.8   1.6   1   1    0.0023         6    4.5   1.1    59    74  2633  2648  2626  2652 0.90 IAP-like protein p27 C-terminus
Ribosomal_S4         PF00163.11   110 Polinton-1_DY:classII:Polinton_1 -           4927       5.5    5.7   1.1   1   1    0.0068        18    4.1   0.7    39    72  3008  3041  3002  3043 0.92 Ribosomal protein S4/S9 N-terminal domain
Homo_sperm_syn       PF06408.3    487 Polinton-1_DY:classII:Polinton_1 -           4927       6.3    2.4   0.3   1   1    0.0034       8.8    2.0   0.2    49    68  3966  3985  3960  3987 0.88 Homospermidine synthase
rve                  PF00665.18   169 Polinton-1_DY:classII:Polinton_4 -           4927   5.4e-30  103.7   1.8   1   2       0.7   2.4e+03   -3.3   0.0    50    78  2742  2766  2739  2766 0.80 Integrase core domain
rve                  PF00665.18   169 Polinton-1_DY:classII:Polinton_4 -           4927   5.4e-30  103.7   1.8   2   2   1.9e-33   6.7e-30  103.4   0.7     4   168  2951  3101  2947  3102 0.92 Integrase core domain
Chromo               PF00385.16    69 Polinton-1_DY:classII:Polinton_4 -           4927   3.3e-06   26.0   0.0   1   1   2.5e-09   8.5e-06   24.7   0.0     4    51  3198  3228  3195  3239 0.75 'chromo' (CHRromatin Organisation MOdifier) domain
GARS_A               PF01071.11   208 Polinton-1_DY:classII:Polinton_4 -           4927       7.6    3.0   0.7   1   1    0.0031        11    2.5   0.5   196   204  2117  2125  2117  2125 0.95 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain