Mercurial > repos > yufei-luo > s_mart
view smart_toolShed/SMART/Java/Python/misc/MultipleRPlotter.py @ 4:1fc014126d55
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author | yufei-luo |
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date | Fri, 18 Jan 2013 04:45:50 -0500 |
parents | e0f8dcca02ed |
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# # Copyright INRA-URGI 2009-2012 # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. # import os import subprocess import random import math from SMART.Java.Python.misc.RPlotter import RPlotter NBCOLORS = 9 """ Plot multiple curves with RPlotter """ class MultipleRPlotter(object): """ Plot some curves @ivar fileName: name of the file @type fileName: string @ivar height: height of the file @type height: int @ivar width: width of the file @type width: int @ivar plots: plots to be included @type plots: list of L{RPlotter{RPlotter}} @ivar keep: keep script lines @type keep: boolean @ivar format: format of the file @type format: string """ def __init__(self, fileName, verbosity = 0, keep = False): """ Constructor @param fileName: name of the file to produce @type fileName: string @param verbosity: verbosity @type verbosity: int @param keep: keep temporary files @type keep: boolean """ self.fileName = fileName self.verbosity = verbosity self.keep = keep self.format = "png" self.width = 1000 self.height = 500 self.plots = [] self.scriptFileName = "tmpScript-%d.R" % (os.getpid()) def __del__(self): """ Destructor Remove script files """ if not self.keep: if os.path.exists(self.scriptFileName): os.remove(self.scriptFileName) outputFileName = "%sout" % (self.scriptFileName) if os.path.exists(outputFileName): os.remove(outputFileName) def setFormat(self, format): """ Set the format of the picture @param format: the format @type format: string """ if format not in ("png", "pdf", "jpeg", "bmp", "tiff"): raise Exception("Format '%s' is not supported by RPlotter" % (format)) self.format = format def setWidth(self, width): """ Set the dimensions of the image produced @param width: width of the image @type width: int """ self.width = width def setHeight(self, height): """ Set the dimensions of the image produced @param height: heigth of the image @type height: int """ self.height = height def setImageSize(self, width, height): """ Set the dimensions of the image produced @param width: width of the image @type width: int @param height: heigth of the image @type height: int """ self.width = width self.height = height def addPlot(self, plot): """ Add a plot @param plots: plot to be included @type plots: L{RPlotter{RPlotter}} """ self.plots.append(plot) def plot(self): """ Plot the figures """ scriptHandle = open(self.scriptFileName, "w") scriptHandle.write("library(RColorBrewer)\n") scriptHandle.write("colorPanel = brewer.pal(n=%d, name=\"Set1\")\n" % (NBCOLORS)) scriptHandle.write("%s(%s = \"%s\", width = %d, height = %d, bg = \"white\")\n" % (self.format, "filename" if self.format != "pdf" else "file", self.fileName, self.width, self.height)) scriptHandle.write("par(mfrow=c(%d, 1))\n" % (len(self.plots))) for plot in self.plots: scriptHandle.write(plot.getScript()) scriptHandle.write("dev.off()\n") scriptHandle.close() rCommand = "R" if "SMARTRPATH" in os.environ: rCommand = os.environ["SMARTRPATH"] command = "\"%s\" CMD BATCH %s" % (rCommand, self.scriptFileName) status = subprocess.call(command, shell=True) if status != 0: self.keep = True raise Exception("Problem with the execution of script file %s, status is: %s" % (self.scriptFileName, status))