Mercurial > repos > yufei-luo > s_mart
view SMART/galaxy/changeTagName.xml @ 9:1eb55963fe39
Updated CompareOverlappingSmall*.py
author | m-zytnicki |
---|---|
date | Thu, 14 Mar 2013 05:23:05 -0400 |
parents | 769e306b7933 |
children | 440ceca58672 |
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<tool id="changeTagName" name="change tag name"> <description>Changes the name of tag of a list of transcripts.</description> <command interpreter="python"> ../Java/Python/changeTagName.py -i $formatType.inputFileName #if $formatType.FormatInputFileName == 'bed': -f bed #elif $formatType.FormatInputFileName == 'gff': -f gff #elif $formatType.FormatInputFileName == 'gff2': -f gff2 #elif $formatType.FormatInputFileName == 'gff3': -f gff3 #end if -t $Tag -n $name -o $outputFileGff </command> <inputs> <conditional name="formatType"> <param name="FormatInputFileName" type="select" label="Input File Format"> <option value="bed">bed</option> <option value="gff">gff</option> <option value="gff2">gff2</option> <option value="gff3">gff3</option> </param> <when value="bed"> <param name="inputFileName" format="bed" type="data" label="Input File"/> </when> <when value="gff"> <param name="inputFileName" format="gff" type="data" label="Input File"/> </when> <when value="gff2"> <param name="inputFileName" format="gff2" type="data" label="Input File"/> </when> <when value="gff3"> <param name="inputFileName" format="gff3" type="data" label="Input File"/> </when> </conditional> <param name="Tag" type="text" value="None" label="tag option" help="A given tag, you must choose a tag."/> <param name="name" type="text" value="None" label="name option" help="new name for the tag, you must choose a new name."/> </inputs> <outputs> <data name="outputFileGff" format="gff3" label="[changeTagName] Output File"/> </outputs> </tool>