Mercurial > repos > yufei-luo > s_mart
view commons/core/sql/ITableSeqAdaptator.py @ 11:2da30502c2f1
Updated CompareOverlappingSmallQuery.xml
author | m-zytnicki |
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date | Thu, 14 Mar 2013 05:37:08 -0400 |
parents | 769e306b7933 |
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# Copyright INRA (Institut National de la Recherche Agronomique) # http://www.inra.fr # http://urgi.versailles.inra.fr # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. ## Interface for TableSeqAdaptator # class ITableSeqAdaptator(object): ## Retrieve all the distinct accession names in a list. # # @return lAccessions list of accessions # # @warning old name was getListAccession # def getAccessionsList( self ): pass ## Save sequences in a fasta file from a list of accession names. # # @param lAccessions list of accessions # @param outFileName string Fasta file # # @warning old name saveListAccessionInFastaFile # def saveAccessionsListInFastaFile( self, lAccessions, outFileName ): pass ## insert bioseq instance # # @param seq bioseq # @param delayed boolean must the insert be delayed # # @warning old name was insASeq # def insert(self, seq, delayed = False): pass