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view commons/pyRepetUnit/hmmer/profilsSearchInTEClassifier/tests/datas/DummyRepbase_aa.fa @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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>GYPSY11_AG1p:classI:LTR_retrotransposon AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDRTYDQVRQLNKCYRLCALTTLRNN TKELYDEIQELLRKHESSIKDEILTTLVKKSRHLYYEINKCIKIHFERHPDSLNTTLSEN QFDITIETKSDKMADIIELIKITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENRETII ELVLGRLTGKARIVVGEAPKSIEDIVNKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGS IIEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLKDGETKIIMRSSKFETLHEAI EQAVKLELEDRTKKGKNEQTKILYSNATRNNRGYGNNYQGRNNYNRFTNNNNNRYQTQNP PRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANRQNNSNRNQYVQSNQRNNSNLQNNRAP IHNTVTAEEQNNFLGQPQASENTQY >GYPSY10_AG2p:classI:LTR_retrotransposon AIRQPKFFRATRATKSSALHSGGDPEPTGGPALHKPIRATYTINVQKSNFIKTRLGLADS ICNLFVDSGSDISIIKGNKVRPTQTYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQ QLFHIVPDNFKIPADGILGRDFFMDHRCIINYDTWIFSVKHDGEFLETPIEDTINDKTLI PPRCEVIRKLDKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNIS HIKTIPLNEFEIVKTNNHKNENRLAIIKELIRKENISEDTDTSFEQLLLSYNDIFHLPND HLTTNNFYKQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIEKMLQDDVIEHSVSHYNSPIL LVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILDQLGRAKFFSTLDLMSGFHQI PLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVV VGASENHHLKNLEKVFDRLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSI KNYPIPQNADDVRRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLK NTLISPQVLQYPDFSKPFILTTDASTMACGAVLAQEHGGKDMPICFASRTFTKGEANKAI IEKELAAIHWAIMHFKHYLYGKKFTVKTDHRPIVYLFGMKNPSSKLTRMRLDLEEFDFTV EFVKGKQNVVADALSRIKITSDEIKSINVITKSMSKPVTSDNVLGNTSESDQLKMFHALA YDEVKDLPKLESSVKKNEDTIELIGKILNKRKSKELLSVRDIHLKTDIGLQEPLLVKDFQ RRKEKSAIVQFIKNIEKKLVMKSITQLAISETDEIFKEVHPNELKQIANNHLKNIQILIY TKPQKITNEKTINDILDKVHNTPTGGHIGQYKMYKKIRREYSWNKMKKTIKEFLDKCLTC KLNKHQTKTAEPFVKTDTPNTPFEAVSIDTVGPFQKTNNNNRYAVTIQCNLTKHVTVIAI PNKEANTVARAVIEKIMLIYGTNIKKFRTDMGTEYKNEIFKNISEILKIEHKFSTPYHPQ TIGALERNHRCLNEYLRIFTNEHKDDWDDWINYYSFAYNTTPNLDHGYTPFELVFGRNER ITPNVKDTYSPLYNYDDYSKEFKYRLKIAHNRTRKHIEQVKFKLLKEQQNINQVNFEIGD QIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTEGVVQKIHKNRAIKL >ORF1p_TCN4#2:classI:LTR_retrotransposon ALLSHQKIFFDTITPIEDQSKPRLRQDTPFPEMTTPPTDKESLQRKIKQIEDERKREREE HKREMAELQAQMRGLLKREAEKRDLPPHNPATSSLPAKSESPHPPIMYDSLPQPKYSFPV LSEHADAAAIHQHISKLRSIFTLMAAGYRYEPTAFEARKLAHAAQSLTGIRHLQFLEGDG LQCRTFDDWAKAFKSAMLPLGWVSETEKKIYSLQPQLLRLDKIPLAIMDFKQWFALLKDS DSPMSEDVATHWLRNHMTPGLLAELERDFGGENQLRQASLAELLKHMEICATRLLRYQSA FAPIAPTRTPIAAVSPEASSPIDIAQWLNPRLPLPKGGAGRRARAHLASEQRCFLCRQPG HKSPDCPKRKEPTAIAAVSTFDHEEAEFEQEEGEMFAEVLATHLAPELSVPPILLECRIG TNGSPFLALFDTGATVTLVDPSLITTHQLQTYPSEQRRVVSLAGGARGPALQRRVGVEVC IQNQVFALHGYVMPLHARYKVILGLDFIRSHGLLSGASRLGNLAPDLLGPVVASVTTADG YXDLRLAILHEYHDIFPDNIGEVANYPPICDANSKVRHHINLTPGAIPFKSASYRSPHMW RQQLIEEIQKHREAGRLRPSSSPWAAPAFLVKKENGKFRFICDYRGLNKVTTPDSTPVPN VDDILHRAACGKIFAKIDLSDAFFQTLMHEPDIEKTAITTELGLFEWVVMPQGACNSPAT QQRRLNEALRGLLGDSCEAYVDDIIVWAADAEDLDKRLRAVLAALRKSGLVCSPTKSEFF RHKVKFLGHVISANHIGPDPAKLRTIASWPLPQSVKELRSFLGLLQYLRKFIPSLATHTR TLTALLPPTPAAEKAWEKQQRALRKGQSPKDVLSWVWAWSSEATAAFEILKAKVAEISGL RPLDYAAALSGECPIYLFTDASNHGTGAWLGQGPDPDHAFPVAYDSRSLSAAERNYPTHE KELLAIVRALKLWRPLLLDVPIQVQTDHFTLKWFLQQRDLSERQKRWLGXLSRFDLRIDH ISGVNNFIADALSRLGGVDDEQDGMETAEVSVAVLGLLGQDTSTITKVAQGYAQDQVMGA WLQEEDRAPGVTLENVENGQGRSTSGVAMGRQAMCARYQX >Neptune2_Ap_1p:classI:LINE ANTRPVVDSENIDKYRNTAKKIGKYRNTASKVDEIPKLQKRGIRRNLLKDFDLFARRMRL KDIFSRERNKQHPFHVKSTWEPPVQQSVALETFLEEVEFELANSPSKRPKDNLSPGERRA LHNLLGDKTIIVKKADKGTTTVIMSREQKIKEGQILLNDLDNYRPLEKQMADETVEKIKQ LTTSMLTESHIDEMTVKWLSQTPNPPRIPEFYTLTKIHRPTLVGRPIISGCDGPTERISC FVDRLIQPIAQQQESYLKDSKDFINFIENTKLPKNTILASKDVTSLYTNIPQEEGITTVC KAYEDFYKNRLPIPTNFLRRMLCLILKENSFQFNKRHYLQTHGTAMGTKMAVAFANIFMA KIEKGIISKSIIKPLVWKRYIDDVFCLWDTNEDNIKEFVTRANHYHDNIKFTAEISDSEI AFLGHKSVQRREIQQRLPPSMCKRIINKQRPFNTRNFYSCHPPGVKKGFIKGEALHLLRT NSSHSTFNKNMQSFKTRLKNRGYPNEFLEKKGPX >ERV45_MD_I_2p:classI:LTR_retrotransposon ASSKHATGKLQTGPGPGPSKQWGNNCGAQSEKPIPSPTIRSLHRATPGSAGLDLCAASGL ILTPDSPPALIPTGVKGPLPEGTMGLIIGRSSVSLRGIVVTPGVIDSDFTGELQIIVQPP XKTVTIMKGQRIAQLLILPYVQTXNPILKTSRGQGGFGSSNWAFWVQEIKNSRPMKILNI SGKNIEGLLDTGADTSCIAGKHWPPTWPTKISPSNLIGIGKITNAAQSSQILTWSDGNLS GQFCPHVVPSLPVTIWGRDILSQMKVSLVTPEEDAQTPPNDEPLDFPEGPSPR