Mercurial > repos > yufei-luo > s_mart
view commons/core/utils/PipelineStepFTests.py @ 9:1eb55963fe39
Updated CompareOverlappingSmall*.py
author | m-zytnicki |
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date | Thu, 14 Mar 2013 05:23:05 -0400 |
parents | 769e306b7933 |
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#!/usr/bin/env python # Copyright INRA (Institut National de la Recherche Agronomique) # http://www.inra.fr # http://urgi.versailles.inra.fr # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. import sys import os import shutil from commons.core.utils.FileUtils import FileUtils class PipelineStepFTests(object): def __init__(self, pipelineName, packageDir, workingDir, projectName, config = "", clean = True): self._pipelineName = pipelineName self._packageDir = packageDir self._workingDir = workingDir self._projectName = projectName self._clean = clean self._configFileName = config def run(self): self.launchStep() self.assertStep() # def replaceInFile(self, fileName, oldPattern, newPattern, newFileName = ""): # if newFileName == "": # newFileName = "%s.new" % fileName # f = open(newFileName, "w") # for line in fileinput.input(fileName, inplace=1): # newLine = line.replace(oldPattern, newPattern) # f.write(newLine) # f.close() # fileinput.close() def _checkIfFileExist(self, fileName): if not FileUtils.isRessourceExists(fileName): print "%s do not exists\n" % fileName return False return True def _printMessageAndClean(self, msg): print "%s in %s functional test\n" % (msg, self._pipelineName) sys.stdout.flush() os.chdir("../") if self._clean: shutil.rmtree(self._workingDir) def _areTwoFilesIdenticalByScript( self, expFileName, obsFileName, scriptName): cmd = "%s -v 1 -r %s -t %s 2>/dev/null" % (scriptName, expFileName, obsFileName) log = os.system(cmd) print sys.stdout.flush() if log != 0: return False else: return True