X	S-MART	transcript	559416	566828	.	+	.	seqedit=false;p_id=P3233;gene_id=YJR066W;tss_id=TSS6291;nbOverlaps=0;ID=YJR066W;Name=TOR1
X	S-MART	transcript	567019	567444	.	-	.	seqedit=false;p_id=P5345;gene_id=YJR067C;tss_id=TSS1719;nbOverlaps=0;ID=YJR067C;Name=YAE1
X	S-MART	transcript	567643	568704	.	+	.	seqedit=false;p_id=P3144;gene_id=YJR068W;tss_id=TSS5398;nbOverlaps=0;ID=YJR068W;Name=RFC2
X	S-MART	transcript	568806	569399	.	-	.	seqedit=false;p_id=P860;gene_id=YJR069C;tss_id=TSS4309;nbOverlaps=0;ID=YJR069C;Name=HAM1
X	S-MART	transcript	569621	570598	.	-	.	seqedit=false;p_id=P6450;gene_id=YJR070C;tss_id=TSS1494;nbOverlaps=0;ID=YJR070C;Name=LIA1
X	S-MART	transcript	570967	572124	.	-	.	seqedit=false;p_id=P5586;gene_id=YJR072C;tss_id=TSS6083;nbOverlaps=0;ID=YJR072C;Name=NPA3
X	S-MART	transcript	570405	570773	.	+	.	seqedit=false;p_id=P6019;gene_id=YJR071W;tss_id=TSS738;nbOverlaps=0;ID=YJR071W;Name=YJR071W
XV	S-MART	transcript	80348	81190	.	+	.	seqedit=false;p_id=P4151;gene_id=YOL127W;tss_id=TSS4223;nbOverlaps=0;ID=YOL127W;Name=RPL25
XV	S-MART	exon	80348	80360	.	+	.	ID=YOL127W-exon1;Name=RPL25-exon1;Parent=YOL127W
XV	S-MART	exon	80775	81190	.	+	.	ID=YOL127W-exon2;Name=RPL25-exon2;Parent=YOL127W
X	S-MART	transcript	572315	572935	.	-	.	seqedit=false;p_id=P2012;gene_id=YJR073C;tss_id=TSS710;nbOverlaps=0;ID=YJR073C;Name=OPI3
VI	S-MART	transcript	157916	158007	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)F;tss_id=TSS3380;nbOverlaps=184;ID=tF(GAA)F;Name=tF(GAA)F
VI	S-MART	exon	157916	157951	.	-	.	ID=tF(GAA)F-exon1;Name=tF(GAA)F-exon1;Parent=tF(GAA)F
VI	S-MART	exon	157971	158007	.	-	.	ID=tF(GAA)F-exon2;Name=tF(GAA)F-exon2;Parent=tF(GAA)F
X	S-MART	transcript	573095	573751	.	+	.	seqedit=false;p_id=P5576;gene_id=YJR074W;tss_id=TSS2929;nbOverlaps=0;ID=YJR074W;Name=MOG1
X	S-MART	transcript	573981	575171	.	+	.	seqedit=false;p_id=P1330;gene_id=YJR075W;tss_id=TSS857;nbOverlaps=0;ID=YJR075W;Name=HOC1
X	S-MART	transcript	575354	576601	.	-	.	seqedit=false;p_id=P1404;gene_id=YJR076C;tss_id=TSS1037;nbOverlaps=0;ID=YJR076C;Name=CDC11
X	S-MART	transcript	577255	578190	.	-	.	seqedit=false;p_id=P1673;gene_id=YJR077C;tss_id=TSS2801;nbOverlaps=0;ID=YJR077C;Name=MIR1
X	S-MART	transcript	578860	580221	.	+	.	seqedit=false;p_id=P2480;gene_id=YJR078W;tss_id=TSS3796;nbOverlaps=0;ID=YJR078W;Name=BNA2
X	S-MART	transcript	580432	581616	.	-	.	seqedit=false;p_id=P3568;gene_id=YJR080C;tss_id=TSS3503;nbOverlaps=0;ID=YJR080C;Name=AIM24
X	S-MART	transcript	580205	581239	.	+	.	seqedit=false;p_id=P2074;gene_id=YJR079W;tss_id=TSS3170;nbOverlaps=0;ID=YJR079W;Name=YJR079W
X	S-MART	exon	580205	580347	.	+	.	ID=YJR079W-exon1;Name=YJR079W-exon1;Parent=YJR079W
X	S-MART	exon	581053	581239	.	+	.	ID=YJR079W-exon2;Name=YJR079W-exon2;Parent=YJR079W
X	S-MART	transcript	581914	582255	.	-	.	seqedit=false;p_id=P5333;gene_id=YJR082C;tss_id=TSS407;nbOverlaps=0;ID=YJR082C;Name=EAF6
X	S-MART	transcript	582608	583537	.	-	.	seqedit=false;p_id=P1588;gene_id=YJR083C;tss_id=TSS3054;nbOverlaps=0;ID=YJR083C;Name=ACF4
X	S-MART	transcript	586068	586400	.	+	.	seqedit=false;p_id=P636;gene_id=YJR086W;tss_id=TSS1801;nbOverlaps=0;ID=YJR086W;Name=STE18
X	S-MART	transcript	583733	585004	.	+	.	seqedit=false;p_id=P6689;gene_id=YJR084W;tss_id=TSS4164;nbOverlaps=0;ID=YJR084W;Name=YJR084W
X	S-MART	transcript	585120	585437	.	-	.	seqedit=false;p_id=P4342;gene_id=YJR085C;tss_id=TSS1798;nbOverlaps=0;ID=YJR085C;Name=YJR085C
X	S-MART	transcript	586495	587373	.	-	.	seqedit=false;p_id=P5189;gene_id=YJR088C;tss_id=TSS5912;nbOverlaps=0;ID=YJR088C;Name=EMC2
X	S-MART	transcript	586400	586750	.	+	.	seqedit=false;p_id=P5459;gene_id=YJR087W;tss_id=TSS2614;nbOverlaps=0;ID=YJR087W;Name=YJR087W
X	S-MART	transcript	587718	590582	.	+	.	seqedit=false;p_id=P2527;gene_id=YJR089W;tss_id=TSS2068;nbOverlaps=0;ID=YJR089W;Name=BIR1
XV	S-MART	transcript	78352	79479	.	-	.	seqedit=false;p_id=P6377;gene_id=YOL128C;tss_id=TSS3378;nbOverlaps=0;ID=YOL128C;Name=YGK3
X	S-MART	transcript	590872	594327	.	-	.	seqedit=false;p_id=P4437;gene_id=YJR090C;tss_id=TSS5210;nbOverlaps=0;ID=YJR090C;Name=GRR1
X	S-MART	transcript	595061	598336	.	-	.	seqedit=false;p_id=P2176;gene_id=YJR091C;tss_id=TSS1713;nbOverlaps=0;ID=YJR091C;Name=JSN1
X	S-MART	transcript	598735	603078	.	+	.	seqedit=false;p_id=P5529;gene_id=YJR092W;tss_id=TSS4746;nbOverlaps=0;ID=YJR092W;Name=BUD4
X	S-MART	transcript	603220	604203	.	-	.	seqedit=false;p_id=P2094;gene_id=YJR093C;tss_id=TSS3884;nbOverlaps=0;ID=YJR093C;Name=FIP1
X	S-MART	transcript	604569	605651	.	-	.	seqedit=false;p_id=P5748;gene_id=YJR094C;tss_id=TSS300;nbOverlaps=0;ID=YJR094C;Name=IME1
X	S-MART	transcript	608305	608858	.	+	.	seqedit=false;p_id=P3806;gene_id=YJR094W-A;tss_id=TSS3080;nbOverlaps=0;ID=YJR094W-A;Name=RPL43B
X	S-MART	exon	608305	608306	.	+	.	ID=YJR094W-A-exon1;Name=RPL43B-exon1;Parent=YJR094W-A
X	S-MART	exon	608582	608858	.	+	.	ID=YJR094W-A-exon2;Name=RPL43B-exon2;Parent=YJR094W-A
XV	S-MART	transcript	77560	78114	.	+	.	seqedit=false;p_id=P2818;gene_id=YOL129W;tss_id=TSS1079;nbOverlaps=0;ID=YOL129W;Name=VPS68
X	S-MART	transcript	609773	610741	.	+	.	seqedit=false;p_id=P2458;gene_id=YJR095W;tss_id=TSS3722;nbOverlaps=0;ID=YJR095W;Name=SFC1
X	S-MART	transcript	612413	612931	.	+	.	seqedit=false;p_id=P3123;gene_id=YJR097W;tss_id=TSS753;nbOverlaps=0;ID=YJR097W;Name=JJJ3
X	S-MART	transcript	611195	612043	.	+	.	seqedit=false;p_id=P6256;gene_id=YJR096W;tss_id=TSS4086;nbOverlaps=0;ID=YJR096W;Name=YJR096W
X	S-MART	transcript	615576	616286	.	+	.	seqedit=false;p_id=P592;gene_id=YJR099W;tss_id=TSS2034;nbOverlaps=0;ID=YJR099W;Name=YUH1
XV	S-MART	transcript	74400	76979	.	+	.	seqedit=false;p_id=P6691;gene_id=YOL130W;tss_id=TSS1367;nbOverlaps=0;ID=YOL130W;Name=ALR1
X	S-MART	transcript	613186	615156	.	-	.	seqedit=false;p_id=P3545;gene_id=YJR098C;tss_id=TSS4289;nbOverlaps=0;ID=YJR098C;Name=YJR098C
X	S-MART	transcript	616351	617334	.	-	.	seqedit=false;p_id=P3379;gene_id=YJR100C;tss_id=TSS3226;nbOverlaps=0;ID=YJR100C;Name=AIM25
X	S-MART	transcript	618234	619034	.	+	.	seqedit=false;p_id=P5157;gene_id=YJR101W;tss_id=TSS6902;nbOverlaps=0;ID=YJR101W;Name=RSM26
III	S-MART	transcript	191834	193018	.	-	.	seqedit=false;p_id=P3801;gene_id=YCR035C;tss_id=TSS546;nbOverlaps=0;ID=YCR035C;Name=RRP43
X	S-MART	transcript	619157	619765	.	-	.	seqedit=false;p_id=P4672;gene_id=YJR102C;tss_id=TSS3001;nbOverlaps=0;ID=YJR102C;Name=VPS25
X	S-MART	transcript	620754	622490	.	+	.	seqedit=false;p_id=P5780;gene_id=YJR103W;tss_id=TSS3552;nbOverlaps=0;ID=YJR103W;Name=URA8
X	S-MART	transcript	622550	623014	.	-	.	seqedit=false;p_id=P3871;gene_id=YJR104C;tss_id=TSS1228;nbOverlaps=0;ID=YJR104C;Name=SOD1
XV	S-MART	transcript	71300	72715	.	+	.	seqedit=false;p_id=P3664;gene_id=YOL132W;tss_id=TSS1032;nbOverlaps=0;ID=YOL132W;Name=GAS4
X	S-MART	transcript	623581	624603	.	+	.	seqedit=false;p_id=P4393;gene_id=YJR105W;tss_id=TSS2441;nbOverlaps=0;ID=YJR105W;Name=ADO1
X	S-MART	transcript	624838	627015	.	+	.	seqedit=false;p_id=P4240;gene_id=YJR106W;tss_id=TSS3587;nbOverlaps=0;ID=YJR106W;Name=ECM27
X	S-MART	transcript	628712	629083	.	+	.	seqedit=false;p_id=P4832;gene_id=YJR108W;tss_id=TSS5021;nbOverlaps=0;ID=YJR108W;Name=ABM1
X	S-MART	transcript	627340	628326	.	+	.	seqedit=false;p_id=P54;gene_id=YJR107W;tss_id=TSS6253;nbOverlaps=0;ID=YJR107W;Name=YJR107W
X	S-MART	transcript	629585	632941	.	-	.	seqedit=false;p_id=P5675;gene_id=YJR109C;tss_id=TSS5106;nbOverlaps=0;ID=YJR109C;Name=CPA2
X	S-MART	transcript	633615	635681	.	+	.	seqedit=false;p_id=P4790;gene_id=YJR110W;tss_id=TSS4623;nbOverlaps=0;ID=YJR110W;Name=YMR1
XV	S-MART	transcript	73031	73357	.	+	.	seqedit=false;p_id=P4010;gene_id=YOL131W;tss_id=TSS5618;nbOverlaps=0;ID=YOL131W;Name=YOL131W
X	S-MART	transcript	637030	637635	.	+	.	seqedit=false;p_id=P995;gene_id=YJR112W;tss_id=TSS1259;nbOverlaps=0;ID=YJR112W;Name=NNF1
X	S-MART	transcript	635855	636706	.	-	.	seqedit=false;p_id=P4316;gene_id=YJR111C;tss_id=TSS6671;nbOverlaps=0;ID=YJR111C;Name=YJR111C
X	S-MART	transcript	274862	278002	.	-	.	seqedit=false;p_id=P5938;gene_id=YJL084C;tss_id=TSS4125;nbOverlaps=0;ID=YJL084C;Name=ALY2
X	S-MART	transcript	637790	638168	.	+	.	seqedit=false;p_id=P3781;gene_id=YJR112W-A;tss_id=TSS4916;nbOverlaps=0;ID=YJR112W-A;Name=YJR112W-A
X	S-MART	exon	637790	637809	.	+	.	ID=YJR112W-A-exon1;Name=YJR112W-A-exon1;Parent=YJR112W-A
X	S-MART	exon	637859	638168	.	+	.	ID=YJR112W-A-exon2;Name=YJR112W-A-exon2;Parent=YJR112W-A
X	S-MART	transcript	638232	638975	.	-	.	seqedit=false;p_id=P1619;gene_id=YJR113C;tss_id=TSS7046;nbOverlaps=0;ID=YJR113C;Name=RSM7
XV	S-MART	transcript	70325	70690	.	+	.	seqedit=false;p_id=P5236;gene_id=YOL133W;tss_id=TSS814;nbOverlaps=0;ID=YOL133W;Name=HRT1
X	S-MART	transcript	640825	641664	.	+	.	seqedit=false;p_id=P6210;gene_id=YJR116W;tss_id=TSS1823;nbOverlaps=0;ID=YJR116W;Name=TDA4
X	S-MART	transcript	638659	639051	.	+	.	seqedit=false;p_id=P6692;gene_id=YJR114W;tss_id=TSS4420;nbOverlaps=0;ID=YJR114W;Name=YJR114W
X	S-MART	transcript	639942	640451	.	+	.	seqedit=false;p_id=P6419;gene_id=YJR115W;tss_id=TSS5551;nbOverlaps=0;ID=YJR115W;Name=YJR115W
X	S-MART	transcript	642007	643368	.	+	.	seqedit=false;p_id=P3264;gene_id=YJR117W;tss_id=TSS6232;nbOverlaps=0;ID=YJR117W;Name=STE24
X	S-MART	transcript	643490	644101	.	-	.	seqedit=false;p_id=P2733;gene_id=YJR118C;tss_id=TSS3361;nbOverlaps=0;ID=YJR118C;Name=ILM1
X	S-MART	transcript	644304	646490	.	-	.	seqedit=false;p_id=P2608;gene_id=YJR119C;tss_id=TSS145;nbOverlaps=0;ID=YJR119C;Name=JHD2
XV	S-MART	transcript	69376	70044	.	-	.	seqedit=false;p_id=P6107;gene_id=YOL135C;tss_id=TSS5755;nbOverlaps=0;ID=YOL135C;Name=MED7
XIII	S-MART	transcript	922641	923015	.	+	.	seqedit=false;p_id=P3973;gene_id=YMR325W;tss_id=TSS239;nbOverlaps=0;ID=YMR325W;Name=PAU19
X	S-MART	transcript	647126	647476	.	+	.	seqedit=false;p_id=P5313;gene_id=YJR120W;tss_id=TSS224;nbOverlaps=0;ID=YJR120W;Name=YJR120W
XV	S-MART	transcript	70156	70545	.	-	.	seqedit=false;p_id=P3833;gene_id=YOL134C;tss_id=TSS5834;nbOverlaps=0;ID=YOL134C;Name=YOL134C
XV	S-MART	transcript	67561	68754	.	-	.	seqedit=false;p_id=P4060;gene_id=YOL136C;tss_id=TSS95;nbOverlaps=0;ID=YOL136C;Name=PFK27
XVI	S-MART	transcript	924304	926937	.	-	.	seqedit=false;p_id=P1983;gene_id=YPR194C;tss_id=TSS1762;nbOverlaps=0;ID=YPR194C;Name=OPT2
XV	S-MART	transcript	65621	67114	.	+	.	seqedit=false;p_id=P4104;gene_id=YOL137W;tss_id=TSS2244;nbOverlaps=0;ID=YOL137W;Name=BSC6
XVI	S-MART	transcript	7933	8427	.	-	.	seqedit=false;p_id=P1599;gene_id=YPL282C;tss_id=TSS200;nbOverlaps=0;ID=YPL282C;Name=PAU22
XV	S-MART	transcript	58759	60030	.	+	.	seqedit=false;p_id=P1736;gene_id=YOL140W;tss_id=TSS657;nbOverlaps=0;ID=YOL140W;Name=ARG8
XV	S-MART	transcript	56452	58539	.	+	.	seqedit=false;p_id=P5355;gene_id=YOL141W;tss_id=TSS365;nbOverlaps=0;ID=YOL141W;Name=PPM2
XVI	S-MART	transcript	934034	935665	.	+	.	seqedit=false;p_id=P4267;gene_id=YPR198W;tss_id=TSS5332;nbOverlaps=0;ID=YPR198W;Name=SGE1
XV	S-MART	transcript	55558	56280	.	+	.	seqedit=false;p_id=P5085;gene_id=YOL142W;tss_id=TSS994;nbOverlaps=0;ID=YOL142W;Name=RRP40
XV	S-MART	transcript	54595	55104	.	-	.	seqedit=false;p_id=P1290;gene_id=YOL143C;tss_id=TSS6716;nbOverlaps=0;ID=YOL143C;Name=RIB4
XVI	S-MART	transcript	280	6007	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0;p_id=P605;gene_id=YPL283C;tss_id=TSS5428;nbOverlaps=563;ID=YPL283C;Name=YRF1-7
XVI	S-MART	exon	280	5840	.	-	.	ID=YPL283C-exon1;Name=YRF1-7-exon1;Parent=YPL283C
XVI	S-MART	exon	5989	6007	.	-	.	ID=YPL283C-exon2;Name=YRF1-7-exon2;Parent=YPL283C
XV	S-MART	transcript	53098	54552	.	+	.	seqedit=false;p_id=P1440;gene_id=YOL144W;tss_id=TSS2827;nbOverlaps=0;ID=YOL144W;Name=NOP8
XV	S-MART	transcript	49555	52788	.	-	.	seqedit=false;p_id=P1674;gene_id=YOL145C;tss_id=TSS4433;nbOverlaps=0;ID=YOL145C;Name=CTR9
X	S-MART	transcript	458077	458361	.	-	.	seqedit=false;p_id=P6402;gene_id=YJR010C-A;tss_id=TSS2924;nbOverlaps=0;ID=YJR010C-A;Name=SPC1
X	S-MART	transcript	456239	457774	.	+	.	seqedit=false;p_id=P2645;gene_id=YJR010W;tss_id=TSS3295;nbOverlaps=0;ID=YJR010W;Name=MET3
X	S-MART	transcript	460382	461593	.	+	.	seqedit=false;p_id=P6229;gene_id=YJR013W;tss_id=TSS3887;nbOverlaps=0;ID=YJR013W;Name=GPI14
X	S-MART	transcript	458641	459426	.	-	.	seqedit=false;p_id=P4359;gene_id=YJR011C;tss_id=TSS5291;nbOverlaps=0;ID=YJR011C;Name=YJR011C
X	S-MART	transcript	459795	460418	.	-	.	seqedit=false;p_id=P2915;gene_id=YJR012C;tss_id=TSS5306;nbOverlaps=0;ID=YJR012C;Name=YJR012C
XV	S-MART	transcript	48864	49448	.	+	.	seqedit=false;p_id=P4148;gene_id=YOL146W;tss_id=TSS5307;nbOverlaps=0;ID=YOL146W;Name=PSF3
X	S-MART	transcript	461829	462425	.	+	.	seqedit=false;p_id=P5152;gene_id=YJR014W;tss_id=TSS522;nbOverlaps=0;ID=YJR014W;Name=TMA22
X	S-MART	transcript	464451	466208	.	-	.	seqedit=false;p_id=P6486;gene_id=YJR016C;tss_id=TSS603;nbOverlaps=0;ID=YJR016C;Name=ILV3
X	S-MART	transcript	462721	464253	.	+	.	seqedit=false;p_id=P1160;gene_id=YJR015W;tss_id=TSS486;nbOverlaps=0;ID=YJR015W;Name=YJR015W
XVI	S-MART	transcript	927965	928294	.	-	.	seqedit=false;p_id=P5610;gene_id=YPR195C;tss_id=TSS40;nbOverlaps=0;ID=YPR195C;Name=YPR195C
XIV	S-MART	transcript	331322	332154	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:17543:13592#0--HWUSI-EAS1656_0009_FC:3:30:18058:21400#0--HWUSI-EAS1656_000;p_id=P5811;gene_id=YNL162W;tss_id=TSS5022;nbOverlaps=2067;ID=YNL162W;Name=RPL42A
XIV	S-MART	exon	331322	331325	.	+	.	ID=YNL162W-exon1;Name=RPL42A-exon1;Parent=YNL162W
XIV	S-MART	exon	331838	332154	.	+	.	ID=YNL162W-exon2;Name=RPL42A-exon2;Parent=YNL162W
X	S-MART	transcript	467232	468281	.	-	.	seqedit=false;p_id=P6525;gene_id=YJR019C;tss_id=TSS2681;nbOverlaps=0;ID=YJR019C;Name=TES1
X	S-MART	transcript	466786	467148	.	+	.	seqedit=false;p_id=P4097;gene_id=YJR018W;tss_id=TSS4870;nbOverlaps=0;ID=YJR018W;Name=YJR018W
XV	S-MART	transcript	47933	48643	.	-	.	seqedit=false;p_id=P1359;gene_id=YOL147C;tss_id=TSS4934;nbOverlaps=0;ID=YOL147C;Name=PEX11
X	S-MART	transcript	468555	469579	.	-	.	seqedit=false;p_id=P2160;gene_id=YJR021C;tss_id=TSS3107;nbOverlaps=0;ID=YJR021C;Name=REC107
X	S-MART	exon	468555	469183	.	-	.	ID=YJR021C-exon1;Name=REC107-exon1;Parent=YJR021C
X	S-MART	exon	469264	469579	.	-	.	ID=YJR021C-exon2;Name=REC107-exon2;Parent=YJR021C
X	S-MART	transcript	468001	468333	.	+	.	seqedit=false;p_id=P5588;gene_id=YJR020W;tss_id=TSS4179;nbOverlaps=0;ID=YJR020W;Name=YJR020W
X	S-MART	transcript	272478	272846	.	-	.	seqedit=false;p_id=P5784;gene_id=YJL086C;tss_id=TSS3976;nbOverlaps=0;ID=YJL086C;Name=YJL086C
X	S-MART	transcript	469784	470113	.	+	.	seqedit=false;p_id=P577;gene_id=YJR022W;tss_id=TSS2859;nbOverlaps=0;ID=YJR022W;Name=LSM8
X	S-MART	transcript	470230	470964	.	-	.	seqedit=false;p_id=P2651;gene_id=YJR024C;tss_id=TSS1191;nbOverlaps=0;ID=YJR024C;Name=MDE1
XV	S-MART	transcript	45760	47574	.	-	.	seqedit=false;p_id=P942;gene_id=YOL148C;tss_id=TSS4014;nbOverlaps=0;ID=YOL148C;Name=SPT20
X	S-MART	transcript	469804	470205	.	-	.	seqedit=false;p_id=P5244;gene_id=YJR023C;tss_id=TSS36;nbOverlaps=0;ID=YJR023C;Name=YJR023C
X	S-MART	transcript	471138	471671	.	-	.	seqedit=false;p_id=P5203;gene_id=YJR025C;tss_id=TSS6459;nbOverlaps=0;ID=YJR025C;Name=BNA1
X	S-MART	transcript	486586	490812	.	-	.	seqedit=false;p_id=P3223;gene_id=YJR031C;tss_id=TSS7003;nbOverlaps=0;ID=YJR031C;Name=GEA1
X	S-MART	transcript	472760	474082	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P2970;gene_id=YJR026W;tss_id=TSS4994;nbOverlaps=22;ID=YJR026W;Name=YJR026W
X	S-MART	transcript	472760	478028	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P217;gene_id=YJR027W;tss_id=TSS4994;nbOverlaps=40;ID=YJR027W;Name=YJR027W
X	S-MART	exon	472760	474061	.	+	.	ID=YJR027W-exon1;Name=YJR027W-exon1;Parent=YJR027W
X	S-MART	exon	474063	478028	.	+	.	ID=YJR027W-exon2;Name=YJR027W-exon2;Parent=YJR027W
XV	S-MART	transcript	44938	45633	.	+	.	seqedit=false;p_id=P5167;gene_id=YOL149W;tss_id=TSS1392;nbOverlaps=0;ID=YOL149W;Name=DCP1
X	S-MART	transcript	478344	479666	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:5:5358:16391#0--HWUSI-EAS1656_0009;p_id=P3109;gene_id=YJR028W;tss_id=TSS5425;nbOverlaps=20;ID=YJR028W;Name=YJR028W
X	S-MART	transcript	478344	483612	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P6029;gene_id=YJR029W;tss_id=TSS5425;nbOverlaps=443;ID=YJR029W;Name=YJR029W
X	S-MART	exon	478344	479644	.	+	.	ID=YJR029W-exon1;Name=YJR029W-exon1;Parent=YJR029W
X	S-MART	exon	479646	483612	.	+	.	ID=YJR029W-exon2;Name=YJR029W-exon2;Parent=YJR029W
X	S-MART	transcript	483959	486196	.	-	.	seqedit=false;p_id=P2535;gene_id=YJR030C;tss_id=TSS5545;nbOverlaps=0;ID=YJR030C;Name=YJR030C
X	S-MART	transcript	491081	492262	.	+	.	seqedit=false;p_id=P3558;gene_id=YJR032W;tss_id=TSS5530;nbOverlaps=0;ID=YJR032W;Name=CPR7
X	S-MART	transcript	492378	496451	.	-	.	seqedit=false;p_id=P2388;gene_id=YJR033C;tss_id=TSS387;nbOverlaps=0;ID=YJR033C;Name=RAV1
X	S-MART	transcript	496683	497009	.	+	.	seqedit=false;p_id=P3192;gene_id=YJR034W;tss_id=TSS5643;nbOverlaps=0;ID=YJR034W;Name=PET191
X	S-MART	transcript	497355	500612	.	+	.	seqedit=false;p_id=P919;gene_id=YJR035W;tss_id=TSS659;nbOverlaps=0;ID=YJR035W;Name=RAD26
X	S-MART	transcript	500713	503391	.	-	.	seqedit=false;p_id=P1058;gene_id=YJR036C;tss_id=TSS2049;nbOverlaps=0;ID=YJR036C;Name=HUL4
X	S-MART	transcript	507746	510085	.	+	.	seqedit=false;p_id=P343;gene_id=YJR040W;tss_id=TSS4078;nbOverlaps=0;ID=YJR040W;Name=GEF1
X	S-MART	transcript	503102	503485	.	+	.	seqedit=false;p_id=P3932;gene_id=YJR037W;tss_id=TSS5739;nbOverlaps=0;ID=YJR037W;Name=YJR037W
X	S-MART	transcript	503710	504072	.	-	.	seqedit=false;p_id=P6633;gene_id=YJR038C;tss_id=TSS2124;nbOverlaps=0;ID=YJR038C;Name=YJR038C
X	S-MART	transcript	503936	507301	.	+	.	seqedit=false;p_id=P2591;gene_id=YJR039W;tss_id=TSS5902;nbOverlaps=0;ID=YJR039W;Name=YJR039W
XVI	S-MART	transcript	931376	932788	.	+	.	seqedit=false;p_id=P6251;gene_id=YPR196W;tss_id=TSS6200;nbOverlaps=0;ID=YPR196W;Name=YPR196W
X	S-MART	transcript	510239	513763	.	-	.	seqedit=false;p_id=P2596;gene_id=YJR041C;tss_id=TSS1188;nbOverlaps=0;ID=YJR041C;Name=URB2
X	S-MART	transcript	514055	516289	.	+	.	seqedit=false;p_id=P195;gene_id=YJR042W;tss_id=TSS6708;nbOverlaps=0;ID=YJR042W;Name=NUP85
X	S-MART	transcript	516461	517513	.	-	.	seqedit=false;p_id=P4308;gene_id=YJR043C;tss_id=TSS4637;nbOverlaps=0;ID=YJR043C;Name=POL32
XV	S-MART	transcript	40748	42610	.	+	.	seqedit=false;p_id=P4526;gene_id=YOL152W;tss_id=TSS4715;nbOverlaps=0;ID=YOL152W;Name=FRE7
X	S-MART	transcript	518763	519185	.	-	.	seqedit=false;p_id=P5510;gene_id=YJR044C;tss_id=TSS4016;nbOverlaps=0;ID=YJR044C;Name=VPS55
X	S-MART	transcript	519638	521602	.	-	.	seqedit=false;p_id=P3347;gene_id=YJR045C;tss_id=TSS6600;nbOverlaps=0;ID=YJR045C;Name=SSC1
X	S-MART	transcript	268799	269815	.	+	.	seqedit=false;p_id=P2297;gene_id=YJL088W;tss_id=TSS1613;nbOverlaps=0;ID=YJL088W;Name=ARG3
X	S-MART	transcript	522048	523862	.	+	.	seqedit=false;p_id=P309;gene_id=YJR046W;tss_id=TSS6590;nbOverlaps=0;ID=YJR046W;Name=TAH11
X	S-MART	transcript	524908	525381	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:17029:8623#0--HWUSI-EAS1656_0009_FC:3:111:15167:13548#0--HWUSI-EAS1656_00;p_id=P3027;gene_id=YJR047C;tss_id=TSS5191;nbOverlaps=16;ID=YJR047C;Name=ANB1
X	S-MART	transcript	526335	526664	.	+	.	seqedit=false;p_id=P4751;gene_id=YJR048W;tss_id=TSS1439;nbOverlaps=0;ID=YJR048W;Name=CYC1
X	S-MART	transcript	526884	528476	.	-	.	seqedit=false;p_id=P3905;gene_id=YJR049C;tss_id=TSS439;nbOverlaps=0;ID=YJR049C;Name=UTR1
XV	S-MART	transcript	34658	35407	.	+	.	seqedit=false;p_id=P5887;gene_id=YOL154W;tss_id=TSS1478;nbOverlaps=0;ID=YOL154W;Name=ZPS1
X	S-MART	transcript	528697	529404	.	+	.	seqedit=false;p_id=P4890;gene_id=YJR050W;tss_id=TSS3906;nbOverlaps=0;ID=YJR050W;Name=ISY1
X	S-MART	transcript	529861	531366	.	+	.	seqedit=false;p_id=P4600;gene_id=YJR051W;tss_id=TSS6055;nbOverlaps=0;ID=YJR051W;Name=OSM1
X	S-MART	transcript	532062	533759	.	+	.	seqedit=false;p_id=P6118;gene_id=YJR052W;tss_id=TSS1548;nbOverlaps=0;ID=YJR052W;Name=RAD7
X	S-MART	transcript	534027	535751	.	+	.	seqedit=false;p_id=P6406;gene_id=YJR053W;tss_id=TSS4132;nbOverlaps=0;ID=YJR053W;Name=BFA1
X	S-MART	transcript	538772	539266	.	+	.	seqedit=false;p_id=P3971;gene_id=YJR055W;tss_id=TSS4423;nbOverlaps=0;ID=YJR055W;Name=HIT1
X	S-MART	transcript	536056	537549	.	+	.	seqedit=false;p_id=P5992;gene_id=YJR054W;tss_id=TSS5555;nbOverlaps=0;ID=YJR054W;Name=YJR054W
XV	S-MART	transcript	36822	38567	.	-	.	seqedit=false;gene_id=YOL153C;tss_id=TSS2320;nbOverlaps=0;ID=YOL153C;Name=YOL153C
X	S-MART	transcript	544062	544712	.	+	.	seqedit=false;p_id=P5506;gene_id=YJR057W;tss_id=TSS5453;nbOverlaps=0;ID=YJR057W;Name=CDC8
X	S-MART	transcript	541792	542502	.	-	.	seqedit=false;p_id=P2888;gene_id=YJR056C;tss_id=TSS429;nbOverlaps=0;ID=YJR056C;Name=YJR056C
X	S-MART	transcript	544732	545175	.	-	.	seqedit=false;p_id=P2964;gene_id=YJR058C;tss_id=TSS3736;nbOverlaps=0;ID=YJR058C;Name=APS2
X	S-MART	transcript	545787	548243	.	+	.	seqedit=false;p_id=P1392;gene_id=YJR059W;tss_id=TSS3862;nbOverlaps=0;ID=YJR059W;Name=PTK2
X	S-MART	transcript	548759	549814	.	+	.	seqedit=false;p_id=P2497;gene_id=YJR060W;tss_id=TSS5946;nbOverlaps=0;ID=YJR060W;Name=CBF1
X	S-MART	transcript	553476	554849	.	-	.	seqedit=false;p_id=P888;gene_id=YJR062C;tss_id=TSS2900;nbOverlaps=0;ID=YJR062C;Name=NTA1
XV	S-MART	transcript	28703	31606	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:12854:21258#0--HWUSI-EAS1656_0009_FC:3:20:7121:2376#0--HWUSI-EAS1656_000;p_id=P4908;gene_id=YOL155C;tss_id=TSS4926;nbOverlaps=4;ID=YOL155C;Name=HPF1
X	S-MART	transcript	550511	553318	.	+	.	seqedit=false;p_id=P5385;gene_id=YJR061W;tss_id=TSS5281;nbOverlaps=0;ID=YJR061W;Name=YJR061W
X	S-MART	transcript	555195	555572	.	+	.	seqedit=false;p_id=P1799;gene_id=YJR063W;tss_id=TSS3849;nbOverlaps=0;ID=YJR063W;Name=RPA12
X	S-MART	transcript	555914	557602	.	+	.	seqedit=false;p_id=P5278;gene_id=YJR064W;tss_id=TSS3202;nbOverlaps=0;ID=YJR064W;Name=CCT5
X	S-MART	transcript	557809	559158	.	-	.	seqedit=false;p_id=P646;gene_id=YJR065C;tss_id=TSS3269;nbOverlaps=0;ID=YJR065C;Name=ARP3
VII	S-MART	transcript	497133	498034	.	-	.	seqedit=false;p_id=P4019;gene_id=YGR001C;tss_id=TSS5063;nbOverlaps=0;ID=YGR001C;Name=YGR001C
VII	S-MART	exon	497133	497365	.	-	.	ID=YGR001C-exon1;Name=YGR001C-exon1;Parent=YGR001C
VII	S-MART	exon	497459	497937	.	-	.	ID=YGR001C-exon2;Name=YGR001C-exon2;Parent=YGR001C
VII	S-MART	exon	498000	498034	.	-	.	ID=YGR001C-exon3;Name=YGR001C-exon3;Parent=YGR001C
XV	S-MART	transcript	27084	27218	.	+	.	seqedit=false;p_id=P1552;gene_id=YOL155W-A;tss_id=TSS3482;nbOverlaps=0;ID=YOL155W-A;Name=YOL155W-A
XVI	S-MART	transcript	933898	934461	.	-	.	seqedit=false;p_id=P6043;gene_id=YPR197C;tss_id=TSS5110;nbOverlaps=0;ID=YPR197C;Name=YPR197C
VII	S-MART	transcript	500132	502366	.	+	.	seqedit=false;p_id=P3150;gene_id=YGR003W;tss_id=TSS5702;nbOverlaps=0;ID=YGR003W;Name=CUL3
VII	S-MART	transcript	502938	504326	.	+	.	seqedit=false;p_id=P5092;gene_id=YGR004W;tss_id=TSS2147;nbOverlaps=0;ID=YGR004W;Name=PEX31
VII	S-MART	transcript	504657	505859	.	-	.	seqedit=false;p_id=P1105;gene_id=YGR005C;tss_id=TSS5632;nbOverlaps=0;ID=YGR005C;Name=TFG2
XV	S-MART	transcript	25273	26976	.	+	.	seqedit=false;p_id=P2609;gene_id=YOL156W;tss_id=TSS3171;nbOverlaps=0;ID=YOL156W;Name=HXT11
VII	S-MART	transcript	506070	506825	.	+	.	seqedit=false;p_id=P5630;gene_id=YGR006W;tss_id=TSS1253;nbOverlaps=0;ID=YGR006W;Name=PRP18
VII	S-MART	transcript	506969	507940	.	+	.	seqedit=false;p_id=P1716;gene_id=YGR007W;tss_id=TSS739;nbOverlaps=0;ID=YGR007W;Name=ECT1
X	S-MART	transcript	265926	268415	.	+	.	seqedit=false;p_id=P1098;gene_id=YJL089W;tss_id=TSS7004;nbOverlaps=0;ID=YJL089W;Name=SIP4
VII	S-MART	transcript	508110	508364	.	-	.	seqedit=false;p_id=P1256;gene_id=YGR008C;tss_id=TSS3772;nbOverlaps=0;ID=YGR008C;Name=STF2
VII	S-MART	transcript	509047	511002	.	-	.	seqedit=false;p_id=P4906;gene_id=YGR009C;tss_id=TSS3072;nbOverlaps=0;ID=YGR009C;Name=SEC9
VII	S-MART	transcript	511545	512732	.	+	.	seqedit=false;p_id=P404;gene_id=YGR010W;tss_id=TSS7018;nbOverlaps=0;ID=YGR010W;Name=NMA2
VII	S-MART	transcript	514554	516416	.	+	.	seqedit=false;p_id=P4887;gene_id=YGR013W;tss_id=TSS4172;nbOverlaps=0;ID=YGR013W;Name=SNU71
XV	S-MART	transcript	22525	24294	.	-	.	seqedit=false;p_id=P5481;gene_id=YOL157C;tss_id=TSS251;nbOverlaps=0;ID=YOL157C;Name=IMA2
VII	S-MART	transcript	512497	512823	.	+	.	seqedit=false;p_id=P774;gene_id=YGR011W;tss_id=TSS5388;nbOverlaps=0;ID=YGR011W;Name=YGR011W
VII	S-MART	transcript	513159	514340	.	+	.	seqedit=false;p_id=P5450;gene_id=YGR012W;tss_id=TSS5293;nbOverlaps=0;ID=YGR012W;Name=YGR012W
VII	S-MART	transcript	516943	520863	.	+	.	seqedit=false;p_id=P186;gene_id=YGR014W;tss_id=TSS507;nbOverlaps=0;ID=YGR014W;Name=MSB2
VII	S-MART	transcript	525229	526644	.	+	.	seqedit=false;p_id=P5885;gene_id=YGR019W;tss_id=TSS1233;nbOverlaps=0;ID=YGR019W;Name=UGA1
VII	S-MART	transcript	521090	522076	.	-	.	seqedit=false;p_id=P1230;gene_id=YGR015C;tss_id=TSS283;nbOverlaps=0;ID=YGR015C;Name=YGR015C
XVI	S-MART	transcript	1426	2001	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P3225;gene_id=YPL283W-A;tss_id=TSS4764;nbOverlaps=32;ID=YPL283W-A;Name=YPL283W-A
VII	S-MART	transcript	522261	522833	.	+	.	seqedit=false;p_id=P1531;gene_id=YGR016W;tss_id=TSS2883;nbOverlaps=0;ID=YGR016W;Name=YGR016W
VI	S-MART	transcript	51350	52972	.	+	.	seqedit=false;p_id=P3286;gene_id=YFL040W;tss_id=TSS43;nbOverlaps=0;ID=YFL040W;Name=YFL040W
VII	S-MART	transcript	523787	524680	.	+	.	seqedit=false;p_id=P1339;gene_id=YGR017W;tss_id=TSS210;nbOverlaps=0;ID=YGR017W;Name=YGR017W
VII	S-MART	transcript	524365	524694	.	-	.	seqedit=false;p_id=P6458;gene_id=YGR018C;tss_id=TSS6271;nbOverlaps=0;ID=YGR018C;Name=YGR018C
VII	S-MART	transcript	526973	527329	.	-	.	seqedit=false;p_id=P5239;gene_id=YGR020C;tss_id=TSS6199;nbOverlaps=0;ID=YGR020C;Name=VMA7
VII	S-MART	transcript	529264	530919	.	+	.	seqedit=false;p_id=P5400;gene_id=YGR023W;tss_id=TSS613;nbOverlaps=0;ID=YGR023W;Name=MTL1
VII	S-MART	transcript	527632	528504	.	+	.	seqedit=false;p_id=P6412;gene_id=YGR021W;tss_id=TSS1264;nbOverlaps=0;ID=YGR021W;Name=YGR021W
VII	S-MART	transcript	529257	529586	.	-	.	seqedit=false;p_id=P2363;gene_id=YGR022C;tss_id=TSS5579;nbOverlaps=0;ID=YGR022C;Name=YGR022C
XV	S-MART	transcript	15233	15505	.	-	.	seqedit=false;p_id=P5907;gene_id=YOL159C-A;tss_id=TSS2991;nbOverlaps=0;ID=YOL159C-A;Name=YOL159C-A
VII	S-MART	transcript	531883	532596	.	-	.	seqedit=false;p_id=P1475;gene_id=YGR024C;tss_id=TSS33;nbOverlaps=0;ID=YGR024C;Name=THG1
VII	S-MART	transcript	534132	534458	.	-	.	seqedit=false;p_id=P5241;gene_id=YGR027C;tss_id=TSS6329;nbOverlaps=0;ID=YGR027C;Name=RPS25A
VII	S-MART	transcript	532639	532941	.	+	.	seqedit=false;p_id=P58;gene_id=YGR025W;tss_id=TSS4505;nbOverlaps=0;ID=YGR025W;Name=YGR025W
VII	S-MART	transcript	532985	533821	.	+	.	seqedit=false;p_id=P3685;gene_id=YGR026W;tss_id=TSS6499;nbOverlaps=0;ID=YGR026W;Name=YGR026W
VII	S-MART	transcript	536057	537379	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P1352;gene_id=YGR027W-A;tss_id=TSS58;nbOverlaps=22;ID=YGR027W-A;Name=YGR027W-A
VII	S-MART	transcript	536057	541325	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P6217;gene_id=YGR027W-B;tss_id=TSS58;nbOverlaps=444;ID=YGR027W-B;Name=YGR027W-B
VII	S-MART	exon	536057	537361	.	+	.	ID=YGR027W-B-exon1;Name=YGR027W-B-exon1;Parent=YGR027W-B
VII	S-MART	exon	537363	541325	.	+	.	ID=YGR027W-B-exon2;Name=YGR027W-B-exon2;Parent=YGR027W-B
XV	S-MART	transcript	17281	17796	.	-	.	seqedit=false;p_id=P3373;gene_id=YOL159C;tss_id=TSS3672;nbOverlaps=0;ID=YOL159C;Name=YOL159C
VII	S-MART	transcript	542203	543291	.	+	.	seqedit=false;p_id=P295;gene_id=YGR028W;tss_id=TSS2251;nbOverlaps=0;ID=YGR028W;Name=MSP1
XVI	S-MART	transcript	938148	939032	.	-	.	seqedit=false;p_id=P421;gene_id=YPR199C;tss_id=TSS5206;nbOverlaps=0;ID=YPR199C;Name=ARR1
VII	S-MART	transcript	543553	544205	.	+	.	seqedit=false;p_id=P3313;gene_id=YGR029W;tss_id=TSS5732;nbOverlaps=0;ID=YGR029W;Name=ERV1
VII	S-MART	exon	543553	543638	.	+	.	ID=YGR029W-exon1;Name=ERV1-exon1;Parent=YGR029W
VII	S-MART	exon	543722	544205	.	+	.	ID=YGR029W-exon2;Name=ERV1-exon2;Parent=YGR029W
XV	S-MART	transcript	11549	11911	.	-	.	seqedit=false;p_id=P3426;gene_id=YOL161C;tss_id=TSS3988;nbOverlaps=0;ID=YOL161C;Name=PAU20
VII	S-MART	transcript	545681	546157	.	-	.	seqedit=false;p_id=P3294;gene_id=YGR030C;tss_id=TSS65;nbOverlaps=0;ID=YGR030C;Name=POP6
VII	S-MART	transcript	546809	547300	.	-	.	seqedit=false;p_id=P1739;gene_id=YGR031C-A;tss_id=TSS3931;nbOverlaps=0;ID=YGR031C-A;Name=NAG1
VII	S-MART	transcript	546441	547469	.	+	.	seqedit=false;p_id=P1894;gene_id=YGR031W;tss_id=TSS1238;nbOverlaps=0;ID=YGR031W;Name=IMO32
VII	S-MART	transcript	548264	553951	.	+	.	seqedit=false;p_id=P1132;gene_id=YGR032W;tss_id=TSS4977;nbOverlaps=0;ID=YGR032W;Name=GSC2
VII	S-MART	transcript	554248	554967	.	-	.	seqedit=false;p_id=P2130;gene_id=YGR033C;tss_id=TSS3070;nbOverlaps=0;ID=YGR033C;Name=TIM21
VII	S-MART	transcript	555812	556672	.	+	.	seqedit=false;p_id=P2375;gene_id=YGR034W;tss_id=TSS68;nbOverlaps=0;ID=YGR034W;Name=RPL26B
VII	S-MART	exon	555812	555830	.	+	.	ID=YGR034W-exon1;Name=RPL26B-exon1;Parent=YGR034W
VII	S-MART	exon	556308	556672	.	+	.	ID=YGR034W-exon2;Name=RPL26B-exon2;Parent=YGR034W
XV	S-MART	transcript	14313	14654	.	+	.	seqedit=false;p_id=P1232;gene_id=YOL160W;tss_id=TSS3892;nbOverlaps=0;ID=YOL160W;Name=YOL160W
VII	S-MART	transcript	557565	557786	.	+	.	seqedit=false;p_id=P4869;gene_id=YGR035W-A;tss_id=TSS6814;nbOverlaps=0;ID=YGR035W-A;Name=YGR035W-A
VII	S-MART	transcript	557072	557422	.	-	.	seqedit=false;p_id=P728;gene_id=YGR035C;tss_id=TSS856;nbOverlaps=0;ID=YGR035C;Name=YGR035C
VII	S-MART	transcript	558149	558868	.	-	.	seqedit=false;p_id=P4347;gene_id=YGR036C;tss_id=TSS2523;nbOverlaps=0;ID=YGR036C;Name=CAX4
XVI	S-MART	transcript	643	1125	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P4998;gene_id=YPL283W-B;tss_id=TSS6127;nbOverlaps=76;ID=YPL283W-B;Name=YPL283W-B
VII	S-MART	transcript	559731	559994	.	-	.	seqedit=false;p_id=P2341;gene_id=YGR037C;tss_id=TSS2295;nbOverlaps=0;ID=YGR037C;Name=ACB1
XV	S-MART	transcript	6175	8115	.	+	.	seqedit=false;p_id=P2809;gene_id=YOL164W;tss_id=TSS4544;nbOverlaps=0;ID=YOL164W;Name=BDS1
VII	S-MART	transcript	566145	567467	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009;p_id=P582;gene_id=YGR038C-A;tss_id=TSS7051;nbOverlaps=11;ID=YGR038C-A;Name=YGR038C-A
VII	S-MART	transcript	562199	567467	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009;p_id=P4478;gene_id=YGR038C-B;tss_id=TSS7051;nbOverlaps=17;ID=YGR038C-B;Name=YGR038C-B
VII	S-MART	exon	562199	566161	.	-	.	ID=YGR038C-B-exon1;Name=YGR038C-B-exon1;Parent=YGR038C-B
VII	S-MART	exon	566163	567467	.	-	.	ID=YGR038C-B-exon2;Name=YGR038C-B-exon2;Parent=YGR038C-B
VII	S-MART	transcript	560682	561350	.	+	.	seqedit=false;p_id=P375;gene_id=YGR038W;tss_id=TSS5964;nbOverlaps=0;ID=YGR038W;Name=ORM1
VII	S-MART	transcript	575398	576504	.	+	.	seqedit=false;p_id=P896;gene_id=YGR040W;tss_id=TSS2005;nbOverlaps=0;ID=YGR040W;Name=KSS1
XV	S-MART	transcript	10119	10766	.	+	.	seqedit=false;p_id=P6347;gene_id=YOL162W;tss_id=TSS5767;nbOverlaps=0;ID=YOL162W;Name=YOL162W
VII	S-MART	transcript	574888	575199	.	+	.	seqedit=false;p_id=P4564;gene_id=YGR039W;tss_id=TSS5969;nbOverlaps=0;ID=YGR039W;Name=YGR039W
VII	S-MART	transcript	577487	579130	.	+	.	seqedit=false;p_id=P5326;gene_id=YGR041W;tss_id=TSS52;nbOverlaps=0;ID=YGR041W;Name=BUD9
VII	S-MART	transcript	580435	581436	.	-	.	seqedit=false;p_id=P6658;gene_id=YGR043C;tss_id=TSS3324;nbOverlaps=0;ID=YGR043C;Name=NQM1
VII	S-MART	transcript	579476	580291	.	+	.	seqedit=false;p_id=P4911;gene_id=YGR042W;tss_id=TSS1497;nbOverlaps=0;ID=YGR042W;Name=YGR042W
XV	S-MART	transcript	569929	570807	.	-	.	seqedit=false;p_id=P6069;gene_id=YOR130C;tss_id=TSS532;nbOverlaps=0;ID=YOR130C;Name=ORT1
VII	S-MART	transcript	582990	583892	.	-	.	seqedit=false;p_id=P4959;gene_id=YGR044C;tss_id=TSS5980;nbOverlaps=0;ID=YGR044C;Name=RME1
VII	S-MART	transcript	584895	586052	.	+	.	seqedit=false;p_id=P2054;gene_id=YGR046W;tss_id=TSS3700;nbOverlaps=0;ID=YGR046W;Name=TAM41
XV	S-MART	transcript	9597	10106	.	+	.	seqedit=false;p_id=P3564;gene_id=YOL163W;tss_id=TSS5922;nbOverlaps=0;ID=YOL163W;Name=YOL163W
VII	S-MART	transcript	583934	584296	.	-	.	seqedit=false;p_id=P5870;gene_id=YGR045C;tss_id=TSS2386;nbOverlaps=0;ID=YGR045C;Name=YGR045C
VII	S-MART	transcript	586392	589469	.	-	.	seqedit=false;p_id=P4142;gene_id=YGR047C;tss_id=TSS5370;nbOverlaps=0;ID=YGR047C;Name=TFC4
XVI	S-MART	transcript	939279	939671	.	-	.	seqedit=false;p_id=P5929;gene_id=YPR200C;tss_id=TSS91;nbOverlaps=0;ID=YPR200C;Name=ARR2
XV	S-MART	transcript	4130	4312	.	+	.	seqedit=false;p_id=P4015;gene_id=YOL164W-A;tss_id=TSS1851;nbOverlaps=0;ID=YOL164W-A;Name=YOL164W-A
X	S-MART	transcript	261080	262552	.	-	.	seqedit=false;p_id=P3345;gene_id=YJL091C;tss_id=TSS2220;nbOverlaps=0;ID=YJL091C;Name=GWT1
XV	S-MART	transcript	1647	2078	.	-	.	seqedit=false;p_id=P3526;gene_id=YOL165C;tss_id=TSS107;nbOverlaps=0;ID=YOL165C;Name=AAD15
XVI	S-MART	transcript	744284	744355	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:12762:11255#0--HWUSI-EAS1656_0009_FC:3:105:2987:16080#0--HWUSI-EAS1656_0;gene_id=tT(UGU)P;tss_id=TSS2276;nbOverlaps=9;ID=tT(UGU)P;Name=tT(UGU)P
XVI	S-MART	transcript	556377	557837	.	+	.	seqedit=false;p_id=P3419;gene_id=YPR001W;tss_id=TSS1549;nbOverlaps=0;ID=YPR001W;Name=CIT3
XV	S-MART	transcript	585	740	.	+	.	seqedit=false;p_id=P6098;gene_id=YOL166W-A;tss_id=TSS804;nbOverlaps=0;ID=YOL166W-A;Name=YOL166W-A
XV	S-MART	transcript	1000	1338	.	-	.	seqedit=false;p_id=P2335;gene_id=YOL166C;tss_id=TSS391;nbOverlaps=0;ID=YOL166C;Name=YOL166C
XV	S-MART	transcript	326832	329033	.	+	.	seqedit=false;p_id=P2248;gene_id=YOR001W;tss_id=TSS1769;nbOverlaps=0;ID=YOR001W;Name=RRP6
XVI	S-MART	transcript	939922	941136	.	+	.	seqedit=false;p_id=P1664;gene_id=YPR201W;tss_id=TSS5203;nbOverlaps=0;ID=YPR201W;Name=ARR3
V	S-MART	transcript	469457	469530	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)E2;tss_id=TSS6141;nbOverlaps=138;ID=tV(AAC)E2;Name=tV(AAC)E2
XVI	S-MART	transcript	882983	883318	.	-	.	seqedit=false;p_id=P716;gene_id=YPR170C;tss_id=TSS3381;nbOverlaps=0;ID=YPR170C;Name=YPR170C
XV	S-MART	transcript	329417	331051	.	+	.	seqedit=false;p_id=P5446;gene_id=YOR002W;tss_id=TSS4796;nbOverlaps=0;ID=YOR002W;Name=ALG6
VII	S-MART	transcript	412294	412367	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)G1;tss_id=TSS2389;nbOverlaps=133;ID=tV(AAC)G1;Name=tV(AAC)G1
XV	S-MART	transcript	331455	332891	.	+	.	seqedit=false;p_id=P3115;gene_id=YOR003W;tss_id=TSS1756;nbOverlaps=0;ID=YOR003W;Name=YSP3
XIII	S-MART	transcript	545155	545730	.	+	.	seqedit=false;p_id=P1224;gene_id=YMR138W;tss_id=TSS1685;nbOverlaps=0;ID=YMR138W;Name=CIN4
VII	S-MART	transcript	823482	823555	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)G2;tss_id=TSS5067;nbOverlaps=133;ID=tV(AAC)G2;Name=tV(AAC)G2
XVI	S-MART	transcript	560569	560766	.	-	.	seqedit=false;p_id=P1523;gene_id=YPR002C-A;tss_id=TSS1512;nbOverlaps=0;ID=YPR002C-A;Name=YPR002C-A
XV	S-MART	transcript	333592	334356	.	+	.	seqedit=false;p_id=P1466;gene_id=YOR004W;tss_id=TSS81;nbOverlaps=0;ID=YOR004W;Name=UTP23
VII	S-MART	transcript	73829	73902	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)G3;tss_id=TSS1998;nbOverlaps=132;ID=tV(AAC)G3;Name=tV(AAC)G3
XV	S-MART	transcript	334509	337343	.	-	.	seqedit=false;p_id=P3010;gene_id=YOR005C;tss_id=TSS6989;nbOverlaps=0;ID=YOR005C;Name=DNL4
XI	S-MART	transcript	308144	308217	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)K1;tss_id=TSS3502;nbOverlaps=133;ID=tV(AAC)K1;Name=tV(AAC)K1
XV	S-MART	transcript	337680	338621	.	-	.	seqedit=false;p_id=P2352;gene_id=YOR006C;tss_id=TSS6238;nbOverlaps=0;ID=YOR006C;Name=TSR3
VIII	S-MART	transcript	85298	85371	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)H;tss_id=TSS4983;nbOverlaps=138;ID=tV(AAC)H;Name=tV(AAC)H
XV	S-MART	transcript	338938	339978	.	-	.	seqedit=false;p_id=P6158;gene_id=YOR007C;tss_id=TSS1925;nbOverlaps=0;ID=YOR007C;Name=SGT2
XII	S-MART	transcript	973395	975521	.	+	.	seqedit=false;p_id=P1831;gene_id=YLR424W;tss_id=TSS2361;nbOverlaps=0;ID=YLR424W;Name=SPP382
XII	S-MART	transcript	982894	986817	.	+	.	seqedit=false;p_id=P2723;gene_id=YLR425W;tss_id=TSS1034;nbOverlaps=0;ID=YLR425W;Name=TUS1
XII	S-MART	transcript	987062	988113	.	+	.	seqedit=false;p_id=P4636;gene_id=YLR426W;tss_id=TSS469;nbOverlaps=0;ID=YLR426W;Name=TDA5
XII	S-MART	exon	987062	987141	.	+	.	ID=YLR426W-exon1;Name=TDA5-exon1;Parent=YLR426W
XII	S-MART	exon	987213	988113	.	+	.	ID=YLR426W-exon2;Name=TDA5-exon2;Parent=YLR426W
X	S-MART	transcript	378360	378433	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)J;tss_id=TSS3536;nbOverlaps=132;ID=tV(AAC)J;Name=tV(AAC)J
XV	S-MART	transcript	341278	342414	.	-	.	seqedit=false;p_id=P5445;gene_id=YOR008C;tss_id=TSS2527;nbOverlaps=0;ID=YOR008C;Name=SLG1
XII	S-MART	transcript	988428	990440	.	+	.	seqedit=false;p_id=P2284;gene_id=YLR427W;tss_id=TSS1703;nbOverlaps=0;ID=YLR427W;Name=MAG2
XII	S-MART	transcript	990777	992732	.	+	.	seqedit=false;p_id=P1389;gene_id=YLR429W;tss_id=TSS6645;nbOverlaps=0;ID=YLR429W;Name=CRN1
XII	S-MART	transcript	990617	990961	.	-	.	seqedit=false;p_id=P1242;gene_id=YLR428C;tss_id=TSS675;nbOverlaps=0;ID=YLR428C;Name=YLR428C
XII	S-MART	transcript	993434	1000129	.	+	.	seqedit=false;p_id=P962;gene_id=YLR430W;tss_id=TSS4721;nbOverlaps=0;ID=YLR430W;Name=SEN1
XI	S-MART	transcript	379680	379753	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)K2;tss_id=TSS937;nbOverlaps=132;ID=tV(AAC)K2;Name=tV(AAC)K2
XII	S-MART	transcript	1000342	1001703	.	-	.	seqedit=false;p_id=P3747;gene_id=YLR431C;tss_id=TSS3065;nbOverlaps=0;ID=YLR431C;Name=ATG23
XII	S-MART	transcript	1002557	1004128	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:65:2976:4496#0--HWUSI-EAS1656_0009_FC:3:25:7902:10651#0--HWUSI-EAS1656_0009_;p_id=P5371;gene_id=YLR432W;tss_id=TSS6406;nbOverlaps=137;ID=YLR432W;Name=IMD3
XV	S-MART	transcript	342857	343081	.	-	.	seqedit=false;p_id=P508;gene_id=YOR008C-A;tss_id=TSS5803;nbOverlaps=0;ID=YOR008C-A;Name=YOR008C-A
XII	S-MART	transcript	1004347	1006008	.	-	.	seqedit=false;p_id=P3552;gene_id=YLR433C;tss_id=TSS5888;nbOverlaps=0;ID=YLR433C;Name=CNA1
XII	S-MART	transcript	1006378	1006995	.	+	.	seqedit=false;p_id=P5967;gene_id=YLR435W;tss_id=TSS4230;nbOverlaps=0;ID=YLR435W;Name=TSR2
XII	S-MART	transcript	1006025	1006408	.	-	.	seqedit=false;p_id=P1982;gene_id=YLR434C;tss_id=TSS1359;nbOverlaps=0;ID=YLR434C;Name=YLR434C
XII	S-MART	transcript	1007421	1011245	.	-	.	seqedit=false;p_id=P5523;gene_id=YLR436C;tss_id=TSS5160;nbOverlaps=0;ID=YLR436C;Name=ECM30
XIII	S-MART	transcript	372445	372518	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:94:15978:8492#0--HWUSI-EAS1656_0009;gene_id=tV(AAC)M1;tss_id=TSS6732;nbOverlaps=133;ID=tV(AAC)M1;Name=tV(AAC)M1
XII	S-MART	transcript	1011622	1012023	.	-	.	seqedit=false;p_id=P6299;gene_id=YLR437C;tss_id=TSS277;nbOverlaps=0;ID=YLR437C;Name=DIF1
XII	S-MART	transcript	1012459	1012686	.	-	.	seqedit=false;p_id=P2749;gene_id=YLR437C-A;tss_id=TSS5311;nbOverlaps=0;ID=YLR437C-A;Name=YLR437C-A
XV	S-MART	transcript	343929	344030	.	+	.	seqedit=false;p_id=P3282;gene_id=YOR008W-B;tss_id=TSS6148;nbOverlaps=0;ID=YOR008W-B;Name=YOR008W-B
XII	S-MART	transcript	1013909	1014178	.	-	.	seqedit=false;p_id=P711;gene_id=YLR438C-A;tss_id=TSS237;nbOverlaps=0;ID=YLR438C-A;Name=LSM3
XII	S-MART	transcript	1012501	1013775	.	+	.	seqedit=false;p_id=P2592;gene_id=YLR438W;tss_id=TSS2754;nbOverlaps=0;ID=YLR438W;Name=CAR2
XII	S-MART	transcript	1014491	1015450	.	+	.	seqedit=false;p_id=P1410;gene_id=YLR439W;tss_id=TSS2281;nbOverlaps=0;ID=YLR439W;Name=MRPL4
XII	S-MART	transcript	1015568	1017697	.	-	.	seqedit=false;p_id=P254;gene_id=YLR440C;tss_id=TSS2632;nbOverlaps=0;ID=YLR440C;Name=SEC39
XII	S-MART	transcript	687859	687932	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:94:15978:8492#0--HWUSI-EAS1656_0009;gene_id=tV(AAC)L;tss_id=TSS1724;nbOverlaps=132;ID=tV(AAC)L;Name=tV(AAC)L
XII	S-MART	transcript	1018141	1018908	.	-	.	seqedit=false;p_id=P2342;gene_id=YLR441C;tss_id=TSS5312;nbOverlaps=0;ID=YLR441C;Name=RPS1A
XII	S-MART	transcript	1019315	1022251	.	-	.	seqedit=false;p_id=P3389;gene_id=YLR442C;tss_id=TSS5335;nbOverlaps=0;ID=YLR442C;Name=SIR3
XV	S-MART	transcript	344335	345798	.	+	.	seqedit=false;p_id=P519;gene_id=YOR009W;tss_id=TSS3334;nbOverlaps=0;ID=YOR009W;Name=TIR4
XII	S-MART	transcript	1022625	1023971	.	+	.	seqedit=false;p_id=P4888;gene_id=YLR443W;tss_id=TSS2041;nbOverlaps=0;ID=YLR443W;Name=ECM7
XII	S-MART	transcript	1026856	1027893	.	-	.	seqedit=false;p_id=P659;gene_id=YLR447C;tss_id=TSS3452;nbOverlaps=0;ID=YLR447C;Name=VMA6
XII	S-MART	transcript	1023686	1023988	.	-	.	seqedit=false;p_id=P2179;gene_id=YLR444C;tss_id=TSS3520;nbOverlaps=0;ID=YLR444C;Name=YLR444C
XVI	S-MART	transcript	943032	943896	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:83:4601:12973#0--HWUSI-EAS1656_000;p_id=P3577;gene_id=YPR202W;tss_id=TSS6873;nbOverlaps=80;ID=YPR202W;Name=YPR202W
XVI	S-MART	exon	943032	943050	.	+	.	ID=YPR202W-exon1;Name=YPR202W-exon1;Parent=YPR202W
XVI	S-MART	exon	943199	943896	.	+	.	ID=YPR202W-exon2;Name=YPR202W-exon2;Parent=YPR202W
XII	S-MART	transcript	1024189	1024837	.	+	.	seqedit=false;p_id=P4349;gene_id=YLR445W;tss_id=TSS6797;nbOverlaps=0;ID=YLR445W;Name=YLR445W
XII	S-MART	exon	1024189	1024572	.	+	.	ID=YLR445W-exon1;Name=YLR445W-exon1;Parent=YLR445W
XII	S-MART	exon	1024655	1024837	.	+	.	ID=YLR445W-exon2;Name=YLR445W-exon2;Parent=YLR445W
XIII	S-MART	transcript	420588	420661	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:94:15978:8492#0--HWUSI-EAS1656_0009;gene_id=tV(AAC)M2;tss_id=TSS3972;nbOverlaps=132;ID=tV(AAC)M2;Name=tV(AAC)M2
XV	S-MART	transcript	346195	346950	.	-	.	seqedit=false;p_id=P571;gene_id=YOR010C;tss_id=TSS6503;nbOverlaps=0;ID=YOR010C;Name=TIR2
XII	S-MART	transcript	1025214	1026515	.	+	.	seqedit=false;p_id=P4920;gene_id=YLR446W;tss_id=TSS4498;nbOverlaps=0;ID=YLR446W;Name=YLR446W
XII	S-MART	transcript	1028854	1029768	.	+	.	seqedit=false;p_id=P5689;gene_id=YLR448W;tss_id=TSS3256;nbOverlaps=0;ID=YLR448W;Name=RPL6B
XII	S-MART	exon	1028854	1028868	.	+	.	ID=YLR448W-exon1;Name=RPL6B-exon1;Parent=YLR448W
XII	S-MART	exon	1029253	1029768	.	+	.	ID=YLR448W-exon2;Name=RPL6B-exon2;Parent=YLR448W
XIII	S-MART	transcript	586636	586709	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:94:15978:8492#0--HWUSI-EAS1656_0009;gene_id=tV(AAC)M3;tss_id=TSS2069;nbOverlaps=133;ID=tV(AAC)M3;Name=tV(AAC)M3
XII	S-MART	transcript	1030834	1032012	.	+	.	seqedit=false;p_id=P2529;gene_id=YLR449W;tss_id=TSS1459;nbOverlaps=0;ID=YLR449W;Name=FPR4
XII	S-MART	transcript	1032627	1035764	.	+	.	seqedit=false;p_id=P2673;gene_id=YLR450W;tss_id=TSS4341;nbOverlaps=0;ID=YLR450W;Name=HMG2
XV	S-MART	transcript	349679	353863	.	+	.	seqedit=false;p_id=P3160;gene_id=YOR011W;tss_id=TSS3368;nbOverlaps=0;ID=YOR011W;Name=AUS1
XII	S-MART	transcript	1036093	1038753	.	+	.	seqedit=false;p_id=P5528;gene_id=YLR451W;tss_id=TSS5583;nbOverlaps=0;ID=YLR451W;Name=LEU3
XV	S-MART	transcript	573175	574830	.	+	.	seqedit=false;p_id=P1864;gene_id=YOR132W;tss_id=TSS2592;nbOverlaps=0;ID=YOR132W;Name=VPS17
XII	S-MART	transcript	1039270	1041366	.	-	.	seqedit=false;p_id=P634;gene_id=YLR452C;tss_id=TSS1804;nbOverlaps=0;ID=YLR452C;Name=SST2
XII	S-MART	transcript	1041799	1042986	.	-	.	seqedit=false;p_id=P3883;gene_id=YLR453C;tss_id=TSS2200;nbOverlaps=0;ID=YLR453C;Name=RIF2
XII	S-MART	transcript	1043998	1051884	.	+	.	seqedit=false;p_id=P6389;gene_id=YLR454W;tss_id=TSS310;nbOverlaps=0;ID=YLR454W;Name=FMP27
VII	S-MART	transcript	287350	287455	.	-	.	seqedit=false;gene_id=tW(CCA)G1;tss_id=TSS1692;nbOverlaps=0;ID=tW(CCA)G1;Name=tW(CCA)G1
VII	S-MART	exon	287350	287385	.	-	.	ID=tW(CCA)G1-exon1;Name=tW(CCA)G1-exon1;Parent=tW(CCA)G1
VII	S-MART	exon	287420	287455	.	-	.	ID=tW(CCA)G1-exon2;Name=tW(CCA)G1-exon2;Parent=tW(CCA)G1
XII	S-MART	transcript	1055812	1056771	.	-	.	seqedit=false;p_id=P3780;gene_id=YLR457C;tss_id=TSS4406;nbOverlaps=0;ID=YLR457C;Name=NBP1
XII	S-MART	transcript	1053629	1054543	.	+	.	seqedit=false;p_id=P4182;gene_id=YLR455W;tss_id=TSS5880;nbOverlaps=0;ID=YLR455W;Name=YLR455W
XV	S-MART	transcript	355652	355858	.	+	.	seqedit=false;p_id=P86;gene_id=YOR011W-A;tss_id=TSS4874;nbOverlaps=0;ID=YOR011W-A;Name=YOR011W-A
XII	S-MART	transcript	1055070	1055684	.	+	.	seqedit=false;p_id=P4705;gene_id=YLR456W;tss_id=TSS800;nbOverlaps=0;ID=YLR456W;Name=YLR456W
XII	S-MART	transcript	1057334	1058518	.	+	.	seqedit=false;p_id=P5841;gene_id=YLR459W;tss_id=TSS5024;nbOverlaps=0;ID=YLR459W;Name=GAB1
XII	S-MART	transcript	1056455	1056835	.	+	.	seqedit=false;p_id=P5013;gene_id=YLR458W;tss_id=TSS5630;nbOverlaps=0;ID=YLR458W;Name=YLR458W
XII	S-MART	transcript	1062919	1063281	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:14589:7302#0--HWUSI-EAS1656_0009_FC:3:9:6232:2282#0;p_id=P4398;gene_id=YLR461W;tss_id=TSS736;nbOverlaps=2;ID=YLR461W;Name=PAU4
XV	S-MART	transcript	663812	663885	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)O;tss_id=TSS155;nbOverlaps=121;ID=tV(AAC)O;Name=tV(AAC)O
XII	S-MART	transcript	1059757	1060887	.	-	.	seqedit=false;p_id=P1524;gene_id=YLR460C;tss_id=TSS728;nbOverlaps=0;ID=YLR460C;Name=YLR460C
XII	S-MART	transcript	1067045	1067353	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0009_FC:3:61:9128:14693#0--HWUSI-EAS1656_00;p_id=P4583;gene_id=YLR465C;tss_id=TSS731;nbOverlaps=17;ID=YLR465C;Name=BSC3
XV	S-MART	transcript	356751	357221	.	+	.	seqedit=false;p_id=P826;gene_id=YOR013W;tss_id=TSS3253;nbOverlaps=0;ID=YOR013W;Name=IRC11
XII	S-MART	transcript	1065956	1066564	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:96:1482:14832#0--HWUSI-EAS1656_000;p_id=P6080;gene_id=YLR462W;tss_id=TSS6747;nbOverlaps=61;ID=YLR462W;Name=YLR462W
XII	S-MART	transcript	1066265	1066816	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:17:8037:10273#0--HWUSI-EAS1656_000;p_id=P3880;gene_id=YLR463C;tss_id=TSS868;nbOverlaps=61;ID=YLR463C;Name=YLR463C
XII	S-MART	transcript	1066572	1067501	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:8037:10273#0--HWUSI-EAS1656_0009_FC:3:96:8143:11229#0--HWUSI-EAS1656_0009;p_id=P1326;gene_id=YLR464W;tss_id=TSS1354;nbOverlaps=58;ID=YLR464W;Name=YLR464W
XII	S-MART	exon	1066572	1067084	.	+	.	ID=YLR464W-exon1;Name=YLR464W-exon1;Parent=YLR464W
XII	S-MART	exon	1067364	1067501	.	+	.	ID=YLR464W-exon2;Name=YLR464W-exon2;Parent=YLR464W
IV	S-MART	transcript	1075472	1075544	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:11702:7086#0--HWUSI-EAS1656_0009_FC:3:22:4518:6783#0--HWUSI-EAS1656_0009_;gene_id=tV(CAC)D;tss_id=TSS5005;nbOverlaps=102;ID=tV(CAC)D;Name=tV(CAC)D
XII	S-MART	transcript	1070387	1070869	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_FC:3:12:4982:1665#0--HWUSI-EAS1656_0009_F;p_id=P464;gene_id=YLR466C-A;tss_id=TSS6651;nbOverlaps=70;ID=YLR466C-A;Name=YLR466C-A
XV	S-MART	transcript	356543	356956	.	+	.	seqedit=false;p_id=P1375;gene_id=YOR012W;tss_id=TSS4970;nbOverlaps=0;ID=YOR012W;Name=YOR012W
XII	S-MART	transcript	1071594	1071710	.	-	.	seqedit=false;p_id=P1561;gene_id=YLR466C-B;tss_id=TSS2874;nbOverlaps=0;ID=YLR466C-B;Name=YLR466C-B
XII	S-MART	transcript	1067087	1071235	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_0;p_id=P6240;gene_id=YLR466W;tss_id=TSS536;nbOverlaps=416;ID=YLR466W;Name=YRF1-4
XII	S-MART	transcript	1077050	1077532	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_FC:3:12:4982:1665#0--HWUSI-EAS1656_0009_F;p_id=P3954;gene_id=YLR467C-A;tss_id=TSS5885;nbOverlaps=70;ID=YLR467C-A;Name=YLR467C-A
XII	S-MART	transcript	1072508	1077898	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P1546;gene_id=YLR467W;tss_id=TSS5423;nbOverlaps=531;ID=YLR467W;Name=YRF1-5
VIII	S-MART	transcript	475706	475778	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:11702:7086#0--HWUSI-EAS1656_0009_FC:3:22:4518:6783#0--HWUSI-EAS1656_0009_;gene_id=tV(CAC)H;tss_id=TSS2984;nbOverlaps=114;ID=tV(CAC)H;Name=tV(CAC)H
XIII	S-MART	transcript	267174	267800	.	+	.	seqedit=false;p_id=P1201;gene_id=YML001W;tss_id=TSS5463;nbOverlaps=0;ID=YML001W;Name=YPT7
XIII	S-MART	transcript	261705	262685	.	-	.	seqedit=false;p_id=P2327;gene_id=YML004C;tss_id=TSS5146;nbOverlaps=0;ID=YML004C;Name=GLO1
XV	S-MART	transcript	357674	359947	.	+	.	seqedit=false;p_id=P5249;gene_id=YOR014W;tss_id=TSS6934;nbOverlaps=0;ID=YOR014W;Name=RTS1
XIII	S-MART	transcript	264541	266754	.	+	.	seqedit=false;p_id=P6181;gene_id=YML002W;tss_id=TSS3357;nbOverlaps=0;ID=YML002W;Name=YML002W
XIII	S-MART	transcript	263483	264355	.	+	.	seqedit=false;p_id=P5772;gene_id=YML003W;tss_id=TSS5455;nbOverlaps=0;ID=YML003W;Name=YML003W
XIII	S-MART	transcript	260221	261609	.	+	.	seqedit=false;p_id=P607;gene_id=YML005W;tss_id=TSS3541;nbOverlaps=0;ID=YML005W;Name=TRM12
XIII	S-MART	transcript	256092	258416	.	-	.	seqedit=false;p_id=P2692;gene_id=YML006C;tss_id=TSS2109;nbOverlaps=0;ID=YML006C;Name=GIS4
II	S-MART	transcript	326792	326865	.	-	.	seqedit=false;gene_id=tV(UAC)B;tss_id=TSS5566;nbOverlaps=0;ID=tV(UAC)B;Name=tV(UAC)B
II	S-MART	transcript	716882	717994	.	-	.	seqedit=false;p_id=P1029;gene_id=YBR249C;tss_id=TSS5557;nbOverlaps=0;ID=YBR249C;Name=ARO4
II	S-MART	transcript	719033	720604	.	+	.	seqedit=false;p_id=P1648;gene_id=YBR250W;tss_id=TSS5253;nbOverlaps=0;ID=YBR250W;Name=SPO23
XV	S-MART	transcript	572182	572838	.	-	.	seqedit=false;p_id=P1418;gene_id=YOR131C;tss_id=TSS6753;nbOverlaps=0;ID=YOR131C;Name=YOR131C
II	S-MART	transcript	721390	722313	.	+	.	seqedit=false;p_id=P3998;gene_id=YBR251W;tss_id=TSS3437;nbOverlaps=0;ID=YBR251W;Name=MRPS5
II	S-MART	transcript	722611	723054	.	+	.	seqedit=false;p_id=P3838;gene_id=YBR252W;tss_id=TSS80;nbOverlaps=0;ID=YBR252W;Name=DUT1
X	S-MART	transcript	283802	285271	.	-	.	seqedit=false;p_id=P3116;gene_id=YJL081C;tss_id=TSS489;nbOverlaps=0;ID=YJL081C;Name=ARP4
II	S-MART	transcript	723270	723635	.	+	.	seqedit=false;p_id=P1300;gene_id=YBR253W;tss_id=TSS282;nbOverlaps=0;ID=YBR253W;Name=SRB6
IV	S-MART	transcript	488797	488870	.	-	.	seqedit=false;gene_id=tV(UAC)D;tss_id=TSS3411;nbOverlaps=0;ID=tV(UAC)D;Name=tV(UAC)D
IV	S-MART	transcript	1342493	1344241	.	+	.	seqedit=false;p_id=P2517;gene_id=YDR440W;tss_id=TSS1041;nbOverlaps=0;ID=YDR440W;Name=DOT1
IV	S-MART	transcript	1344517	1345062	.	-	.	seqedit=false;p_id=P326;gene_id=YDR441C;tss_id=TSS5190;nbOverlaps=0;ID=YDR441C;Name=APT2
IV	S-MART	transcript	1345676	1349938	.	-	.	seqedit=false;p_id=P1294;gene_id=YDR443C;tss_id=TSS4025;nbOverlaps=0;ID=YDR443C;Name=SSN2
IV	S-MART	transcript	1345647	1346039	.	+	.	seqedit=false;p_id=P3456;gene_id=YDR442W;tss_id=TSS2470;nbOverlaps=0;ID=YDR442W;Name=YDR442W
II	S-MART	transcript	724456	726540	.	+	.	seqedit=false;p_id=P2148;gene_id=YBR255W;tss_id=TSS1810;nbOverlaps=0;ID=YBR255W;Name=MTC4
IV	S-MART	transcript	1350290	1352353	.	+	.	seqedit=false;p_id=P3819;gene_id=YDR444W;tss_id=TSS3418;nbOverlaps=0;ID=YDR444W;Name=YDR444W
Mito	S-MART	transcript	78533	78608	.	+	.	seqedit=false;gene_id=tV(UAC)Q;tss_id=TSS4351;nbOverlaps=0;ID=tV(UAC)Q;Name=tV(UAC)Q
II	S-MART	transcript	728885	729724	.	+	.	seqedit=false;p_id=P1521;gene_id=YBR257W;tss_id=TSS4491;nbOverlaps=0;ID=YBR257W;Name=POP4
II	S-MART	transcript	729734	730162	.	-	.	seqedit=false;p_id=P3549;gene_id=YBR258C;tss_id=TSS246;nbOverlaps=0;ID=YBR258C;Name=SHG1
II	S-MART	transcript	732639	734639	.	-	.	seqedit=false;p_id=P4003;gene_id=YBR260C;tss_id=TSS6377;nbOverlaps=0;ID=YBR260C;Name=RGD1
II	S-MART	transcript	730387	732453	.	+	.	seqedit=false;p_id=P310;gene_id=YBR259W;tss_id=TSS4040;nbOverlaps=0;ID=YBR259W;Name=YBR259W
II	S-MART	transcript	734832	735530	.	-	.	seqedit=false;p_id=P3396;gene_id=YBR261C;tss_id=TSS3517;nbOverlaps=0;ID=YBR261C;Name=TAE1
II	S-MART	transcript	735720	736040	.	-	.	seqedit=false;p_id=P4213;gene_id=YBR262C;tss_id=TSS3204;nbOverlaps=0;ID=YBR262C;Name=AIM5
II	S-MART	transcript	736264	737736	.	+	.	seqedit=false;p_id=P234;gene_id=YBR263W;tss_id=TSS4978;nbOverlaps=0;ID=YBR263W;Name=SHM1
II	S-MART	transcript	737770	738369	.	-	.	seqedit=false;p_id=P618;gene_id=YBR264C;tss_id=TSS1978;nbOverlaps=0;ID=YBR264C;Name=YPT10
II	S-MART	transcript	738582	739544	.	+	.	seqedit=false;p_id=P3279;gene_id=YBR265W;tss_id=TSS6767;nbOverlaps=0;ID=YBR265W;Name=TSC10
II	S-MART	transcript	739936	740388	.	-	.	seqedit=false;p_id=P5983;gene_id=YBR266C;tss_id=TSS5752;nbOverlaps=0;ID=YBR266C;Name=SLM6
II	S-MART	transcript	739841	741022	.	+	.	seqedit=false;p_id=P5489;gene_id=YBR267W;tss_id=TSS4298;nbOverlaps=0;ID=YBR267W;Name=REI1
II	S-MART	transcript	741299	741616	.	+	.	seqedit=false;p_id=P2727;gene_id=YBR268W;tss_id=TSS6855;nbOverlaps=0;ID=YBR268W;Name=MRPL37
IV	S-MART	transcript	1366264	1366827	.	-	.	seqedit=false;p_id=P3978;gene_id=YDR454C;tss_id=TSS1099;nbOverlaps=0;ID=YDR454C;Name=GUK1
II	S-MART	transcript	742761	744398	.	-	.	seqedit=false;p_id=P3002;gene_id=YBR270C;tss_id=TSS2404;nbOverlaps=0;ID=YBR270C;Name=BIT2
IV	S-MART	transcript	1367373	1367681	.	-	.	seqedit=false;p_id=P5627;gene_id=YDR455C;tss_id=TSS4070;nbOverlaps=0;ID=YDR455C;Name=YDR455C
II	S-MART	transcript	744852	746111	.	+	.	seqedit=false;p_id=P670;gene_id=YBR271W;tss_id=TSS4687;nbOverlaps=0;ID=YBR271W;Name=YBR271W
IV	S-MART	transcript	1380055	1382046	.	-	.	seqedit=false;p_id=P1653;gene_id=YDR458C;tss_id=TSS3394;nbOverlaps=0;ID=YDR458C;Name=HEH2
II	S-MART	transcript	749594	751177	.	+	.	seqedit=false;p_id=P1544;gene_id=YBR274W;tss_id=TSS6793;nbOverlaps=0;ID=YBR274W;Name=CHK1
VII	S-MART	transcript	878710	878815	.	-	.	seqedit=false;gene_id=tW(CCA)G2;tss_id=TSS4424;nbOverlaps=0;ID=tW(CCA)G2;Name=tW(CCA)G2
VII	S-MART	exon	878710	878745	.	-	.	ID=tW(CCA)G2-exon1;Name=tW(CCA)G2-exon1;Parent=tW(CCA)G2
VII	S-MART	exon	878780	878815	.	-	.	ID=tW(CCA)G2-exon2;Name=tW(CCA)G2-exon2;Parent=tW(CCA)G2
II	S-MART	transcript	751356	757106	.	-	.	seqedit=false;p_id=P743;gene_id=YBR275C;tss_id=TSS1163;nbOverlaps=0;ID=YBR275C;Name=RIF1
II	S-MART	transcript	757620	760043	.	-	.	seqedit=false;p_id=P2199;gene_id=YBR276C;tss_id=TSS6019;nbOverlaps=0;ID=YBR276C;Name=PPS1
II	S-MART	transcript	760294	760899	.	+	.	seqedit=false;p_id=P484;gene_id=YBR278W;tss_id=TSS4088;nbOverlaps=0;ID=YBR278W;Name=DPB3
XV	S-MART	transcript	575098	577626	.	+	.	seqedit=false;p_id=P5027;gene_id=YOR133W;tss_id=TSS6924;nbOverlaps=0;ID=YOR133W;Name=EFT1
II	S-MART	transcript	760215	760616	.	-	.	seqedit=false;p_id=P4646;gene_id=YBR277C;tss_id=TSS2393;nbOverlaps=0;ID=YBR277C;Name=YBR277C
II	S-MART	transcript	761257	762594	.	+	.	seqedit=false;p_id=P6238;gene_id=YBR279W;tss_id=TSS6404;nbOverlaps=0;ID=YBR279W;Name=PAF1
II	S-MART	transcript	762784	764697	.	-	.	seqedit=false;p_id=P2044;gene_id=YBR280C;tss_id=TSS6535;nbOverlaps=0;ID=YBR280C;Name=SAF1
II	S-MART	transcript	764970	767606	.	-	.	seqedit=false;p_id=P6081;gene_id=YBR281C;tss_id=TSS5151;nbOverlaps=0;ID=YBR281C;Name=DUG2
II	S-MART	transcript	768240	768680	.	+	.	seqedit=false;p_id=P1606;gene_id=YBR282W;tss_id=TSS4771;nbOverlaps=0;ID=YBR282W;Name=MRPL27
II	S-MART	transcript	768943	770415	.	-	.	seqedit=false;p_id=P2788;gene_id=YBR283C;tss_id=TSS1245;nbOverlaps=0;ID=YBR283C;Name=SSH1
IV	S-MART	transcript	1398026	1398700	.	-	.	seqedit=false;p_id=P2976;gene_id=YDR468C;tss_id=TSS5340;nbOverlaps=0;ID=YDR468C;Name=TLG1
II	S-MART	transcript	771239	773632	.	+	.	seqedit=false;p_id=P6672;gene_id=YBR284W;tss_id=TSS702;nbOverlaps=0;ID=YBR284W;Name=YBR284W
II	S-MART	transcript	773922	774356	.	+	.	seqedit=false;p_id=P4334;gene_id=YBR285W;tss_id=TSS2021;nbOverlaps=0;ID=YBR285W;Name=YBR285W
II	S-MART	transcript	778012	779463	.	-	.	seqedit=false;p_id=P3653;gene_id=YBR288C;tss_id=TSS2747;nbOverlaps=0;ID=YBR288C;Name=APM3
II	S-MART	transcript	776571	777854	.	+	.	seqedit=false;p_id=P1458;gene_id=YBR287W;tss_id=TSS6;nbOverlaps=0;ID=YBR287W;Name=YBR287W
II	S-MART	transcript	779667	782384	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:3627:16414#0;p_id=P1961;gene_id=YBR289W;tss_id=TSS3934;nbOverlaps=1;ID=YBR289W;Name=SNF5
II	S-MART	transcript	782591	783556	.	+	.	seqedit=false;p_id=P19;gene_id=YBR290W;tss_id=TSS2814;nbOverlaps=0;ID=YBR290W;Name=BSD2
II	S-MART	transcript	783673	784572	.	-	.	seqedit=false;p_id=P3527;gene_id=YBR291C;tss_id=TSS1087;nbOverlaps=0;ID=YBR291C;Name=CTP1
II	S-MART	transcript	787006	788430	.	+	.	seqedit=false;p_id=P2418;gene_id=YBR293W;tss_id=TSS5183;nbOverlaps=0;ID=YBR293W;Name=VBA2
IV	S-MART	transcript	946312	946400	.	+	.	seqedit=false;gene_id=tY(GUA)D;tss_id=TSS653;nbOverlaps=0;ID=tY(GUA)D;Name=SUP2
IV	S-MART	exon	946312	946350	.	+	.	ID=tY(GUA)D-exon1;Name=SUP2-exon1;Parent=tY(GUA)D
IV	S-MART	exon	946365	946400	.	+	.	ID=tY(GUA)D-exon2;Name=SUP2-exon2;Parent=tY(GUA)D
II	S-MART	transcript	784702	785073	.	-	.	seqedit=false;p_id=P2691;gene_id=YBR292C;tss_id=TSS2243;nbOverlaps=0;ID=YBR292C;Name=YBR292C
II	S-MART	transcript	789235	791814	.	+	.	seqedit=false;p_id=P2466;gene_id=YBR294W;tss_id=TSS307;nbOverlaps=0;ID=YBR294W;Name=SUL1
II	S-MART	transcript	792849	796499	.	+	.	seqedit=false;p_id=P1821;gene_id=YBR295W;tss_id=TSS6605;nbOverlaps=0;ID=YBR295W;Name=PCA1
IV	S-MART	transcript	1414575	1415171	.	+	.	seqedit=false;p_id=P3987;gene_id=YDR478W;tss_id=TSS5968;nbOverlaps=0;ID=YDR478W;Name=SNM1
IV	S-MART	transcript	1415210	1416874	.	-	.	seqedit=false;p_id=P123;gene_id=YDR479C;tss_id=TSS4480;nbOverlaps=0;ID=YDR479C;Name=PEX29
IV	S-MART	transcript	1417399	1418370	.	+	.	seqedit=false;p_id=P3788;gene_id=YDR480W;tss_id=TSS6769;nbOverlaps=0;ID=YDR480W;Name=DIG2
X	S-MART	transcript	415931	416036	.	-	.	seqedit=false;gene_id=tW(CCA)J;tss_id=TSS1347;nbOverlaps=0;ID=tW(CCA)J;Name=tW(CCA)J
X	S-MART	exon	415931	415966	.	-	.	ID=tW(CCA)J-exon1;Name=tW(CCA)J-exon1;Parent=tW(CCA)J
X	S-MART	exon	416001	416036	.	-	.	ID=tW(CCA)J-exon2;Name=tW(CCA)J-exon2;Parent=tW(CCA)J
IV	S-MART	transcript	1418550	1420250	.	-	.	seqedit=false;p_id=P1661;gene_id=YDR481C;tss_id=TSS5006;nbOverlaps=0;ID=YDR481C;Name=PHO8
IV	S-MART	transcript	1420431	1420838	.	-	.	seqedit=false;p_id=P6454;gene_id=YDR482C;tss_id=TSS6006;nbOverlaps=0;ID=YDR482C;Name=CWC21
IV	S-MART	transcript	1421157	1422485	.	+	.	seqedit=false;p_id=P937;gene_id=YDR483W;tss_id=TSS684;nbOverlaps=0;ID=YDR483W;Name=KRE2
IV	S-MART	transcript	1422763	1424688	.	+	.	seqedit=false;p_id=P6384;gene_id=YDR484W;tss_id=TSS2906;nbOverlaps=0;ID=YDR484W;Name=VPS52
IV	S-MART	transcript	1424820	1427207	.	-	.	seqedit=false;p_id=P5948;gene_id=YDR485C;tss_id=TSS1737;nbOverlaps=0;ID=YDR485C;Name=VPS72
IV	S-MART	transcript	1427431	1428120	.	-	.	seqedit=false;p_id=P1482;gene_id=YDR486C;tss_id=TSS1249;nbOverlaps=0;ID=YDR486C;Name=VPS60
XVI	S-MART	transcript	199095	199376	.	+	.	seqedit=false;p_id=P5594;gene_id=YPL183W-A;tss_id=TSS2376;nbOverlaps=0;ID=YPL183W-A;Name=RTC6
IV	S-MART	transcript	1428354	1428980	.	-	.	seqedit=false;p_id=P4340;gene_id=YDR487C;tss_id=TSS529;nbOverlaps=0;ID=YDR487C;Name=RIB3
IV	S-MART	transcript	1429188	1430789	.	-	.	seqedit=false;p_id=P3285;gene_id=YDR488C;tss_id=TSS3350;nbOverlaps=0;ID=YDR488C;Name=PAC11
IV	S-MART	transcript	1431012	1431896	.	+	.	seqedit=false;p_id=P406;gene_id=YDR489W;tss_id=TSS3472;nbOverlaps=0;ID=YDR489W;Name=SLD5
XV	S-MART	transcript	578564	579793	.	+	.	seqedit=false;p_id=P6106;gene_id=YOR134W;tss_id=TSS4240;nbOverlaps=0;ID=YOR134W;Name=BAG7
IV	S-MART	transcript	1431968	1434268	.	-	.	seqedit=false;p_id=P4254;gene_id=YDR490C;tss_id=TSS1055;nbOverlaps=0;ID=YDR490C;Name=PKH1
XIII	S-MART	transcript	550206	551207	.	-	.	seqedit=false;p_id=P1031;gene_id=YMR142C;tss_id=TSS3698;nbOverlaps=0;ID=YMR142C;Name=RPL13B
XIII	S-MART	exon	550206	550801	.	-	.	ID=YMR142C-exon1;Name=RPL13B-exon1;Parent=YMR142C
XIII	S-MART	exon	551204	551207	.	-	.	ID=YMR142C-exon2;Name=RPL13B-exon2;Parent=YMR142C
III	S-MART	transcript	199546	200178	.	-	.	seqedit=false;p_id=P3765;gene_id=YCR039C;tss_id=TSS1202;nbOverlaps=0;ID=YCR039C;Name=MATALPHA2
III	S-MART	transcript	200442	200969	.	+	.	seqedit=false;p_id=P4314;gene_id=YCR040W;tss_id=TSS3140;nbOverlaps=0;ID=YCR040W;Name=MATALPHA1
III	S-MART	transcript	201174	205397	.	-	.	seqedit=false;p_id=P4593;gene_id=YCR042C;tss_id=TSS2574;nbOverlaps=0;ID=YCR042C;Name=TAF2
III	S-MART	transcript	200911	201243	.	+	.	seqedit=false;p_id=P4655;gene_id=YCR041W;tss_id=TSS6105;nbOverlaps=0;ID=YCR041W;Name=YCR041W
III	S-MART	transcript	206877	207950	.	-	.	seqedit=false;p_id=P3595;gene_id=YCR044C;tss_id=TSS726;nbOverlaps=0;ID=YCR044C;Name=PER1
III	S-MART	transcript	206261	206644	.	-	.	seqedit=false;p_id=P5767;gene_id=YCR043C;tss_id=TSS1256;nbOverlaps=0;ID=YCR043C;Name=YCR043C
III	S-MART	transcript	208135	209610	.	-	.	seqedit=false;p_id=P2265;gene_id=YCR045C;tss_id=TSS5633;nbOverlaps=0;ID=YCR045C;Name=RRT12
III	S-MART	transcript	208751	209101	.	+	.	seqedit=false;p_id=P1168;gene_id=YCR045W-A;tss_id=TSS865;nbOverlaps=0;ID=YCR045W-A;Name=YCR045W-A
III	S-MART	transcript	209914	210423	.	-	.	seqedit=false;p_id=P2;gene_id=YCR046C;tss_id=TSS3096;nbOverlaps=0;ID=YCR046C;Name=IMG1
III	S-MART	transcript	210718	211545	.	-	.	seqedit=false;p_id=P2654;gene_id=YCR047C;tss_id=TSS5744;nbOverlaps=0;ID=YCR047C;Name=BUD23
III	S-MART	transcript	211301	211507	.	+	.	seqedit=false;p_id=P1517;gene_id=YCR047W-A;tss_id=TSS3877;nbOverlaps=0;ID=YCR047W-A;Name=YCR047W-A
III	S-MART	transcript	211929	213761	.	+	.	seqedit=false;p_id=P4147;gene_id=YCR048W;tss_id=TSS2406;nbOverlaps=0;ID=YCR048W;Name=ARE1
III	S-MART	transcript	214994	216445	.	+	.	seqedit=false;p_id=P1173;gene_id=YCR052W;tss_id=TSS791;nbOverlaps=0;ID=YCR052W;Name=RSC6
III	S-MART	transcript	211871	212317	.	-	.	seqedit=false;p_id=P6539;gene_id=YCR049C;tss_id=TSS5926;nbOverlaps=0;ID=YCR049C;Name=YCR049C
III	S-MART	transcript	213464	213772	.	-	.	seqedit=false;p_id=P1310;gene_id=YCR050C;tss_id=TSS1942;nbOverlaps=0;ID=YCR050C;Name=YCR050C
III	S-MART	transcript	214071	214739	.	+	.	seqedit=false;p_id=P5608;gene_id=YCR051W;tss_id=TSS1964;nbOverlaps=0;ID=YCR051W;Name=YCR051W
III	S-MART	transcript	216697	218241	.	+	.	seqedit=false;p_id=P1647;gene_id=YCR053W;tss_id=TSS3433;nbOverlaps=0;ID=YCR053W;Name=THR4
III	S-MART	transcript	218376	220067	.	-	.	seqedit=false;p_id=P4024;gene_id=YCR054C;tss_id=TSS1923;nbOverlaps=0;ID=YCR054C;Name=CTR86
III	S-MART	transcript	220457	223228	.	-	.	seqedit=false;p_id=P1815;gene_id=YCR057C;tss_id=TSS2193;nbOverlaps=0;ID=YCR057C;Name=PWP2
III	S-MART	transcript	223454	224230	.	-	.	seqedit=false;p_id=P5718;gene_id=YCR059C;tss_id=TSS2039;nbOverlaps=0;ID=YCR059C;Name=YIH1
III	S-MART	transcript	224399	224734	.	+	.	seqedit=false;p_id=P3882;gene_id=YCR060W;tss_id=TSS928;nbOverlaps=0;ID=YCR060W;Name=TAH1
III	S-MART	transcript	228318	228791	.	+	.	seqedit=false;p_id=P3413;gene_id=YCR063W;tss_id=TSS16;nbOverlaps=0;ID=YCR063W;Name=BUD31
III	S-MART	transcript	225563	227458	.	+	.	seqedit=false;p_id=P5255;gene_id=YCR061W;tss_id=TSS4549;nbOverlaps=0;ID=YCR061W;Name=YCR061W
X	S-MART	transcript	242082	245258	.	+	.	seqedit=false;p_id=P4285;gene_id=YJL098W;tss_id=TSS1869;nbOverlaps=0;ID=YJL098W;Name=SAP185
III	S-MART	transcript	229310	231004	.	+	.	seqedit=false;p_id=P5980;gene_id=YCR065W;tss_id=TSS3639;nbOverlaps=0;ID=YCR065W;Name=HCM1
III	S-MART	transcript	228095	228505	.	-	.	seqedit=false;p_id=P4743;gene_id=YCR064C;tss_id=TSS3537;nbOverlaps=0;ID=YCR064C;Name=YCR064C
XIII	S-MART	transcript	379303	379408	.	-	.	seqedit=false;gene_id=tW(CCA)M;tss_id=TSS6854;nbOverlaps=0;ID=tW(CCA)M;Name=tW(CCA)M
XIII	S-MART	exon	379303	379338	.	-	.	ID=tW(CCA)M-exon1;Name=tW(CCA)M-exon1;Parent=tW(CCA)M
XIII	S-MART	exon	379373	379408	.	-	.	ID=tW(CCA)M-exon2;Name=tW(CCA)M-exon2;Parent=tW(CCA)M
III	S-MART	transcript	231500	232963	.	+	.	seqedit=false;p_id=P2336;gene_id=YCR066W;tss_id=TSS1661;nbOverlaps=0;ID=YCR066W;Name=RAD18
III	S-MART	transcript	233125	236322	.	-	.	seqedit=false;p_id=P4428;gene_id=YCR067C;tss_id=TSS5245;nbOverlaps=0;ID=YCR067C;Name=SED4
III	S-MART	transcript	237214	238776	.	+	.	seqedit=false;p_id=P4860;gene_id=YCR068W;tss_id=TSS5008;nbOverlaps=0;ID=YCR068W;Name=ATG15
XV	S-MART	transcript	580159	580500	.	-	.	seqedit=false;p_id=P6375;gene_id=YOR135C;tss_id=TSS2845;nbOverlaps=0;ID=YOR135C;Name=IRC14
III	S-MART	transcript	239055	240011	.	+	.	seqedit=false;p_id=P2815;gene_id=YCR069W;tss_id=TSS3831;nbOverlaps=0;ID=YCR069W;Name=CPR4
III	S-MART	transcript	240103	240543	.	-	.	seqedit=false;p_id=P1976;gene_id=YCR071C;tss_id=TSS1830;nbOverlaps=0;ID=YCR071C;Name=IMG2
III	S-MART	transcript	240805	242352	.	-	.	seqedit=false;p_id=P2747;gene_id=YCR072C;tss_id=TSS3938;nbOverlaps=0;ID=YCR072C;Name=RSA4
III	S-MART	transcript	242588	246583	.	-	.	seqedit=false;p_id=P2862;gene_id=YCR073C;tss_id=TSS707;nbOverlaps=0;ID=YCR073C;Name=SSK22
III	S-MART	transcript	246963	247910	.	+	.	seqedit=false;p_id=P997;gene_id=YCR073W-A;tss_id=TSS2886;nbOverlaps=0;ID=YCR073W-A;Name=SOL2
III	S-MART	transcript	248033	248815	.	-	.	seqedit=false;p_id=P3937;gene_id=YCR075C;tss_id=TSS5015;nbOverlaps=0;ID=YCR075C;Name=ERS1
III	S-MART	transcript	248975	249202	.	+	.	seqedit=false;p_id=P6564;gene_id=YCR075W-A;tss_id=TSS6171;nbOverlaps=0;ID=YCR075W-A;Name=YCR075W-A
III	S-MART	transcript	250238	252628	.	-	.	seqedit=false;p_id=P2866;gene_id=YCR077C;tss_id=TSS355;nbOverlaps=0;ID=YCR077C;Name=PAT1
III	S-MART	transcript	249293	250045	.	-	.	seqedit=false;p_id=P4205;gene_id=YCR076C;tss_id=TSS555;nbOverlaps=0;ID=YCR076C;Name=YCR076C
III	S-MART	transcript	252845	254173	.	+	.	seqedit=false;p_id=P5369;gene_id=YCR079W;tss_id=TSS2150;nbOverlaps=0;ID=YCR079W;Name=PTC6
III	S-MART	transcript	258415	258651	.	-	.	seqedit=false;p_id=P293;gene_id=YCR081C-A;tss_id=TSS1653;nbOverlaps=0;ID=YCR081C-A;Name=YCR081C-A
III	S-MART	transcript	254371	258654	.	+	.	seqedit=false;p_id=P6598;gene_id=YCR081W;tss_id=TSS6666;nbOverlaps=0;ID=YCR081W;Name=SRB8
III	S-MART	transcript	258883	259269	.	+	.	seqedit=false;p_id=P3041;gene_id=YCR082W;tss_id=TSS1151;nbOverlaps=0;ID=YCR082W;Name=AHC2
III	S-MART	transcript	259578	259961	.	+	.	seqedit=false;p_id=P1120;gene_id=YCR083W;tss_id=TSS5200;nbOverlaps=0;ID=YCR083W;Name=TRX3
III	S-MART	transcript	260311	262452	.	-	.	seqedit=false;p_id=P2522;gene_id=YCR084C;tss_id=TSS833;nbOverlaps=0;ID=YCR084C;Name=TUP1
III	S-MART	transcript	263392	263964	.	+	.	seqedit=false;p_id=P2226;gene_id=YCR086W;tss_id=TSS3555;nbOverlaps=0;ID=YCR086W;Name=CSM1
III	S-MART	transcript	262916	263269	.	+	.	seqedit=false;p_id=P1873;gene_id=YCR085W;tss_id=TSS5563;nbOverlaps=0;ID=YCR085W;Name=YCR085W
III	S-MART	transcript	264006	264467	.	-	.	seqedit=false;p_id=P2106;gene_id=YCR087C-A;tss_id=TSS4325;nbOverlaps=0;ID=YCR087C-A;Name=YCR087C-A
III	S-MART	transcript	265068	266846	.	+	.	seqedit=false;p_id=P3082;gene_id=YCR088W;tss_id=TSS6383;nbOverlaps=0;ID=YCR088W;Name=ABP1
III	S-MART	transcript	263976	264491	.	+	.	seqedit=false;p_id=P3556;gene_id=YCR087W;tss_id=TSS49;nbOverlaps=0;ID=YCR087W;Name=YCR087W
III	S-MART	transcript	267434	272263	.	+	.	seqedit=false;p_id=P6052;gene_id=YCR089W;tss_id=TSS6881;nbOverlaps=0;ID=YCR089W;Name=FIG2
III	S-MART	transcript	274404	276566	.	+	.	seqedit=false;p_id=P2017;gene_id=YCR091W;tss_id=TSS6164;nbOverlaps=0;ID=YCR091W;Name=KIN82
III	S-MART	transcript	272315	272863	.	-	.	seqedit=false;p_id=P1700;gene_id=YCR090C;tss_id=TSS3057;nbOverlaps=0;ID=YCR090C;Name=YCR090C
III	S-MART	transcript	276764	279820	.	-	.	seqedit=false;p_id=P1245;gene_id=YCR092C;tss_id=TSS6407;nbOverlaps=0;ID=YCR092C;Name=MSH3
III	S-MART	transcript	280117	286443	.	+	.	seqedit=false;p_id=P5444;gene_id=YCR093W;tss_id=TSS1655;nbOverlaps=0;ID=YCR093W;Name=CDC39
III	S-MART	transcript	286762	287937	.	+	.	seqedit=false;p_id=P682;gene_id=YCR094W;tss_id=TSS5456;nbOverlaps=0;ID=YCR094W;Name=CDC50
III	S-MART	transcript	288170	289258	.	-	.	seqedit=false;p_id=P4511;gene_id=YCR095C;tss_id=TSS2794;nbOverlaps=0;ID=YCR095C;Name=OCA4
III	S-MART	transcript	289639	289797	.	+	.	seqedit=false;p_id=P4130;gene_id=YCR095W-A;tss_id=TSS6983;nbOverlaps=0;ID=YCR095W-A;Name=YCR095W-A
III	S-MART	transcript	293179	293538	.	-	.	seqedit=false;p_id=P602;gene_id=YCR096C;tss_id=TSS134;nbOverlaps=0;ID=YCR096C;Name=HMRA2
III	S-MART	transcript	293835	294321	.	+	.	seqedit=false;p_id=P1614;gene_id=YCR097W;tss_id=TSS614;nbOverlaps=0;ID=YCR097W;Name=HMRA1
III	S-MART	exon	293835	293939	.	+	.	ID=YCR097W-exon1;Name=HMRA1-exon1;Parent=YCR097W
III	S-MART	exon	293994	294239	.	+	.	ID=YCR097W-exon2;Name=HMRA1-exon2;Parent=YCR097W
III	S-MART	exon	294292	294321	.	+	.	ID=YCR097W-exon3;Name=HMRA1-exon3;Parent=YCR097W
XV	S-MART	transcript	580250	581359	.	+	.	seqedit=false;p_id=P5151;gene_id=YOR136W;tss_id=TSS4575;nbOverlaps=0;ID=YOR136W;Name=IDH2
XVI	S-MART	transcript	335948	336367	.	+	.	seqedit=false;p_id=P1092;gene_id=YPL114W;tss_id=TSS6654;nbOverlaps=0;ID=YPL114W;Name=YPL114W
XVI	S-MART	transcript	329606	331699	.	+	.	seqedit=false;p_id=P3291;gene_id=YPL116W;tss_id=TSS3575;nbOverlaps=0;ID=YPL116W;Name=HOS3
XVI	S-MART	transcript	327864	328730	.	-	.	seqedit=false;p_id=P1002;gene_id=YPL117C;tss_id=TSS1927;nbOverlaps=0;ID=YPL117C;Name=IDI1
Mito	S-MART	transcript	9374	9447	.	+	.	seqedit=false;gene_id=tW(UCA)Q;tss_id=TSS3383;nbOverlaps=0;ID=tW(UCA)Q;Name=tW(UCA)Q
III	S-MART	transcript	294439	294705	.	+	.	seqedit=false;p_id=P988;gene_id=YCR097W-A;tss_id=TSS1481;nbOverlaps=0;ID=YCR097W-A;Name=YCR097W-A
III	S-MART	transcript	297049	298605	.	-	.	seqedit=false;p_id=P6175;gene_id=YCR098C;tss_id=TSS5031;nbOverlaps=0;ID=YCR098C;Name=GIT1
IV	S-MART	transcript	1150842	1150941	.	-	.	seqedit=false;gene_id=tX(XXX)D;tss_id=TSS4353;nbOverlaps=0;ID=tX(XXX)D;Name=tX(XXX)D
VI	S-MART	transcript	167437	167525	.	+	.	seqedit=false;gene_id=tY(GUA)F1;tss_id=TSS3105;nbOverlaps=0;ID=tY(GUA)F1;Name=SUP11
VI	S-MART	exon	167437	167475	.	+	.	ID=tY(GUA)F1-exon1;Name=SUP11-exon1;Parent=tY(GUA)F1
VI	S-MART	exon	167490	167525	.	+	.	ID=tY(GUA)F1-exon2;Name=SUP11-exon2;Parent=tY(GUA)F1
XV	S-MART	transcript	581813	583681	.	-	.	seqedit=false;p_id=P3810;gene_id=YOR137C;tss_id=TSS4115;nbOverlaps=0;ID=YOR137C;Name=SIA1
X	S-MART	transcript	281185	283380	.	+	.	seqedit=false;p_id=P4618;gene_id=YJL082W;tss_id=TSS3355;nbOverlaps=0;ID=YJL082W;Name=IML2
XVI	S-MART	transcript	576552	577358	.	+	.	seqedit=false;p_id=P1264;gene_id=YPR009W;tss_id=TSS4202;nbOverlaps=0;ID=YPR009W;Name=SUT2
VI	S-MART	transcript	210619	210707	.	-	.	seqedit=false;gene_id=tY(GUA)F2;tss_id=TSS244;nbOverlaps=0;ID=tY(GUA)F2;Name=SUP6
VI	S-MART	exon	210619	210654	.	-	.	ID=tY(GUA)F2-exon1;Name=SUP6-exon1;Parent=tY(GUA)F2
VI	S-MART	exon	210669	210707	.	-	.	ID=tY(GUA)F2-exon2;Name=SUP6-exon2;Parent=tY(GUA)F2
XV	S-MART	transcript	584309	586324	.	-	.	seqedit=false;p_id=P867;gene_id=YOR138C;tss_id=TSS1240;nbOverlaps=0;ID=YOR138C;Name=RUP1
X	S-MART	transcript	354244	354332	.	+	.	seqedit=false;gene_id=tY(GUA)J1;tss_id=TSS3589;nbOverlaps=0;ID=tY(GUA)J1;Name=SUP7
X	S-MART	exon	354244	354282	.	+	.	ID=tY(GUA)J1-exon1;Name=SUP7-exon1;Parent=tY(GUA)J1
X	S-MART	exon	354297	354332	.	+	.	ID=tY(GUA)J1-exon2;Name=SUP7-exon2;Parent=tY(GUA)J1
V	S-MART	transcript	487331	487402	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)E3;tss_id=TSS1389;nbOverlaps=1957;ID=tE(UUC)E3;Name=tE(UUC)E3
XVI	S-MART	transcript	577585	581196	.	-	.	seqedit=false;p_id=P6154;gene_id=YPR010C;tss_id=TSS4646;nbOverlaps=0;ID=YPR010C;Name=RPA135
VII	S-MART	transcript	811738	813054	.	+	.	seqedit=false;p_id=P2398;gene_id=YGR161W-A;tss_id=TSS5991;nbOverlaps=0;ID=YGR161W-A;Name=YGR161W-A
VII	S-MART	transcript	811738	817051	.	+	.	seqedit=false;p_id=P5315;gene_id=YGR161W-B;tss_id=TSS5991;nbOverlaps=0;ID=YGR161W-B;Name=YGR161W-B
VII	S-MART	exon	811738	813030	.	+	.	ID=YGR161W-B-exon1;Name=YGR161W-B-exon1;Parent=YGR161W-B
VII	S-MART	exon	813032	817051	.	+	.	ID=YGR161W-B-exon2;Name=YGR161W-B-exon2;Parent=YGR161W-B
VII	S-MART	transcript	810227	810505	.	+	.	seqedit=false;p_id=P4408;gene_id=YGR161W-C;tss_id=TSS4738;nbOverlaps=0;ID=YGR161W-C;Name=YGR161W-C
VII	S-MART	transcript	827552	828577	.	+	.	seqedit=false;p_id=P6624;gene_id=YGR163W;tss_id=TSS5684;nbOverlaps=0;ID=YGR163W;Name=GTR2
VII	S-MART	transcript	824059	826917	.	+	.	seqedit=false;p_id=P5356;gene_id=YGR162W;tss_id=TSS2786;nbOverlaps=0;ID=YGR162W;Name=TIF4631
VII	S-MART	transcript	829116	830153	.	+	.	seqedit=false;p_id=P1401;gene_id=YGR165W;tss_id=TSS42;nbOverlaps=0;ID=YGR165W;Name=MRPS35
XVI	S-MART	transcript	324024	324287	.	-	.	seqedit=false;p_id=P5072;gene_id=YPL119C-A;tss_id=TSS405;nbOverlaps=0;ID=YPL119C-A;Name=YPL119C-A
VII	S-MART	transcript	828625	828960	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;p_id=P2771;gene_id=YGR164W;tss_id=TSS3815;nbOverlaps=12;ID=YGR164W;Name=YGR164W
XIV	S-MART	transcript	307401	308612	.	-	.	seqedit=false;p_id=P229;gene_id=YNL175C;tss_id=TSS2715;nbOverlaps=0;ID=YNL175C;Name=NOP13
VII	S-MART	transcript	830515	832197	.	+	.	seqedit=false;p_id=P1773;gene_id=YGR166W;tss_id=TSS2760;nbOverlaps=0;ID=YGR166W;Name=TRS65
VII	S-MART	transcript	832456	833157	.	+	.	seqedit=false;p_id=P1299;gene_id=YGR167W;tss_id=TSS5408;nbOverlaps=0;ID=YGR167W;Name=CLC1
VII	S-MART	transcript	834689	835903	.	-	.	seqedit=false;p_id=P2523;gene_id=YGR169C;tss_id=TSS1997;nbOverlaps=0;ID=YGR169C;Name=PUS6
VII	S-MART	transcript	833352	834482	.	-	.	seqedit=false;p_id=P1772;gene_id=YGR168C;tss_id=TSS4619;nbOverlaps=0;ID=YGR168C;Name=YGR168C
VII	S-MART	transcript	836387	836665	.	-	.	seqedit=false;p_id=P4156;gene_id=YGR169C-A;tss_id=TSS1361;nbOverlaps=0;ID=YGR169C-A;Name=YGR169C-A
VII	S-MART	transcript	837142	840558	.	+	.	seqedit=false;p_id=P2855;gene_id=YGR170W;tss_id=TSS6295;nbOverlaps=0;ID=YGR170W;Name=PSD2
VII	S-MART	transcript	840824	842551	.	-	.	seqedit=false;p_id=P2309;gene_id=YGR171C;tss_id=TSS4348;nbOverlaps=0;ID=YGR171C;Name=MSM1
VII	S-MART	transcript	842845	843591	.	-	.	seqedit=false;p_id=P5909;gene_id=YGR172C;tss_id=TSS38;nbOverlaps=0;ID=YGR172C;Name=YIP1
VII	S-MART	transcript	843854	844960	.	+	.	seqedit=false;p_id=P2543;gene_id=YGR173W;tss_id=TSS5771;nbOverlaps=0;ID=YGR173W;Name=RBG2
VII	S-MART	transcript	845893	846405	.	-	.	seqedit=false;p_id=P3055;gene_id=YGR174C;tss_id=TSS1891;nbOverlaps=0;ID=YGR174C;Name=CBP4
VII	S-MART	transcript	846655	846741	.	+	.	seqedit=false;p_id=P5704;gene_id=YGR174W-A;tss_id=TSS2472;nbOverlaps=0;ID=YGR174W-A;Name=YGR174W-A
VII	S-MART	transcript	846933	848423	.	-	.	seqedit=false;p_id=P3908;gene_id=YGR175C;tss_id=TSS4384;nbOverlaps=0;ID=YGR175C;Name=ERG1
VII	S-MART	transcript	848829	850436	.	-	.	seqedit=false;p_id=P2891;gene_id=YGR177C;tss_id=TSS44;nbOverlaps=0;ID=YGR177C;Name=ATF2
VIII	S-MART	transcript	220108	220500	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:4920:6738#0--HWUSI-EAS1656_0009_FC:3:11:1274:4067#0--HWUSI-EAS1656_0009_F;p_id=P5635;gene_id=YHR059W;tss_id=TSS681;nbOverlaps=26;ID=YHR059W;Name=FYV4
VII	S-MART	transcript	848720	849067	.	+	.	seqedit=false;p_id=P197;gene_id=YGR176W;tss_id=TSS5436;nbOverlaps=0;ID=YGR176W;Name=YGR176W
XVI	S-MART	transcript	582373	582734	.	-	.	seqedit=false;p_id=P6040;gene_id=YPR010C-A;tss_id=TSS2187;nbOverlaps=0;ID=YPR010C-A;Name=YPR010C-A
XVI	S-MART	exon	582373	582558	.	-	.	ID=YPR010C-A-exon1;Name=YPR010C-A-exon1;Parent=YPR010C-A
XVI	S-MART	exon	582702	582734	.	-	.	ID=YPR010C-A-exon2;Name=YPR010C-A-exon2;Parent=YPR010C-A
VII	S-MART	transcript	851047	853215	.	-	.	seqedit=false;p_id=P3682;gene_id=YGR178C;tss_id=TSS1393;nbOverlaps=0;ID=YGR178C;Name=PBP1
VII	S-MART	transcript	853675	854895	.	-	.	seqedit=false;p_id=P4729;gene_id=YGR179C;tss_id=TSS733;nbOverlaps=0;ID=YGR179C;Name=OKP1
VII	S-MART	transcript	855264	856301	.	-	.	seqedit=false;p_id=P358;gene_id=YGR180C;tss_id=TSS1560;nbOverlaps=0;ID=YGR180C;Name=RNR4
VII	S-MART	transcript	858287	858604	.	+	.	seqedit=false;p_id=P5463;gene_id=YGR181W;tss_id=TSS3376;nbOverlaps=0;ID=YGR181W;Name=TIM13
XIII	S-MART	transcript	168795	168883	.	+	.	seqedit=false;gene_id=tY(GUA)M1;tss_id=TSS3819;nbOverlaps=0;ID=tY(GUA)M1;Name=SUP5
XIII	S-MART	exon	168795	168833	.	+	.	ID=tY(GUA)M1-exon1;Name=SUP5-exon1;Parent=tY(GUA)M1
XIII	S-MART	exon	168848	168883	.	+	.	ID=tY(GUA)M1-exon2;Name=SUP5-exon2;Parent=tY(GUA)M1
VII	S-MART	transcript	859063	859476	.	-	.	seqedit=false;p_id=P3128;gene_id=YGR183C;tss_id=TSS1828;nbOverlaps=0;ID=YGR183C;Name=QCR9
VII	S-MART	exon	859063	859260	.	-	.	ID=YGR183C-exon1;Name=QCR9-exon1;Parent=YGR183C
VII	S-MART	exon	859474	859476	.	-	.	ID=YGR183C-exon2;Name=QCR9-exon2;Parent=YGR183C
VII	S-MART	transcript	858551	858904	.	-	.	seqedit=false;p_id=P2031;gene_id=YGR182C;tss_id=TSS6592;nbOverlaps=0;ID=YGR182C;Name=YGR182C
VII	S-MART	transcript	859901	865753	.	-	.	seqedit=false;p_id=P1817;gene_id=YGR184C;tss_id=TSS5482;nbOverlaps=0;ID=YGR184C;Name=UBR1
VII	S-MART	transcript	866336	867520	.	-	.	seqedit=false;p_id=P541;gene_id=YGR185C;tss_id=TSS2107;nbOverlaps=0;ID=YGR185C;Name=TYS1
VII	S-MART	transcript	867774	869981	.	+	.	seqedit=false;p_id=P4008;gene_id=YGR186W;tss_id=TSS2486;nbOverlaps=0;ID=YGR186W;Name=TFG1
VII	S-MART	transcript	870232	871416	.	-	.	seqedit=false;p_id=P204;gene_id=YGR187C;tss_id=TSS138;nbOverlaps=0;ID=YGR187C;Name=HGH1
VII	S-MART	transcript	872044	875109	.	-	.	seqedit=false;p_id=P2358;gene_id=YGR188C;tss_id=TSS4911;nbOverlaps=0;ID=YGR188C;Name=BUB1
VII	S-MART	transcript	876669	878192	.	-	.	seqedit=false;p_id=P645;gene_id=YGR189C;tss_id=TSS6833;nbOverlaps=0;ID=YGR189C;Name=CRH1
VII	S-MART	transcript	880420	882231	.	+	.	seqedit=false;p_id=P5817;gene_id=YGR191W;tss_id=TSS6130;nbOverlaps=0;ID=YGR191W;Name=HIP1
XVI	S-MART	transcript	322071	323744	.	+	.	seqedit=false;p_id=P1329;gene_id=YPL120W;tss_id=TSS1792;nbOverlaps=0;ID=YPL120W;Name=VPS30
VII	S-MART	transcript	880296	880661	.	-	.	seqedit=false;p_id=P4638;gene_id=YGR190C;tss_id=TSS815;nbOverlaps=0;ID=YGR190C;Name=YGR190C
XIV	S-MART	transcript	308074	308646	.	+	.	seqedit=false;p_id=P82;gene_id=YNL174W;tss_id=TSS25;nbOverlaps=0;ID=YNL174W;Name=YNL174W
VII	S-MART	transcript	882812	883810	.	-	.	seqedit=false;p_id=P5233;gene_id=YGR192C;tss_id=TSS671;nbOverlaps=0;ID=YGR192C;Name=TDH3
VII	S-MART	transcript	884509	885741	.	-	.	seqedit=false;p_id=P3857;gene_id=YGR193C;tss_id=TSS585;nbOverlaps=0;ID=YGR193C;Name=PDX1
VII	S-MART	transcript	886073	887875	.	-	.	seqedit=false;p_id=P5874;gene_id=YGR194C;tss_id=TSS59;nbOverlaps=0;ID=YGR194C;Name=XKS1
VII	S-MART	transcript	888882	889622	.	+	.	seqedit=false;p_id=P4531;gene_id=YGR195W;tss_id=TSS2789;nbOverlaps=0;ID=YGR195W;Name=SKI6
VII	S-MART	transcript	889733	892186	.	-	.	seqedit=false;p_id=P6014;gene_id=YGR196C;tss_id=TSS4890;nbOverlaps=0;ID=YGR196C;Name=FYV8
VII	S-MART	transcript	892497	894140	.	-	.	seqedit=false;p_id=P667;gene_id=YGR197C;tss_id=TSS5985;nbOverlaps=0;ID=YGR197C;Name=SNG1
XIII	S-MART	transcript	837928	838016	.	+	.	seqedit=false;gene_id=tY(GUA)M2;tss_id=TSS39;nbOverlaps=0;ID=tY(GUA)M2;Name=SUP8
XIII	S-MART	exon	837928	837966	.	+	.	ID=tY(GUA)M2-exon1;Name=SUP8-exon1;Parent=tY(GUA)M2
XIII	S-MART	exon	837981	838016	.	+	.	ID=tY(GUA)M2-exon2;Name=SUP8-exon2;Parent=tY(GUA)M2
VII	S-MART	transcript	894693	897146	.	+	.	seqedit=false;p_id=P2853;gene_id=YGR198W;tss_id=TSS6493;nbOverlaps=0;ID=YGR198W;Name=YPP1
VII	S-MART	transcript	897502	899781	.	+	.	seqedit=false;p_id=P4689;gene_id=YGR199W;tss_id=TSS504;nbOverlaps=0;ID=YGR199W;Name=PMT6
VII	S-MART	transcript	899904	902270	.	-	.	seqedit=false;p_id=P2675;gene_id=YGR200C;tss_id=TSS6430;nbOverlaps=0;ID=YGR200C;Name=ELP2
VII	S-MART	transcript	903474	904748	.	-	.	seqedit=false;p_id=P1184;gene_id=YGR202C;tss_id=TSS6011;nbOverlaps=0;ID=YGR202C;Name=PCT1
VII	S-MART	transcript	902520	903197	.	-	.	seqedit=false;p_id=P4994;gene_id=YGR201C;tss_id=TSS2419;nbOverlaps=0;ID=YGR201C;Name=YGR201C
VII	S-MART	transcript	905237	905683	.	+	.	seqedit=false;p_id=P1463;gene_id=YGR203W;tss_id=TSS4189;nbOverlaps=0;ID=YGR203W;Name=YCH1
VII	S-MART	transcript	909061	909174	.	-	.	seqedit=false;p_id=P5055;gene_id=YGR204C-A;tss_id=TSS6969;nbOverlaps=0;ID=YGR204C-A;Name=YGR204C-A
VII	S-MART	transcript	905934	908774	.	+	.	seqedit=false;p_id=P6506;gene_id=YGR204W;tss_id=TSS2228;nbOverlaps=0;ID=YGR204W;Name=ADE3
VII	S-MART	transcript	909213	910085	.	+	.	seqedit=false;p_id=P4599;gene_id=YGR205W;tss_id=TSS3821;nbOverlaps=0;ID=YGR205W;Name=TDA10
VII	S-MART	transcript	910432	910737	.	+	.	seqedit=false;p_id=P3437;gene_id=YGR206W;tss_id=TSS1248;nbOverlaps=0;ID=YGR206W;Name=MVB12
VII	S-MART	transcript	910843	911628	.	-	.	seqedit=false;p_id=P1432;gene_id=YGR207C;tss_id=TSS1380;nbOverlaps=0;ID=YGR207C;Name=CIR1
VII	S-MART	transcript	911883	912812	.	+	.	seqedit=false;p_id=P6099;gene_id=YGR208W;tss_id=TSS2438;nbOverlaps=0;ID=YGR208W;Name=SER2
VII	S-MART	transcript	912913	913227	.	-	.	seqedit=false;p_id=P45;gene_id=YGR209C;tss_id=TSS5427;nbOverlaps=0;ID=YGR209C;Name=TRX2
VII	S-MART	transcript	915241	916701	.	+	.	seqedit=false;p_id=P3789;gene_id=YGR211W;tss_id=TSS37;nbOverlaps=0;ID=YGR211W;Name=ZPR1
VII	S-MART	transcript	913503	914738	.	-	.	seqedit=false;p_id=P4997;gene_id=YGR210C;tss_id=TSS1027;nbOverlaps=0;ID=YGR210C;Name=YGR210C
VII	S-MART	transcript	917040	918446	.	+	.	seqedit=false;p_id=P2495;gene_id=YGR212W;tss_id=TSS5534;nbOverlaps=0;ID=YGR212W;Name=SLI1
XIII	S-MART	transcript	78335	79690	.	-	.	seqedit=false;p_id=P989;gene_id=YML097C;tss_id=TSS2770;nbOverlaps=0;ID=YML097C;Name=VPS9
XIII	S-MART	transcript	79909	81486	.	+	.	seqedit=false;p_id=P1263;gene_id=YML096W;tss_id=TSS5719;nbOverlaps=0;ID=YML096W;Name=YML096W
XIII	S-MART	transcript	77267	77770	.	+	.	seqedit=false;p_id=P1498;gene_id=YML098W;tss_id=TSS2001;nbOverlaps=0;ID=YML098W;Name=TAF13
XIII	S-MART	transcript	74398	77040	.	-	.	seqedit=false;p_id=P1541;gene_id=YML099C;tss_id=TSS1063;nbOverlaps=0;ID=YML099C;Name=ARG81
XIII	S-MART	transcript	74229	74558	.	+	.	seqedit=false;p_id=P6328;gene_id=YML099W-A;tss_id=TSS1255;nbOverlaps=0;ID=YML099W-A;Name=YML099W-A
XIII	S-MART	transcript	70624	73920	.	+	.	seqedit=false;p_id=P47;gene_id=YML100W;tss_id=TSS5706;nbOverlaps=0;ID=YML100W;Name=TSL1
XVI	S-MART	transcript	320962	321630	.	-	.	seqedit=false;p_id=P2768;gene_id=YPL121C;tss_id=TSS709;nbOverlaps=0;ID=YPL121C;Name=MEI5
XIII	S-MART	transcript	70138	70311	.	+	.	seqedit=false;p_id=P4107;gene_id=YML100W-A;tss_id=TSS3457;nbOverlaps=0;ID=YML100W-A;Name=YML100W-A
XIV	S-MART	transcript	305070	306980	.	-	.	seqedit=false;p_id=P3677;gene_id=YNL176C;tss_id=TSS4417;nbOverlaps=0;ID=YNL176C;Name=TDA7
XIII	S-MART	transcript	69735	70088	.	-	.	seqedit=false;p_id=P3748;gene_id=YML101C;tss_id=TSS1871;nbOverlaps=0;ID=YML101C;Name=CUE4
XIII	S-MART	transcript	69409	69726	.	-	.	seqedit=false;p_id=P3673;gene_id=YML101C-A;tss_id=TSS6598;nbOverlaps=0;ID=YML101C-A;Name=YML101C-A
XIII	S-MART	transcript	68294	69700	.	+	.	seqedit=false;p_id=P1665;gene_id=YML102W;tss_id=TSS5592;nbOverlaps=0;ID=YML102W;Name=CAC2
XIII	S-MART	transcript	62582	67549	.	-	.	seqedit=false;p_id=P2817;gene_id=YML103C;tss_id=TSS5541;nbOverlaps=0;ID=YML103C;Name=NUP188
XIII	S-MART	transcript	58939	62322	.	-	.	seqedit=false;p_id=P3730;gene_id=YML104C;tss_id=TSS3456;nbOverlaps=0;ID=YML104C;Name=MDM1
XIII	S-MART	transcript	57866	58687	.	-	.	seqedit=false;p_id=P4063;gene_id=YML105C;tss_id=TSS4274;nbOverlaps=0;ID=YML105C;Name=SEC65
XIII	S-MART	transcript	56773	57453	.	+	.	seqedit=false;p_id=P215;gene_id=YML106W;tss_id=TSS982;nbOverlaps=0;ID=YML106W;Name=URA5
XIII	S-MART	transcript	55265	56269	.	-	.	seqedit=false;p_id=P1680;gene_id=YML107C;tss_id=TSS5576;nbOverlaps=0;ID=YML107C;Name=PML39
XIII	S-MART	transcript	51640	54468	.	+	.	seqedit=false;p_id=P802;gene_id=YML109W;tss_id=TSS4466;nbOverlaps=0;ID=YML109W;Name=ZDS2
XIII	S-MART	transcript	54793	55110	.	+	.	seqedit=false;p_id=P6587;gene_id=YML108W;tss_id=TSS2059;nbOverlaps=0;ID=YML108W;Name=YML108W
XIII	S-MART	transcript	50031	50954	.	-	.	seqedit=false;p_id=P3794;gene_id=YML110C;tss_id=TSS3627;nbOverlaps=0;ID=YML110C;Name=COQ5
XIII	S-MART	transcript	46942	49704	.	+	.	seqedit=false;p_id=P5622;gene_id=YML111W;tss_id=TSS2242;nbOverlaps=0;ID=YML111W;Name=BUL2
XIII	S-MART	transcript	45063	45953	.	+	.	seqedit=false;p_id=P3061;gene_id=YML112W;tss_id=TSS1288;nbOverlaps=0;ID=YML112W;Name=CTK3
VIII	S-MART	transcript	221534	222478	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:72:11334:6196#0--HWUSI-EAS1656_0009_FC:3:119:3360:19511#0--HWUSI-EAS1656_000;p_id=P3381;gene_id=YHR061C;tss_id=TSS588;nbOverlaps=27;ID=YHR061C;Name=GIC1
XIII	S-MART	transcript	44045	44791	.	+	.	seqedit=false;p_id=P4727;gene_id=YML113W;tss_id=TSS343;nbOverlaps=0;ID=YML113W;Name=DAT1
XIII	S-MART	transcript	42043	43575	.	-	.	seqedit=false;p_id=P374;gene_id=YML114C;tss_id=TSS4162;nbOverlaps=0;ID=YML114C;Name=TAF8
XIII	S-MART	transcript	40187	41794	.	-	.	seqedit=false;p_id=P3433;gene_id=YML115C;tss_id=TSS1794;nbOverlaps=0;ID=YML115C;Name=VAN1
XIII	S-MART	transcript	38196	39824	.	+	.	seqedit=false;p_id=P2901;gene_id=YML116W;tss_id=TSS3776;nbOverlaps=0;ID=YML116W;Name=ATR1
XIII	S-MART	transcript	37472	37774	.	+	.	seqedit=false;p_id=P732;gene_id=YML116W-A;tss_id=TSS5009;nbOverlaps=0;ID=YML116W-A;Name=YML116W-A
XIII	S-MART	transcript	34243	37647	.	+	.	seqedit=false;p_id=P6459;gene_id=YML117W;tss_id=TSS5126;nbOverlaps=0;ID=YML117W;Name=NAB6
XIII	S-MART	transcript	32334	33851	.	+	.	seqedit=false;p_id=P1651;gene_id=YML118W;tss_id=TSS2399;nbOverlaps=0;ID=YML118W;Name=NGL3
XIII	S-MART	transcript	28266	29807	.	-	.	seqedit=false;p_id=P5682;gene_id=YML120C;tss_id=TSS4577;nbOverlaps=0;ID=YML120C;Name=NDI1
XIII	S-MART	transcript	30611	31684	.	+	.	seqedit=false;p_id=P5959;gene_id=YML119W;tss_id=TSS4740;nbOverlaps=0;ID=YML119W;Name=YML119W
XIII	S-MART	transcript	26930	27862	.	+	.	seqedit=false;p_id=P5507;gene_id=YML121W;tss_id=TSS3696;nbOverlaps=0;ID=YML121W;Name=GTR1
XIII	S-MART	transcript	24037	25800	.	-	.	seqedit=false;p_id=P2135;gene_id=YML123C;tss_id=TSS336;nbOverlaps=0;ID=YML123C;Name=PHO84
XIII	S-MART	transcript	26038	26418	.	-	.	seqedit=false;p_id=P3741;gene_id=YML122C;tss_id=TSS422;nbOverlaps=0;ID=YML122C;Name=YML122C
XIII	S-MART	transcript	22048	23683	.	-	.	seqedit=false;p_id=P3300;gene_id=YML124C;tss_id=TSS2957;nbOverlaps=0;ID=YML124C;Name=TUB3
XIII	S-MART	exon	22048	23360	.	-	.	ID=YML124C-exon1;Name=TUB3-exon1;Parent=YML124C
XIII	S-MART	exon	23659	23683	.	-	.	ID=YML124C-exon2;Name=TUB3-exon2;Parent=YML124C
XIII	S-MART	transcript	20761	21699	.	-	.	seqedit=false;p_id=P4353;gene_id=YML125C;tss_id=TSS1106;nbOverlaps=0;ID=YML125C;Name=PGA3
XVI	S-MART	transcript	319226	320767	.	-	.	seqedit=false;p_id=P4017;gene_id=YPL122C;tss_id=TSS633;nbOverlaps=0;ID=YPL122C;Name=TFB2
XIII	S-MART	transcript	19060	20535	.	-	.	seqedit=false;p_id=P2305;gene_id=YML126C;tss_id=TSS6039;nbOverlaps=0;ID=YML126C;Name=ERG13
XIII	S-MART	transcript	17064	18809	.	+	.	seqedit=false;p_id=P1204;gene_id=YML127W;tss_id=TSS119;nbOverlaps=0;ID=YML127W;Name=RSC9
XIII	S-MART	transcript	15135	16676	.	-	.	seqedit=false;p_id=P2932;gene_id=YML128C;tss_id=TSS320;nbOverlaps=0;ID=YML128C;Name=MSC1
XIII	S-MART	transcript	14541	14753	.	-	.	seqedit=false;p_id=P6541;gene_id=YML129C;tss_id=TSS533;nbOverlaps=0;ID=YML129C;Name=COX14
XIII	S-MART	transcript	11483	13174	.	-	.	seqedit=false;p_id=P432;gene_id=YML130C;tss_id=TSS5446;nbOverlaps=0;ID=YML130C;Name=ERO1
X	S-MART	transcript	225055	226737	.	+	.	seqedit=false;p_id=P2463;gene_id=YJL105W;tss_id=TSS4170;nbOverlaps=0;ID=YJL105W;Name=SET4
XIII	S-MART	transcript	7244	8383	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:6411:16379#0--HWUSI-EAS1656_0009_FC:3:79:10015:12707#0--HWUSI-EAS1656_000;p_id=P4608;gene_id=YML132W;tss_id=TSS1705;nbOverlaps=3;ID=YML132W;Name=COS3
XIII	S-MART	transcript	10198	11295	.	+	.	seqedit=false;p_id=P1095;gene_id=YML131W;tss_id=TSS2712;nbOverlaps=0;ID=YML131W;Name=YML131W
XIII	S-MART	transcript	1610	2185	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P6280;gene_id=YML133W-A;tss_id=TSS1926;nbOverlaps=32;ID=YML133W-A;Name=YML133W-A
XIII	S-MART	transcript	461	4684	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P780;gene_id=YML133C;tss_id=TSS6758;nbOverlaps=469;ID=YML133C;Name=YML133C
XIII	S-MART	exon	461	3791	.	-	.	ID=YML133C-exon1;Name=YML133C-exon1;Parent=YML133C
XIII	S-MART	exon	3891	4684	.	-	.	ID=YML133C-exon2;Name=YML133C-exon2;Parent=YML133C
XV	S-MART	transcript	593057	594046	.	+	.	seqedit=false;p_id=P5548;gene_id=YOR142W;tss_id=TSS4918;nbOverlaps=0;ID=YOR142W;Name=LSC1
XIII	S-MART	transcript	827	1309	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P3261;gene_id=YML133W-B;tss_id=TSS5493;nbOverlaps=74;ID=YML133W-B;Name=YML133W-B
X	S-MART	transcript	278841	280655	.	+	.	seqedit=false;p_id=P2026;gene_id=YJL083W;tss_id=TSS3726;nbOverlaps=0;ID=YJL083W;Name=TAX4
XIII	S-MART	transcript	269019	271136	.	-	.	seqedit=false;p_id=P2684;gene_id=YMR001C;tss_id=TSS6103;nbOverlaps=0;ID=YMR001C;Name=CDC5
XIII	S-MART	transcript	271347	271577	.	-	.	seqedit=false;p_id=P2242;gene_id=YMR001C-A;tss_id=TSS687;nbOverlaps=0;ID=YMR001C-A;Name=YMR001C-A
VIII	S-MART	transcript	222877	223758	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:6782:11762#0--HWUSI-EAS1656_0009_FC:3:111:9684:14926#0--HWUSI-EAS1656_000;p_id=P3252;gene_id=YHR062C;tss_id=TSS190;nbOverlaps=81;ID=YHR062C;Name=RPP1
XIII	S-MART	transcript	272193	272663	.	+	.	seqedit=false;p_id=P572;gene_id=YMR002W;tss_id=TSS4734;nbOverlaps=0;ID=YMR002W;Name=MIC17
XVI	S-MART	transcript	592332	593069	.	-	.	seqedit=false;p_id=P823;gene_id=YPR016C;tss_id=TSS5147;nbOverlaps=0;ID=YPR016C;Name=TIF6
XIII	S-MART	transcript	273118	273714	.	+	.	seqedit=false;p_id=P907;gene_id=YMR003W;tss_id=TSS958;nbOverlaps=0;ID=YMR003W;Name=AIM34
XIII	S-MART	transcript	274017	275552	.	+	.	seqedit=false;p_id=P2942;gene_id=YMR004W;tss_id=TSS877;nbOverlaps=0;ID=YMR004W;Name=MVP1
XIII	S-MART	transcript	276045	277211	.	+	.	seqedit=false;p_id=P3590;gene_id=YMR005W;tss_id=TSS6393;nbOverlaps=0;ID=YMR005W;Name=TAF4
XIII	S-MART	transcript	277561	279681	.	-	.	seqedit=false;p_id=P5601;gene_id=YMR006C;tss_id=TSS5675;nbOverlaps=0;ID=YMR006C;Name=PLB2
XIII	S-MART	transcript	280590	282584	.	-	.	seqedit=false;p_id=P2318;gene_id=YMR008C;tss_id=TSS5626;nbOverlaps=0;ID=YMR008C;Name=PLB1
XIII	S-MART	transcript	279960	280340	.	+	.	seqedit=false;p_id=P3860;gene_id=YMR007W;tss_id=TSS146;nbOverlaps=0;ID=YMR007W;Name=YMR007W
XIII	S-MART	transcript	284102	284641	.	+	.	seqedit=false;p_id=P6480;gene_id=YMR009W;tss_id=TSS6846;nbOverlaps=0;ID=YMR009W;Name=ADI1
XIII	S-MART	transcript	288079	289704	.	+	.	seqedit=false;p_id=P6578;gene_id=YMR011W;tss_id=TSS2635;nbOverlaps=0;ID=YMR011W;Name=HXT2
XIII	S-MART	transcript	285100	286317	.	+	.	seqedit=false;p_id=P1699;gene_id=YMR010W;tss_id=TSS4312;nbOverlaps=0;ID=YMR010W;Name=YMR010W
XIII	S-MART	transcript	291134	294967	.	+	.	seqedit=false;p_id=P972;gene_id=YMR012W;tss_id=TSS5977;nbOverlaps=0;ID=YMR012W;Name=CLU1
XIII	S-MART	transcript	295179	296738	.	-	.	seqedit=false;p_id=P2560;gene_id=YMR013C;tss_id=TSS4595;nbOverlaps=0;ID=YMR013C;Name=SEC59
XIII	S-MART	transcript	296471	296620	.	-	.	seqedit=false;p_id=P6552;gene_id=YMR013C-A;tss_id=TSS2095;nbOverlaps=0;ID=YMR013C-A;Name=YMR013C-A
X	S-MART	transcript	649776	651269	.	+	.	seqedit=false;p_id=P4442;gene_id=YJR122W;tss_id=TSS2373;nbOverlaps=0;ID=YJR122W;Name=IBA57
X	S-MART	transcript	651901	652578	.	+	.	seqedit=false;p_id=P3930;gene_id=YJR123W;tss_id=TSS5265;nbOverlaps=0;ID=YJR123W;Name=RPS5
XVI	S-MART	transcript	317641	318945	.	-	.	seqedit=false;p_id=P437;gene_id=YPL123C;tss_id=TSS4101;nbOverlaps=0;ID=YPL123C;Name=RNY1
X	S-MART	transcript	654737	655963	.	-	.	seqedit=false;p_id=P6050;gene_id=YJR125C;tss_id=TSS3513;nbOverlaps=0;ID=YJR125C;Name=ENT3
X	S-MART	transcript	652892	654238	.	-	.	seqedit=false;p_id=P5882;gene_id=YJR124C;tss_id=TSS5731;nbOverlaps=0;ID=YJR124C;Name=YJR124C
X	S-MART	transcript	656254	658689	.	-	.	seqedit=false;p_id=P1527;gene_id=YJR126C;tss_id=TSS3999;nbOverlaps=0;ID=YJR126C;Name=VPS70
X	S-MART	transcript	658917	663059	.	-	.	seqedit=false;p_id=P1901;gene_id=YJR127C;tss_id=TSS1135;nbOverlaps=0;ID=YJR127C;Name=RSF2
X	S-MART	transcript	665218	667137	.	-	.	seqedit=false;p_id=P4680;gene_id=YJR130C;tss_id=TSS2225;nbOverlaps=0;ID=YJR130C;Name=STR2
X	S-MART	transcript	662921	663280	.	+	.	seqedit=false;p_id=P1141;gene_id=YJR128W;tss_id=TSS5973;nbOverlaps=0;ID=YJR128W;Name=YJR128W
X	S-MART	transcript	664000	665019	.	-	.	seqedit=false;p_id=P3828;gene_id=YJR129C;tss_id=TSS69;nbOverlaps=0;ID=YJR129C;Name=YJR129C
X	S-MART	transcript	667644	669293	.	+	.	seqedit=false;p_id=P3232;gene_id=YJR131W;tss_id=TSS1165;nbOverlaps=0;ID=YJR131W;Name=MNS1
X	S-MART	transcript	669522	672668	.	+	.	seqedit=false;p_id=P4465;gene_id=YJR132W;tss_id=TSS1895;nbOverlaps=0;ID=YJR132W;Name=NMD5
X	S-MART	transcript	672991	673620	.	+	.	seqedit=false;p_id=P263;gene_id=YJR133W;tss_id=TSS6152;nbOverlaps=0;ID=YJR133W;Name=XPT1
X	S-MART	transcript	673729	675852	.	-	.	seqedit=false;p_id=P2153;gene_id=YJR134C;tss_id=TSS326;nbOverlaps=0;ID=YJR134C;Name=SGM1
X	S-MART	transcript	676059	676778	.	-	.	seqedit=false;p_id=P2515;gene_id=YJR135C;tss_id=TSS5613;nbOverlaps=0;ID=YJR135C;Name=MCM22
X	S-MART	transcript	676971	677234	.	+	.	seqedit=false;p_id=P5435;gene_id=YJR135W-A;tss_id=TSS6790;nbOverlaps=0;ID=YJR135W-A;Name=TIM8
X	S-MART	transcript	677441	678706	.	-	.	seqedit=false;p_id=P6012;gene_id=YJR136C;tss_id=TSS6373;nbOverlaps=0;ID=YJR136C;Name=TTI2
X	S-MART	transcript	678957	683285	.	-	.	seqedit=false;p_id=P6675;gene_id=YJR137C;tss_id=TSS1119;nbOverlaps=0;ID=YJR137C;Name=MET5
XVI	S-MART	transcript	583062	584042	.	-	.	seqedit=false;p_id=P1990;gene_id=YPR011C;tss_id=TSS1690;nbOverlaps=0;ID=YPR011C;Name=YPR011C
X	S-MART	transcript	684567	689321	.	+	.	seqedit=false;p_id=P4146;gene_id=YJR138W;tss_id=TSS4583;nbOverlaps=0;ID=YJR138W;Name=IML1
X	S-MART	transcript	689445	690524	.	-	.	seqedit=false;p_id=P3352;gene_id=YJR139C;tss_id=TSS2343;nbOverlaps=0;ID=YJR139C;Name=HOM6
X	S-MART	transcript	690750	695696	.	-	.	seqedit=false;p_id=P4324;gene_id=YJR140C;tss_id=TSS837;nbOverlaps=0;ID=YJR140C;Name=HIR3
X	S-MART	transcript	690961	691110	.	+	.	seqedit=false;p_id=P132;gene_id=YJR140W-A;tss_id=TSS5038;nbOverlaps=0;ID=YJR140W-A;Name=YJR140W-A
X	S-MART	transcript	698326	700614	.	-	.	seqedit=false;p_id=P6083;gene_id=YJR143C;tss_id=TSS3599;nbOverlaps=0;ID=YJR143C;Name=PMT4
X	S-MART	transcript	695906	696949	.	+	.	seqedit=false;p_id=P4446;gene_id=YJR141W;tss_id=TSS6887;nbOverlaps=0;ID=YJR141W;Name=YJR141W
X	S-MART	transcript	697141	698169	.	+	.	seqedit=false;p_id=P1578;gene_id=YJR142W;tss_id=TSS1905;nbOverlaps=0;ID=YJR142W;Name=YJR142W
X	S-MART	transcript	700882	701691	.	+	.	seqedit=false;p_id=P4011;gene_id=YJR144W;tss_id=TSS4895;nbOverlaps=0;ID=YJR144W;Name=MGM101
X	S-MART	transcript	702027	703068	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:12562:2640#0--HWUSI-EAS1656_0009_FC:3:102:5967:4772#0--HWUSI-EAS1656_0009;p_id=P4373;gene_id=YJR145C;tss_id=TSS1514;nbOverlaps=4968;ID=YJR145C;Name=RPS4A
X	S-MART	exon	702027	702798	.	-	.	ID=YJR145C-exon1;Name=RPS4A-exon1;Parent=YJR145C
X	S-MART	exon	703055	703068	.	-	.	ID=YJR145C-exon2;Name=RPS4A-exon2;Parent=YJR145C
X	S-MART	transcript	704196	705272	.	+	.	seqedit=false;p_id=P558;gene_id=YJR147W;tss_id=TSS6655;nbOverlaps=0;ID=YJR147W;Name=HMS2
X	S-MART	transcript	703885	704238	.	+	.	seqedit=false;p_id=P4261;gene_id=YJR146W;tss_id=TSS1064;nbOverlaps=0;ID=YJR146W;Name=YJR146W
X	S-MART	transcript	705744	706874	.	+	.	seqedit=false;p_id=P4714;gene_id=YJR148W;tss_id=TSS6707;nbOverlaps=0;ID=YJR148W;Name=BAT2
X	S-MART	transcript	708811	709707	.	-	.	seqedit=false;p_id=P1476;gene_id=YJR150C;tss_id=TSS5363;nbOverlaps=0;ID=YJR150C;Name=DAN1
XVI	S-MART	transcript	316755	317516	.	+	.	seqedit=false;p_id=P838;gene_id=YPL124W;tss_id=TSS3669;nbOverlaps=0;ID=YPL124W;Name=SPC29
X	S-MART	transcript	707160	708374	.	+	.	seqedit=false;p_id=P1428;gene_id=YJR149W;tss_id=TSS297;nbOverlaps=0;ID=YJR149W;Name=YJR149W
X	S-MART	transcript	712255	715740	.	-	.	seqedit=false;p_id=P4855;gene_id=YJR151C;tss_id=TSS3199;nbOverlaps=0;ID=YJR151C;Name=DAN4
X	S-MART	transcript	717580	717630	.	+	.	seqedit=false;p_id=P5253;gene_id=YJR151W-A;tss_id=TSS6402;nbOverlaps=0;ID=YJR151W-A;Name=YJR151W-A
X	S-MART	transcript	719666	721297	.	+	.	seqedit=false;p_id=P5592;gene_id=YJR152W;tss_id=TSS1781;nbOverlaps=0;ID=YJR152W;Name=DAL5
X	S-MART	transcript	722815	723900	.	+	.	seqedit=false;p_id=P5910;gene_id=YJR153W;tss_id=TSS2340;nbOverlaps=0;ID=YJR153W;Name=PGU1
X	S-MART	transcript	727405	728271	.	+	.	seqedit=false;p_id=P1538;gene_id=YJR155W;tss_id=TSS5025;nbOverlaps=0;ID=YJR155W;Name=AAD10
X	S-MART	transcript	725784	726824	.	+	.	seqedit=false;p_id=P5412;gene_id=YJR154W;tss_id=TSS4919;nbOverlaps=0;ID=YJR154W;Name=YJR154W
X	S-MART	transcript	728574	729596	.	-	.	seqedit=false;p_id=P6583;gene_id=YJR156C;tss_id=TSS470;nbOverlaps=0;ID=YJR156C;Name=THI11
X	S-MART	transcript	732440	734143	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:3921:11814#0--HWUSI-EAS1656_0009_FC:3:49:17464:5461#0--HWUSI-EAS1656_0009;p_id=P5025;gene_id=YJR158W;tss_id=TSS6516;nbOverlaps=3;ID=YJR158W;Name=HXT16
X	S-MART	transcript	730515	730877	.	+	.	seqedit=false;p_id=P6057;gene_id=YJR157W;tss_id=TSS6349;nbOverlaps=0;ID=YJR157W;Name=YJR157W
X	S-MART	transcript	736044	737117	.	+	.	seqedit=false;p_id=P5218;gene_id=YJR159W;tss_id=TSS4373;nbOverlaps=0;ID=YJR159W;Name=SOR1
X	S-MART	transcript	738008	739816	.	-	.	seqedit=false;p_id=P904;gene_id=YJR160C;tss_id=TSS4835;nbOverlaps=0;ID=YJR160C;Name=MPH3
X	S-MART	transcript	742848	743999	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:6411:16379#0--HWUSI-EAS1656_0009_FC:3:79:10015:12707#0--HWUSI-EAS1656_000;p_id=P977;gene_id=YJR161C;tss_id=TSS1728;nbOverlaps=3;ID=YJR161C;Name=COS5
XI	S-MART	transcript	438777	439385	.	-	.	seqedit=false;p_id=P3657;gene_id=YKL001C;tss_id=TSS5;nbOverlaps=0;ID=YKL001C;Name=MET14
X	S-MART	transcript	744911	745261	.	-	.	seqedit=false;p_id=P5761;gene_id=YJR162C;tss_id=TSS6113;nbOverlaps=0;ID=YJR162C;Name=YJR162C
XVI	S-MART	transcript	584309	584563	.	+	.	seqedit=false;p_id=P3597;gene_id=YPR012W;tss_id=TSS502;nbOverlaps=0;ID=YPR012W;Name=YPR012W
XI	S-MART	transcript	437778	438544	.	+	.	seqedit=false;p_id=P1690;gene_id=YKL002W;tss_id=TSS6673;nbOverlaps=0;ID=YKL002W;Name=DID4
XI	S-MART	exon	437778	437837	.	+	.	ID=YKL002W-exon1;Name=DID4-exon1;Parent=YKL002W
XI	S-MART	exon	437906	438544	.	+	.	ID=YKL002W-exon2;Name=DID4-exon2;Parent=YKL002W
XI	S-MART	transcript	437097	437492	.	-	.	seqedit=false;p_id=P2302;gene_id=YKL003C;tss_id=TSS708;nbOverlaps=0;ID=YKL003C;Name=MRP17
XI	S-MART	transcript	435580	436785	.	+	.	seqedit=false;p_id=P3618;gene_id=YKL004W;tss_id=TSS5734;nbOverlaps=0;ID=YKL004W;Name=AUR1
XI	S-MART	transcript	433093	434877	.	-	.	seqedit=false;p_id=P1954;gene_id=YKL005C;tss_id=TSS5848;nbOverlaps=0;ID=YKL005C;Name=BYE1
XI	S-MART	transcript	430198	430632	.	-	.	seqedit=false;p_id=P1965;gene_id=YKL006C-A;tss_id=TSS1140;nbOverlaps=0;ID=YKL006C-A;Name=SFT1
XI	S-MART	exon	430198	430455	.	-	.	ID=YKL006C-A-exon1;Name=SFT1-exon1;Parent=YKL006C-A
XI	S-MART	exon	430597	430632	.	-	.	ID=YKL006C-A-exon2;Name=SFT1-exon2;Parent=YKL006C-A
XI	S-MART	transcript	431906	432720	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:15319:21062#0--HWUSI-EAS1656_0009_FC:3:112:14471:19036#0--HWUSI-EAS1656_0;p_id=P1479;gene_id=YKL006W;tss_id=TSS2210;nbOverlaps=3697;ID=YKL006W;Name=RPL14A
XI	S-MART	exon	431906	432034	.	+	.	ID=YKL006W-exon1;Name=RPL14A-exon1;Parent=YKL006W
XI	S-MART	exon	432433	432720	.	+	.	ID=YKL006W-exon2;Name=RPL14A-exon2;Parent=YKL006W
XI	S-MART	transcript	429302	430108	.	+	.	seqedit=false;p_id=P5469;gene_id=YKL007W;tss_id=TSS5721;nbOverlaps=0;ID=YKL007W;Name=CAP1
XI	S-MART	transcript	427295	428551	.	-	.	seqedit=false;p_id=P506;gene_id=YKL008C;tss_id=TSS6071;nbOverlaps=0;ID=YKL008C;Name=LAC1
XI	S-MART	transcript	426242	426952	.	+	.	seqedit=false;p_id=P843;gene_id=YKL009W;tss_id=TSS5385;nbOverlaps=0;ID=YKL009W;Name=MRT4
XVI	S-MART	transcript	313388	316486	.	+	.	seqedit=false;p_id=P5390;gene_id=YPL125W;tss_id=TSS1387;nbOverlaps=0;ID=YPL125W;Name=KAP120
XI	S-MART	transcript	421424	425875	.	-	.	seqedit=false;p_id=P1046;gene_id=YKL010C;tss_id=TSS6505;nbOverlaps=0;ID=YKL010C;Name=UFD4
VII	S-MART	transcript	589826	590911	.	+	.	seqedit=false;p_id=P4884;gene_id=YGR048W;tss_id=TSS4401;nbOverlaps=0;ID=YGR048W;Name=UFD1
VII	S-MART	transcript	591314	591877	.	+	.	seqedit=false;p_id=P5057;gene_id=YGR049W;tss_id=TSS5148;nbOverlaps=0;ID=YGR049W;Name=SCM4
VII	S-MART	transcript	593596	594705	.	+	.	seqedit=false;p_id=P5403;gene_id=YGR052W;tss_id=TSS4829;nbOverlaps=0;ID=YGR052W;Name=FMP48
VII	S-MART	transcript	592086	592442	.	-	.	seqedit=false;p_id=P4435;gene_id=YGR050C;tss_id=TSS4596;nbOverlaps=0;ID=YGR050C;Name=YGR050C
VII	S-MART	transcript	592906	593229	.	-	.	seqedit=false;p_id=P6528;gene_id=YGR051C;tss_id=TSS1853;nbOverlaps=0;ID=YGR051C;Name=YGR051C
VII	S-MART	transcript	599417	601141	.	+	.	seqedit=false;p_id=P5223;gene_id=YGR055W;tss_id=TSS6961;nbOverlaps=0;ID=YGR055W;Name=MUP1
VII	S-MART	transcript	594986	595837	.	-	.	seqedit=false;p_id=P3077;gene_id=YGR053C;tss_id=TSS4830;nbOverlaps=0;ID=YGR053C;Name=YGR053C
VII	S-MART	transcript	596693	598621	.	+	.	seqedit=false;p_id=P584;gene_id=YGR054W;tss_id=TSS3294;nbOverlaps=0;ID=YGR054W;Name=YGR054W
VII	S-MART	transcript	601661	604447	.	+	.	seqedit=false;p_id=P3581;gene_id=YGR056W;tss_id=TSS4620;nbOverlaps=0;ID=YGR056W;Name=RSC1
VII	S-MART	transcript	604773	605501	.	-	.	seqedit=false;p_id=P4987;gene_id=YGR057C;tss_id=TSS158;nbOverlaps=0;ID=YGR057C;Name=LST7
VII	S-MART	transcript	606136	607143	.	+	.	seqedit=false;p_id=P4333;gene_id=YGR058W;tss_id=TSS5971;nbOverlaps=0;ID=YGR058W;Name=PEF1
VII	S-MART	transcript	607563	609101	.	+	.	seqedit=false;p_id=P323;gene_id=YGR059W;tss_id=TSS3820;nbOverlaps=0;ID=YGR059W;Name=SPR3
VII	S-MART	transcript	610564	611493	.	+	.	seqedit=false;p_id=P2234;gene_id=YGR060W;tss_id=TSS2630;nbOverlaps=0;ID=YGR060W;Name=ERG25
XVI	S-MART	transcript	584632	585585	.	-	.	seqedit=false;p_id=P2674;gene_id=YPR013C;tss_id=TSS3812;nbOverlaps=0;ID=YPR013C;Name=YPR013C
VII	S-MART	transcript	611889	615965	.	-	.	seqedit=false;p_id=P555;gene_id=YGR061C;tss_id=TSS1485;nbOverlaps=0;ID=YGR061C;Name=ADE6
VII	S-MART	transcript	616328	617278	.	-	.	seqedit=false;p_id=P4840;gene_id=YGR062C;tss_id=TSS4892;nbOverlaps=0;ID=YGR062C;Name=COX18
VII	S-MART	transcript	617516	617824	.	-	.	seqedit=false;p_id=P4438;gene_id=YGR063C;tss_id=TSS6275;nbOverlaps=0;ID=YGR063C;Name=SPT4
VII	S-MART	transcript	618077	619858	.	-	.	seqedit=false;p_id=P3059;gene_id=YGR065C;tss_id=TSS2880;nbOverlaps=0;ID=YGR065C;Name=VHT1
VII	S-MART	transcript	617621	617989	.	+	.	seqedit=false;p_id=P4953;gene_id=YGR064W;tss_id=TSS3006;nbOverlaps=0;ID=YGR064W;Name=YGR064W
VII	S-MART	transcript	625324	627084	.	-	.	seqedit=false;p_id=P2227;gene_id=YGR068C;tss_id=TSS4997;nbOverlaps=0;ID=YGR068C;Name=ART5
VII	S-MART	transcript	620921	621799	.	-	.	seqedit=false;p_id=P474;gene_id=YGR066C;tss_id=TSS4205;nbOverlaps=0;ID=YGR066C;Name=YGR066C
VII	S-MART	transcript	622372	624786	.	-	.	seqedit=false;p_id=P387;gene_id=YGR067C;tss_id=TSS5071;nbOverlaps=0;ID=YGR067C;Name=YGR067C
VII	S-MART	transcript	626294	626389	.	+	.	seqedit=false;p_id=P4702;gene_id=YGR068W-A;tss_id=TSS2476;nbOverlaps=0;ID=YGR068W-A;Name=YGR068W-A
VII	S-MART	transcript	627806	631273	.	+	.	seqedit=false;p_id=P2436;gene_id=YGR070W;tss_id=TSS727;nbOverlaps=0;ID=YGR070W;Name=ROM1
VII	S-MART	transcript	627083	627418	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:6088:19860#0--HWUSI-EAS1656_0009_FC:3:75:8552:17968#0--HWUSI-EAS1656_0009;p_id=P2789;gene_id=YGR069W;tss_id=TSS1605;nbOverlaps=5;ID=YGR069W;Name=YGR069W
VII	S-MART	transcript	631481	634063	.	-	.	seqedit=false;p_id=P5759;gene_id=YGR071C;tss_id=TSS887;nbOverlaps=0;ID=YGR071C;Name=ENV11
VII	S-MART	transcript	634304	635467	.	+	.	seqedit=false;p_id=P5082;gene_id=YGR072W;tss_id=TSS3016;nbOverlaps=0;ID=YGR072W;Name=UPF3
VII	S-MART	transcript	635712	636152	.	+	.	seqedit=false;p_id=P2766;gene_id=YGR074W;tss_id=TSS2151;nbOverlaps=0;ID=YGR074W;Name=SMD1
VII	S-MART	transcript	635615	635986	.	-	.	seqedit=false;p_id=P2271;gene_id=YGR073C;tss_id=TSS1577;nbOverlaps=0;ID=YGR073C;Name=YGR073C
VII	S-MART	transcript	636147	636875	.	-	.	seqedit=false;p_id=P2765;gene_id=YGR075C;tss_id=TSS4391;nbOverlaps=0;ID=YGR075C;Name=PRP38
VII	S-MART	transcript	637104	637577	.	-	.	seqedit=false;p_id=P1443;gene_id=YGR076C;tss_id=TSS4675;nbOverlaps=0;ID=YGR076C;Name=MRPL25
VII	S-MART	transcript	637744	639513	.	-	.	seqedit=false;p_id=P1872;gene_id=YGR077C;tss_id=TSS7049;nbOverlaps=0;ID=YGR077C;Name=PEX8
VII	S-MART	transcript	639772	640371	.	-	.	seqedit=false;p_id=P3063;gene_id=YGR078C;tss_id=TSS1645;nbOverlaps=0;ID=YGR078C;Name=PAC10
VII	S-MART	transcript	642010	643008	.	+	.	seqedit=false;p_id=P5316;gene_id=YGR080W;tss_id=TSS871;nbOverlaps=0;ID=YGR080W;Name=TWF1
VII	S-MART	transcript	640720	641832	.	+	.	seqedit=false;p_id=P2312;gene_id=YGR079W;tss_id=TSS4987;nbOverlaps=0;ID=YGR079W;Name=YGR079W
VII	S-MART	transcript	643148	643780	.	-	.	seqedit=false;p_id=P5753;gene_id=YGR081C;tss_id=TSS330;nbOverlaps=0;ID=YGR081C;Name=SLX9
VII	S-MART	transcript	644044	644595	.	+	.	seqedit=false;p_id=P4940;gene_id=YGR082W;tss_id=TSS3699;nbOverlaps=0;ID=YGR082W;Name=TOM20
VII	S-MART	transcript	644860	646815	.	-	.	seqedit=false;p_id=P3108;gene_id=YGR083C;tss_id=TSS3019;nbOverlaps=0;ID=YGR083C;Name=GCD2
VII	S-MART	transcript	647123	648142	.	-	.	seqedit=false;p_id=P560;gene_id=YGR084C;tss_id=TSS3075;nbOverlaps=0;ID=YGR084C;Name=MRP13
VII	S-MART	transcript	648383	648907	.	-	.	seqedit=false;p_id=P855;gene_id=YGR085C;tss_id=TSS4564;nbOverlaps=0;ID=YGR085C;Name=RPL11B
XIII	S-MART	transcript	561956	562528	.	-	.	seqedit=false;p_id=P4928;gene_id=YMR150C;tss_id=TSS4286;nbOverlaps=0;ID=YMR150C;Name=IMP1
VII	S-MART	transcript	651290	652981	.	-	.	seqedit=false;p_id=P897;gene_id=YGR087C;tss_id=TSS3608;nbOverlaps=0;ID=YGR087C;Name=PDC6
VII	S-MART	transcript	654634	656322	.	+	.	seqedit=false;p_id=P3816;gene_id=YGR088W;tss_id=TSS1463;nbOverlaps=0;ID=YGR088W;Name=CTT1
VII	S-MART	transcript	656960	659770	.	+	.	seqedit=false;p_id=P6559;gene_id=YGR089W;tss_id=TSS4818;nbOverlaps=0;ID=YGR089W;Name=NNF2
XVI	S-MART	transcript	587189	587518	.	-	.	seqedit=false;p_id=P5654;gene_id=YPR014C;tss_id=TSS5678;nbOverlaps=0;ID=YPR014C;Name=YPR014C
VII	S-MART	transcript	662358	666071	.	+	.	seqedit=false;p_id=P1487;gene_id=YGR090W;tss_id=TSS6381;nbOverlaps=0;ID=YGR090W;Name=UTP22
VII	S-MART	transcript	666341	667825	.	+	.	seqedit=false;p_id=P5971;gene_id=YGR091W;tss_id=TSS6926;nbOverlaps=0;ID=YGR091W;Name=PRP31
VII	S-MART	transcript	668189	669907	.	+	.	seqedit=false;p_id=P5934;gene_id=YGR092W;tss_id=TSS4178;nbOverlaps=0;ID=YGR092W;Name=DBF2
VII	S-MART	transcript	672186	675500	.	+	.	seqedit=false;p_id=P6646;gene_id=YGR094W;tss_id=TSS1008;nbOverlaps=0;ID=YGR094W;Name=VAS1
VII	S-MART	transcript	670388	671911	.	+	.	seqedit=false;p_id=P4007;gene_id=YGR093W;tss_id=TSS6869;nbOverlaps=0;ID=YGR093W;Name=YGR093W
VII	S-MART	transcript	675671	676342	.	-	.	seqedit=false;p_id=P653;gene_id=YGR095C;tss_id=TSS6826;nbOverlaps=0;ID=YGR095C;Name=RRP46
VII	S-MART	transcript	676621	677565	.	+	.	seqedit=false;p_id=P213;gene_id=YGR096W;tss_id=TSS7059;nbOverlaps=0;ID=YGR096W;Name=TPC1
VII	S-MART	transcript	678695	682135	.	+	.	seqedit=false;p_id=P714;gene_id=YGR097W;tss_id=TSS4319;nbOverlaps=0;ID=YGR097W;Name=ASK10
VII	S-MART	transcript	682566	687458	.	-	.	seqedit=false;p_id=P2443;gene_id=YGR098C;tss_id=TSS4925;nbOverlaps=0;ID=YGR098C;Name=ESP1
VII	S-MART	transcript	687899	689965	.	+	.	seqedit=false;p_id=P196;gene_id=YGR099W;tss_id=TSS286;nbOverlaps=0;ID=YGR099W;Name=TEL2
VII	S-MART	transcript	690245	693097	.	+	.	seqedit=false;p_id=P4957;gene_id=YGR100W;tss_id=TSS3465;nbOverlaps=0;ID=YGR100W;Name=MDR1
VII	S-MART	transcript	693363	694403	.	+	.	seqedit=false;p_id=P3159;gene_id=YGR101W;tss_id=TSS4359;nbOverlaps=0;ID=YGR101W;Name=PCP1
X	S-MART	transcript	466521	467033	.	-	.	seqedit=false;p_id=P1051;gene_id=YJR017C;tss_id=TSS7066;nbOverlaps=0;ID=YJR017C;Name=ESS1
VII	S-MART	transcript	694584	695135	.	-	.	seqedit=false;p_id=P1598;gene_id=YGR102C;tss_id=TSS2350;nbOverlaps=0;ID=YGR102C;Name=GTF1
VII	S-MART	transcript	695417	697234	.	+	.	seqedit=false;p_id=P4100;gene_id=YGR103W;tss_id=TSS3878;nbOverlaps=0;ID=YGR103W;Name=NOP7
VII	S-MART	transcript	697445	698368	.	-	.	seqedit=false;p_id=P5711;gene_id=YGR104C;tss_id=TSS4508;nbOverlaps=0;ID=YGR104C;Name=SRB5
VII	S-MART	transcript	698599	698832	.	+	.	seqedit=false;p_id=P4214;gene_id=YGR105W;tss_id=TSS5653;nbOverlaps=0;ID=YGR105W;Name=VMA21
VII	S-MART	transcript	698989	699786	.	-	.	seqedit=false;p_id=P5452;gene_id=YGR106C;tss_id=TSS1214;nbOverlaps=0;ID=YGR106C;Name=VOA1
VII	S-MART	transcript	703636	705051	.	+	.	seqedit=false;p_id=P1435;gene_id=YGR108W;tss_id=TSS769;nbOverlaps=0;ID=YGR108W;Name=CLB1
VII	S-MART	transcript	702667	703116	.	+	.	seqedit=false;p_id=P5723;gene_id=YGR107W;tss_id=TSS4920;nbOverlaps=0;ID=YGR107W;Name=YGR107W
VII	S-MART	transcript	705359	706501	.	-	.	seqedit=false;p_id=P586;gene_id=YGR109C;tss_id=TSS6583;nbOverlaps=0;ID=YGR109C;Name=CLB6
XVI	S-MART	transcript	590283	591026	.	-	.	seqedit=false;p_id=P3914;gene_id=YPR015C;tss_id=TSS6657;nbOverlaps=0;ID=YPR015C;Name=YPR015C
XVI	S-MART	transcript	306533	308221	.	-	.	seqedit=false;p_id=P4204;gene_id=YPL128C;tss_id=TSS240;nbOverlaps=0;ID=YPL128C;Name=TBF1
XV	S-MART	transcript	602717	605092	.	-	.	seqedit=false;p_id=P3851;gene_id=YOR144C;tss_id=TSS4104;nbOverlaps=0;ID=YOR144C;Name=ELG1
XVI	S-MART	transcript	593096	593356	.	+	.	seqedit=false;p_id=P4158;gene_id=YPR016W-A;tss_id=TSS4759;nbOverlaps=0;ID=YPR016W-A;Name=YPR016W-A
XVI	S-MART	transcript	305298	306137	.	+	.	seqedit=false;p_id=P198;gene_id=YPL129W;tss_id=TSS721;nbOverlaps=0;ID=YPL129W;Name=TAF14
XVI	S-MART	exon	305298	305306	.	+	.	ID=YPL129W-exon1;Name=TAF14-exon1;Parent=YPL129W
XVI	S-MART	exon	305412	306137	.	+	.	ID=YPL129W-exon2;Name=TAF14-exon2;Parent=YPL129W
XIII	S-MART	transcript	253162	253272	.	-	.	seqedit=false;p_id=P3901;gene_id=YML007C-A;tss_id=TSS5351;nbOverlaps=0;ID=YML007C-A;Name=YML007C-A
XV	S-MART	transcript	605347	606171	.	-	.	seqedit=false;p_id=P5363;gene_id=YOR145C;tss_id=TSS6249;nbOverlaps=0;ID=YOR145C;Name=PNO1
XIII	S-MART	transcript	253848	255800	.	+	.	seqedit=false;p_id=P11;gene_id=YML007W;tss_id=TSS1874;nbOverlaps=0;ID=YML007W;Name=YAP1
XIII	S-MART	transcript	251839	252990	.	-	.	seqedit=false;p_id=P3235;gene_id=YML008C;tss_id=TSS4753;nbOverlaps=0;ID=YML008C;Name=ERG6
XIII	S-MART	transcript	251304	251516	.	-	.	seqedit=false;p_id=P533;gene_id=YML009C;tss_id=TSS6184;nbOverlaps=0;ID=YML009C;Name=MRPL39
XIII	S-MART	transcript	250675	251001	.	-	.	seqedit=false;p_id=P6302;gene_id=YML009C-A;tss_id=TSS5521;nbOverlaps=0;ID=YML009C-A;Name=YML009C-A
XVI	S-MART	transcript	593486	593917	.	-	.	seqedit=false;p_id=P6410;gene_id=YPR017C;tss_id=TSS5899;nbOverlaps=0;ID=YPR017C;Name=DSS4
XIII	S-MART	transcript	250435	250911	.	+	.	seqedit=false;p_id=P14;gene_id=YML009W-B;tss_id=TSS1799;nbOverlaps=0;ID=YML009W-B;Name=YML009W-B
XIII	S-MART	transcript	247677	250868	.	+	.	seqedit=false;p_id=P5596;gene_id=YML010W;tss_id=TSS1023;nbOverlaps=0;ID=YML010W;Name=SPT5
XIII	S-MART	transcript	246895	247428	.	-	.	seqedit=false;p_id=P3037;gene_id=YML011C;tss_id=TSS4192;nbOverlaps=0;ID=YML011C;Name=RAD33
XIII	S-MART	transcript	245537	245914	.	-	.	seqedit=false;p_id=P3348;gene_id=YML012C-A;tss_id=TSS1236;nbOverlaps=0;ID=YML012C-A;Name=YML012C-A
XIII	S-MART	transcript	246116	246751	.	+	.	seqedit=false;p_id=P3701;gene_id=YML012W;tss_id=TSS3459;nbOverlaps=0;ID=YML012W;Name=ERV25
XIII	S-MART	transcript	244149	245903	.	+	.	seqedit=false;p_id=P5458;gene_id=YML013W;tss_id=TSS4022;nbOverlaps=0;ID=YML013W;Name=UBX2
XIII	S-MART	transcript	243225	244064	.	+	.	seqedit=false;p_id=P3968;gene_id=YML014W;tss_id=TSS2797;nbOverlaps=0;ID=YML014W;Name=TRM9
XIII	S-MART	transcript	241989	243029	.	-	.	seqedit=false;p_id=P1504;gene_id=YML015C;tss_id=TSS3524;nbOverlaps=0;ID=YML015C;Name=TAF11
XIII	S-MART	transcript	239458	241536	.	-	.	seqedit=false;p_id=P4106;gene_id=YML016C;tss_id=TSS3605;nbOverlaps=0;ID=YML016C;Name=PPZ1
XIII	S-MART	transcript	236588	238731	.	+	.	seqedit=false;p_id=P3888;gene_id=YML017W;tss_id=TSS2480;nbOverlaps=0;ID=YML017W;Name=PSP2
XIII	S-MART	exon	236588	236591	.	+	.	ID=YML017W-exon1;Name=PSP2-exon1;Parent=YML017W
XIII	S-MART	exon	236954	238731	.	+	.	ID=YML017W-exon2;Name=PSP2-exon2;Parent=YML017W
XIII	S-MART	transcript	233457	234455	.	+	.	seqedit=false;p_id=P4695;gene_id=YML019W;tss_id=TSS3403;nbOverlaps=0;ID=YML019W;Name=OST6
XIII	S-MART	transcript	234771	235952	.	-	.	seqedit=false;p_id=P1832;gene_id=YML018C;tss_id=TSS5318;nbOverlaps=0;ID=YML018C;Name=YML018C
XIII	S-MART	transcript	229734	230813	.	-	.	seqedit=false;p_id=P1446;gene_id=YML021C;tss_id=TSS1855;nbOverlaps=0;ID=YML021C;Name=UNG1
XIII	S-MART	transcript	231149	233143	.	+	.	seqedit=false;p_id=P5970;gene_id=YML020W;tss_id=TSS6577;nbOverlaps=0;ID=YML020W;Name=YML020W
XIII	S-MART	transcript	228937	229500	.	+	.	seqedit=false;p_id=P1796;gene_id=YML022W;tss_id=TSS4150;nbOverlaps=0;ID=YML022W;Name=APT1
XIII	S-MART	transcript	226994	228664	.	-	.	seqedit=false;p_id=P6626;gene_id=YML023C;tss_id=TSS599;nbOverlaps=0;ID=YML023C;Name=NSE5
IX	S-MART	transcript	403659	404765	.	+	.	seqedit=false;p_id=P4180;gene_id=YIR025W;tss_id=TSS6123;nbOverlaps=0;ID=YIR025W;Name=MND2
XIII	S-MART	transcript	225889	226697	.	+	.	seqedit=false;p_id=P6647;gene_id=YML024W;tss_id=TSS4133;nbOverlaps=0;ID=YML024W;Name=RPS17A
XIII	S-MART	exon	225889	225891	.	+	.	ID=YML024W-exon1;Name=RPS17A-exon1;Parent=YML024W
XIII	S-MART	exon	226290	226697	.	+	.	ID=YML024W-exon2;Name=RPS17A-exon2;Parent=YML024W
XIII	S-MART	transcript	224406	225365	.	-	.	seqedit=false;p_id=P2159;gene_id=YML025C;tss_id=TSS6768;nbOverlaps=0;ID=YML025C;Name=YML6
XIII	S-MART	exon	224406	225239	.	-	.	ID=YML025C-exon1;Name=YML6-exon1;Parent=YML025C
XIII	S-MART	exon	225339	225365	.	-	.	ID=YML025C-exon2;Name=YML6-exon2;Parent=YML025C
XIII	S-MART	transcript	222987	223828	.	-	.	seqedit=false;p_id=P3761;gene_id=YML026C;tss_id=TSS1327;nbOverlaps=0;ID=YML026C;Name=RPS18B
XIII	S-MART	exon	222987	223380	.	-	.	ID=YML026C-exon1;Name=RPS18B-exon1;Parent=YML026C
XIII	S-MART	exon	223782	223828	.	-	.	ID=YML026C-exon2;Name=RPS18B-exon2;Parent=YML026C
XV	S-MART	transcript	606607	608475	.	+	.	seqedit=false;p_id=P5696;gene_id=YOR147W;tss_id=TSS278;nbOverlaps=0;ID=YOR147W;Name=MDM32
XIII	S-MART	transcript	221406	222563	.	+	.	seqedit=false;p_id=P2406;gene_id=YML027W;tss_id=TSS541;nbOverlaps=0;ID=YML027W;Name=YOX1
XIII	S-MART	transcript	220138	220728	.	+	.	seqedit=false;p_id=P2834;gene_id=YML028W;tss_id=TSS4079;nbOverlaps=0;ID=YML028W;Name=TSA1
XIII	S-MART	transcript	217362	219878	.	+	.	seqedit=false;p_id=P227;gene_id=YML029W;tss_id=TSS3718;nbOverlaps=0;ID=YML029W;Name=USA1
XVI	S-MART	transcript	594476	596296	.	+	.	seqedit=false;p_id=P3566;gene_id=YPR018W;tss_id=TSS1302;nbOverlaps=0;ID=YPR018W;Name=RLF2
XIII	S-MART	transcript	216435	216914	.	+	.	seqedit=false;p_id=P2351;gene_id=YML030W;tss_id=TSS1777;nbOverlaps=0;ID=YML030W;Name=AIM31
XIII	S-MART	transcript	214086	214421	.	-	.	seqedit=false;p_id=P3231;gene_id=YML031C-A;tss_id=TSS1241;nbOverlaps=0;ID=YML031C-A;Name=YML031C-A
XIII	S-MART	transcript	214189	216156	.	+	.	seqedit=false;p_id=P1805;gene_id=YML031W;tss_id=TSS4881;nbOverlaps=0;ID=YML031W;Name=NDC1
XIII	S-MART	transcript	212515	213930	.	-	.	seqedit=false;p_id=P2108;gene_id=YML032C;tss_id=TSS5506;nbOverlaps=0;ID=YML032C;Name=RAD52
XIII	S-MART	transcript	209428	209826	.	-	.	seqedit=false;p_id=P3054;gene_id=YML034C-A;tss_id=TSS2298;nbOverlaps=0;ID=YML034C-A;Name=YML034C-A
XIII	S-MART	transcript	209525	212155	.	+	.	seqedit=false;p_id=P3731;gene_id=YML034W;tss_id=TSS1600;nbOverlaps=0;ID=YML034W;Name=SRC1
XIII	S-MART	exon	209525	211444	.	+	.	ID=YML034W-exon1;Name=SRC1-exon1;Parent=YML034W
XIII	S-MART	exon	211571	212155	.	+	.	ID=YML034W-exon2;Name=SRC1-exon2;Parent=YML034W
XIII	S-MART	transcript	206428	208860	.	-	.	seqedit=false;p_id=P3925;gene_id=YML035C;tss_id=TSS3245;nbOverlaps=0;ID=YML035C;Name=AMD1
XIII	S-MART	transcript	205642	206293	.	+	.	seqedit=false;p_id=P388;gene_id=YML036W;tss_id=TSS4752;nbOverlaps=0;ID=YML036W;Name=CGI121
XIII	S-MART	exon	205642	206097	.	+	.	ID=YML036W-exon1;Name=CGI121-exon1;Parent=YML036W
XIII	S-MART	exon	206204	206293	.	+	.	ID=YML036W-exon2;Name=CGI121-exon2;Parent=YML036W
XIII	S-MART	transcript	202775	204103	.	-	.	seqedit=false;p_id=P1903;gene_id=YML038C;tss_id=TSS5056;nbOverlaps=0;ID=YML038C;Name=YMD8
XIII	S-MART	transcript	204386	205408	.	-	.	seqedit=false;p_id=P2314;gene_id=YML037C;tss_id=TSS6680;nbOverlaps=0;ID=YML037C;Name=YML037C
XIII	S-MART	transcript	194913	195755	.	-	.	seqedit=false;p_id=P1678;gene_id=YML041C;tss_id=TSS6848;nbOverlaps=0;ID=YML041C;Name=VPS71
XIII	S-MART	transcript	196628	201896	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:10819:20066#0--HWUSI-EAS1656_0009_FC:3:27:8710:20300#0--HWUSI-EAS1656_000;p_id=P4177;gene_id=YML039W;tss_id=TSS476;nbOverlaps=103;ID=YML039W;Name=YML039W
XIII	S-MART	exon	196628	197932	.	+	.	ID=YML039W-exon1;Name=YML039W-exon1;Parent=YML039W
XIII	S-MART	exon	197934	201896	.	+	.	ID=YML039W-exon2;Name=YML039W-exon2;Parent=YML039W
IX	S-MART	transcript	402841	403491	.	-	.	seqedit=false;p_id=P2757;gene_id=YIR024C;tss_id=TSS1458;nbOverlaps=0;ID=YIR024C;Name=YIR024C
XIII	S-MART	transcript	196628	197950	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P5812;gene_id=YML040W;tss_id=TSS476;nbOverlaps=22;ID=YML040W;Name=YML040W
XIII	S-MART	transcript	192788	194800	.	+	.	seqedit=false;p_id=P5198;gene_id=YML042W;tss_id=TSS3315;nbOverlaps=0;ID=YML042W;Name=CAT2
XIII	S-MART	transcript	190244	191767	.	-	.	seqedit=false;p_id=P4801;gene_id=YML043C;tss_id=TSS6340;nbOverlaps=0;ID=YML043C;Name=RRN11
XIII	S-MART	transcript	184461	185783	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P4899;gene_id=YML045W-A;tss_id=TSS5349;nbOverlaps=10;ID=YML045W-A;Name=YML045W-A
XIII	S-MART	transcript	184461	189729	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:6147:6142#0--HWUSI-EAS1656_0009_FC:3:61:17569:13684#0--HWUSI-EAS1656_0009;p_id=P3039;gene_id=YML045W;tss_id=TSS5349;nbOverlaps=323;ID=YML045W;Name=YML045W
XIII	S-MART	exon	184461	185765	.	+	.	ID=YML045W-exon1;Name=YML045W-exon1;Parent=YML045W
XIII	S-MART	exon	185767	189729	.	+	.	ID=YML045W-exon2;Name=YML045W-exon2;Parent=YML045W
XIII	S-MART	transcript	181474	183363	.	+	.	seqedit=false;p_id=P6236;gene_id=YML046W;tss_id=TSS5353;nbOverlaps=0;ID=YML046W;Name=PRP39
XV	S-MART	transcript	605873	606178	.	+	.	seqedit=false;p_id=P4759;gene_id=YOR146W;tss_id=TSS6739;nbOverlaps=0;ID=YOR146W;Name=YOR146W
XIII	S-MART	transcript	180017	181075	.	-	.	seqedit=false;p_id=P1007;gene_id=YML047C;tss_id=TSS4982;nbOverlaps=0;ID=YML047C;Name=PRM6
XIII	S-MART	transcript	179893	180258	.	+	.	seqedit=false;p_id=P4863;gene_id=YML047W-A;tss_id=TSS6548;nbOverlaps=0;ID=YML047W-A;Name=YML047W-A
XVI	S-MART	transcript	115312	116487	.	+	.	seqedit=false;p_id=P4696;gene_id=YPL230W;tss_id=TSS3588;nbOverlaps=0;ID=YPL230W;Name=USV1
XVI	S-MART	transcript	596750	599551	.	+	.	seqedit=false;p_id=P3057;gene_id=YPR019W;tss_id=TSS6755;nbOverlaps=0;ID=YPR019W;Name=MCM4
XVI	S-MART	transcript	117067	117687	.	+	.	seqedit=false;p_id=P303;gene_id=YPL229W;tss_id=TSS590;nbOverlaps=0;ID=YPL229W;Name=YPL229W
XVI	S-MART	transcript	108652	114315	.	+	.	seqedit=false;p_id=P3863;gene_id=YPL231W;tss_id=TSS1403;nbOverlaps=0;ID=YPL231W;Name=FAS2
XVI	S-MART	transcript	107275	108147	.	+	.	seqedit=false;p_id=P4066;gene_id=YPL232W;tss_id=TSS261;nbOverlaps=0;ID=YPL232W;Name=SSO1
XVI	S-MART	transcript	106172	106822	.	+	.	seqedit=false;p_id=P3175;gene_id=YPL233W;tss_id=TSS1625;nbOverlaps=0;ID=YPL233W;Name=NSL1
XVI	S-MART	transcript	104946	105440	.	-	.	seqedit=false;p_id=P5395;gene_id=YPL234C;tss_id=TSS6987;nbOverlaps=0;ID=YPL234C;Name=VMA11
XVI	S-MART	transcript	103232	104647	.	+	.	seqedit=false;p_id=P4074;gene_id=YPL235W;tss_id=TSS4689;nbOverlaps=0;ID=YPL235W;Name=RVB2
XVI	S-MART	transcript	101608	102702	.	-	.	seqedit=false;p_id=P4628;gene_id=YPL236C;tss_id=TSS191;nbOverlaps=0;ID=YPL236C;Name=ENV7
XVI	S-MART	transcript	100496	101353	.	+	.	seqedit=false;p_id=P3952;gene_id=YPL237W;tss_id=TSS3242;nbOverlaps=0;ID=YPL237W;Name=SUI3
XVI	S-MART	transcript	99484	100086	.	+	.	seqedit=false;p_id=P5866;gene_id=YPL239W;tss_id=TSS2708;nbOverlaps=0;ID=YPL239W;Name=YAR1
XVI	S-MART	transcript	100474	100863	.	-	.	seqedit=false;p_id=P5982;gene_id=YPL238C;tss_id=TSS963;nbOverlaps=0;ID=YPL238C;Name=YPL238C
XVI	S-MART	transcript	96496	98625	.	-	.	seqedit=false;p_id=P238;gene_id=YPL240C;tss_id=TSS5258;nbOverlaps=0;ID=YPL240C;Name=HSP82
XVI	S-MART	transcript	95372	96258	.	-	.	seqedit=false;p_id=P1985;gene_id=YPL241C;tss_id=TSS2130;nbOverlaps=0;ID=YPL241C;Name=CIN2
XVI	S-MART	exon	95372	96153	.	-	.	ID=YPL241C-exon1;Name=CIN2-exon1;Parent=YPL241C
XVI	S-MART	exon	96234	96258	.	-	.	ID=YPL241C-exon2;Name=CIN2-exon2;Parent=YPL241C
XVI	S-MART	transcript	90622	95109	.	-	.	seqedit=false;p_id=P546;gene_id=YPL242C;tss_id=TSS5189;nbOverlaps=0;ID=YPL242C;Name=IQG1
XVI	S-MART	transcript	304387	305058	.	+	.	seqedit=false;p_id=P5913;gene_id=YPL130W;tss_id=TSS3943;nbOverlaps=0;ID=YPL130W;Name=SPO19
XVI	S-MART	transcript	87014	88033	.	-	.	seqedit=false;p_id=P3361;gene_id=YPL244C;tss_id=TSS4067;nbOverlaps=0;ID=YPL244C;Name=HUT1
XVI	S-MART	transcript	84509	85297	.	-	.	seqedit=false;p_id=P4875;gene_id=YPL246C;tss_id=TSS3192;nbOverlaps=0;ID=YPL246C;Name=RBD2
IX	S-MART	transcript	404873	405967	.	-	.	seqedit=false;p_id=P1503;gene_id=YIR026C;tss_id=TSS5444;nbOverlaps=0;ID=YIR026C;Name=YVH1
XVI	S-MART	transcript	85586	86950	.	+	.	seqedit=false;p_id=P2427;gene_id=YPL245W;tss_id=TSS6936;nbOverlaps=0;ID=YPL245W;Name=YPL245W
XVI	S-MART	transcript	79711	82356	.	-	.	seqedit=false;p_id=P4509;gene_id=YPL248C;tss_id=TSS2053;nbOverlaps=0;ID=YPL248C;Name=GAL4
XVI	S-MART	transcript	82625	84196	.	-	.	seqedit=false;p_id=P3358;gene_id=YPL247C;tss_id=TSS6634;nbOverlaps=0;ID=YPL247C;Name=YPL247C
XVI	S-MART	transcript	76669	79353	.	-	.	seqedit=false;p_id=P1038;gene_id=YPL249C;tss_id=TSS6058;nbOverlaps=0;ID=YPL249C;Name=GYP5
XVI	S-MART	transcript	75699	76239	.	-	.	seqedit=false;p_id=P911;gene_id=YPL249C-A;tss_id=TSS606;nbOverlaps=0;ID=YPL249C-A;Name=RPL36B
XVI	S-MART	exon	75699	75985	.	-	.	ID=YPL249C-A-exon1;Name=RPL36B-exon1;Parent=YPL249C-A
XVI	S-MART	exon	76224	76239	.	-	.	ID=YPL249C-A-exon2;Name=RPL36B-exon2;Parent=YPL249C-A
XVI	S-MART	transcript	74309	74719	.	-	.	seqedit=false;p_id=P3616;gene_id=YPL250C;tss_id=TSS3964;nbOverlaps=0;ID=YPL250C;Name=ICY2
XV	S-MART	transcript	608640	609197	.	-	.	seqedit=false;p_id=P5943;gene_id=YOR148C;tss_id=TSS5284;nbOverlaps=0;ID=YOR148C;Name=SPP2
XIII	S-MART	transcript	570300	571016	.	-	.	seqedit=false;p_id=P2144;gene_id=YMR156C;tss_id=TSS914;nbOverlaps=0;ID=YMR156C;Name=TPP1
XVI	S-MART	transcript	73363	73881	.	-	.	seqedit=false;p_id=P640;gene_id=YPL252C;tss_id=TSS3332;nbOverlaps=0;ID=YPL252C;Name=YAH1
XVI	S-MART	transcript	73625	73927	.	+	.	seqedit=false;p_id=P5916;gene_id=YPL251W;tss_id=TSS6091;nbOverlaps=0;ID=YPL251W;Name=YPL251W
XVI	S-MART	transcript	71063	73006	.	-	.	seqedit=false;p_id=P5382;gene_id=YPL253C;tss_id=TSS2416;nbOverlaps=0;ID=YPL253C;Name=VIK1
XVI	S-MART	transcript	599870	600217	.	+	.	seqedit=false;p_id=P346;gene_id=YPR020W;tss_id=TSS363;nbOverlaps=0;ID=YPR020W;Name=ATP20
XVI	S-MART	transcript	69485	70951	.	+	.	seqedit=false;p_id=P839;gene_id=YPL254W;tss_id=TSS2520;nbOverlaps=0;ID=YPL254W;Name=HFI1
XVI	S-MART	transcript	67725	68882	.	+	.	seqedit=false;p_id=P5673;gene_id=YPL255W;tss_id=TSS1434;nbOverlaps=0;ID=YPL255W;Name=BBP1
XVI	S-MART	transcript	64977	66614	.	-	.	seqedit=false;p_id=P2163;gene_id=YPL256C;tss_id=TSS6965;nbOverlaps=0;ID=YPL256C;Name=CLN2
XVI	S-MART	transcript	56748	58070	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_00;p_id=P4306;gene_id=YPL257W-A;tss_id=TSS6216;nbOverlaps=33;ID=YPL257W-A;Name=YPL257W-A
XVI	S-MART	transcript	63279	63860	.	+	.	seqedit=false;p_id=P6361;gene_id=YPL257W;tss_id=TSS847;nbOverlaps=0;ID=YPL257W;Name=YPL257W
XVI	S-MART	transcript	56748	62016	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:10819:20066#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P5876;gene_id=YPL257W-B;tss_id=TSS6216;nbOverlaps=113;ID=YPL257W-B;Name=YPL257W-B
XVI	S-MART	exon	56748	58052	.	+	.	ID=YPL257W-B-exon1;Name=YPL257W-B-exon1;Parent=YPL257W-B
XVI	S-MART	exon	58054	62016	.	+	.	ID=YPL257W-B-exon2;Name=YPL257W-B-exon2;Parent=YPL257W-B
XVI	S-MART	transcript	53498	55153	.	-	.	seqedit=false;p_id=P347;gene_id=YPL258C;tss_id=TSS4523;nbOverlaps=0;ID=YPL258C;Name=THI21
XVI	S-MART	transcript	51244	52671	.	-	.	seqedit=false;p_id=P3896;gene_id=YPL259C;tss_id=TSS1953;nbOverlaps=0;ID=YPL259C;Name=APM1
XVI	S-MART	transcript	47336	48802	.	+	.	seqedit=false;p_id=P2740;gene_id=YPL262W;tss_id=TSS4052;nbOverlaps=0;ID=YPL262W;Name=FUM1
XVI	S-MART	transcript	49303	50958	.	+	.	seqedit=false;p_id=P2371;gene_id=YPL260W;tss_id=TSS2656;nbOverlaps=0;ID=YPL260W;Name=YPL260W
XVI	S-MART	transcript	48996	49304	.	-	.	seqedit=false;p_id=P6521;gene_id=YPL261C;tss_id=TSS3419;nbOverlaps=0;ID=YPL261C;Name=YPL261C
XVI	S-MART	transcript	44551	46506	.	-	.	seqedit=false;p_id=P2184;gene_id=YPL263C;tss_id=TSS4615;nbOverlaps=0;ID=YPL263C;Name=KEL3
XVI	S-MART	transcript	41043	42869	.	+	.	seqedit=false;p_id=P2991;gene_id=YPL265W;tss_id=TSS2207;nbOverlaps=0;ID=YPL265W;Name=DIP5
XVI	S-MART	transcript	303121	304014	.	+	.	seqedit=false;p_id=P1345;gene_id=YPL131W;tss_id=TSS3422;nbOverlaps=0;ID=YPL131W;Name=RPL5
XIV	S-MART	transcript	286308	287609	.	+	.	seqedit=false;p_id=P3749;gene_id=YNL188W;tss_id=TSS3902;nbOverlaps=0;ID=YNL188W;Name=KAR1
XVI	S-MART	transcript	38169	38798	.	+	.	seqedit=false;p_id=P4775;gene_id=YPL267W;tss_id=TSS3366;nbOverlaps=0;ID=YPL267W;Name=ACM1
IX	S-MART	transcript	406260	407642	.	-	.	seqedit=false;p_id=P2730;gene_id=YIR027C;tss_id=TSS4397;nbOverlaps=0;ID=YIR027C;Name=DAL1
XVI	S-MART	transcript	35236	37845	.	+	.	seqedit=false;p_id=P2762;gene_id=YPL268W;tss_id=TSS270;nbOverlaps=0;ID=YPL268W;Name=PLC1
XVI	S-MART	transcript	33013	34947	.	+	.	seqedit=false;p_id=P1758;gene_id=YPL269W;tss_id=TSS5193;nbOverlaps=0;ID=YPL269W;Name=KAR9
XVI	S-MART	transcript	30482	32803	.	+	.	seqedit=false;p_id=P6030;gene_id=YPL270W;tss_id=TSS1076;nbOverlaps=0;ID=YPL270W;Name=MDL2
XVI	S-MART	transcript	30079	30267	.	+	.	seqedit=false;p_id=P3380;gene_id=YPL271W;tss_id=TSS2732;nbOverlaps=0;ID=YPL271W;Name=ATP15
XVI	S-MART	transcript	25087	26064	.	+	.	seqedit=false;p_id=P5319;gene_id=YPL273W;tss_id=TSS5840;nbOverlaps=0;ID=YPL273W;Name=SAM4
XVI	S-MART	transcript	26611	28164	.	-	.	seqedit=false;p_id=P3299;gene_id=YPL272C;tss_id=TSS3695;nbOverlaps=0;ID=YPL272C;Name=YPL272C
XVI	S-MART	transcript	22938	24701	.	+	.	seqedit=false;p_id=P78;gene_id=YPL274W;tss_id=TSS1227;nbOverlaps=0;ID=YPL274W;Name=SAM3
XVI	S-MART	transcript	18369	19079	.	+	.	seqedit=false;gene_id=YPL275W;tss_id=TSS6163;nbOverlaps=0;ID=YPL275W;Name=FDH2
XV	S-MART	transcript	609838	611388	.	-	.	seqedit=false;p_id=P3441;gene_id=YOR149C;tss_id=TSS742;nbOverlaps=0;ID=YOR149C;Name=SMP3
XVI	S-MART	transcript	11887	12600	.	+	.	seqedit=false;p_id=P126;gene_id=YPL280W;tss_id=TSS2454;nbOverlaps=0;ID=YPL280W;Name=HSP32
XVI	S-MART	transcript	17948	18385	.	+	.	seqedit=false;gene_id=YPL276W;tss_id=TSS5141;nbOverlaps=0;ID=YPL276W;Name=YPL276W
XVI	S-MART	transcript	15405	16868	.	-	.	seqedit=false;p_id=P853;gene_id=YPL277C;tss_id=TSS1447;nbOverlaps=0;ID=YPL277C;Name=YPL277C
XVI	S-MART	transcript	15053	15355	.	-	.	seqedit=false;p_id=P5840;gene_id=YPL278C;tss_id=TSS2793;nbOverlaps=0;ID=YPL278C;Name=YPL278C
XVI	S-MART	transcript	600649	603357	.	-	.	seqedit=false;p_id=P5065;gene_id=YPR021C;tss_id=TSS2809;nbOverlaps=0;ID=YPR021C;Name=AGC1
XVI	S-MART	transcript	13228	14355	.	-	.	seqedit=false;p_id=P5621;gene_id=YPL279C;tss_id=TSS5000;nbOverlaps=0;ID=YPL279C;Name=YPL279C
XVI	S-MART	transcript	9557	10870	.	-	.	seqedit=false;p_id=P2737;gene_id=YPL281C;tss_id=TSS4999;nbOverlaps=0;ID=YPL281C;Name=ERR2
III	S-MART	transcript	110808	111675	.	-	.	seqedit=false;p_id=P3944;gene_id=YCL002C;tss_id=TSS5928;nbOverlaps=0;ID=YCL002C;Name=YCL002C
III	S-MART	exon	110808	111557	.	-	.	ID=YCL002C-exon1;Name=YCL002C-exon1;Parent=YCL002C
III	S-MART	exon	111634	111675	.	-	.	ID=YCL002C-exon2;Name=YCL002C-exon2;Parent=YCL002C
IV	S-MART	transcript	1434500	1434991	.	-	.	seqedit=false;p_id=P504;gene_id=YDR491C;tss_id=TSS1603;nbOverlaps=0;ID=YDR491C;Name=YDR491C
IV	S-MART	transcript	1436217	1436588	.	+	.	seqedit=false;p_id=P402;gene_id=YDR493W;tss_id=TSS4441;nbOverlaps=0;ID=YDR493W;Name=MZM1
III	S-MART	transcript	108021	108791	.	+	.	seqedit=false;p_id=P1639;gene_id=YCL005W;tss_id=TSS6489;nbOverlaps=0;ID=YCL005W;Name=LDB16
III	S-MART	transcript	107023	107417	.	+	.	seqedit=false;p_id=P2615;gene_id=YCL005W-A;tss_id=TSS1614;nbOverlaps=0;ID=YCL005W-A;Name=VMA9
III	S-MART	exon	107023	107033	.	+	.	ID=YCL005W-A-exon1;Name=VMA9-exon1;Parent=YCL005W-A
III	S-MART	exon	107111	107191	.	+	.	ID=YCL005W-A-exon2;Name=VMA9-exon2;Parent=YCL005W-A
III	S-MART	exon	107288	107417	.	+	.	ID=YCL005W-A-exon3;Name=VMA9-exon3;Parent=YCL005W-A
IV	S-MART	transcript	1441433	1443403	.	-	.	seqedit=false;p_id=P2432;gene_id=YDR496C;tss_id=TSS898;nbOverlaps=0;ID=YDR496C;Name=PUF6
IV	S-MART	transcript	1443713	1445467	.	-	.	seqedit=false;p_id=P3710;gene_id=YDR497C;tss_id=TSS2774;nbOverlaps=0;ID=YDR497C;Name=ITR1
IV	S-MART	transcript	1445843	1446994	.	-	.	seqedit=false;p_id=P668;gene_id=YDR498C;tss_id=TSS5234;nbOverlaps=0;ID=YDR498C;Name=SEC20
III	S-MART	transcript	105696	106853	.	-	.	seqedit=false;p_id=P128;gene_id=YCL008C;tss_id=TSS6251;nbOverlaps=0;ID=YCL008C;Name=STP22
III	S-MART	transcript	106974	107366	.	-	.	seqedit=false;p_id=P3170;gene_id=YCL007C;tss_id=TSS1222;nbOverlaps=0;ID=YCL007C;Name=YCL007C
III	S-MART	transcript	104619	105548	.	-	.	seqedit=false;p_id=P5788;gene_id=YCL009C;tss_id=TSS6754;nbOverlaps=0;ID=YCL009C;Name=ILV6
III	S-MART	transcript	103571	104350	.	-	.	seqedit=false;p_id=P6636;gene_id=YCL010C;tss_id=TSS3771;nbOverlaps=0;ID=YCL010C;Name=SGF29
III	S-MART	transcript	102075	103358	.	-	.	seqedit=false;p_id=P4983;gene_id=YCL011C;tss_id=TSS3529;nbOverlaps=0;ID=YCL011C;Name=GBP2
XVI	S-MART	transcript	301716	302618	.	+	.	seqedit=false;p_id=P5455;gene_id=YPL132W;tss_id=TSS3770;nbOverlaps=0;ID=YPL132W;Name=COX11
IV	S-MART	transcript	1453310	1454464	.	-	.	seqedit=false;p_id=P529;gene_id=YDR502C;tss_id=TSS5327;nbOverlaps=0;ID=YDR502C;Name=SAM2
IV	S-MART	transcript	1455042	1455866	.	-	.	seqedit=false;p_id=P2367;gene_id=YDR503C;tss_id=TSS5582;nbOverlaps=0;ID=YDR503C;Name=LPP1
IX	S-MART	transcript	408468	410375	.	+	.	seqedit=false;p_id=P368;gene_id=YIR028W;tss_id=TSS328;nbOverlaps=0;ID=YIR028W;Name=DAL4
IV	S-MART	transcript	1456311	1456694	.	-	.	seqedit=false;p_id=P6026;gene_id=YDR504C;tss_id=TSS2452;nbOverlaps=0;ID=YDR504C;Name=SPG3
IV	S-MART	transcript	1456695	1459220	.	-	.	seqedit=false;p_id=P1731;gene_id=YDR505C;tss_id=TSS2248;nbOverlaps=0;ID=YDR505C;Name=PSP1
III	S-MART	transcript	94621	95763	.	-	.	seqedit=false;p_id=P5139;gene_id=YCL016C;tss_id=TSS6575;nbOverlaps=0;ID=YCL016C;Name=DCC1
III	S-MART	transcript	92777	94270	.	-	.	seqedit=false;p_id=P4395;gene_id=YCL017C;tss_id=TSS528;nbOverlaps=0;ID=YCL017C;Name=NFS1
III	S-MART	transcript	91324	92418	.	+	.	seqedit=false;p_id=P6625;gene_id=YCL018W;tss_id=TSS4077;nbOverlaps=0;ID=YCL018W;Name=LEU2
III	S-MART	transcript	83620	83997	.	+	.	seqedit=false;p_id=P2923;gene_id=YCL021W-A;tss_id=TSS4445;nbOverlaps=0;ID=YCL021W-A;Name=YCL021W-A
III	S-MART	transcript	85102	90415	.	+	.	seqedit=false;p_id=P3256;gene_id=YCL019W;tss_id=TSS1270;nbOverlaps=0;ID=YCL019W;Name=YCL019W
III	S-MART	exon	85102	86391	.	+	.	ID=YCL019W-exon1;Name=YCL019W-exon1;Parent=YCL019W
III	S-MART	exon	86393	90415	.	+	.	ID=YCL019W-exon2;Name=YCL019W-exon2;Parent=YCL019W
IV	S-MART	transcript	1469400	1469705	.	+	.	seqedit=false;p_id=P4643;gene_id=YDR510W;tss_id=TSS1108;nbOverlaps=0;ID=YDR510W;Name=SMT3
XV	S-MART	transcript	611999	612490	.	+	.	seqedit=false;p_id=P2080;gene_id=YOR150W;tss_id=TSS4750;nbOverlaps=0;ID=YOR150W;Name=MRPL23
IV	S-MART	transcript	1470017	1470418	.	+	.	seqedit=false;p_id=P266;gene_id=YDR511W;tss_id=TSS4214;nbOverlaps=0;ID=YDR511W;Name=ACN9
IV	S-MART	transcript	1470500	1471063	.	-	.	seqedit=false;p_id=P1398;gene_id=YDR512C;tss_id=TSS2442;nbOverlaps=0;ID=YDR512C;Name=EMI1
IV	S-MART	transcript	1471017	1471448	.	+	.	seqedit=false;p_id=P3927;gene_id=YDR513W;tss_id=TSS682;nbOverlaps=0;ID=YDR513W;Name=GRX2
IV	S-MART	transcript	1473429	1474772	.	+	.	seqedit=false;p_id=P391;gene_id=YDR515W;tss_id=TSS6233;nbOverlaps=0;ID=YDR515W;Name=SLF1
XVI	S-MART	transcript	608826	610031	.	-	.	seqedit=false;p_id=P616;gene_id=YPR023C;tss_id=TSS4780;nbOverlaps=0;ID=YPR023C;Name=EAF3
IV	S-MART	transcript	1471548	1472999	.	-	.	seqedit=false;p_id=P569;gene_id=YDR514C;tss_id=TSS6811;nbOverlaps=0;ID=YDR514C;Name=YDR514C
IV	S-MART	transcript	1474974	1476476	.	-	.	seqedit=false;p_id=P4012;gene_id=YDR516C;tss_id=TSS775;nbOverlaps=0;ID=YDR516C;Name=EMI2
IV	S-MART	transcript	1477239	1478357	.	+	.	seqedit=false;p_id=P2338;gene_id=YDR517W;tss_id=TSS1755;nbOverlaps=0;ID=YDR517W;Name=GRH1
III	S-MART	transcript	73405	73986	.	-	.	seqedit=false;p_id=P4958;gene_id=YCL026C-B;tss_id=TSS2986;nbOverlaps=0;ID=YCL026C-B;Name=HBN1
III	S-MART	transcript	71803	73341	.	+	.	seqedit=false;p_id=P1280;gene_id=YCL027W;tss_id=TSS1691;nbOverlaps=0;ID=YCL027W;Name=FUS1
IV	S-MART	transcript	1481085	1483403	.	-	.	seqedit=false;p_id=P4922;gene_id=YDR520C;tss_id=TSS5614;nbOverlaps=0;ID=YDR520C;Name=URC2
III	S-MART	transcript	68599	69921	.	-	.	seqedit=false;p_id=P101;gene_id=YCL029C;tss_id=TSS1814;nbOverlaps=0;ID=YCL029C;Name=BIK1
III	S-MART	transcript	65934	68333	.	-	.	seqedit=false;p_id=P1988;gene_id=YCL030C;tss_id=TSS6300;nbOverlaps=0;ID=YCL030C;Name=HIS4
III	S-MART	transcript	64675	65568	.	-	.	seqedit=false;p_id=P4164;gene_id=YCL031C;tss_id=TSS1832;nbOverlaps=0;ID=YCL031C;Name=RRP7
III	S-MART	transcript	63441	64481	.	+	.	seqedit=false;p_id=P2447;gene_id=YCL032W;tss_id=TSS5073;nbOverlaps=0;ID=YCL032W;Name=STE50
IV	S-MART	transcript	1489871	1489990	.	-	.	seqedit=false;p_id=P5715;gene_id=YDR524C-A;tss_id=TSS4465;nbOverlaps=0;ID=YDR524C-A;Name=YDR524C-A
IV	S-MART	transcript	1489598	1489798	.	-	.	seqedit=false;p_id=P312;gene_id=YDR524C-B;tss_id=TSS5723;nbOverlaps=0;ID=YDR524C-B;Name=YDR524C-B
III	S-MART	transcript	60841	61173	.	-	.	seqedit=false;p_id=P2061;gene_id=YCL035C;tss_id=TSS6930;nbOverlaps=0;ID=YCL035C;Name=GRX1
XVI	S-MART	transcript	664960	665490	.	+	.	seqedit=false;p_id=P6077;gene_id=YPR051W;tss_id=TSS1788;nbOverlaps=0;ID=YPR051W;Name=MAK3
III	S-MART	transcript	59026	60726	.	+	.	seqedit=false;p_id=P649;gene_id=YCL036W;tss_id=TSS1104;nbOverlaps=0;ID=YCL036W;Name=GFD2
III	S-MART	transcript	57374	58678	.	-	.	seqedit=false;p_id=P1563;gene_id=YCL037C;tss_id=TSS4845;nbOverlaps=0;ID=YCL037C;Name=SRO9
III	S-MART	transcript	54941	56527	.	-	.	seqedit=false;p_id=P2426;gene_id=YCL038C;tss_id=TSS6585;nbOverlaps=0;ID=YCL038C;Name=ATG22
XVI	S-MART	transcript	299888	301228	.	-	.	seqedit=false;p_id=P325;gene_id=YPL133C;tss_id=TSS4805;nbOverlaps=0;ID=YPL133C;Name=RDS2
IV	S-MART	transcript	1491075	1491545	.	-	.	seqedit=false;p_id=P4153;gene_id=YDR526C;tss_id=TSS5793;nbOverlaps=0;ID=YDR526C;Name=YDR526C
IV	S-MART	transcript	1494586	1495857	.	+	.	seqedit=false;p_id=P1020;gene_id=YDR528W;tss_id=TSS3370;nbOverlaps=0;ID=YDR528W;Name=HLR1
IX	S-MART	transcript	410807	411838	.	+	.	seqedit=false;p_id=P6022;gene_id=YIR029W;tss_id=TSS4960;nbOverlaps=0;ID=YIR029W;Name=DAL2
III	S-MART	transcript	48653	50221	.	-	.	seqedit=false;p_id=P117;gene_id=YCL043C;tss_id=TSS6352;nbOverlaps=0;ID=YCL043C;Name=PDI1
IV	S-MART	transcript	1496791	1497768	.	-	.	seqedit=false;p_id=P6305;gene_id=YDR530C;tss_id=TSS3415;nbOverlaps=0;ID=YDR530C;Name=APA2
IV	S-MART	transcript	1498232	1499335	.	+	.	seqedit=false;p_id=P5038;gene_id=YDR531W;tss_id=TSS735;nbOverlaps=0;ID=YDR531W;Name=CAB1
X	S-MART	transcript	193860	194873	.	-	.	seqedit=false;p_id=P3253;gene_id=YJL116C;tss_id=TSS1095;nbOverlaps=0;ID=YJL116C;Name=NCA3
III	S-MART	transcript	47111	48364	.	-	.	seqedit=false;p_id=P1417;gene_id=YCL044C;tss_id=TSS2902;nbOverlaps=0;ID=YCL044C;Name=MGR1
IV	S-MART	transcript	1501447	1502160	.	-	.	seqedit=false;p_id=P5894;gene_id=YDR533C;tss_id=TSS3186;nbOverlaps=0;ID=YDR533C;Name=HSP31
IV	S-MART	transcript	1503314	1504900	.	-	.	seqedit=false;p_id=P5670;gene_id=YDR534C;tss_id=TSS3557;nbOverlaps=0;ID=YDR534C;Name=FIT1
VII	S-MART	transcript	541850	541921	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)G3;tss_id=TSS3314;nbOverlaps=1950;ID=tE(UUC)G3;Name=tE(UUC)G3
IV	S-MART	transcript	1508005	1509714	.	+	.	seqedit=false;p_id=P3138;gene_id=YDR536W;tss_id=TSS370;nbOverlaps=0;ID=YDR536W;Name=STL1
III	S-MART	transcript	42165	43556	.	+	.	seqedit=false;p_id=P6623;gene_id=YCL048W;tss_id=TSS3110;nbOverlaps=0;ID=YCL048W;Name=SPS22
XV	S-MART	transcript	612997	616671	.	-	.	seqedit=false;p_id=P1952;gene_id=YOR151C;tss_id=TSS6477;nbOverlaps=0;ID=YOR151C;Name=RPB2
III	S-MART	transcript	41488	41727	.	+	.	seqedit=false;p_id=P4081;gene_id=YCL048W-A;tss_id=TSS472;nbOverlaps=0;ID=YCL048W-A;Name=YCL048W-A
III	S-MART	transcript	37836	38801	.	-	.	seqedit=false;p_id=P4219;gene_id=YCL050C;tss_id=TSS1244;nbOverlaps=0;ID=YCL050C;Name=APA1
III	S-MART	transcript	39786	40724	.	-	.	seqedit=false;p_id=P4611;gene_id=YCL049C;tss_id=TSS4993;nbOverlaps=0;ID=YCL049C;Name=YCL049C
IV	S-MART	transcript	1510856	1511461	.	-	.	seqedit=false;p_id=P5033;gene_id=YDR537C;tss_id=TSS3167;nbOverlaps=0;ID=YDR537C;Name=YDR537C
XVI	S-MART	transcript	603911	607312	.	-	.	seqedit=false;p_id=P6399;gene_id=YPR022C;tss_id=TSS4318;nbOverlaps=0;ID=YPR022C;Name=YPR022C
III	S-MART	transcript	34143	35393	.	-	.	seqedit=false;p_id=P271;gene_id=YCL052C;tss_id=TSS1134;nbOverlaps=0;ID=YCL052C;Name=PBN1
IV	S-MART	transcript	1517136	1517675	.	-	.	seqedit=false;p_id=P912;gene_id=YDR540C;tss_id=TSS3052;nbOverlaps=0;ID=YDR540C;Name=IRC4
IV	S-MART	transcript	1523249	1523611	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:14589:7302#0--HWUSI-EAS1656_0009_FC:3:112:13748:3674#0--HWUSI-EAS1656_000;p_id=P3764;gene_id=YDR542W;tss_id=TSS6405;nbOverlaps=3;ID=YDR542W;Name=PAU10
III	S-MART	transcript	26925	27359	.	-	.	seqedit=false;p_id=P4227;gene_id=YCL056C;tss_id=TSS1732;nbOverlaps=0;ID=YCL056C;Name=PEX34
III	S-MART	transcript	24032	24325	.	-	.	seqedit=false;p_id=P2890;gene_id=YCL057C-A;tss_id=TSS5704;nbOverlaps=0;ID=YCL057C-A;Name=MOS1
IV	S-MART	transcript	1524634	1524933	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:7868:5097#0--HWUSI-EAS1656_0009_FC:3:105:5108:9783#0--HWUSI-EAS1656_0009_;p_id=P4785;gene_id=YDR543C;tss_id=TSS789;nbOverlaps=3;ID=YDR543C;Name=YDR543C
XVI	S-MART	transcript	298571	299503	.	-	.	seqedit=false;p_id=P1162;gene_id=YPL134C;tss_id=TSS4169;nbOverlaps=0;ID=YPL134C;Name=ODC1
XV	S-MART	transcript	619840	624375	.	+	.	seqedit=false;p_id=P5979;gene_id=YOR153W;tss_id=TSS1153;nbOverlaps=0;ID=YOR153W;Name=PDR5
XVI	S-MART	transcript	610481	612724	.	+	.	seqedit=false;p_id=P3515;gene_id=YPR024W;tss_id=TSS173;nbOverlaps=0;ID=YPR024W;Name=YME1
XVI	S-MART	transcript	297678	297851	.	-	.	seqedit=false;p_id=P118;gene_id=YPL135C-A;tss_id=TSS5735;nbOverlaps=0;ID=YPL135C-A;Name=YPL135C-A
XV	S-MART	transcript	617518	618288	.	-	.	seqedit=false;p_id=P2910;gene_id=YOR152C;tss_id=TSS1033;nbOverlaps=0;ID=YOR152C;Name=YOR152C
XVI	S-MART	transcript	613377	614558	.	-	.	seqedit=false;p_id=P4061;gene_id=YPR025C;tss_id=TSS339;nbOverlaps=0;ID=YPR025C;Name=CCL1
III	S-MART	transcript	306735	306932	.	+	.	seqedit=false;p_id=P3969;gene_id=YCR102W-A;tss_id=TSS379;nbOverlaps=0;ID=YCR102W-A;Name=YCR102W-A
III	S-MART	transcript	300832	301299	.	-	.	seqedit=false;p_id=P2224;gene_id=YCR099C;tss_id=TSS6258;nbOverlaps=0;ID=YCR099C;Name=YCR099C
III	S-MART	transcript	301271	302221	.	-	.	seqedit=false;p_id=P2232;gene_id=YCR100C;tss_id=TSS3;nbOverlaps=0;ID=YCR100C;Name=YCR100C
III	S-MART	transcript	302482	303030	.	-	.	seqedit=false;p_id=P2008;gene_id=YCR101C;tss_id=TSS4913;nbOverlaps=0;ID=YCR101C;Name=YCR101C
III	S-MART	transcript	304361	305467	.	-	.	seqedit=false;p_id=P5478;gene_id=YCR102C;tss_id=TSS4512;nbOverlaps=0;ID=YCR102C;Name=YCR102C
XVI	S-MART	transcript	297553	298050	.	+	.	seqedit=false;p_id=P1223;gene_id=YPL135W;tss_id=TSS5144;nbOverlaps=0;ID=YPL135W;Name=ISU1
XIV	S-MART	transcript	270275	271171	.	-	.	seqedit=false;p_id=P3287;gene_id=YNL196C;tss_id=TSS4532;nbOverlaps=0;ID=YNL196C;Name=SLZ1
III	S-MART	transcript	309070	310155	.	+	.	seqedit=false;p_id=P3372;gene_id=YCR105W;tss_id=TSS6308;nbOverlaps=0;ID=YCR105W;Name=ADH7
IX	S-MART	transcript	413015	414679	.	-	.	seqedit=false;p_id=P979;gene_id=YIR031C;tss_id=TSS3930;nbOverlaps=0;ID=YIR031C;Name=DAL7
III	S-MART	transcript	310958	313456	.	+	.	seqedit=false;p_id=P793;gene_id=YCR106W;tss_id=TSS6441;nbOverlaps=0;ID=YCR106W;Name=RDS1
III	S-MART	transcript	313890	314981	.	+	.	seqedit=false;p_id=P1868;gene_id=YCR107W;tss_id=TSS3198;nbOverlaps=0;ID=YCR107W;Name=AAD3
IV	S-MART	transcript	447984	449276	.	+	.	seqedit=false;p_id=P4189;gene_id=YDL001W;tss_id=TSS3521;nbOverlaps=0;ID=YDL001W;Name=RMD1
III	S-MART	transcript	315997	316188	.	-	.	seqedit=false;p_id=P1906;gene_id=YCR108C;tss_id=TSS6139;nbOverlaps=0;ID=YCR108C;Name=YCR108C
IV	S-MART	transcript	446967	447578	.	-	.	seqedit=false;p_id=P4586;gene_id=YDL002C;tss_id=TSS4678;nbOverlaps=0;ID=YDL002C;Name=NHP10
IV	S-MART	transcript	444683	446383	.	+	.	seqedit=false;p_id=P6046;gene_id=YDL003W;tss_id=TSS5131;nbOverlaps=0;ID=YDL003W;Name=MCD1
IV	S-MART	transcript	443029	443511	.	+	.	seqedit=false;p_id=P1037;gene_id=YDL004W;tss_id=TSS4295;nbOverlaps=0;ID=YDL004W;Name=ATP16
IV	S-MART	transcript	441014	442309	.	-	.	seqedit=false;p_id=P5720;gene_id=YDL005C;tss_id=TSS3405;nbOverlaps=0;ID=YDL005C;Name=MED2
IV	S-MART	transcript	439909	440754	.	+	.	seqedit=false;p_id=P1993;gene_id=YDL006W;tss_id=TSS4141;nbOverlaps=0;ID=YDL006W;Name=PTC1
IV	S-MART	transcript	436567	436824	.	-	.	seqedit=false;p_id=P797;gene_id=YDL007C-A;tss_id=TSS2830;nbOverlaps=0;ID=YDL007C-A;Name=YDL007C-A
IV	S-MART	transcript	438047	439360	.	+	.	seqedit=false;p_id=P1890;gene_id=YDL007W;tss_id=TSS1739;nbOverlaps=0;ID=YDL007W;Name=RPT2
IV	S-MART	transcript	433497	433994	.	+	.	seqedit=false;p_id=P1629;gene_id=YDL008W;tss_id=TSS27;nbOverlaps=0;ID=YDL008W;Name=APC11
XVI	S-MART	transcript	615379	619014	.	+	.	seqedit=false;p_id=P4138;gene_id=YPR026W;tss_id=TSS4256;nbOverlaps=0;ID=YPR026W;Name=ATH1
IV	S-MART	transcript	432330	433025	.	+	.	seqedit=false;p_id=P5226;gene_id=YDL010W;tss_id=TSS4849;nbOverlaps=0;ID=YDL010W;Name=GRX6
IV	S-MART	transcript	432925	433248	.	-	.	seqedit=false;p_id=P3349;gene_id=YDL009C;tss_id=TSS2680;nbOverlaps=0;ID=YDL009C;Name=YDL009C
IV	S-MART	transcript	429067	430926	.	+	.	seqedit=false;p_id=P219;gene_id=YDL013W;tss_id=TSS2129;nbOverlaps=0;ID=YDL013W;Name=SLX5
IV	S-MART	transcript	432308	432631	.	-	.	seqedit=false;p_id=P1582;gene_id=YDL011C;tss_id=TSS1591;nbOverlaps=0;ID=YDL011C;Name=YDL011C
IV	S-MART	transcript	431108	431517	.	-	.	seqedit=false;p_id=P2264;gene_id=YDL012C;tss_id=TSS2435;nbOverlaps=0;ID=YDL012C;Name=YDL012C
IV	S-MART	exon	431108	431386	.	-	.	ID=YDL012C-exon1;Name=YDL012C-exon1;Parent=YDL012C
IV	S-MART	exon	431473	431517	.	-	.	ID=YDL012C-exon2;Name=YDL012C-exon2;Parent=YDL012C
XVI	S-MART	transcript	287514	289034	.	-	.	seqedit=false;p_id=P1452;gene_id=YPL140C;tss_id=TSS2508;nbOverlaps=0;ID=YPL140C;Name=MKK2
XVI	S-MART	transcript	283464	286061	.	-	.	seqedit=false;p_id=P3911;gene_id=YPL141C;tss_id=TSS5863;nbOverlaps=0;ID=YPL141C;Name=FRK1
IV	S-MART	transcript	427364	428347	.	+	.	seqedit=false;p_id=P6;gene_id=YDL014W;tss_id=TSS667;nbOverlaps=0;ID=YDL014W;Name=NOP1
IV	S-MART	transcript	426002	426934	.	-	.	seqedit=false;p_id=P131;gene_id=YDL015C;tss_id=TSS5220;nbOverlaps=0;ID=YDL015C;Name=TSC13
IV	S-MART	transcript	424209	425732	.	+	.	seqedit=false;p_id=P4332;gene_id=YDL017W;tss_id=TSS3919;nbOverlaps=0;ID=YDL017W;Name=CDC7
IV	S-MART	transcript	425570	425872	.	-	.	seqedit=false;p_id=P1917;gene_id=YDL016C;tss_id=TSS6531;nbOverlaps=0;ID=YDL016C;Name=YDL016C
IV	S-MART	transcript	422833	423510	.	-	.	seqedit=false;p_id=P528;gene_id=YDL018C;tss_id=TSS5839;nbOverlaps=0;ID=YDL018C;Name=ERP3
IV	S-MART	transcript	417663	421514	.	-	.	seqedit=false;p_id=P2856;gene_id=YDL019C;tss_id=TSS5101;nbOverlaps=0;ID=YDL019C;Name=OSH2
IV	S-MART	transcript	415113	416708	.	-	.	seqedit=false;p_id=P6415;gene_id=YDL020C;tss_id=TSS7056;nbOverlaps=0;ID=YDL020C;Name=RPN4
IV	S-MART	transcript	413953	414888	.	+	.	seqedit=false;p_id=P2573;gene_id=YDL021W;tss_id=TSS1819;nbOverlaps=0;ID=YDL021W;Name=GPM2
IV	S-MART	transcript	409808	410056	.	-	.	seqedit=false;p_id=P5927;gene_id=YDL022C-A;tss_id=TSS3331;nbOverlaps=0;ID=YDL022C-A;Name=YDL022C-A
XVI	S-MART	transcript	292817	296647	.	-	.	seqedit=false;p_id=P1295;gene_id=YPL137C;tss_id=TSS1251;nbOverlaps=0;ID=YPL137C;Name=GIP3
IV	S-MART	transcript	411825	413000	.	+	.	seqedit=false;p_id=P5565;gene_id=YDL022W;tss_id=TSS5314;nbOverlaps=0;ID=YDL022W;Name=GPD1
IV	S-MART	transcript	408451	409857	.	-	.	seqedit=false;p_id=P3878;gene_id=YDL024C;tss_id=TSS2563;nbOverlaps=0;ID=YDL024C;Name=DIA3
IX	S-MART	transcript	415030	415617	.	-	.	seqedit=false;p_id=P3171;gene_id=YIR032C;tss_id=TSS2720;nbOverlaps=0;ID=YIR032C;Name=DAL3
IV	S-MART	transcript	411761	412081	.	-	.	seqedit=false;p_id=P3246;gene_id=YDL023C;tss_id=TSS6593;nbOverlaps=0;ID=YDL023C;Name=YDL023C
IV	S-MART	transcript	405344	407206	.	-	.	seqedit=false;p_id=P6393;gene_id=YDL025C;tss_id=TSS3959;nbOverlaps=0;ID=YDL025C;Name=RTK1
IV	S-MART	transcript	405410	405514	.	+	.	seqedit=false;p_id=P1556;gene_id=YDL025W-A;tss_id=TSS2831;nbOverlaps=0;ID=YDL025W-A;Name=YDL025W-A
IV	S-MART	transcript	400997	403291	.	-	.	seqedit=false;p_id=P876;gene_id=YDL028C;tss_id=TSS2637;nbOverlaps=0;ID=YDL028C;Name=MPS1
IV	S-MART	transcript	404749	405060	.	+	.	seqedit=false;p_id=P2066;gene_id=YDL026W;tss_id=TSS1376;nbOverlaps=0;ID=YDL026W;Name=YDL026W
IV	S-MART	transcript	403695	404957	.	-	.	seqedit=false;p_id=P5556;gene_id=YDL027C;tss_id=TSS2012;nbOverlaps=0;ID=YDL027C;Name=YDL027C
IV	S-MART	transcript	399340	400638	.	+	.	seqedit=false;p_id=P1306;gene_id=YDL029W;tss_id=TSS5531;nbOverlaps=0;ID=YDL029W;Name=ARP2
IV	S-MART	exon	399340	399361	.	+	.	ID=YDL029W-exon1;Name=ARP2-exon1;Parent=YDL029W
IV	S-MART	exon	399485	400638	.	+	.	ID=YDL029W-exon2;Name=ARP2-exon2;Parent=YDL029W
XVI	S-MART	transcript	254814	255761	.	+	.	seqedit=false;p_id=P2899;gene_id=YPL157W;tss_id=TSS6945;nbOverlaps=0;ID=YPL157W;Name=TGS1
XVI	S-MART	transcript	252034	254310	.	-	.	seqedit=false;p_id=P269;gene_id=YPL158C;tss_id=TSS1398;nbOverlaps=0;ID=YPL158C;Name=AIM44
IV	S-MART	transcript	397537	399129	.	+	.	seqedit=false;p_id=P97;gene_id=YDL030W;tss_id=TSS1341;nbOverlaps=0;ID=YDL030W;Name=PRP9
IV	S-MART	transcript	394217	397204	.	+	.	seqedit=false;p_id=P746;gene_id=YDL031W;tss_id=TSS3325;nbOverlaps=0;ID=YDL031W;Name=DBP10
IV	S-MART	transcript	392659	393912	.	-	.	seqedit=false;p_id=P4366;gene_id=YDL033C;tss_id=TSS5026;nbOverlaps=0;ID=YDL033C;Name=SLM3
XVI	S-MART	transcript	623527	624202	.	+	.	seqedit=false;p_id=P2559;gene_id=YPR028W;tss_id=TSS1102;nbOverlaps=0;ID=YPR028W;Name=YOP1
XVI	S-MART	exon	623527	623577	.	+	.	ID=YPR028W-exon1;Name=YOP1-exon1;Parent=YPR028W
XVI	S-MART	exon	623711	624202	.	+	.	ID=YPR028W-exon2;Name=YOP1-exon2;Parent=YPR028W
IV	S-MART	transcript	393690	394001	.	+	.	seqedit=false;p_id=P4601;gene_id=YDL032W;tss_id=TSS2624;nbOverlaps=0;ID=YDL032W;Name=YDL032W
IV	S-MART	transcript	389172	392057	.	-	.	seqedit=false;p_id=P5708;gene_id=YDL035C;tss_id=TSS3912;nbOverlaps=0;ID=YDL035C;Name=GPR1
IV	S-MART	transcript	391783	392127	.	+	.	seqedit=false;p_id=P1571;gene_id=YDL034W;tss_id=TSS4747;nbOverlaps=0;ID=YDL034W;Name=YDL034W
IV	S-MART	transcript	387513	388901	.	-	.	seqedit=false;p_id=P3643;gene_id=YDL036C;tss_id=TSS5316;nbOverlaps=0;ID=YDL036C;Name=PUS9
IV	S-MART	transcript	384601	385587	.	-	.	seqedit=false;p_id=P692;gene_id=YDL037C;tss_id=TSS6263;nbOverlaps=0;ID=YDL037C;Name=BSC1
IV	S-MART	transcript	381985	384081	.	-	.	seqedit=false;p_id=P5052;gene_id=YDL039C;tss_id=TSS4250;nbOverlaps=0;ID=YDL039C;Name=PRM7
IV	S-MART	transcript	378874	381438	.	-	.	seqedit=false;p_id=P1794;gene_id=YDL040C;tss_id=TSS2119;nbOverlaps=0;ID=YDL040C;Name=NAT1
IV	S-MART	transcript	376757	378445	.	-	.	seqedit=false;p_id=P6136;gene_id=YDL042C;tss_id=TSS4550;nbOverlaps=0;ID=YDL042C;Name=SIR2
IV	S-MART	transcript	378102	378455	.	+	.	seqedit=false;p_id=P5061;gene_id=YDL041W;tss_id=TSS6549;nbOverlaps=0;ID=YDL041W;Name=YDL041W
IV	S-MART	transcript	375680	376480	.	-	.	seqedit=false;p_id=P1234;gene_id=YDL043C;tss_id=TSS2522;nbOverlaps=0;ID=YDL043C;Name=PRP11
IV	S-MART	transcript	373967	375289	.	-	.	seqedit=false;p_id=P6569;gene_id=YDL044C;tss_id=TSS621;nbOverlaps=0;ID=YDL044C;Name=MTF2
IV	S-MART	transcript	372688	373608	.	-	.	seqedit=false;p_id=P1272;gene_id=YDL045C;tss_id=TSS4144;nbOverlaps=0;ID=YDL045C;Name=FAD1
IV	S-MART	transcript	372248	372535	.	+	.	seqedit=false;p_id=P2251;gene_id=YDL045W-A;tss_id=TSS4603;nbOverlaps=0;ID=YDL045W-A;Name=MRP10
IV	S-MART	transcript	371240	371761	.	+	.	seqedit=false;p_id=P3094;gene_id=YDL046W;tss_id=TSS2717;nbOverlaps=0;ID=YDL046W;Name=NPC2
XI	S-MART	transcript	420155	421216	.	-	.	seqedit=false;p_id=P6058;gene_id=YKL011C;tss_id=TSS1016;nbOverlaps=0;ID=YKL011C;Name=CCE1
XVI	S-MART	transcript	296286	296654	.	+	.	seqedit=false;p_id=P5905;gene_id=YPL136W;tss_id=TSS1504;nbOverlaps=0;ID=YPL136W;Name=YPL136W
XI	S-MART	transcript	418310	420061	.	+	.	seqedit=false;p_id=P2053;gene_id=YKL012W;tss_id=TSS2459;nbOverlaps=0;ID=YKL012W;Name=PRP40
XI	S-MART	transcript	417508	418023	.	-	.	seqedit=false;p_id=P4581;gene_id=YKL013C;tss_id=TSS6243;nbOverlaps=0;ID=YKL013C;Name=ARC19
IX	S-MART	transcript	416124	419465	.	+	.	seqedit=false;p_id=P2408;gene_id=YIR033W;tss_id=TSS2550;nbOverlaps=0;ID=YIR033W;Name=MGA2
XI	S-MART	transcript	411619	416913	.	-	.	seqedit=false;p_id=P4944;gene_id=YKL014C;tss_id=TSS3983;nbOverlaps=0;ID=YKL014C;Name=URB1
XI	S-MART	transcript	408544	411483	.	+	.	seqedit=false;p_id=P5877;gene_id=YKL015W;tss_id=TSS2695;nbOverlaps=0;ID=YKL015W;Name=PUT3
XI	S-MART	transcript	407465	407989	.	-	.	seqedit=false;p_id=P415;gene_id=YKL016C;tss_id=TSS1362;nbOverlaps=0;ID=YKL016C;Name=ATP7
XI	S-MART	transcript	405190	407241	.	-	.	seqedit=false;p_id=P3190;gene_id=YKL017C;tss_id=TSS3916;nbOverlaps=0;ID=YKL017C;Name=HCS1
VII	S-MART	transcript	932541	935795	.	+	.	seqedit=false;p_id=P5981;gene_id=YGR218W;tss_id=TSS4568;nbOverlaps=0;ID=YGR218W;Name=CRM1
VII	S-MART	transcript	936074	936883	.	-	.	seqedit=false;p_id=P5500;gene_id=YGR220C;tss_id=TSS6541;nbOverlaps=0;ID=YGR220C;Name=MRPL9
XI	S-MART	transcript	402568	403518	.	+	.	seqedit=false;p_id=P4095;gene_id=YKL019W;tss_id=TSS2401;nbOverlaps=0;ID=YKL019W;Name=RAM2
XI	S-MART	transcript	398832	402080	.	-	.	seqedit=false;p_id=P4512;gene_id=YKL020C;tss_id=TSS6197;nbOverlaps=0;ID=YKL020C;Name=SPT23
XI	S-MART	transcript	397344	398750	.	-	.	seqedit=false;p_id=P4781;gene_id=YKL021C;tss_id=TSS3908;nbOverlaps=0;ID=YKL021C;Name=MAK11
XI	S-MART	transcript	394726	397248	.	-	.	seqedit=false;p_id=P2244;gene_id=YKL022C;tss_id=TSS1571;nbOverlaps=0;ID=YKL022C;Name=CDC16
XI	S-MART	transcript	393146	393373	.	-	.	seqedit=false;p_id=P6162;gene_id=YKL023C-A;tss_id=TSS1425;nbOverlaps=0;ID=YKL023C-A;Name=YKL023C-A
XI	S-MART	transcript	392526	393140	.	-	.	seqedit=false;p_id=P1192;gene_id=YKL024C;tss_id=TSS2823;nbOverlaps=0;ID=YKL024C;Name=URA6
XVI	S-MART	transcript	620425	621258	.	-	.	seqedit=false;p_id=P809;gene_id=YPR027C;tss_id=TSS2203;nbOverlaps=0;ID=YPR027C;Name=YPR027C
XI	S-MART	transcript	393721	394554	.	+	.	seqedit=false;p_id=P5931;gene_id=YKL023W;tss_id=TSS4900;nbOverlaps=0;ID=YKL023W;Name=YKL023W
XI	S-MART	transcript	390240	392279	.	-	.	seqedit=false;p_id=P6619;gene_id=YKL025C;tss_id=TSS2123;nbOverlaps=0;ID=YKL025C;Name=PAN3
XI	S-MART	transcript	389380	389883	.	-	.	seqedit=false;p_id=P1888;gene_id=YKL026C;tss_id=TSS3391;nbOverlaps=0;ID=YKL026C;Name=GPX1
XI	S-MART	transcript	385758	387206	.	+	.	seqedit=false;p_id=P6496;gene_id=YKL028W;tss_id=TSS4972;nbOverlaps=0;ID=YKL028W;Name=TFA1
XI	S-MART	transcript	387562	388905	.	+	.	seqedit=false;p_id=P3249;gene_id=YKL027W;tss_id=TSS2099;nbOverlaps=0;ID=YKL027W;Name=YKL027W
XI	S-MART	transcript	382716	384725	.	-	.	seqedit=false;p_id=P41;gene_id=YKL029C;tss_id=TSS128;nbOverlaps=0;ID=YKL029C;Name=MAE1
XI	S-MART	transcript	380065	381858	.	-	.	seqedit=false;p_id=P2660;gene_id=YKL032C;tss_id=TSS6594;nbOverlaps=0;ID=YKL032C;Name=IXR1
XI	S-MART	transcript	382498	383103	.	+	.	seqedit=false;p_id=P236;gene_id=YKL030W;tss_id=TSS2963;nbOverlaps=0;ID=YKL030W;Name=YKL030W
VII	S-MART	transcript	953960	954646	.	+	.	seqedit=false;p_id=P5430;gene_id=YGR232W;tss_id=TSS945;nbOverlaps=0;ID=YGR232W;Name=NAS6
XI	S-MART	transcript	375456	378572	.	+	.	seqedit=false;p_id=P1497;gene_id=YKL033W;tss_id=TSS1209;nbOverlaps=0;ID=YKL033W;Name=TTI1
VII	S-MART	transcript	959904	961103	.	+	.	seqedit=false;p_id=P5377;gene_id=YGR234W;tss_id=TSS864;nbOverlaps=0;ID=YGR234W;Name=YHB1
XI	S-MART	transcript	371829	374105	.	+	.	seqedit=false;p_id=P1262;gene_id=YKL034W;tss_id=TSS159;nbOverlaps=0;ID=YKL034W;Name=TUL1
XI	S-MART	transcript	369891	371390	.	+	.	seqedit=false;p_id=P5046;gene_id=YKL035W;tss_id=TSS2593;nbOverlaps=0;ID=YKL035W;Name=UGP1
XI	S-MART	transcript	369365	369721	.	+	.	seqedit=false;p_id=P3931;gene_id=YKL037W;tss_id=TSS4571;nbOverlaps=0;ID=YKL037W;Name=AIM26
XI	S-MART	transcript	369528	369920	.	-	.	seqedit=false;p_id=P1309;gene_id=YKL036C;tss_id=TSS1546;nbOverlaps=0;ID=YKL036C;Name=YKL036C
VII	S-MART	transcript	969187	970053	.	-	.	seqedit=false;p_id=P5533;gene_id=YGR239C;tss_id=TSS6834;nbOverlaps=0;ID=YGR239C;Name=PEX21
XVI	S-MART	transcript	291366	292427	.	-	.	seqedit=false;p_id=P3542;gene_id=YPL138C;tss_id=TSS875;nbOverlaps=0;ID=YPL138C;Name=SPP1
VII	S-MART	transcript	970771	973734	.	-	.	seqedit=false;p_id=P5187;gene_id=YGR240C;tss_id=TSS1623;nbOverlaps=0;ID=YGR240C;Name=PFK1
VII	S-MART	transcript	974577	974777	.	-	.	seqedit=false;p_id=P2587;gene_id=YGR240C-A;tss_id=TSS1765;nbOverlaps=0;ID=YGR240C-A;Name=YGR240C-A
IX	S-MART	transcript	419615	420736	.	-	.	seqedit=false;p_id=P5169;gene_id=YIR034C;tss_id=TSS7061;nbOverlaps=0;ID=YIR034C;Name=LYS1
VII	S-MART	transcript	977336	977776	.	+	.	seqedit=false;p_id=P3689;gene_id=YGR243W;tss_id=TSS5998;nbOverlaps=0;ID=YGR243W;Name=FMP43
VII	S-MART	transcript	974875	976581	.	-	.	seqedit=false;p_id=P3852;gene_id=YGR241C;tss_id=TSS3352;nbOverlaps=0;ID=YGR241C;Name=YAP1802
VII	S-MART	transcript	976415	976723	.	+	.	seqedit=false;p_id=P3181;gene_id=YGR242W;tss_id=TSS5937;nbOverlaps=0;ID=YGR242W;Name=YGR242W
VII	S-MART	transcript	978036	979319	.	-	.	seqedit=false;p_id=P1913;gene_id=YGR244C;tss_id=TSS6639;nbOverlaps=0;ID=YGR244C;Name=LSC2
VII	S-MART	transcript	979765	982068	.	-	.	seqedit=false;p_id=P6188;gene_id=YGR245C;tss_id=TSS4173;nbOverlaps=0;ID=YGR245C;Name=SDA1
VII	S-MART	transcript	982482	984272	.	-	.	seqedit=false;p_id=P5867;gene_id=YGR246C;tss_id=TSS1524;nbOverlaps=0;ID=YGR246C;Name=BRF1
VII	S-MART	transcript	984966	985685	.	+	.	seqedit=false;p_id=P5367;gene_id=YGR247W;tss_id=TSS1130;nbOverlaps=0;ID=YGR247W;Name=CPD1
VII	S-MART	transcript	985972	986739	.	+	.	seqedit=false;p_id=P5855;gene_id=YGR248W;tss_id=TSS6326;nbOverlaps=0;ID=YGR248W;Name=SOL4
VII	S-MART	transcript	988049	989419	.	+	.	seqedit=false;p_id=P5823;gene_id=YGR249W;tss_id=TSS1290;nbOverlaps=0;ID=YGR249W;Name=MGA1
XI	S-MART	transcript	341312	342373	.	+	.	seqedit=false;p_id=P3323;gene_id=YKL051W;tss_id=TSS6629;nbOverlaps=0;ID=YKL051W;Name=SFK1
XI	S-MART	transcript	342852	345620	.	-	.	seqedit=false;p_id=P5366;gene_id=YKL050C;tss_id=TSS6225;nbOverlaps=0;ID=YKL050C;Name=YKL050C
VII	S-MART	transcript	996869	998188	.	+	.	seqedit=false;p_id=P3198;gene_id=YGR252W;tss_id=TSS394;nbOverlaps=0;ID=YGR252W;Name=GCN5
VII	S-MART	transcript	998358	999140	.	-	.	seqedit=false;p_id=P2172;gene_id=YGR253C;tss_id=TSS6333;nbOverlaps=0;ID=YGR253C;Name=PUP2
VII	S-MART	transcript	1000927	1002240	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:4746:1418#0--HWUSI-EAS1656_0009_FC:3:8:5270:2275#0--HWUSI-EAS1656_0009_FC;p_id=P2084;gene_id=YGR254W;tss_id=TSS2737;nbOverlaps=14860;ID=YGR254W;Name=ENO1
VII	S-MART	transcript	1002523	1003962	.	-	.	seqedit=false;p_id=P5101;gene_id=YGR255C;tss_id=TSS2617;nbOverlaps=0;ID=YGR255C;Name=COQ6
VII	S-MART	transcript	1004624	1006102	.	+	.	seqedit=false;p_id=P1150;gene_id=YGR256W;tss_id=TSS630;nbOverlaps=0;ID=YGR256W;Name=GND2
VII	S-MART	transcript	1006205	1007305	.	-	.	seqedit=false;p_id=P690;gene_id=YGR257C;tss_id=TSS6981;nbOverlaps=0;ID=YGR257C;Name=MTM1
VII	S-MART	transcript	1007671	1010766	.	-	.	seqedit=false;p_id=P1609;gene_id=YGR258C;tss_id=TSS5244;nbOverlaps=0;ID=YGR258C;Name=RAD2
VII	S-MART	transcript	1012485	1014089	.	+	.	seqedit=false;p_id=P3889;gene_id=YGR260W;tss_id=TSS1872;nbOverlaps=0;ID=YGR260W;Name=TNA1
VII	S-MART	transcript	1012481	1012921	.	-	.	seqedit=false;p_id=P1670;gene_id=YGR259C;tss_id=TSS3548;nbOverlaps=0;ID=YGR259C;Name=YGR259C
XI	S-MART	transcript	326408	327487	.	-	.	seqedit=false;p_id=P3432;gene_id=YKL060C;tss_id=TSS3299;nbOverlaps=0;ID=YKL060C;Name=FBA1
XI	S-MART	transcript	325771	326112	.	+	.	seqedit=false;p_id=P890;gene_id=YKL061W;tss_id=TSS2223;nbOverlaps=0;ID=YKL061W;Name=BLI1
XI	S-MART	transcript	323228	325120	.	+	.	seqedit=false;p_id=P6329;gene_id=YKL062W;tss_id=TSS4419;nbOverlaps=0;ID=YKL062W;Name=MSN4
XI	S-MART	transcript	317764	320673	.	+	.	seqedit=false;p_id=P1156;gene_id=YKL064W;tss_id=TSS4784;nbOverlaps=0;ID=YKL064W;Name=MNR2
VII	S-MART	transcript	1025004	1025735	.	-	.	seqedit=false;p_id=P5681;gene_id=YGR267C;tss_id=TSS3825;nbOverlaps=0;ID=YGR267C;Name=FOL2
XI	S-MART	transcript	316437	317057	.	-	.	seqedit=false;p_id=P898;gene_id=YKL065C;tss_id=TSS1115;nbOverlaps=0;ID=YKL065C;Name=YET1
XI	S-MART	transcript	315954	316175	.	+	.	seqedit=false;p_id=P2623;gene_id=YKL065W-A;tss_id=TSS1396;nbOverlaps=0;ID=YKL065W-A;Name=YKL065W-A
XI	S-MART	transcript	314812	315273	.	+	.	seqedit=false;p_id=P3484;gene_id=YKL067W;tss_id=TSS4932;nbOverlaps=0;ID=YKL067W;Name=YNK1
XVI	S-MART	transcript	289669	291051	.	-	.	seqedit=false;p_id=P5729;gene_id=YPL139C;tss_id=TSS6668;nbOverlaps=0;ID=YPL139C;Name=UME1
XI	S-MART	transcript	315281	315724	.	+	.	seqedit=false;p_id=P6105;gene_id=YKL066W;tss_id=TSS285;nbOverlaps=0;ID=YKL066W;Name=YKL066W
VII	S-MART	transcript	1026636	1026962	.	+	.	seqedit=false;p_id=P4089;gene_id=YGR269W;tss_id=TSS4249;nbOverlaps=0;ID=YGR269W;Name=YGR269W
IX	S-MART	transcript	422074	422865	.	-	.	seqedit=false;p_id=P5035;gene_id=YIR036C;tss_id=TSS2745;nbOverlaps=0;ID=YIR036C;Name=IRC24
XIII	S-MART	transcript	298311	298391	.	+	.	seqedit=false;p_id=P44;gene_id=YMR013W-A;tss_id=TSS4714;nbOverlaps=0;ID=YMR013W-A;Name=YMR013W-A
XIII	S-MART	transcript	298868	300427	.	+	.	seqedit=false;p_id=P1406;gene_id=YMR014W;tss_id=TSS5510;nbOverlaps=0;ID=YMR014W;Name=BUD22
XIII	S-MART	transcript	300869	302485	.	-	.	seqedit=false;p_id=P316;gene_id=YMR015C;tss_id=TSS5113;nbOverlaps=0;ID=YMR015C;Name=ERG5
XIII	S-MART	transcript	303236	305593	.	-	.	seqedit=false;p_id=P4288;gene_id=YMR016C;tss_id=TSS4296;nbOverlaps=0;ID=YMR016C;Name=SOK2
XIII	S-MART	transcript	307489	308682	.	+	.	seqedit=false;p_id=P5378;gene_id=YMR017W;tss_id=TSS6908;nbOverlaps=0;ID=YMR017W;Name=SPO20
XIII	S-MART	transcript	312156	315005	.	+	.	seqedit=false;p_id=P6577;gene_id=YMR019W;tss_id=TSS922;nbOverlaps=0;ID=YMR019W;Name=STB4
XIII	S-MART	transcript	310208	311752	.	+	.	seqedit=false;p_id=P1733;gene_id=YMR018W;tss_id=TSS2254;nbOverlaps=0;ID=YMR018W;Name=YMR018W
XVI	S-MART	transcript	741438	742064	.	-	.	seqedit=false;p_id=P1732;gene_id=YPR107C;tss_id=TSS6883;nbOverlaps=0;ID=YPR107C;Name=YTH1
XV	S-MART	transcript	632164	633120	.	+	.	seqedit=false;p_id=P4345;gene_id=YOR158W;tss_id=TSS3922;nbOverlaps=0;ID=YOR158W;Name=PET123
XIII	S-MART	transcript	315377	316903	.	+	.	seqedit=false;p_id=P6544;gene_id=YMR020W;tss_id=TSS99;nbOverlaps=0;ID=YMR020W;Name=FMS1
XIII	S-MART	transcript	317165	318418	.	-	.	seqedit=false;p_id=P3531;gene_id=YMR021C;tss_id=TSS2731;nbOverlaps=0;ID=YMR021C;Name=MAC1
XIII	S-MART	transcript	318680	319177	.	+	.	seqedit=false;p_id=P1570;gene_id=YMR022W;tss_id=TSS2571;nbOverlaps=0;ID=YMR022W;Name=UBC7
XIII	S-MART	transcript	319437	321017	.	-	.	seqedit=false;p_id=P3993;gene_id=YMR023C;tss_id=TSS6818;nbOverlaps=0;ID=YMR023C;Name=MSS1
XIII	S-MART	transcript	321875	323047	.	+	.	seqedit=false;p_id=P1741;gene_id=YMR024W;tss_id=TSS482;nbOverlaps=0;ID=YMR024W;Name=MRPL3
XIII	S-MART	transcript	323300	324187	.	+	.	seqedit=false;p_id=P1979;gene_id=YMR025W;tss_id=TSS927;nbOverlaps=0;ID=YMR025W;Name=CSI1
XVI	S-MART	transcript	742454	743743	.	+	.	seqedit=false;p_id=P5031;gene_id=YPR108W;tss_id=TSS3876;nbOverlaps=0;ID=YPR108W;Name=RPN7
XIII	S-MART	transcript	324236	325435	.	-	.	seqedit=false;p_id=P1361;gene_id=YMR026C;tss_id=TSS144;nbOverlaps=0;ID=YMR026C;Name=PEX12
XIII	S-MART	transcript	327482	328582	.	+	.	seqedit=false;p_id=P550;gene_id=YMR028W;tss_id=TSS6065;nbOverlaps=0;ID=YMR028W;Name=TAP42
XIII	S-MART	transcript	325877	327289	.	+	.	seqedit=false;p_id=P3909;gene_id=YMR027W;tss_id=TSS1455;nbOverlaps=0;ID=YMR027W;Name=YMR027W
XIII	S-MART	transcript	328660	330231	.	-	.	seqedit=false;p_id=P702;gene_id=YMR029C;tss_id=TSS5921;nbOverlaps=0;ID=YMR029C;Name=FAR8
XIII	S-MART	transcript	330793	331923	.	+	.	seqedit=false;p_id=P759;gene_id=YMR030W;tss_id=TSS5459;nbOverlaps=0;ID=YMR030W;Name=RSF1
XIII	S-MART	transcript	337313	337603	.	+	.	seqedit=false;p_id=P4215;gene_id=YMR030W-A;tss_id=TSS3412;nbOverlaps=0;ID=YMR030W-A;Name=YMR030W-A
XVI	S-MART	transcript	744175	744387	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:12762:11255#0--HWUSI-EAS1656_0009_FC:3:105:2987:16080#0--HWUSI-EAS1656_0;p_id=P5504;gene_id=YPR108W-A;tss_id=TSS4760;nbOverlaps=9;ID=YPR108W-A;Name=YPR108W-A
XIII	S-MART	transcript	332212	334743	.	-	.	seqedit=false;p_id=P4837;gene_id=YMR031C;tss_id=TSS6268;nbOverlaps=0;ID=YMR031C;Name=EIS1
XIII	S-MART	transcript	334709	335035	.	+	.	seqedit=false;p_id=P6585;gene_id=YMR031W-A;tss_id=TSS4255;nbOverlaps=0;ID=YMR031W-A;Name=YMR031W-A
XIII	S-MART	transcript	335298	337307	.	+	.	seqedit=false;p_id=P4941;gene_id=YMR032W;tss_id=TSS5711;nbOverlaps=0;ID=YMR032W;Name=HOF1
XIII	S-MART	transcript	337788	339277	.	+	.	seqedit=false;p_id=P6417;gene_id=YMR033W;tss_id=TSS5242;nbOverlaps=0;ID=YMR033W;Name=ARP9
XIII	S-MART	exon	337788	337817	.	+	.	ID=YMR033W-exon1;Name=ARP9-exon1;Parent=YMR033W
XIII	S-MART	exon	337904	339277	.	+	.	ID=YMR033W-exon2;Name=ARP9-exon2;Parent=YMR033W
XVI	S-MART	transcript	745828	746835	.	-	.	seqedit=false;p_id=P644;gene_id=YPR110C;tss_id=TSS2697;nbOverlaps=0;ID=YPR110C;Name=RPC40
XIII	S-MART	transcript	341142	341675	.	+	.	seqedit=false;p_id=P3337;gene_id=YMR035W;tss_id=TSS547;nbOverlaps=0;ID=YMR035W;Name=IMP2
XIII	S-MART	transcript	339418	340722	.	-	.	seqedit=false;p_id=P2064;gene_id=YMR034C;tss_id=TSS2596;nbOverlaps=0;ID=YMR034C;Name=YMR034C
XIII	S-MART	transcript	341856	343520	.	-	.	seqedit=false;p_id=P2129;gene_id=YMR036C;tss_id=TSS3780;nbOverlaps=0;ID=YMR036C;Name=MIH1
XIV	S-MART	transcript	264926	266530	.	-	.	seqedit=false;p_id=P2231;gene_id=YNL199C;tss_id=TSS390;nbOverlaps=0;ID=YNL199C;Name=GCR2
XIII	S-MART	transcript	344403	346517	.	-	.	seqedit=false;p_id=P2652;gene_id=YMR037C;tss_id=TSS1513;nbOverlaps=0;ID=YMR037C;Name=MSN2
XIII	S-MART	transcript	347511	348260	.	-	.	seqedit=false;p_id=P792;gene_id=YMR038C;tss_id=TSS4827;nbOverlaps=0;ID=YMR038C;Name=CCS1
XIII	S-MART	transcript	348644	349522	.	-	.	seqedit=false;p_id=P2456;gene_id=YMR039C;tss_id=TSS878;nbOverlaps=0;ID=YMR039C;Name=SUB1
XVI	S-MART	transcript	744689	745573	.	+	.	seqedit=false;p_id=P2814;gene_id=YPR109W;tss_id=TSS6784;nbOverlaps=0;ID=YPR109W;Name=YPR109W
XIII	S-MART	transcript	350381	350863	.	+	.	seqedit=false;p_id=P3762;gene_id=YMR040W;tss_id=TSS2605;nbOverlaps=0;ID=YMR040W;Name=YET2
XIII	S-MART	transcript	350966	351973	.	-	.	seqedit=false;p_id=P4402;gene_id=YMR041C;tss_id=TSS4518;nbOverlaps=0;ID=YMR041C;Name=ARA2
XIII	S-MART	transcript	352603	353136	.	+	.	seqedit=false;p_id=P2168;gene_id=YMR042W;tss_id=TSS6265;nbOverlaps=0;ID=YMR042W;Name=ARG80
XIII	S-MART	transcript	353871	354731	.	+	.	seqedit=false;p_id=P4574;gene_id=YMR043W;tss_id=TSS6553;nbOverlaps=0;ID=YMR043W;Name=MCM1
XIII	S-MART	transcript	355384	356811	.	+	.	seqedit=false;p_id=P1109;gene_id=YMR044W;tss_id=TSS2445;nbOverlaps=0;ID=YMR044W;Name=IOC4
XIII	S-MART	transcript	362702	362830	.	+	.	seqedit=false;p_id=P6021;gene_id=YMR046W-A;tss_id=TSS2461;nbOverlaps=0;ID=YMR046W-A;Name=YMR046W-A
XVI	S-MART	transcript	747306	749000	.	+	.	seqedit=false;p_id=P1892;gene_id=YPR111W;tss_id=TSS6918;nbOverlaps=0;ID=YPR111W;Name=DBF20
XIII	S-MART	transcript	357359	362627	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P1568;gene_id=YMR045C;tss_id=TSS5891;nbOverlaps=454;ID=YMR045C;Name=YMR045C
XIII	S-MART	exon	357359	361321	.	-	.	ID=YMR045C-exon1;Name=YMR045C-exon1;Parent=YMR045C
XIII	S-MART	exon	361323	362627	.	-	.	ID=YMR045C-exon2;Name=YMR045C-exon2;Parent=YMR045C
XIII	S-MART	transcript	361305	362627	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009_FC:3:15:9777:20932#0;p_id=P4155;gene_id=YMR046C;tss_id=TSS5891;nbOverlaps=2;ID=YMR046C;Name=YMR046C
XIII	S-MART	transcript	363364	366705	.	-	.	seqedit=false;p_id=P5399;gene_id=YMR047C;tss_id=TSS6282;nbOverlaps=0;ID=YMR047C;Name=NUP116
XIII	S-MART	transcript	366981	367934	.	+	.	seqedit=false;p_id=P5136;gene_id=YMR048W;tss_id=TSS4557;nbOverlaps=0;ID=YMR048W;Name=CSM3
XVI	S-MART	transcript	749256	751919	.	-	.	seqedit=false;p_id=P1564;gene_id=YPR112C;tss_id=TSS4248;nbOverlaps=0;ID=YPR112C;Name=MRD1
XIII	S-MART	transcript	368094	370517	.	-	.	seqedit=false;p_id=P2878;gene_id=YMR049C;tss_id=TSS4199;nbOverlaps=0;ID=YMR049C;Name=ERB1
XIII	S-MART	transcript	380069	380434	.	-	.	seqedit=false;p_id=P5129;gene_id=YMR052C-A;tss_id=TSS693;nbOverlaps=0;ID=YMR052C-A;Name=YMR052C-A
XIII	S-MART	transcript	373057	378325	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P6225;gene_id=YMR050C;tss_id=TSS4736;nbOverlaps=487;ID=YMR050C;Name=YMR050C
XIII	S-MART	exon	373057	377019	.	-	.	ID=YMR050C-exon1;Name=YMR050C-exon1;Parent=YMR050C
XIII	S-MART	exon	377021	378325	.	-	.	ID=YMR050C-exon2;Name=YMR050C-exon2;Parent=YMR050C
XIII	S-MART	transcript	377003	378325	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P3548;gene_id=YMR051C;tss_id=TSS4736;nbOverlaps=12;ID=YMR051C;Name=YMR051C
XVI	S-MART	transcript	752257	752919	.	+	.	seqedit=false;p_id=P3242;gene_id=YPR113W;tss_id=TSS6920;nbOverlaps=0;ID=YPR113W;Name=PIS1
XIII	S-MART	transcript	379586	380200	.	+	.	seqedit=false;p_id=P3609;gene_id=YMR052W;tss_id=TSS949;nbOverlaps=0;ID=YMR052W;Name=FAR3
XIII	S-MART	transcript	380346	382898	.	-	.	seqedit=false;p_id=P5988;gene_id=YMR053C;tss_id=TSS7014;nbOverlaps=0;ID=YMR053C;Name=STB2
XIII	S-MART	transcript	383303	385975	.	+	.	seqedit=false;p_id=P490;gene_id=YMR054W;tss_id=TSS4647;nbOverlaps=0;ID=YMR054W;Name=STV1
XIII	S-MART	transcript	386101	387021	.	-	.	seqedit=false;p_id=P6174;gene_id=YMR055C;tss_id=TSS1622;nbOverlaps=0;ID=YMR055C;Name=BUB2
XIII	S-MART	transcript	387315	388244	.	-	.	seqedit=false;p_id=P6189;gene_id=YMR056C;tss_id=TSS5133;nbOverlaps=0;ID=YMR056C;Name=AAC1
XIII	S-MART	transcript	388822	390732	.	+	.	seqedit=false;p_id=P689;gene_id=YMR058W;tss_id=TSS2836;nbOverlaps=0;ID=YMR058W;Name=FET3
XVI	S-MART	transcript	754877	758128	.	+	.	seqedit=false;p_id=P377;gene_id=YPR115W;tss_id=TSS700;nbOverlaps=0;ID=YPR115W;Name=RGC1
XIII	S-MART	transcript	388359	388730	.	-	.	seqedit=false;p_id=P2993;gene_id=YMR057C;tss_id=TSS5378;nbOverlaps=0;ID=YMR057C;Name=YMR057C
XIII	S-MART	transcript	391099	391485	.	+	.	seqedit=false;p_id=P3724;gene_id=YMR059W;tss_id=TSS2418;nbOverlaps=0;ID=YMR059W;Name=SEN15
XIII	S-MART	transcript	391532	392515	.	-	.	seqedit=false;p_id=P2403;gene_id=YMR060C;tss_id=TSS4374;nbOverlaps=0;ID=YMR060C;Name=SAM37
XIII	S-MART	transcript	392755	394788	.	+	.	seqedit=false;p_id=P4609;gene_id=YMR061W;tss_id=TSS3673;nbOverlaps=0;ID=YMR061W;Name=RNA14
XIII	S-MART	transcript	395054	396379	.	-	.	seqedit=false;p_id=P5201;gene_id=YMR062C;tss_id=TSS4806;nbOverlaps=0;ID=YMR062C;Name=ARG7
XIII	S-MART	transcript	397077	397796	.	+	.	seqedit=false;p_id=P1316;gene_id=YMR063W;tss_id=TSS5256;nbOverlaps=0;ID=YMR063W;Name=RIM9
XVI	S-MART	transcript	753301	754248	.	+	.	seqedit=false;p_id=P4222;gene_id=YPR114W;tss_id=TSS4356;nbOverlaps=0;ID=YPR114W;Name=YPR114W
XIII	S-MART	transcript	397903	399459	.	+	.	seqedit=false;p_id=P6657;gene_id=YMR064W;tss_id=TSS1129;nbOverlaps=0;ID=YMR064W;Name=AEP1
XIII	S-MART	transcript	399702	401216	.	+	.	seqedit=false;p_id=P783;gene_id=YMR065W;tss_id=TSS6806;nbOverlaps=0;ID=YMR065W;Name=KAR5
XVI	S-MART	transcript	758648	759481	.	+	.	seqedit=false;p_id=P6668;gene_id=YPR116W;tss_id=TSS3601;nbOverlaps=0;ID=YPR116W;Name=RRG8
XVI	S-MART	transcript	627880	631245	.	+	.	seqedit=false;p_id=P32;gene_id=YPR030W;tss_id=TSS4099;nbOverlaps=0;ID=YPR030W;Name=CSR2
XVI	S-MART	transcript	767752	768987	.	+	.	seqedit=false;p_id=P3113;gene_id=YPR118W;tss_id=TSS955;nbOverlaps=0;ID=YPR118W;Name=MRI1
XVI	S-MART	transcript	760025	767494	.	+	.	seqedit=false;p_id=P5906;gene_id=YPR117W;tss_id=TSS4661;nbOverlaps=0;ID=YPR117W;Name=YPR117W
XVI	S-MART	transcript	771653	773128	.	+	.	seqedit=false;p_id=P2719;gene_id=YPR119W;tss_id=TSS6129;nbOverlaps=0;ID=YPR119W;Name=CLB2
IX	S-MART	transcript	423128	423619	.	+	.	seqedit=false;p_id=P3445;gene_id=YIR037W;tss_id=TSS4968;nbOverlaps=0;ID=YIR037W;Name=HYR1
XVI	S-MART	transcript	773875	775182	.	-	.	seqedit=false;p_id=P5182;gene_id=YPR120C;tss_id=TSS6115;nbOverlaps=0;ID=YPR120C;Name=CLB5
XVI	S-MART	transcript	778583	780301	.	+	.	seqedit=false;p_id=P880;gene_id=YPR121W;tss_id=TSS23;nbOverlaps=0;ID=YPR121W;Name=THI22
XV	S-MART	transcript	636939	638558	.	-	.	seqedit=false;p_id=P5566;gene_id=YOR161C;tss_id=TSS2822;nbOverlaps=0;ID=YOR161C;Name=PNS1
XVI	S-MART	transcript	631515	633761	.	+	.	seqedit=false;p_id=P1238;gene_id=YPR031W;tss_id=TSS4225;nbOverlaps=0;ID=YPR031W;Name=NTO1
XVI	S-MART	transcript	782045	785671	.	+	.	seqedit=false;p_id=P6284;gene_id=YPR122W;tss_id=TSS3681;nbOverlaps=0;ID=YPR122W;Name=AXL1
XVI	S-MART	transcript	786208	787428	.	+	.	seqedit=false;p_id=P611;gene_id=YPR124W;tss_id=TSS1825;nbOverlaps=0;ID=YPR124W;Name=CTR1
XVI	S-MART	transcript	786141	786575	.	-	.	seqedit=false;p_id=P3594;gene_id=YPR123C;tss_id=TSS6003;nbOverlaps=0;ID=YPR123C;Name=YPR123C
IX	S-MART	transcript	423809	424513	.	-	.	seqedit=false;p_id=P6570;gene_id=YIR038C;tss_id=TSS398;nbOverlaps=0;ID=YIR038C;Name=GTT1
XVI	S-MART	transcript	787961	789325	.	+	.	seqedit=false;p_id=P5904;gene_id=YPR125W;tss_id=TSS187;nbOverlaps=0;ID=YPR125W;Name=YLH47
XVI	S-MART	transcript	791218	792204	.	-	.	seqedit=false;p_id=P4169;gene_id=YPR128C;tss_id=TSS4338;nbOverlaps=0;ID=YPR128C;Name=ANT1
XV	S-MART	transcript	639121	639267	.	-	.	seqedit=false;p_id=P6631;gene_id=YOR161C-C;tss_id=TSS6051;nbOverlaps=0;ID=YOR161C-C;Name=YOR161C-C
XVI	S-MART	transcript	634123	637224	.	+	.	seqedit=false;p_id=P3250;gene_id=YPR032W;tss_id=TSS2383;nbOverlaps=0;ID=YPR032W;Name=SRO7
XVI	S-MART	transcript	789077	789385	.	-	.	seqedit=false;p_id=P1478;gene_id=YPR126C;tss_id=TSS2414;nbOverlaps=0;ID=YPR126C;Name=YPR126C
XVI	S-MART	transcript	790083	791120	.	+	.	seqedit=false;p_id=P3544;gene_id=YPR127W;tss_id=TSS962;nbOverlaps=0;ID=YPR127W;Name=YPR127W
XII	S-MART	transcript	683672	687202	.	-	.	seqedit=false;p_id=P4356;gene_id=YLR272C;tss_id=TSS2227;nbOverlaps=0;ID=YLR272C;Name=YCS4
XVI	S-MART	transcript	792687	793736	.	+	.	seqedit=false;p_id=P1286;gene_id=YPR129W;tss_id=TSS6741;nbOverlaps=0;ID=YPR129W;Name=SCD6
XIV	S-MART	transcript	259578	260456	.	+	.	seqedit=false;p_id=P2944;gene_id=YNL202W;tss_id=TSS5747;nbOverlaps=0;ID=YNL202W;Name=SPS19
IX	S-MART	transcript	430498	432111	.	-	.	seqedit=false;p_id=P3496;gene_id=YIR039C;tss_id=TSS1179;nbOverlaps=0;ID=YIR039C;Name=YPS6
XVI	S-MART	transcript	793911	794498	.	-	.	seqedit=false;p_id=P237;gene_id=YPR131C;tss_id=TSS5805;nbOverlaps=0;ID=YPR131C;Name=NAT3
XVI	S-MART	transcript	793374	793781	.	-	.	seqedit=false;p_id=P1154;gene_id=YPR130C;tss_id=TSS2450;nbOverlaps=0;ID=YPR130C;Name=YPR130C
XV	S-MART	transcript	637574	637654	.	+	.	seqedit=false;p_id=P3194;gene_id=YOR161W-A;tss_id=TSS5237;nbOverlaps=0;ID=YOR161W-A;Name=YOR161W-A
XVI	S-MART	transcript	637379	639019	.	-	.	seqedit=false;p_id=P2191;gene_id=YPR033C;tss_id=TSS1617;nbOverlaps=0;ID=YPR033C;Name=HTS1
XVI	S-MART	transcript	794965	795767	.	+	.	seqedit=false;p_id=P4835;gene_id=YPR132W;tss_id=TSS4774;nbOverlaps=0;ID=YPR132W;Name=RPS23B
XVI	S-MART	exon	794965	795029	.	+	.	ID=YPR132W-exon1;Name=RPS23B-exon1;Parent=YPR132W
XVI	S-MART	exon	795395	795767	.	+	.	ID=YPR132W-exon2;Name=RPS23B-exon2;Parent=YPR132W
XVI	S-MART	transcript	193648	194145	.	+	.	seqedit=false;p_id=P5237;gene_id=YPL187W;tss_id=TSS5174;nbOverlaps=0;ID=YPL187W;Name=MF(ALPHA)1
XII	S-MART	transcript	682737	683561	.	+	.	seqedit=false;p_id=P1143;gene_id=YLR271W;tss_id=TSS3941;nbOverlaps=0;ID=YLR271W;Name=YLR271W
XIV	S-MART	transcript	258375	259277	.	-	.	seqedit=false;p_id=P3018;gene_id=YNL204C;tss_id=TSS6179;nbOverlaps=0;ID=YNL204C;Name=SPS18
IX	S-MART	transcript	433929	434303	.	+	.	seqedit=false;p_id=P4530;gene_id=YIR041W;tss_id=TSS2800;nbOverlaps=0;ID=YIR041W;Name=PAU15
XVI	S-MART	transcript	795978	797210	.	-	.	seqedit=false;p_id=P821;gene_id=YPR133C;tss_id=TSS3863;nbOverlaps=0;ID=YPR133C;Name=SPN1
XVI	S-MART	transcript	797557	797709	.	+	.	seqedit=false;p_id=P2721;gene_id=YPR133W-A;tss_id=TSS1298;nbOverlaps=0;ID=YPR133W-A;Name=TOM5
XV	S-MART	transcript	637975	638235	.	+	.	seqedit=false;p_id=P4167;gene_id=YOR161W-B;tss_id=TSS6801;nbOverlaps=0;ID=YOR161W-B;Name=YOR161W-B
XIII	S-MART	transcript	599352	600872	.	-	.	seqedit=false;p_id=P3331;gene_id=YMR169C;tss_id=TSS1680;nbOverlaps=0;ID=YMR169C;Name=ALD3
XVI	S-MART	transcript	639525	640958	.	+	.	seqedit=false;p_id=P828;gene_id=YPR034W;tss_id=TSS4241;nbOverlaps=0;ID=YPR034W;Name=ARP7
XVI	S-MART	transcript	798051	798857	.	+	.	seqedit=false;p_id=P4661;gene_id=YPR134W;tss_id=TSS6170;nbOverlaps=0;ID=YPR134W;Name=MSS18
XII	S-MART	transcript	689083	691029	.	-	.	seqedit=false;p_id=P3652;gene_id=YLR273C;tss_id=TSS4742;nbOverlaps=0;ID=YLR273C;Name=PIG1
XVI	S-MART	transcript	280480	280926	.	+	.	seqedit=false;p_id=P1847;gene_id=YPL144W;tss_id=TSS3151;nbOverlaps=0;ID=YPL144W;Name=POC4
XIV	S-MART	transcript	259439	260050	.	-	.	seqedit=false;p_id=P4384;gene_id=YNL203C;tss_id=TSS561;nbOverlaps=0;ID=YNL203C;Name=YNL203C
IX	S-MART	transcript	433389	433721	.	-	.	seqedit=false;p_id=P2567;gene_id=YIR040C;tss_id=TSS6114;nbOverlaps=0;ID=YIR040C;Name=YIR040C
XVI	S-MART	transcript	802325	802837	.	-	.	seqedit=false;p_id=P2724;gene_id=YPR136C;tss_id=TSS4344;nbOverlaps=0;ID=YPR136C;Name=YPR136C
XVI	S-MART	transcript	805001	810269	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P2756;gene_id=YPR137C-B;tss_id=TSS5470;nbOverlaps=37;ID=YPR137C-B;Name=YPR137C-B
XVI	S-MART	exon	805001	808963	.	-	.	ID=YPR137C-B-exon1;Name=YPR137C-B-exon1;Parent=YPR137C-B
XVI	S-MART	exon	808965	810269	.	-	.	ID=YPR137C-B-exon2;Name=YPR137C-B-exon2;Parent=YPR137C-B
XV	S-MART	transcript	639560	641992	.	-	.	seqedit=false;p_id=P1763;gene_id=YOR162C;tss_id=TSS5092;nbOverlaps=0;ID=YOR162C;Name=YRR1
XVI	S-MART	transcript	642208	643320	.	+	.	seqedit=false;p_id=P3122;gene_id=YPR035W;tss_id=TSS34;nbOverlaps=0;ID=YPR035W;Name=GLN1
XVI	S-MART	transcript	560198	560289	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)P1;tss_id=TSS5068;nbOverlaps=184;ID=tF(GAA)P1;Name=tF(GAA)P1
XVI	S-MART	exon	560198	560233	.	-	.	ID=tF(GAA)P1-exon1;Name=tF(GAA)P1-exon1;Parent=tF(GAA)P1
XVI	S-MART	exon	560253	560289	.	-	.	ID=tF(GAA)P1-exon2;Name=tF(GAA)P1-exon2;Parent=tF(GAA)P1
XVI	S-MART	transcript	802359	804080	.	+	.	seqedit=false;p_id=P2493;gene_id=YPR137W;tss_id=TSS2064;nbOverlaps=0;ID=YPR137W;Name=RRP9
XVI	S-MART	transcript	278395	279699	.	-	.	seqedit=false;p_id=P6078;gene_id=YPL145C;tss_id=TSS6264;nbOverlaps=0;ID=YPL145C;Name=KES1
XIV	S-MART	transcript	256788	258155	.	-	.	seqedit=false;p_id=P247;gene_id=YNL206C;tss_id=TSS2307;nbOverlaps=0;ID=YNL206C;Name=RTT106
X	S-MART	transcript	435163	435926	.	+	.	seqedit=false;p_id=P3062;gene_id=YJL001W;tss_id=TSS4543;nbOverlaps=0;ID=YJL001W;Name=PRE3
X	S-MART	exon	435163	435227	.	+	.	ID=YJL001W-exon1;Name=PRE3-exon1;Parent=YJL001W
X	S-MART	exon	435344	435926	.	+	.	ID=YJL001W-exon2;Name=PRE3-exon2;Parent=YJL001W
XVI	S-MART	transcript	810984	812453	.	-	.	seqedit=false;p_id=P5243;gene_id=YPR138C;tss_id=TSS4323;nbOverlaps=0;ID=YPR138C;Name=MEP3
XVI	S-MART	transcript	813156	814058	.	-	.	seqedit=false;p_id=P4396;gene_id=YPR139C;tss_id=TSS5483;nbOverlaps=0;ID=YPR139C;Name=VPS66
XV	S-MART	transcript	642741	643307	.	+	.	seqedit=false;p_id=P4039;gene_id=YOR163W;tss_id=TSS2568;nbOverlaps=0;ID=YOR163W;Name=DDP1
XVI	S-MART	transcript	643836	645272	.	+	.	seqedit=false;p_id=P2325;gene_id=YPR036W;tss_id=TSS2120;nbOverlaps=0;ID=YPR036W;Name=VMA13
XVI	S-MART	transcript	814391	815536	.	+	.	seqedit=false;p_id=P5050;gene_id=YPR140W;tss_id=TSS5792;nbOverlaps=0;ID=YPR140W;Name=TAZ1
XVI	S-MART	transcript	815734	817923	.	-	.	seqedit=false;p_id=P4644;gene_id=YPR141C;tss_id=TSS2226;nbOverlaps=0;ID=YPR141C;Name=KAR3
XVI	S-MART	transcript	818323	819075	.	+	.	seqedit=false;p_id=P4725;gene_id=YPR143W;tss_id=TSS1581;nbOverlaps=0;ID=YPR143W;Name=RRP15
XVI	S-MART	transcript	276162	277529	.	-	.	seqedit=false;p_id=P3435;gene_id=YPL146C;tss_id=TSS6566;nbOverlaps=0;ID=YPL146C;Name=NOP53
XIV	S-MART	transcript	258155	258577	.	-	.	seqedit=false;p_id=P2470;gene_id=YNL205C;tss_id=TSS5542;nbOverlaps=0;ID=YNL205C;Name=YNL205C
XVI	S-MART	transcript	818130	818693	.	-	.	seqedit=false;p_id=P281;gene_id=YPR142C;tss_id=TSS2126;nbOverlaps=0;ID=YPR142C;Name=YPR142C
XVI	S-MART	transcript	819765	821423	.	-	.	seqedit=false;p_id=P2462;gene_id=YPR144C;tss_id=TSS5905;nbOverlaps=0;ID=YPR144C;Name=NOC4
XV	S-MART	transcript	643394	644332	.	-	.	seqedit=false;p_id=P4634;gene_id=YOR164C;tss_id=TSS3909;nbOverlaps=0;ID=YOR164C;Name=GET4
XVI	S-MART	transcript	645950	646153	.	+	.	seqedit=false;p_id=P99;gene_id=YPR036W-A;tss_id=TSS594;nbOverlaps=0;ID=YPR036W-A;Name=YPR036W-A
XVI	S-MART	transcript	824690	824926	.	-	.	seqedit=false;p_id=P3398;gene_id=YPR145C-A;tss_id=TSS5844;nbOverlaps=0;ID=YPR145C-A;Name=YPR145C-A
XVI	S-MART	transcript	822620	824338	.	+	.	seqedit=false;p_id=P2407;gene_id=YPR145W;tss_id=TSS2953;nbOverlaps=0;ID=YPR145W;Name=ASN1
XVI	S-MART	transcript	829918	830439	.	+	.	seqedit=false;p_id=P3842;gene_id=YPR149W;tss_id=TSS6667;nbOverlaps=0;ID=YPR149W;Name=NCE102
XVI	S-MART	transcript	273255	275867	.	+	.	seqedit=false;p_id=P2421;gene_id=YPL147W;tss_id=TSS2483;nbOverlaps=0;ID=YPL147W;Name=PXA1
XIV	S-MART	transcript	255353	256630	.	+	.	seqedit=false;p_id=P5684;gene_id=YNL207W;tss_id=TSS2686;nbOverlaps=0;ID=YNL207W;Name=RIO2
XVI	S-MART	transcript	825347	825676	.	-	.	seqedit=false;p_id=P1136;gene_id=YPR146C;tss_id=TSS221;nbOverlaps=0;ID=YPR146C;Name=YPR146C
Mito	S-MART	transcript	77431	77505	.	+	.	seqedit=false;gene_id=tF(GAA)Q;tss_id=TSS6533;nbOverlaps=0;ID=tF(GAA)Q;Name=tF(GAA)Q
XV	S-MART	transcript	644566	646896	.	+	.	seqedit=false;p_id=P4641;gene_id=YOR165W;tss_id=TSS5657;nbOverlaps=0;ID=YOR165W;Name=SEY1
XVI	S-MART	transcript	646448	647038	.	-	.	seqedit=false;p_id=P1215;gene_id=YPR037C;tss_id=TSS4343;nbOverlaps=0;ID=YPR037C;Name=ERV2
XV	S-MART	transcript	594354	594425	.	-	.	seqedit=false;gene_id=tG(CCC)O;tss_id=TSS2166;nbOverlaps=0;ID=tG(CCC)O;Name=SUF5
XVI	S-MART	transcript	831055	831675	.	-	.	seqedit=false;p_id=P516;gene_id=YPR151C;tss_id=TSS2146;nbOverlaps=0;ID=YPR151C;Name=SUE1
XVI	S-MART	transcript	830999	831520	.	+	.	seqedit=false;p_id=P2207;gene_id=YPR150W;tss_id=TSS3569;nbOverlaps=0;ID=YPR150W;Name=YPR150W
XVI	S-MART	transcript	272294	272815	.	-	.	seqedit=false;p_id=P4041;gene_id=YPL148C;tss_id=TSS4217;nbOverlaps=0;ID=YPL148C;Name=PPT2
XIV	S-MART	transcript	252059	253900	.	+	.	seqedit=false;p_id=P4798;gene_id=YNL209W;tss_id=TSS2733;nbOverlaps=0;ID=YNL209W;Name=SSB2
IX	S-MART	transcript	437994	438179	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:28:3983:9004#0;gene_id=YIR044C;tss_id=TSS6484;nbOverlaps=1;ID=YIR044C;Name=YIR044C
XVI	S-MART	transcript	832061	833458	.	-	.	seqedit=false;p_id=P1987;gene_id=YPR152C;tss_id=TSS1446;nbOverlaps=0;ID=YPR152C;Name=URN1
XVI	S-MART	transcript	834565	835212	.	+	.	seqedit=false;p_id=P3826;gene_id=YPR154W;tss_id=TSS1729;nbOverlaps=0;ID=YPR154W;Name=PIN3
XVI	S-MART	transcript	646836	647195	.	+	.	seqedit=false;p_id=P4570;gene_id=YPR038W;tss_id=TSS741;nbOverlaps=0;ID=YPR038W;Name=IRC16
XVI	S-MART	transcript	833689	834245	.	+	.	seqedit=false;p_id=P4675;gene_id=YPR153W;tss_id=TSS3479;nbOverlaps=0;ID=YPR153W;Name=YPR153W
XVI	S-MART	exon	833689	833693	.	+	.	ID=YPR153W-exon1;Name=YPR153W-exon1;Parent=YPR153W
XVI	S-MART	exon	833828	834245	.	+	.	ID=YPR153W-exon2;Name=YPR153W-exon2;Parent=YPR153W
XVI	S-MART	transcript	259714	260931	.	-	.	seqedit=false;p_id=P1878;gene_id=YPL154C;tss_id=TSS1326;nbOverlaps=0;ID=YPL154C;Name=PEP4
V	S-MART	transcript	61890	61960	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:16181:12657#0--HWUSI-EAS1656_0009_FC:3:72:4445:9545#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)E;tss_id=TSS2858;nbOverlaps=173;ID=tG(GCC)E;Name=tG(GCC)E
VI	S-MART	transcript	180974	181044	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)F2;tss_id=TSS1325;nbOverlaps=109;ID=tG(GCC)F2;Name=tG(GCC)F2
XVI	S-MART	transcript	271310	272194	.	+	.	seqedit=false;p_id=P2193;gene_id=YPL149W;tss_id=TSS3475;nbOverlaps=0;ID=YPL149W;Name=ATG5
XIV	S-MART	transcript	254418	255017	.	+	.	seqedit=false;p_id=P2549;gene_id=YNL208W;tss_id=TSS5214;nbOverlaps=0;ID=YNL208W;Name=YNL208W
XVI	S-MART	transcript	835563	837413	.	-	.	seqedit=false;p_id=P2416;gene_id=YPR155C;tss_id=TSS6222;nbOverlaps=0;ID=YPR155C;Name=NCA2
XVI	S-MART	transcript	837909	839777	.	-	.	seqedit=false;p_id=P2503;gene_id=YPR156C;tss_id=TSS4834;nbOverlaps=0;ID=YPR156C;Name=TPO3
XVI	S-MART	transcript	647305	648375	.	+	.	seqedit=false;p_id=P4122;gene_id=YPR040W;tss_id=TSS4804;nbOverlaps=0;ID=YPR040W;Name=TIP41
XVI	S-MART	transcript	841266	842669	.	+	.	seqedit=false;p_id=P3481;gene_id=YPR157W;tss_id=TSS3581;nbOverlaps=0;ID=YPR157W;Name=TDA6
XVI	S-MART	transcript	854935	856257	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_000;p_id=P4109;gene_id=YPR158C-C;tss_id=TSS458;nbOverlaps=12;ID=YPR158C-C;Name=YPR158C-C
IV	S-MART	transcript	1525095	1525523	.	-	.	seqedit=false;p_id=P4701;gene_id=YDR544C;tss_id=TSS1700;nbOverlaps=0;ID=YDR544C;Name=YDR544C
IV	S-MART	transcript	1526321	1531711	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P3803;gene_id=YDR545W;tss_id=TSS6453;nbOverlaps=531;ID=YDR545W;Name=YRF1-1
V	S-MART	transcript	150301	150978	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:9393:16678#0--HWUSI-EAS1656_0009_FC:3:81:13108:17069#0--HWUSI-EAS1656_000;p_id=P6392;gene_id=YEL001C;tss_id=TSS2380;nbOverlaps=556;ID=YEL001C;Name=IRC22
V	S-MART	transcript	148722	150014	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:17053:2532#0--HWUSI-EAS1656_0009_FC:3:65:6112:9753#0--HWUSI-EAS1656_0009_;p_id=P909;gene_id=YEL002C;tss_id=TSS1508;nbOverlaps=2314;ID=YEL002C;Name=WBP1
XIV	S-MART	transcript	250931	251743	.	+	.	seqedit=false;p_id=P6109;gene_id=YNL210W;tss_id=TSS1507;nbOverlaps=0;ID=YNL210W;Name=MER1
V	S-MART	transcript	148176	148599	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:17809:5746#0--HWUSI-EAS1656_0009_FC:3:102:7218:4194#0--HWUSI-EAS1656_0009;p_id=P2381;gene_id=YEL003W;tss_id=TSS2065;nbOverlaps=167;ID=YEL003W;Name=GIM4
V	S-MART	exon	148176	148194	.	+	.	ID=YEL003W-exon1;Name=GIM4-exon1;Parent=YEL003W
V	S-MART	exon	148283	148599	.	+	.	ID=YEL003W-exon2;Name=GIM4-exon2;Parent=YEL003W
III	S-MART	transcript	15798	16880	.	-	.	seqedit=false;p_id=P1645;gene_id=YCL064C;tss_id=TSS1316;nbOverlaps=0;ID=YCL064C;Name=CHA1
III	S-MART	transcript	13282	13809	.	+	.	seqedit=false;p_id=P2154;gene_id=YCL066W;tss_id=TSS6256;nbOverlaps=0;ID=YCL066W;Name=HMLALPHA1
V	S-MART	transcript	146951	147979	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:9070:21031#0--HWUSI-EAS1656_0009_FC:3:110:18693:11492#0--HWUSI-EAS1656_000;p_id=P1006;gene_id=YEL004W;tss_id=TSS2825;nbOverlaps=23;ID=YEL004W;Name=YEA4
V	S-MART	transcript	145907	146755	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:111:2747:19181#0--HWUSI-EAS1656_0009_FC:3:24:10614:16289#0--HWUSI-EAS1656_00;p_id=P903;gene_id=YEL005C;tss_id=TSS6384;nbOverlaps=16;ID=YEL005C;Name=VAB2
V	S-MART	transcript	144327	145334	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:19427:19863#0--HWUSI-EAS1656_0009_FC:3:76:16203:19793#0--HWUSI-EAS1656_00;p_id=P4799;gene_id=YEL006W;tss_id=TSS4000;nbOverlaps=250;ID=YEL006W;Name=YEA6
V	S-MART	transcript	141892	143892	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:9356:10063#0--HWUSI-EAS1656_0009_FC:3:31:6967:19527#0--HWUSI-EAS1656_0009;p_id=P5958;gene_id=YEL007W;tss_id=TSS3924;nbOverlaps=84;ID=YEL007W;Name=MIT1
V	S-MART	transcript	140726	140818	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:5516:2543#0;p_id=P1641;gene_id=YEL008C-A;tss_id=TSS3114;nbOverlaps=1;ID=YEL008C-A;Name=YEL008C-A
V	S-MART	transcript	138918	139763	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:20:18003:12369#0--HWUSI-EAS1656_0009_FC:3:19:5614:7326#0--HWUSI-EAS1656_0009;p_id=P777;gene_id=YEL009C;tss_id=TSS4473;nbOverlaps=1600;ID=YEL009C;Name=GCN4
V	S-MART	transcript	140512	140892	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:117:15902:7485#0--HWUSI-EAS1656_0009_FC:3:82:1485:15236#0--HWUSI-EAS1656_000;p_id=P2157;gene_id=YEL008W;tss_id=TSS3311;nbOverlaps=8;ID=YEL008W;Name=YEL008W
III	S-MART	transcript	2126	2566	.	+	.	seqedit=false;gene_id=YCL075W;tss_id=TSS1414;nbOverlaps=0;ID=YCL075W;Name=YCL075W
V	S-MART	transcript	133120	135234	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:18415:4066#0--HWUSI-EAS1656_0009_FC:3:79:4868:8230#0--HWUSI-EAS1656_0009_;p_id=P3000;gene_id=YEL011W;tss_id=TSS2771;nbOverlaps=64;ID=YEL011W;Name=GLC3
V	S-MART	transcript	136279	136629	.	+	.	seqedit=false;p_id=P965;gene_id=YEL010W;tss_id=TSS835;nbOverlaps=0;ID=YEL010W;Name=YEL010W
V	S-MART	transcript	131772	132551	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:4262:4088#0--HWUSI-EAS1656_0009_FC:3:81:3023:2486#0--HWUSI-EAS1656_0009_F;p_id=P5765;gene_id=YEL012W;tss_id=TSS6435;nbOverlaps=21;ID=YEL012W;Name=UBC8
V	S-MART	exon	131772	131776	.	+	.	ID=YEL012W-exon1;Name=UBC8-exon1;Parent=YEL012W
V	S-MART	exon	131900	132551	.	+	.	ID=YEL012W-exon2;Name=UBC8-exon2;Parent=YEL012W
XVI	S-MART	transcript	647012	647347	.	+	.	seqedit=false;p_id=P4500;gene_id=YPR039W;tss_id=TSS6034;nbOverlaps=0;ID=YPR039W;Name=YPR039W
III	S-MART	transcript	119575	120318	.	-	.	seqedit=false;p_id=P4023;gene_id=YCR004C;tss_id=TSS7020;nbOverlaps=0;ID=YCR004C;Name=YCP4
III	S-MART	transcript	120946	122328	.	-	.	seqedit=false;p_id=P1075;gene_id=YCR005C;tss_id=TSS1268;nbOverlaps=0;ID=YCR005C;Name=CIT2
V	S-MART	transcript	128825	130561	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:12690:20407#0--HWUSI-EAS1656_0009_FC:3:20:7736:12021#0--HWUSI-EAS1656_00;p_id=P3782;gene_id=YEL013W;tss_id=TSS4207;nbOverlaps=1419;ID=YEL013W;Name=VAC8
V	S-MART	transcript	126629	128284	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:6010:15219#0--HWUSI-EAS1656_0009_FC:3:102:11911:13447#0--HWUSI-EAS1656_00;p_id=P1510;gene_id=YEL015W;tss_id=TSS5431;nbOverlaps=287;ID=YEL015W;Name=EDC3
V	S-MART	transcript	128303	128608	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:7216:1918#0--HWUSI-EAS1656_0009_FC:3:44:12770:1697#0--HWUSI-EAS1656_0009_;p_id=P5976;gene_id=YEL014C;tss_id=TSS3234;nbOverlaps=24;ID=YEL014C;Name=YEL014C
V	S-MART	transcript	124737	126218	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:13438:5878#0--HWUSI-EAS1656_0009_FC:3:47:4755:14753#0--HWUSI-EAS1656_0009;p_id=P5004;gene_id=YEL016C;tss_id=TSS5175;nbOverlaps=242;ID=YEL016C;Name=NPP2
V	S-MART	transcript	122798	122929	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:3005:5755#0--HWUSI-EAS1656_0009_FC:3:116:16296:5967#0--HWUSI-EAS1656_000;p_id=P2628;gene_id=YEL017C-A;tss_id=TSS4567;nbOverlaps=929;ID=YEL017C-A;Name=PMP2
V	S-MART	transcript	123657	124670	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:14550:6347#0--HWUSI-EAS1656_0009_FC:3:82:9156:16439#0--HWUSI-EAS1656_0009;p_id=P1540;gene_id=YEL017W;tss_id=TSS5673;nbOverlaps=88;ID=YEL017W;Name=GTT3
V	S-MART	transcript	121455	121988	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:16188:7740#0--HWUSI-EAS1656_0009_FC:3:13:19701:15472#0--HWUSI-EAS1656_000;p_id=P499;gene_id=YEL018C-A;tss_id=TSS5331;nbOverlaps=31;ID=YEL018C-A;Name=YEL018C-A
V	S-MART	transcript	121471	122310	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:16188:7740#0--HWUSI-EAS1656_0009_FC:3:13:19701:15472#0--HWUSI-EAS1656_000;p_id=P4742;gene_id=YEL018W;tss_id=TSS1506;nbOverlaps=39;ID=YEL018W;Name=EAF5
XII	S-MART	transcript	706198	707040	.	-	.	seqedit=false;p_id=P1793;gene_id=YLR284C;tss_id=TSS6031;nbOverlaps=0;ID=YLR284C;Name=ECI1
V	S-MART	transcript	117183	117380	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:1067:4394#0--HWUSI-EAS1656_0009_FC:3:92:15651:2622#0--HWUSI-EAS1656_0009_;p_id=P1511;gene_id=YEL020C-B;tss_id=TSS5590;nbOverlaps=65;ID=YEL020C-B;Name=YEL020C-B
V	S-MART	transcript	118617	120299	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:66:6848:13526#0--HWUSI-EAS1656_0009_FC:3:85:15323:12407#0--HWUSI-EAS1656_000;p_id=P4813;gene_id=YEL020C;tss_id=TSS6095;nbOverlaps=114;ID=YEL020C;Name=YEL020C
V	S-MART	transcript	117211	117474	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:18921:2752#0--HWUSI-EAS1656_0009_FC:3:22:14996:3840#0--HWUSI-EAS1656_0009;p_id=P4734;gene_id=YEL020W-A;tss_id=TSS4243;nbOverlaps=144;ID=YEL020W-A;Name=TIM9
V	S-MART	transcript	116167	116970	.	+	.	seqedit=false;p_id=P2158;gene_id=YEL021W;tss_id=TSS3723;nbOverlaps=0;ID=YEL021W;Name=URA3
V	S-MART	transcript	111421	115800	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:8095:18862#0--HWUSI-EAS1656_0009_FC:3:44:19818:11057#0--HWUSI-EAS1656_000;p_id=P800;gene_id=YEL022W;tss_id=TSS6207;nbOverlaps=795;ID=YEL022W;Name=GEA2
V	S-MART	transcript	107260	107907	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:18588:13810#0--HWUSI-EAS1656_0009_FC:3:7:9531:3825#0--HWUSI-EAS1656_0009;p_id=P2124;gene_id=YEL024W;tss_id=TSS3082;nbOverlaps=115;ID=YEL024W;Name=RIP1
V	S-MART	transcript	108504	110552	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:98:15179:6909#0--HWUSI-EAS1656_0009_FC:3:94:6354:16975#0--HWUSI-EAS1656_0009;p_id=P1852;gene_id=YEL023C;tss_id=TSS313;nbOverlaps=20;ID=YEL023C;Name=YEL023C
V	S-MART	transcript	101943	102323	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:12997:10506#0--HWUSI-EAS1656_0009_FC:3:114:9920:8578#0--HWUSI-EAS1656_000;p_id=P2059;gene_id=YEL026W;tss_id=TSS5668;nbOverlaps=324;ID=YEL026W;Name=SNU13
V	S-MART	transcript	102581	106147	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:23:7563:20887#0--HWUSI-EAS1656_0009_FC:3:39:17609:20713#0--HWUSI-EAS1656_000;p_id=P6114;gene_id=YEL025C;tss_id=TSS178;nbOverlaps=271;ID=YEL025C;Name=YEL025C
V	S-MART	transcript	100769	101251	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:13856:15951#0--HWUSI-EAS1656_0009_FC:3:59:18257:19316#0--HWUSI-EAS1656_00;p_id=P5086;gene_id=YEL027W;tss_id=TSS2154;nbOverlaps=4743;ID=YEL027W;Name=VMA3
V	S-MART	transcript	96858	97796	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:4609:11631#0--HWUSI-EAS1656_0009_FC:3:85:2916:13027#0--HWUSI-EAS1656_0009;p_id=P4665;gene_id=YEL029C;tss_id=TSS1484;nbOverlaps=221;ID=YEL029C;Name=BUD16
V	S-MART	transcript	98668	99129	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:3947:1363#0--HWUSI-EAS1656_0009_FC:3:78:15287:15249#0--HWUSI-EAS1656_0009;p_id=P6358;gene_id=YEL028W;tss_id=TSS3371;nbOverlaps=9;ID=YEL028W;Name=YEL028W
V	S-MART	transcript	94583	94897	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:11021:10777#0--HWUSI-EAS1656_0009_FC:3:79:14413:9007#0--HWUSI-EAS1656_00;p_id=P627;gene_id=YEL030C-A;tss_id=TSS5813;nbOverlaps=16;ID=YEL030C-A;Name=YEL030C-A
V	S-MART	transcript	94644	96578	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:11021:10777#0--HWUSI-EAS1656_0009_FC:3:79:14413:9007#0--HWUSI-EAS1656_00;p_id=P493;gene_id=YEL030W;tss_id=TSS4149;nbOverlaps=39;ID=YEL030W;Name=ECM10
V	S-MART	transcript	90258	93905	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:8215:13745#0--HWUSI-EAS1656_0009_FC:3:20:5595:9385#0--HWUSI-EAS1656_0009_;p_id=P5096;gene_id=YEL031W;tss_id=TSS4961;nbOverlaps=3268;ID=YEL031W;Name=SPF1
V	S-MART	transcript	87040	87201	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:10937:17159#0--HWUSI-EAS1656_0009_FC:3:45:8336:4502#0--HWUSI-EAS1656_000;p_id=P2958;gene_id=YEL032C-A;tss_id=TSS4277;nbOverlaps=35;ID=YEL032C-A;Name=YEL032C-A
III	S-MART	transcript	163446	163856	.	-	.	seqedit=false;p_id=P1419;gene_id=YCR025C;tss_id=TSS1310;nbOverlaps=0;ID=YCR025C;Name=YCR025C
III	S-MART	transcript	167370	167999	.	-	.	seqedit=false;p_id=P4005;gene_id=YCR027C;tss_id=TSS1299;nbOverlaps=0;ID=YCR027C;Name=RHB1
III	S-MART	transcript	170886	172424	.	-	.	seqedit=false;p_id=P1207;gene_id=YCR028C;tss_id=TSS101;nbOverlaps=0;ID=YCR028C;Name=FEN2
III	S-MART	transcript	172950	173440	.	-	.	seqedit=false;p_id=P6155;gene_id=YCR028C-A;tss_id=TSS4137;nbOverlaps=0;ID=YCR028C-A;Name=RIM1
III	S-MART	exon	172950	173115	.	-	.	ID=YCR028C-A-exon1;Name=RIM1-exon1;Parent=YCR028C-A
III	S-MART	exon	173199	173440	.	-	.	ID=YCR028C-A-exon2;Name=RIM1-exon2;Parent=YCR028C-A
V	S-MART	transcript	85045	85545	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:2228:16648#0--HWUSI-EAS1656_0009_FC:3:68:15864:17050#0--HWUSI-EAS1656_000;p_id=P4199;gene_id=YEL035C;tss_id=TSS6711;nbOverlaps=4;ID=YEL035C;Name=UTR5
V	S-MART	transcript	83050	84552	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:3800:17767#0--HWUSI-EAS1656_0009_FC:3:100:12684:18813#0--HWUSI-EAS1656_00;p_id=P865;gene_id=YEL036C;tss_id=TSS4797;nbOverlaps=431;ID=YEL036C;Name=ANP1
III	S-MART	transcript	173826	176438	.	-	.	seqedit=false;p_id=P2763;gene_id=YCR030C;tss_id=TSS3829;nbOverlaps=0;ID=YCR030C;Name=SYP1
III	S-MART	transcript	177500	178220	.	-	.	seqedit=false;p_id=P5480;gene_id=YCR031C;tss_id=TSS826;nbOverlaps=0;ID=YCR031C;Name=RPS14A
III	S-MART	exon	177500	177906	.	-	.	ID=YCR031C-exon1;Name=RPS14A-exon1;Parent=YCR031C
III	S-MART	exon	178214	178220	.	-	.	ID=YCR031C-exon2;Name=RPS14A-exon2;Parent=YCR031C
V	S-MART	transcript	79636	79977	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:8061:17110#0--HWUSI-EAS1656_0009_FC:3:38:8099:3160#0--HWUSI-EAS1656_0009_;p_id=P5526;gene_id=YEL039C;tss_id=TSS5466;nbOverlaps=6;ID=YEL039C;Name=CYC7
V	S-MART	transcript	78053	79456	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:117:17890:8391#0--HWUSI-EAS1656_0009_FC:3:116:13183:3616#0--HWUSI-EAS1656_00;p_id=P5312;gene_id=YEL040W;tss_id=TSS1364;nbOverlaps=5144;ID=YEL040W;Name=UTR2
V	S-MART	transcript	75944	77431	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:10386:17231#0--HWUSI-EAS1656_0009_FC:3:67:5699:8809#0--HWUSI-EAS1656_0009;p_id=P5603;gene_id=YEL041W;tss_id=TSS4865;nbOverlaps=24;ID=YEL041W;Name=YEF1
V	S-MART	transcript	73771	75327	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:36:4372:6272#0--HWUSI-EAS1656_0009_FC:3:98:16433:4578#0--HWUSI-EAS1656_0009_;p_id=P6642;gene_id=YEL042W;tss_id=TSS5410;nbOverlaps=594;ID=YEL042W;Name=GDA1
III	S-MART	transcript	190592	191635	.	+	.	seqedit=false;p_id=P4556;gene_id=YCR034W;tss_id=TSS2451;nbOverlaps=0;ID=YCR034W;Name=FEN1
XII	S-MART	transcript	699999	704024	.	-	.	seqedit=false;p_id=P5197;gene_id=YLR278C;tss_id=TSS6346;nbOverlaps=0;ID=YLR278C;Name=YLR278C
V	S-MART	transcript	67629	68792	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:15074:2129#0--HWUSI-EAS1656_0009_FC:3:88:2788:21102#0--HWUSI-EAS1656_0009;p_id=P2852;gene_id=YEL046C;tss_id=TSS1882;nbOverlaps=818;ID=YEL046C;Name=GLY1
III	S-MART	transcript	194414	197185	.	-	.	seqedit=false;p_id=P1876;gene_id=YCR037C;tss_id=TSS1464;nbOverlaps=0;ID=YCR037C;Name=PHO87
III	S-MART	transcript	197621	199549	.	-	.	seqedit=false;p_id=P1861;gene_id=YCR038C;tss_id=TSS2048;nbOverlaps=0;ID=YCR038C;Name=BUD5
III	S-MART	transcript	199293	199418	.	+	.	seqedit=false;p_id=P5451;gene_id=YCR038W-A;tss_id=TSS3444;nbOverlaps=0;ID=YCR038W-A;Name=YCR038W-A
XVI	S-MART	transcript	265028	266104	.	+	.	seqedit=false;p_id=P4534;gene_id=YPL152W;tss_id=TSS2785;nbOverlaps=0;ID=YPL152W;Name=RRD2
XVI	S-MART	transcript	650435	653662	.	-	.	seqedit=false;p_id=P5368;gene_id=YPR042C;tss_id=TSS1285;nbOverlaps=0;ID=YPR042C;Name=PUF2
VIII	S-MART	transcript	209475	209645	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:38:4175:16601#0--HWUSI-EAS1656_0009_FC:3:65:11334:2073#0--HWUSI-EAS1656_0009;p_id=P2973;gene_id=YHR050W-A;tss_id=TSS862;nbOverlaps=42;ID=YHR050W-A;Name=YHR050W-A
XVI	S-MART	transcript	264602	264700	.	+	.	seqedit=false;p_id=P3371;gene_id=YPL152W-A;tss_id=TSS2241;nbOverlaps=0;ID=YPL152W-A;Name=YPL152W-A
X	S-MART	transcript	431589	432200	.	-	.	seqedit=false;p_id=P1863;gene_id=YJL004C;tss_id=TSS5806;nbOverlaps=0;ID=YJL004C;Name=SYS1
XVI	S-MART	transcript	654166	654847	.	+	.	seqedit=false;p_id=P1986;gene_id=YPR043W;tss_id=TSS3756;nbOverlaps=0;ID=YPR043W;Name=RPL43A
XVI	S-MART	exon	654166	654167	.	+	.	ID=YPR043W-exon1;Name=RPL43A-exon1;Parent=YPR043W
XVI	S-MART	exon	654571	654847	.	+	.	ID=YPR043W-exon2;Name=RPL43A-exon2;Parent=YPR043W
XVI	S-MART	transcript	261727	264192	.	-	.	seqedit=false;p_id=P5628;gene_id=YPL153C;tss_id=TSS1836;nbOverlaps=0;ID=YPL153C;Name=RAD53
IV	S-MART	transcript	369771	370706	.	+	.	seqedit=false;p_id=P4627;gene_id=YDL047W;tss_id=TSS3181;nbOverlaps=0;ID=YDL047W;Name=SIT4
IV	S-MART	transcript	366739	368211	.	-	.	seqedit=false;p_id=P2052;gene_id=YDL048C;tss_id=TSS5387;nbOverlaps=0;ID=YDL048C;Name=STP4
IV	S-MART	transcript	365068	365874	.	-	.	seqedit=false;p_id=P1393;gene_id=YDL049C;tss_id=TSS924;nbOverlaps=0;ID=YDL049C;Name=KNH1
IV	S-MART	transcript	363952	364779	.	+	.	seqedit=false;p_id=P3906;gene_id=YDL051W;tss_id=TSS6624;nbOverlaps=0;ID=YDL051W;Name=LHP1
IV	S-MART	transcript	364446	364817	.	-	.	seqedit=false;p_id=P2186;gene_id=YDL050C;tss_id=TSS4048;nbOverlaps=0;ID=YDL050C;Name=YDL050C
IV	S-MART	transcript	362672	363583	.	-	.	seqedit=false;p_id=P699;gene_id=YDL052C;tss_id=TSS3308;nbOverlaps=0;ID=YDL052C;Name=SLC1
XV	S-MART	transcript	654210	656570	.	+	.	seqedit=false;p_id=P4082;gene_id=YOR172W;tss_id=TSS6527;nbOverlaps=0;ID=YOR172W;Name=YRM1
IV	S-MART	transcript	361699	362256	.	-	.	seqedit=false;p_id=P5232;gene_id=YDL053C;tss_id=TSS3814;nbOverlaps=0;ID=YDL053C;Name=PBP4
III	S-MART	transcript	23523	23981	.	-	.	seqedit=false;p_id=P334;gene_id=YCL058C;tss_id=TSS5288;nbOverlaps=0;ID=YCL058C;Name=FYV5
IV	S-MART	transcript	359825	361285	.	-	.	seqedit=false;p_id=P1706;gene_id=YDL054C;tss_id=TSS4904;nbOverlaps=0;ID=YDL054C;Name=MCH1
IV	S-MART	transcript	355674	356759	.	-	.	seqedit=false;p_id=P1102;gene_id=YDL055C;tss_id=TSS2443;nbOverlaps=0;ID=YDL055C;Name=PSA1
IV	S-MART	transcript	352877	355378	.	+	.	seqedit=false;p_id=P2967;gene_id=YDL056W;tss_id=TSS5091;nbOverlaps=0;ID=YDL056W;Name=MBP1
V	S-MART	transcript	69757	70257	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:17663:7560#0--HWUSI-EAS1656_0009_FC:3:60:11718:1629#0--HWUSI-EAS1656_0009;p_id=P3148;gene_id=YEL044W;tss_id=TSS264;nbOverlaps=117;ID=YEL044W;Name=IES6
IV	S-MART	transcript	345665	351037	.	+	.	seqedit=false;p_id=P3071;gene_id=YDL058W;tss_id=TSS5948;nbOverlaps=0;ID=YDL058W;Name=USO1
IV	S-MART	transcript	351434	352420	.	+	.	seqedit=false;p_id=P4568;gene_id=YDL057W;tss_id=TSS4695;nbOverlaps=0;ID=YDL057W;Name=YDL057W
IV	S-MART	transcript	344237	344953	.	-	.	seqedit=false;p_id=P567;gene_id=YDL059C;tss_id=TSS1345;nbOverlaps=0;ID=YDL059C;Name=RAD59
II	S-MART	transcript	5790	6125	.	+	.	seqedit=false;p_id=P3575;gene_id=YBL109W;tss_id=TSS6748;nbOverlaps=0;ID=YBL109W;Name=YBL109W
IV	S-MART	transcript	341619	343985	.	+	.	seqedit=false;p_id=P1336;gene_id=YDL060W;tss_id=TSS5654;nbOverlaps=0;ID=YDL060W;Name=TSR1
IV	S-MART	transcript	340628	340798	.	-	.	seqedit=false;p_id=P3026;gene_id=YDL061C;tss_id=TSS4716;nbOverlaps=0;ID=YDL061C;Name=RPS29B
IV	S-MART	transcript	337487	338070	.	+	.	seqedit=false;p_id=P3797;gene_id=YDL064W;tss_id=TSS3735;nbOverlaps=0;ID=YDL064W;Name=UBC9
IV	S-MART	exon	337487	337524	.	+	.	ID=YDL064W-exon1;Name=UBC9-exon1;Parent=YDL064W
IV	S-MART	exon	337635	338070	.	+	.	ID=YDL064W-exon2;Name=UBC9-exon2;Parent=YDL064W
IV	S-MART	transcript	339857	340282	.	+	.	seqedit=false;p_id=P3207;gene_id=YDL062W;tss_id=TSS1956;nbOverlaps=0;ID=YDL062W;Name=YDL062W
IV	S-MART	transcript	338272	340134	.	-	.	seqedit=false;p_id=P5880;gene_id=YDL063C;tss_id=TSS5227;nbOverlaps=0;ID=YDL063C;Name=YDL063C
XVI	S-MART	transcript	185317	187725	.	-	.	seqedit=false;p_id=P2464;gene_id=YPL190C;tss_id=TSS6455;nbOverlaps=0;ID=YPL190C;Name=NAB3
III	S-MART	transcript	22429	23379	.	-	.	seqedit=false;p_id=P5672;gene_id=YCL059C;tss_id=TSS4383;nbOverlaps=0;ID=YCL059C;Name=KRR1
XVI	S-MART	transcript	182655	183056	.	-	.	seqedit=false;p_id=P3941;gene_id=YPL192C;tss_id=TSS1161;nbOverlaps=0;ID=YPL192C;Name=PRM3
IV	S-MART	transcript	336249	337277	.	-	.	seqedit=false;p_id=P4516;gene_id=YDL065C;tss_id=TSS1852;nbOverlaps=0;ID=YDL065C;Name=PEX19
IV	S-MART	transcript	334835	336121	.	+	.	seqedit=false;p_id=P6462;gene_id=YDL066W;tss_id=TSS2742;nbOverlaps=0;ID=YDL066W;Name=IDP1
IV	S-MART	transcript	334217	334396	.	-	.	seqedit=false;p_id=P2328;gene_id=YDL067C;tss_id=TSS7007;nbOverlaps=0;ID=YDL067C;Name=COX9
IV	S-MART	transcript	333121	333810	.	-	.	seqedit=false;p_id=P1057;gene_id=YDL069C;tss_id=TSS7039;nbOverlaps=0;ID=YDL069C;Name=CBS1
IV	S-MART	transcript	333500	333829	.	+	.	seqedit=false;p_id=P3525;gene_id=YDL068W;tss_id=TSS3185;nbOverlaps=0;ID=YDL068W;Name=YDL068W
III	S-MART	transcript	18816	22106	.	-	.	seqedit=false;p_id=P6371;gene_id=YCL061C;tss_id=TSS6827;nbOverlaps=0;ID=YCL061C;Name=MRC1
IV	S-MART	transcript	331024	332940	.	+	.	seqedit=false;p_id=P3117;gene_id=YDL070W;tss_id=TSS2901;nbOverlaps=0;ID=YDL070W;Name=BDF2
IV	S-MART	transcript	329836	330447	.	-	.	seqedit=false;p_id=P1265;gene_id=YDL072C;tss_id=TSS6338;nbOverlaps=0;ID=YDL072C;Name=YET3
IV	S-MART	transcript	330666	331040	.	-	.	seqedit=false;p_id=P4708;gene_id=YDL071C;tss_id=TSS1532;nbOverlaps=0;ID=YDL071C;Name=YDL071C
IV	S-MART	transcript	324047	326149	.	-	.	seqedit=false;p_id=P4126;gene_id=YDL074C;tss_id=TSS70;nbOverlaps=0;ID=YDL074C;Name=BRE1
IV	S-MART	transcript	326613	329567	.	+	.	seqedit=false;p_id=P1633;gene_id=YDL073W;tss_id=TSS2848;nbOverlaps=0;ID=YDL073W;Name=YDL073W
IV	S-MART	transcript	322226	322988	.	+	.	seqedit=false;p_id=P2420;gene_id=YDL075W;tss_id=TSS5580;nbOverlaps=0;ID=YDL075W;Name=RPL31A
IV	S-MART	exon	322226	322282	.	+	.	ID=YDL075W-exon1;Name=RPL31A-exon1;Parent=YDL075W
IV	S-MART	exon	322704	322988	.	+	.	ID=YDL075W-exon2;Name=RPL31A-exon2;Parent=YDL075W
III	S-MART	transcript	17290	18561	.	+	.	seqedit=false;p_id=P6151;gene_id=YCL063W;tss_id=TSS3492;nbOverlaps=0;ID=YCL063W;Name=VAC17
XVI	S-MART	transcript	172033	172755	.	-	.	seqedit=false;p_id=P3397;gene_id=YPL199C;tss_id=TSS2931;nbOverlaps=0;ID=YPL199C;Name=YPL199C
XVI	S-MART	transcript	169770	171155	.	-	.	seqedit=false;p_id=P3726;gene_id=YPL201C;tss_id=TSS1629;nbOverlaps=0;ID=YPL201C;Name=YIG1
IV	S-MART	transcript	320668	321552	.	-	.	seqedit=false;p_id=P1261;gene_id=YDL076C;tss_id=TSS5164;nbOverlaps=0;ID=YDL076C;Name=RXT3
IV	S-MART	transcript	316971	320120	.	-	.	seqedit=false;p_id=P28;gene_id=YDL077C;tss_id=TSS6099;nbOverlaps=0;ID=YDL077C;Name=VAM6
IV	S-MART	transcript	315357	316388	.	-	.	seqedit=false;p_id=P4676;gene_id=YDL078C;tss_id=TSS1951;nbOverlaps=0;ID=YDL078C;Name=MDH3
XV	S-MART	transcript	657264	658325	.	+	.	seqedit=false;p_id=P2109;gene_id=YOR173W;tss_id=TSS4404;nbOverlaps=0;ID=YOR173W;Name=DCS2
IV	S-MART	transcript	312951	314748	.	-	.	seqedit=false;p_id=P4761;gene_id=YDL079C;tss_id=TSS4831;nbOverlaps=0;ID=YDL079C;Name=MRK1
IV	S-MART	exon	312951	314044	.	-	.	ID=YDL079C-exon1;Name=MRK1-exon1;Parent=YDL079C
IV	S-MART	exon	314337	314748	.	-	.	ID=YDL079C-exon2;Name=MRK1-exon2;Parent=YDL079C
II	S-MART	transcript	2582	2899	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:2460:15441#0--HWUSI-EAS1656_0009_FC:3:112:9913:18751#0--HWUSI-EAS1656_000;p_id=P3200;gene_id=YBL112C;tss_id=TSS5817;nbOverlaps=25;ID=YBL112C;Name=YBL112C
XVI	S-MART	transcript	163922	164266	.	-	.	seqedit=false;p_id=P4996;gene_id=YPL205C;tss_id=TSS6907;nbOverlaps=0;ID=YPL205C;Name=YPL205C
XVI	S-MART	transcript	159909	162341	.	+	.	seqedit=false;p_id=P1044;gene_id=YPL207W;tss_id=TSS981;nbOverlaps=0;ID=YPL207W;Name=TYW1
IV	S-MART	transcript	310642	312471	.	-	.	seqedit=false;p_id=P6500;gene_id=YDL080C;tss_id=TSS1921;nbOverlaps=0;ID=YDL080C;Name=THI3
V	S-MART	transcript	70478	73348	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:17594:17880#0--HWUSI-EAS1656_0009_FC:3:53:10240:9406#0--HWUSI-EAS1656_000;p_id=P6479;gene_id=YEL043W;tss_id=TSS1470;nbOverlaps=91;ID=YEL043W;Name=YEL043W
IV	S-MART	transcript	309802	310122	.	-	.	seqedit=false;p_id=P6044;gene_id=YDL081C;tss_id=TSS1196;nbOverlaps=0;ID=YDL081C;Name=RPP1A
IV	S-MART	transcript	308424	309388	.	+	.	seqedit=false;p_id=P4653;gene_id=YDL082W;tss_id=TSS3497;nbOverlaps=0;ID=YDL082W;Name=RPL13A
IV	S-MART	exon	308424	308427	.	+	.	ID=YDL082W-exon1;Name=RPL13A-exon1;Parent=YDL082W
IV	S-MART	exon	308793	309388	.	+	.	ID=YDL082W-exon2;Name=RPL13A-exon2;Parent=YDL082W
XVI	S-MART	transcript	153495	154040	.	+	.	seqedit=false;p_id=P3678;gene_id=YPL211W;tss_id=TSS2636;nbOverlaps=0;ID=YPL211W;Name=NIP7
II	S-MART	transcript	280	2658	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:5808:5521#0--HWUSI-EAS1656_0009_FC:3:85:16259:3682#0--HWUSI-EAS1656_0009_;p_id=P1547;gene_id=YBL113C;tss_id=TSS2562;nbOverlaps=148;ID=YBL113C;Name=YBL113C
XVI	S-MART	transcript	151515	153149	.	-	.	seqedit=false;p_id=P2469;gene_id=YPL212C;tss_id=TSS1090;nbOverlaps=0;ID=YPL212C;Name=PUS1
IV	S-MART	transcript	306926	307789	.	-	.	seqedit=false;p_id=P4852;gene_id=YDL083C;tss_id=TSS1734;nbOverlaps=0;ID=YDL083C;Name=RPS16B
IV	S-MART	exon	306926	307333	.	-	.	ID=YDL083C-exon1;Name=RPS16B-exon1;Parent=YDL083C
IV	S-MART	exon	307766	307789	.	-	.	ID=YDL083C-exon2;Name=RPS16B-exon2;Parent=YDL083C
XVI	S-MART	transcript	148569	150191	.	-	.	seqedit=false;p_id=P593;gene_id=YPL214C;tss_id=TSS618;nbOverlaps=0;ID=YPL214C;Name=THI6
XVI	S-MART	transcript	147416	148423	.	+	.	seqedit=false;p_id=P1543;gene_id=YPL215W;tss_id=TSS5417;nbOverlaps=0;ID=YPL215W;Name=CBP3
IV	S-MART	transcript	305237	306577	.	+	.	seqedit=false;p_id=P2134;gene_id=YDL084W;tss_id=TSS1808;nbOverlaps=0;ID=YDL084W;Name=SUB2
IV	S-MART	transcript	302464	302670	.	-	.	seqedit=false;p_id=P157;gene_id=YDL085C-A;tss_id=TSS5224;nbOverlaps=0;ID=YDL085C-A;Name=YDL085C-A
III	S-MART	transcript	13751	14119	.	+	.	seqedit=false;p_id=P1123;gene_id=YCL065W;tss_id=TSS4272;nbOverlaps=0;ID=YCL065W;Name=YCL065W
X	S-MART	transcript	395931	396592	.	-	.	seqedit=false;p_id=P5066;gene_id=YJL024C;tss_id=TSS4815;nbOverlaps=0;ID=YJL024C;Name=APS3
X	S-MART	exon	395931	396493	.	-	.	ID=YJL024C-exon1;Name=APS3-exon1;Parent=YJL024C
X	S-MART	exon	396571	396592	.	-	.	ID=YJL024C-exon2;Name=APS3-exon2;Parent=YJL024C
IV	S-MART	transcript	303211	304848	.	+	.	seqedit=false;p_id=P6020;gene_id=YDL085W;tss_id=TSS2142;nbOverlaps=0;ID=YDL085W;Name=NDE2
IV	S-MART	transcript	301655	302089	.	-	.	seqedit=false;p_id=P666;gene_id=YDL086C-A;tss_id=TSS2029;nbOverlaps=0;ID=YDL086C-A;Name=YDL086C-A
VII	S-MART	transcript	393986	394504	.	+	.	seqedit=false;p_id=P3092;gene_id=YGL058W;tss_id=TSS2912;nbOverlaps=0;ID=YGL058W;Name=RAD6
IV	S-MART	transcript	300214	300999	.	-	.	seqedit=false;p_id=P5125;gene_id=YDL087C;tss_id=TSS6738;nbOverlaps=0;ID=YDL087C;Name=LUC7
IV	S-MART	transcript	301413	302234	.	+	.	seqedit=false;p_id=P885;gene_id=YDL086W;tss_id=TSS3435;nbOverlaps=0;ID=YDL086W;Name=YDL086W
IV	S-MART	transcript	298417	300003	.	-	.	seqedit=false;p_id=P4047;gene_id=YDL088C;tss_id=TSS5935;nbOverlaps=0;ID=YDL088C;Name=ASM4
IV	S-MART	transcript	296820	298274	.	+	.	seqedit=false;p_id=P929;gene_id=YDL089W;tss_id=TSS5808;nbOverlaps=0;ID=YDL089W;Name=NUR1
III	S-MART	transcript	12386	13018	.	-	.	seqedit=false;p_id=P4192;gene_id=YCL067C;tss_id=TSS162;nbOverlaps=0;ID=YCL067C;Name=HMLALPHA2
IV	S-MART	transcript	295034	296329	.	-	.	seqedit=false;p_id=P5820;gene_id=YDL090C;tss_id=TSS445;nbOverlaps=0;ID=YDL090C;Name=RAM1
IV	S-MART	transcript	293392	294759	.	-	.	seqedit=false;p_id=P2696;gene_id=YDL091C;tss_id=TSS3635;nbOverlaps=0;ID=YDL091C;Name=UBX3
IV	S-MART	transcript	292781	293221	.	+	.	seqedit=false;p_id=P162;gene_id=YDL092W;tss_id=TSS4432;nbOverlaps=0;ID=YDL092W;Name=SRP14
X	S-MART	transcript	419957	421663	.	-	.	seqedit=false;p_id=P2955;gene_id=YJL008C;tss_id=TSS412;nbOverlaps=0;ID=YJL008C;Name=CCT8
IV	S-MART	transcript	289909	292140	.	+	.	seqedit=false;p_id=P5440;gene_id=YDL093W;tss_id=TSS1611;nbOverlaps=0;ID=YDL093W;Name=PMT5
IV	S-MART	transcript	287059	289512	.	+	.	seqedit=false;p_id=P5163;gene_id=YDL095W;tss_id=TSS3642;nbOverlaps=0;ID=YDL095W;Name=PMT1
IV	S-MART	transcript	289572	290081	.	-	.	seqedit=false;p_id=P4141;gene_id=YDL094C;tss_id=TSS6416;nbOverlaps=0;ID=YDL094C;Name=YDL094C
III	S-MART	transcript	9706	11082	.	+	.	seqedit=false;p_id=P2241;gene_id=YCL069W;tss_id=TSS6736;nbOverlaps=0;ID=YCL069W;Name=VBA3
IV	S-MART	transcript	286998	287324	.	-	.	seqedit=false;p_id=P2742;gene_id=YDL096C;tss_id=TSS1596;nbOverlaps=0;ID=YDL096C;Name=OPI6
IV	S-MART	transcript	285391	286695	.	-	.	seqedit=false;p_id=P2143;gene_id=YDL097C;tss_id=TSS1843;nbOverlaps=0;ID=YDL097C;Name=RPN6
XV	S-MART	transcript	658747	659601	.	+	.	seqedit=false;p_id=P6385;gene_id=YOR174W;tss_id=TSS1958;nbOverlaps=0;ID=YOR174W;Name=MED4
II	S-MART	transcript	244366	245667	.	-	.	seqedit=false;p_id=P3346;gene_id=YBR004C;tss_id=TSS6917;nbOverlaps=0;ID=YBR004C;Name=GPI18
XVI	S-MART	transcript	654524	654877	.	-	.	seqedit=false;p_id=P80;gene_id=YPR044C;tss_id=TSS6482;nbOverlaps=0;ID=YPR044C;Name=OPI11
VII	S-MART	transcript	405776	406597	.	+	.	seqedit=false;p_id=P1283;gene_id=YGL050W;tss_id=TSS997;nbOverlaps=0;ID=YGL050W;Name=TYW3
II	S-MART	transcript	247010	248503	.	+	.	seqedit=false;p_id=P3486;gene_id=YBR006W;tss_id=TSS4770;nbOverlaps=0;ID=YBR006W;Name=UGA2
III	S-MART	transcript	2824	3750	.	+	.	seqedit=false;gene_id=YCL074W;tss_id=TSS5486;nbOverlaps=0;ID=YCL074W;Name=YCL074W
X	S-MART	transcript	422698	423012	.	-	.	seqedit=false;p_id=P767;gene_id=YJL007C;tss_id=TSS1659;nbOverlaps=0;ID=YJL007C;Name=YJL007C
V	S-MART	transcript	136371	136778	.	-	.	seqedit=false;p_id=P6409;gene_id=YEL009C-A;tss_id=TSS3571;nbOverlaps=0;ID=YEL009C-A;Name=YEL009C-A
XV	S-MART	transcript	659815	661674	.	-	.	seqedit=false;p_id=P4053;gene_id=YOR175C;tss_id=TSS1246;nbOverlaps=0;ID=YOR175C;Name=ALE1
VI	S-MART	transcript	3322	3846	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:25:17817:12043#0--HWUSI-EAS1656_00;p_id=P38;gene_id=YFL064C;tss_id=TSS4375;nbOverlaps=59;ID=YFL064C;Name=YFL064C
VII	S-MART	transcript	403437	403742	.	+	.	seqedit=false;p_id=P4610;gene_id=YGL052W;tss_id=TSS4485;nbOverlaps=0;ID=YGL052W;Name=YGL052W
XVI	S-MART	transcript	655140	656552	.	-	.	seqedit=false;p_id=P761;gene_id=YPR045C;tss_id=TSS3417;nbOverlaps=0;ID=YPR045C;Name=THP3
VII	S-MART	transcript	400871	401287	.	-	.	seqedit=false;p_id=P3891;gene_id=YGL054C;tss_id=TSS3602;nbOverlaps=0;ID=YGL054C;Name=ERV14
III	S-MART	transcript	118620	119171	.	+	.	seqedit=false;p_id=P5150;gene_id=YCR003W;tss_id=TSS2549;nbOverlaps=0;ID=YCR003W;Name=MRPL32
VII	S-MART	transcript	396035	397618	.	-	.	seqedit=false;p_id=P3410;gene_id=YGL056C;tss_id=TSS1795;nbOverlaps=0;ID=YGL056C;Name=SDS23
X	S-MART	transcript	417562	419562	.	-	.	seqedit=false;p_id=P1925;gene_id=YJL010C;tss_id=TSS4399;nbOverlaps=0;ID=YJL010C;Name=NOP9
VII	S-MART	transcript	394966	395829	.	-	.	seqedit=false;p_id=P2726;gene_id=YGL057C;tss_id=TSS4748;nbOverlaps=0;ID=YGL057C;Name=GEP7
XV	S-MART	transcript	662401	663582	.	+	.	seqedit=false;p_id=P619;gene_id=YOR176W;tss_id=TSS1300;nbOverlaps=0;ID=YOR176W;Name=HEM15
III	S-MART	transcript	128470	130281	.	+	.	seqedit=false;p_id=P1551;gene_id=YCR008W;tss_id=TSS880;nbOverlaps=0;ID=YCR008W;Name=SAT4
XI	S-MART	transcript	309206	309442	.	+	.	seqedit=false;p_id=P6632;gene_id=YKL068W-A;tss_id=TSS451;nbOverlaps=0;ID=YKL068W-A;Name=YKL068W-A
XI	S-MART	transcript	299582	301882	.	+	.	seqedit=false;p_id=P4002;gene_id=YKL072W;tss_id=TSS1572;nbOverlaps=0;ID=YKL072W;Name=STB6
VII	S-MART	transcript	216273	217298	.	+	.	seqedit=false;p_id=P4656;gene_id=YGL153W;tss_id=TSS6712;nbOverlaps=0;ID=YGL153W;Name=PEX14
XI	S-MART	transcript	307285	307827	.	+	.	seqedit=false;p_id=P4631;gene_id=YKL069W;tss_id=TSS1391;nbOverlaps=0;ID=YKL069W;Name=YKL069W
XI	S-MART	transcript	306211	306720	.	+	.	seqedit=false;p_id=P6237;gene_id=YKL070W;tss_id=TSS5040;nbOverlaps=0;ID=YKL070W;Name=YKL070W
XI	S-MART	transcript	305114	305884	.	+	.	seqedit=false;p_id=P4711;gene_id=YKL071W;tss_id=TSS2229;nbOverlaps=0;ID=YKL071W;Name=YKL071W
III	S-MART	transcript	122530	123003	.	-	.	seqedit=false;p_id=P6094;gene_id=YCR006C;tss_id=TSS3203;nbOverlaps=0;ID=YCR006C;Name=YCR006C
XI	S-MART	transcript	296430	299075	.	+	.	seqedit=false;p_id=P1372;gene_id=YKL073W;tss_id=TSS3880;nbOverlaps=0;ID=YKL073W;Name=LHS1
XI	S-MART	transcript	294610	296193	.	-	.	seqedit=false;p_id=P764;gene_id=YKL074C;tss_id=TSS6488;nbOverlaps=0;ID=YKL074C;Name=MUD2
XI	S-MART	transcript	292838	293221	.	-	.	seqedit=false;p_id=P6033;gene_id=YKL076C;tss_id=TSS1892;nbOverlaps=0;ID=YKL076C;Name=PSY1
XI	S-MART	transcript	292956	294308	.	-	.	seqedit=false;p_id=P2075;gene_id=YKL075C;tss_id=TSS3179;nbOverlaps=0;ID=YKL075C;Name=YKL075C
XI	S-MART	transcript	288845	291052	.	+	.	seqedit=false;p_id=P1298;gene_id=YKL078W;tss_id=TSS3079;nbOverlaps=0;ID=YKL078W;Name=DHR2
XI	S-MART	transcript	291453	292631	.	+	.	seqedit=false;p_id=P3068;gene_id=YKL077W;tss_id=TSS3064;nbOverlaps=0;ID=YKL077W;Name=YKL077W
III	S-MART	transcript	126011	126730	.	-	.	seqedit=false;p_id=P3974;gene_id=YCR007C;tss_id=TSS4253;nbOverlaps=0;ID=YCR007C;Name=YCR007C
XI	S-MART	transcript	286603	288573	.	+	.	seqedit=false;p_id=P2103;gene_id=YKL079W;tss_id=TSS262;nbOverlaps=0;ID=YKL079W;Name=SMY1
XI	S-MART	transcript	285030	286208	.	+	.	seqedit=false;p_id=P6655;gene_id=YKL080W;tss_id=TSS5942;nbOverlaps=0;ID=YKL080W;Name=VMA5
XIV	S-MART	transcript	473391	476012	.	+	.	seqedit=false;p_id=P5287;gene_id=YNL082W;tss_id=TSS2920;nbOverlaps=0;ID=YNL082W;Name=PMS1
XI	S-MART	transcript	282891	284455	.	+	.	seqedit=false;p_id=P6594;gene_id=YKL081W;tss_id=TSS5600;nbOverlaps=0;ID=YKL081W;Name=TEF4
XI	S-MART	exon	282891	283095	.	+	.	ID=YKL081W-exon1;Name=TEF4-exon1;Parent=YKL081W
XI	S-MART	exon	283422	284455	.	+	.	ID=YKL081W-exon2;Name=TEF4-exon2;Parent=YKL081W
XI	S-MART	transcript	281025	282329	.	-	.	seqedit=false;p_id=P2715;gene_id=YKL082C;tss_id=TSS2303;nbOverlaps=0;ID=YKL082C;Name=RRP14
III	S-MART	transcript	130745	131542	.	-	.	seqedit=false;p_id=P3834;gene_id=YCR009C;tss_id=TSS1697;nbOverlaps=0;ID=YCR009C;Name=RVS161
XI	S-MART	transcript	280509	280859	.	+	.	seqedit=false;p_id=P518;gene_id=YKL084W;tss_id=TSS2631;nbOverlaps=0;ID=YKL084W;Name=HOT13
XI	S-MART	transcript	280921	281535	.	+	.	seqedit=false;p_id=P597;gene_id=YKL083W;tss_id=TSS6899;nbOverlaps=0;ID=YKL083W;Name=YKL083W
XI	S-MART	transcript	279123	280127	.	+	.	seqedit=false;p_id=P1090;gene_id=YKL085W;tss_id=TSS7028;nbOverlaps=0;ID=YKL085W;Name=MDH1
X	S-MART	transcript	419855	420181	.	+	.	seqedit=false;p_id=P5216;gene_id=YJL009W;tss_id=TSS4903;nbOverlaps=0;ID=YJL009W;Name=YJL009W
XI	S-MART	transcript	278281	278664	.	+	.	seqedit=false;p_id=P1431;gene_id=YKL086W;tss_id=TSS4081;nbOverlaps=0;ID=YKL086W;Name=SRX1
XI	S-MART	transcript	277189	277863	.	-	.	seqedit=false;p_id=P2569;gene_id=YKL087C;tss_id=TSS6970;nbOverlaps=0;ID=YKL087C;Name=CYT2
XI	S-MART	transcript	275283	276998	.	+	.	seqedit=false;p_id=P6262;gene_id=YKL088W;tss_id=TSS4785;nbOverlaps=0;ID=YKL088W;Name=CAB3
III	S-MART	transcript	132273	133124	.	-	.	seqedit=false;p_id=P3169;gene_id=YCR010C;tss_id=TSS1984;nbOverlaps=0;ID=YCR010C;Name=ADY2
XI	S-MART	transcript	273394	275043	.	+	.	seqedit=false;p_id=P2558;gene_id=YKL089W;tss_id=TSS6307;nbOverlaps=0;ID=YKL089W;Name=MIF2
XI	S-MART	transcript	271878	273209	.	+	.	seqedit=false;p_id=P4766;gene_id=YKL090W;tss_id=TSS6809;nbOverlaps=0;ID=YKL090W;Name=CUE2
XI	S-MART	transcript	266145	269459	.	-	.	seqedit=false;p_id=P6051;gene_id=YKL092C;tss_id=TSS1812;nbOverlaps=0;ID=YKL092C;Name=BUD2
XI	S-MART	transcript	269718	270650	.	-	.	seqedit=false;p_id=P2240;gene_id=YKL091C;tss_id=TSS4718;nbOverlaps=0;ID=YKL091C;Name=YKL091C
XI	S-MART	transcript	264789	265808	.	+	.	seqedit=false;p_id=P2038;gene_id=YKL093W;tss_id=TSS4489;nbOverlaps=0;ID=YKL093W;Name=MBR1
XV	S-MART	transcript	665785	667179	.	-	.	seqedit=false;p_id=P3829;gene_id=YOR177C;tss_id=TSS4468;nbOverlaps=0;ID=YOR177C;Name=MPC54
XI	S-MART	transcript	263349	264290	.	+	.	seqedit=false;p_id=P4467;gene_id=YKL094W;tss_id=TSS384;nbOverlaps=0;ID=YKL094W;Name=YJU3
III	S-MART	transcript	133724	136873	.	-	.	seqedit=false;p_id=P4739;gene_id=YCR011C;tss_id=TSS3448;nbOverlaps=0;ID=YCR011C;Name=ADP1
XI	S-MART	transcript	262277	263113	.	+	.	seqedit=false;p_id=P3383;gene_id=YKL095W;tss_id=TSS5176;nbOverlaps=0;ID=YKL095W;Name=YJU2
XI	S-MART	transcript	259073	259222	.	-	.	seqedit=false;p_id=P537;gene_id=YKL096C-B;tss_id=TSS5019;nbOverlaps=0;ID=YKL096C-B;Name=YKL096C-B
XI	S-MART	transcript	261132	261851	.	+	.	seqedit=false;p_id=P193;gene_id=YKL096W;tss_id=TSS2595;nbOverlaps=0;ID=YKL096W;Name=CWP1
V	S-MART	transcript	65385	66797	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:14421:8211#0--HWUSI-EAS1656_0009_FC:3:5:18872:9773#0--HWUSI-EAS1656_0009_;p_id=P3479;gene_id=YEL047C;tss_id=TSS94;nbOverlaps=448;ID=YEL047C;Name=YEL047C
XI	S-MART	transcript	259253	259531	.	+	.	seqedit=false;p_id=P5017;gene_id=YKL096W-A;tss_id=TSS3850;nbOverlaps=0;ID=YKL096W-A;Name=CWP2
XI	S-MART	transcript	256770	257843	.	+	.	seqedit=false;p_id=P5344;gene_id=YKL098W;tss_id=TSS7022;nbOverlaps=0;ID=YKL098W;Name=MTC2
XI	S-MART	transcript	258503	258913	.	-	.	seqedit=false;p_id=P4046;gene_id=YKL097C;tss_id=TSS5598;nbOverlaps=0;ID=YKL097C;Name=YKL097C
III	S-MART	transcript	137746	138996	.	+	.	seqedit=false;p_id=P1748;gene_id=YCR012W;tss_id=TSS1858;nbOverlaps=0;ID=YCR012W;Name=PGK1
XI	S-MART	transcript	255720	256472	.	-	.	seqedit=false;p_id=P3893;gene_id=YKL099C;tss_id=TSS600;nbOverlaps=0;ID=YKL099C;Name=UTP11
XI	S-MART	transcript	254159	254248	.	+	.	seqedit=false;p_id=P5229;gene_id=YKL100W-A;tss_id=TSS4263;nbOverlaps=0;ID=YKL100W-A;Name=YKL100W-A
XI	S-MART	transcript	253697	255460	.	-	.	seqedit=false;p_id=P3795;gene_id=YKL100C;tss_id=TSS5325;nbOverlaps=0;ID=YKL100C;Name=YKL100C
XI	S-MART	transcript	248920	253476	.	+	.	seqedit=false;p_id=P5640;gene_id=YKL101W;tss_id=TSS3463;nbOverlaps=0;ID=YKL101W;Name=HSL1
XI	S-MART	transcript	246138	247682	.	-	.	seqedit=false;p_id=P4206;gene_id=YKL103C;tss_id=TSS5457;nbOverlaps=0;ID=YKL103C;Name=LAP4
XI	S-MART	transcript	248062	248367	.	-	.	seqedit=false;p_id=P2340;gene_id=YKL102C;tss_id=TSS3841;nbOverlaps=0;ID=YKL102C;Name=YKL102C
II	S-MART	transcript	270247	270633	.	+	.	seqedit=false;p_id=P436;gene_id=YBR016W;tss_id=TSS3519;nbOverlaps=0;ID=YBR016W;Name=YBR016W
XI	S-MART	transcript	243220	245373	.	-	.	seqedit=false;p_id=P111;gene_id=YKL104C;tss_id=TSS6636;nbOverlaps=0;ID=YKL104C;Name=GFA1
XI	S-MART	transcript	237147	237266	.	-	.	seqedit=false;p_id=P4650;gene_id=YKL106C-A;tss_id=TSS4996;nbOverlaps=0;ID=YKL106C-A;Name=YKL106C-A
VII	S-MART	transcript	385196	388732	.	+	.	seqedit=false;p_id=P4915;gene_id=YGL062W;tss_id=TSS4692;nbOverlaps=0;ID=YGL062W;Name=PYC1
XI	S-MART	transcript	239185	242583	.	-	.	seqedit=false;p_id=P4432;gene_id=YKL105C;tss_id=TSS5953;nbOverlaps=0;ID=YKL105C;Name=YKL105C
XI	S-MART	transcript	237536	238891	.	+	.	seqedit=false;p_id=P918;gene_id=YKL106W;tss_id=TSS1417;nbOverlaps=0;ID=YKL106W;Name=AAT1
XI	S-MART	transcript	234426	235787	.	+	.	seqedit=false;p_id=P5020;gene_id=YKL108W;tss_id=TSS4732;nbOverlaps=0;ID=YKL108W;Name=SLD2
XI	S-MART	transcript	236141	237070	.	+	.	seqedit=false;p_id=P3091;gene_id=YKL107W;tss_id=TSS5303;nbOverlaps=0;ID=YKL107W;Name=YKL107W
V	S-MART	transcript	120498	121301	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:6006:10860#0--HWUSI-EAS1656_0009_FC:3:36:15589:4463#0--HWUSI-EAS1656_000;p_id=P3904;gene_id=YEL019C;tss_id=TSS3069;nbOverlaps=17;ID=YEL019C;Name=MMS21
XI	S-MART	transcript	232227	233891	.	+	.	seqedit=false;p_id=P2758;gene_id=YKL109W;tss_id=TSS6078;nbOverlaps=0;ID=YKL109W;Name=HAP4
XI	S-MART	transcript	228939	229880	.	-	.	seqedit=false;p_id=P1130;gene_id=YKL110C;tss_id=TSS2331;nbOverlaps=0;ID=YKL110C;Name=KTI12
XI	S-MART	transcript	226570	228765	.	+	.	seqedit=false;p_id=P4390;gene_id=YKL112W;tss_id=TSS3470;nbOverlaps=0;ID=YKL112W;Name=ABF1
X	S-MART	transcript	414285	414770	.	-	.	seqedit=false;p_id=P3757;gene_id=YJL011C;tss_id=TSS269;nbOverlaps=0;ID=YJL011C;Name=RPC17
XI	S-MART	transcript	228464	228799	.	-	.	seqedit=false;p_id=P717;gene_id=YKL111C;tss_id=TSS5399;nbOverlaps=0;ID=YKL111C;Name=YKL111C
XI	S-MART	transcript	552770	554620	.	+	.	seqedit=false;p_id=P5733;gene_id=YKR058W;tss_id=TSS6839;nbOverlaps=0;ID=YKR058W;Name=GLG1
XI	S-MART	transcript	224727	225875	.	-	.	seqedit=false;p_id=P6551;gene_id=YKL113C;tss_id=TSS4328;nbOverlaps=0;ID=YKL113C;Name=RAD27
XI	S-MART	transcript	223352	224455	.	-	.	seqedit=false;p_id=P3423;gene_id=YKL114C;tss_id=TSS3261;nbOverlaps=0;ID=YKL114C;Name=APN1
III	S-MART	transcript	144773	147634	.	-	.	seqedit=false;p_id=P6445;gene_id=YCR017C;tss_id=TSS3263;nbOverlaps=0;ID=YCR017C;Name=CWH43
XI	S-MART	transcript	221344	222900	.	-	.	seqedit=false;p_id=P5789;gene_id=YKL116C;tss_id=TSS4779;nbOverlaps=0;ID=YKL116C;Name=PRR1
XI	S-MART	transcript	222893	223285	.	-	.	seqedit=false;p_id=P742;gene_id=YKL115C;tss_id=TSS964;nbOverlaps=0;ID=YKL115C;Name=YKL115C
XI	S-MART	transcript	220324	220974	.	+	.	seqedit=false;p_id=P5070;gene_id=YKL117W;tss_id=TSS5365;nbOverlaps=0;ID=YKL117W;Name=SBA1
XI	S-MART	transcript	218570	219217	.	-	.	seqedit=false;p_id=P1019;gene_id=YKL119C;tss_id=TSS4559;nbOverlaps=0;ID=YKL119C;Name=VPH2
XI	S-MART	transcript	219126	219437	.	+	.	seqedit=false;p_id=P6085;gene_id=YKL118W;tss_id=TSS6740;nbOverlaps=0;ID=YKL118W;Name=YKL118W
XV	S-MART	transcript	667860	670241	.	-	.	seqedit=false;p_id=P370;gene_id=YOR178C;tss_id=TSS5500;nbOverlaps=0;ID=YOR178C;Name=GAC1
XI	S-MART	transcript	217344	218318	.	+	.	seqedit=false;p_id=P2994;gene_id=YKL120W;tss_id=TSS3678;nbOverlaps=0;ID=YKL120W;Name=OAC1
III	S-MART	transcript	141217	142170	.	-	.	seqedit=false;p_id=P2266;gene_id=YCR015C;tss_id=TSS7065;nbOverlaps=0;ID=YCR015C;Name=YCR015C
XI	S-MART	transcript	214142	216700	.	+	.	seqedit=false;p_id=P5575;gene_id=YKL121W;tss_id=TSS545;nbOverlaps=0;ID=YKL121W;Name=DGR2
XI	S-MART	transcript	212495	212998	.	-	.	seqedit=false;p_id=P2198;gene_id=YKL122C;tss_id=TSS2181;nbOverlaps=0;ID=YKL122C;Name=SRP21
XI	S-MART	transcript	574934	575980	.	-	.	seqedit=false;p_id=P4259;gene_id=YKR071C;tss_id=TSS5961;nbOverlaps=0;ID=YKR071C;Name=DRE2
XI	S-MART	transcript	212043	212423	.	+	.	seqedit=false;p_id=P2906;gene_id=YKL123W;tss_id=TSS5672;nbOverlaps=0;ID=YKL123W;Name=YKL123W
XIII	S-MART	transcript	401541	404237	.	+	.	seqedit=false;p_id=P3173;gene_id=YMR066W;tss_id=TSS2791;nbOverlaps=0;ID=YMR066W;Name=SOV1
II	S-MART	transcript	281443	283344	.	+	.	seqedit=false;p_id=P5650;gene_id=YBR021W;tss_id=TSS1158;nbOverlaps=0;ID=YBR021W;Name=FUR4
XIII	S-MART	transcript	404323	405573	.	-	.	seqedit=false;p_id=P1740;gene_id=YMR067C;tss_id=TSS281;nbOverlaps=0;ID=YMR067C;Name=UBX4
XIII	S-MART	transcript	406304	407584	.	+	.	seqedit=false;p_id=P3031;gene_id=YMR068W;tss_id=TSS6389;nbOverlaps=0;ID=YMR068W;Name=AVO2
XIII	S-MART	transcript	407709	408566	.	+	.	seqedit=false;p_id=P1287;gene_id=YMR069W;tss_id=TSS55;nbOverlaps=0;ID=YMR069W;Name=NAT4
XIII	S-MART	transcript	409154	410626	.	+	.	seqedit=false;p_id=P2656;gene_id=YMR070W;tss_id=TSS2882;nbOverlaps=0;ID=YMR070W;Name=MOT3
XIII	S-MART	transcript	410762	411265	.	-	.	seqedit=false;p_id=P5790;gene_id=YMR071C;tss_id=TSS811;nbOverlaps=0;ID=YMR071C;Name=TVP18
XIII	S-MART	transcript	411569	412120	.	+	.	seqedit=false;p_id=P3811;gene_id=YMR072W;tss_id=TSS2262;nbOverlaps=0;ID=YMR072W;Name=ABF2
II	S-MART	transcript	283738	284271	.	+	.	seqedit=false;p_id=P1004;gene_id=YBR022W;tss_id=TSS4546;nbOverlaps=0;ID=YBR022W;Name=POA1
XIII	S-MART	transcript	412268	412873	.	-	.	seqedit=false;p_id=P4309;gene_id=YMR073C;tss_id=TSS126;nbOverlaps=0;ID=YMR073C;Name=IRC21
VII	S-MART	transcript	1046731	1048464	.	+	.	seqedit=false;p_id=P2636;gene_id=YGR278W;tss_id=TSS5726;nbOverlaps=0;ID=YGR278W;Name=CWC22
VII	S-MART	transcript	384502	384651	.	-	.	seqedit=false;p_id=P5443;gene_id=YGL063C-A;tss_id=TSS5835;nbOverlaps=0;ID=YGL063C-A;Name=YGL063C-A
VII	S-MART	transcript	1048798	1049958	.	-	.	seqedit=false;p_id=P1185;gene_id=YGR279C;tss_id=TSS6208;nbOverlaps=0;ID=YGR279C;Name=SCW4
VII	S-MART	transcript	1050910	1051725	.	-	.	seqedit=false;p_id=P5196;gene_id=YGR280C;tss_id=TSS4331;nbOverlaps=0;ID=YGR280C;Name=PXR1
VII	S-MART	transcript	1052824	1057257	.	+	.	seqedit=false;p_id=P6508;gene_id=YGR281W;tss_id=TSS2189;nbOverlaps=0;ID=YGR281W;Name=YOR1
XIII	S-MART	transcript	421484	422149	.	-	.	seqedit=false;p_id=P512;gene_id=YMR077C;tss_id=TSS5538;nbOverlaps=0;ID=YMR077C;Name=VPS20
II	S-MART	transcript	284428	287925	.	-	.	seqedit=false;p_id=P2705;gene_id=YBR023C;tss_id=TSS957;nbOverlaps=0;ID=YBR023C;Name=CHS3
XIII	S-MART	transcript	422503	424728	.	-	.	seqedit=false;p_id=P5099;gene_id=YMR078C;tss_id=TSS2696;nbOverlaps=0;ID=YMR078C;Name=CTF18
XIII	S-MART	transcript	424989	426059	.	+	.	seqedit=false;p_id=P6227;gene_id=YMR079W;tss_id=TSS971;nbOverlaps=0;ID=YMR079W;Name=SEC14
XIII	S-MART	exon	424989	424997	.	+	.	ID=YMR079W-exon1;Name=SEC14-exon1;Parent=YMR079W
XIII	S-MART	exon	425154	426059	.	+	.	ID=YMR079W-exon2;Name=SEC14-exon2;Parent=YMR079W
VII	S-MART	transcript	1061852	1063153	.	-	.	seqedit=false;p_id=P384;gene_id=YGR285C;tss_id=TSS3020;nbOverlaps=0;ID=YGR285C;Name=ZUO1
X	S-MART	transcript	411234	413399	.	-	.	seqedit=false;p_id=P5054;gene_id=YJL012C;tss_id=TSS2863;nbOverlaps=0;ID=YJL012C;Name=VTC4
VII	S-MART	transcript	1063813	1064940	.	-	.	seqedit=false;p_id=P5068;gene_id=YGR286C;tss_id=TSS296;nbOverlaps=0;ID=YGR286C;Name=BIO2
XIII	S-MART	transcript	426712	429627	.	-	.	seqedit=false;p_id=P1761;gene_id=YMR080C;tss_id=TSS5749;nbOverlaps=0;ID=YMR080C;Name=NAM7
XIII	S-MART	transcript	430079	431095	.	-	.	seqedit=false;p_id=P6440;gene_id=YMR081C;tss_id=TSS3494;nbOverlaps=0;ID=YMR081C;Name=ISF1
II	S-MART	transcript	289445	290350	.	+	.	seqedit=false;p_id=P3983;gene_id=YBR024W;tss_id=TSS7011;nbOverlaps=0;ID=YBR024W;Name=SCO2
XIII	S-MART	transcript	434788	435915	.	+	.	seqedit=false;p_id=P2661;gene_id=YMR083W;tss_id=TSS6298;nbOverlaps=0;ID=YMR083W;Name=ADH3
XIII	S-MART	transcript	431769	432125	.	-	.	seqedit=false;p_id=P3193;gene_id=YMR082C;tss_id=TSS5292;nbOverlaps=0;ID=YMR082C;Name=YMR082C
XIII	S-MART	transcript	442026	442364	.	-	.	seqedit=false;p_id=P2287;gene_id=YMR086C-A;tss_id=TSS576;nbOverlaps=0;ID=YMR086C-A;Name=YMR086C-A
XIII	S-MART	transcript	436628	437416	.	+	.	seqedit=false;p_id=P1101;gene_id=YMR084W;tss_id=TSS2103;nbOverlaps=0;ID=YMR084W;Name=YMR084W
VII	S-MART	transcript	1080306	1080668	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0--HWUSI-EAS1656_0009_FC:3:90:14589:7302#0;p_id=P3984;gene_id=YGR294W;tss_id=TSS974;nbOverlaps=2;ID=YGR294W;Name=PAU12
XV	S-MART	transcript	671845	672411	.	-	.	seqedit=false;p_id=P4554;gene_id=YOR179C;tss_id=TSS2330;nbOverlaps=0;ID=YOR179C;Name=SYC1
VII	S-MART	transcript	1079885	1080346	.	-	.	seqedit=false;p_id=P6649;gene_id=YGR293C;tss_id=TSS3954;nbOverlaps=0;ID=YGR293C;Name=YGR293C
III	S-MART	transcript	154012	154659	.	-	.	seqedit=false;p_id=P771;gene_id=YCR020C;tss_id=TSS1352;nbOverlaps=0;ID=YCR020C;Name=PET18
VII	S-MART	transcript	1081584	1082729	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:3228:21056#0--HWUSI-EAS1656_0009_FC:3:109:11664:6322#0--HWUSI-EAS1656_00;p_id=P804;gene_id=YGR295C;tss_id=TSS768;nbOverlaps=15;ID=YGR295C;Name=COS6
XIII	S-MART	transcript	442527	443381	.	+	.	seqedit=false;p_id=P6531;gene_id=YMR087W;tss_id=TSS5788;nbOverlaps=0;ID=YMR087W;Name=YMR087W
XIII	S-MART	transcript	445609	448086	.	-	.	seqedit=false;p_id=P1643;gene_id=YMR089C;tss_id=TSS6685;nbOverlaps=0;ID=YMR089C;Name=YTA12
XIII	S-MART	transcript	450058	451365	.	-	.	seqedit=false;p_id=P4831;gene_id=YMR091C;tss_id=TSS5218;nbOverlaps=0;ID=YMR091C;Name=NPL6
XIII	S-MART	transcript	449245	449928	.	+	.	seqedit=false;p_id=P1293;gene_id=YMR090W;tss_id=TSS5724;nbOverlaps=0;ID=YMR090W;Name=YMR090W
XIII	S-MART	transcript	451632	453479	.	-	.	seqedit=false;p_id=P1468;gene_id=YMR092C;tss_id=TSS4482;nbOverlaps=0;ID=YMR092C;Name=AIP1
II	S-MART	transcript	292877	294019	.	-	.	seqedit=false;p_id=P814;gene_id=YBR026C;tss_id=TSS4345;nbOverlaps=0;ID=YBR026C;Name=ETR1
VIII	S-MART	transcript	104277	105091	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:15319:21062#0--HWUSI-EAS1656_0009_FC:3:112:14471:19036#0--HWUSI-EAS1656_0;p_id=P35;gene_id=YHL001W;tss_id=TSS1048;nbOverlaps=4582;ID=YHL001W;Name=RPL14B
VIII	S-MART	exon	104277	104405	.	+	.	ID=YHL001W-exon1;Name=RPL14B-exon1;Parent=YHL001W
VIII	S-MART	exon	104804	105091	.	+	.	ID=YHL001W-exon2;Name=RPL14B-exon2;Parent=YHL001W
XIII	S-MART	transcript	455825	457261	.	+	.	seqedit=false;p_id=P6326;gene_id=YMR094W;tss_id=TSS438;nbOverlaps=0;ID=YMR094W;Name=CTF13
XIII	S-MART	transcript	457285	457959	.	-	.	seqedit=false;p_id=P750;gene_id=YMR095C;tss_id=TSS4474;nbOverlaps=0;ID=YMR095C;Name=SNO1
VIII	S-MART	transcript	102587	103075	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:10135:2162#0--HWUSI-EAS1656_0009_FC:3:21:12161:14152#0--HWUSI-EAS1656_000;p_id=P66;gene_id=YHL002C-A;tss_id=TSS6587;nbOverlaps=22;ID=YHL002C-A;Name=YHL002C-A
VIII	S-MART	transcript	102612	103970	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:10135:2162#0--HWUSI-EAS1656_0009_FC:3:21:12161:14152#0--HWUSI-EAS1656_000;p_id=P3907;gene_id=YHL002W;tss_id=TSS6821;nbOverlaps=82;ID=YHL002W;Name=HSE1
VIII	S-MART	transcript	100648	101883	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:17492:14447#0--HWUSI-EAS1656_0009_FC:3:40:1651:4918#0--HWUSI-EAS1656_0009;p_id=P5010;gene_id=YHL003C;tss_id=TSS1086;nbOverlaps=1011;ID=YHL003C;Name=LAG1
III	S-MART	transcript	155320	155556	.	+	.	seqedit=false;p_id=P5582;gene_id=YCR020W-B;tss_id=TSS1399;nbOverlaps=0;ID=YCR020W-B;Name=HTL1
XIII	S-MART	transcript	466300	468162	.	+	.	seqedit=false;p_id=P5766;gene_id=YMR100W;tss_id=TSS4723;nbOverlaps=0;ID=YMR100W;Name=MUB1
VIII	S-MART	transcript	98343	98795	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:3461:4186#0--HWUSI-EAS1656_0009_FC:3:53:7472:16983#0--HWUSI-EAS1656_0009_F;p_id=P3097;gene_id=YHL006C;tss_id=TSS4301;nbOverlaps=29;ID=YHL006C;Name=SHU1
XII	S-MART	transcript	712537	713158	.	-	.	seqedit=false;p_id=P3028;gene_id=YLR287C-A;tss_id=TSS6176;nbOverlaps=0;ID=YLR287C-A;Name=RPS30A
XII	S-MART	exon	712537	712725	.	-	.	ID=YLR287C-A-exon1;Name=RPS30A-exon1;Parent=YLR287C-A
XII	S-MART	exon	713156	713158	.	-	.	ID=YLR287C-A-exon2;Name=RPS30A-exon2;Parent=YLR287C-A
VII	S-MART	transcript	383654	384766	.	+	.	seqedit=false;p_id=P6291;gene_id=YGL063W;tss_id=TSS1684;nbOverlaps=0;ID=YGL063W;Name=PUS2
VIII	S-MART	transcript	98828	99220	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:17544:16139#0--HWUSI-EAS1656_0009_FC:3:31:17585:2106#0--HWUSI-EAS1656_000;p_id=P1622;gene_id=YHL005C;tss_id=TSS4618;nbOverlaps=4;ID=YHL005C;Name=YHL005C
XIII	S-MART	transcript	473420	475453	.	-	.	seqedit=false;p_id=P3739;gene_id=YMR104C;tss_id=TSS2424;nbOverlaps=0;ID=YMR104C;Name=YPK2
XIII	S-MART	transcript	469848	472352	.	-	.	seqedit=false;p_id=P779;gene_id=YMR102C;tss_id=TSS3727;nbOverlaps=0;ID=YMR102C;Name=YMR102C
VIII	S-MART	transcript	84068	85060	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:8911:9128#0--HWUSI-EAS1656_0009_FC:3:69:4064:12063#0--HWUSI-EAS1656_0009_;p_id=P1341;gene_id=YHL009C;tss_id=TSS6212;nbOverlaps=49;ID=YHL009C;Name=YAP3
III	S-MART	transcript	156109	157107	.	-	.	seqedit=false;p_id=P2022;gene_id=YCR021C;tss_id=TSS3028;nbOverlaps=0;ID=YCR021C;Name=HSP30
XIII	S-MART	transcript	475897	477606	.	-	.	seqedit=false;p_id=P1816;gene_id=YMR105C;tss_id=TSS1273;nbOverlaps=0;ID=YMR105C;Name=PGM2
XIII	S-MART	transcript	478064	478258	.	+	.	seqedit=false;p_id=P3853;gene_id=YMR105W-A;tss_id=TSS3763;nbOverlaps=0;ID=YMR105W-A;Name=YMR105W-A
VIII	S-MART	transcript	85909	91318	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:19234:19292#0--HWUSI-EAS1656_0009_FC:3:29:6806:21385#0--HWUSI-EAS1656_0009;p_id=P892;gene_id=YHL009W-B;tss_id=TSS6151;nbOverlaps=85;ID=YHL009W-B;Name=YHL009W-B
VIII	S-MART	exon	85909	86994	.	+	.	ID=YHL009W-B-exon1;Name=YHL009W-B-exon1;Parent=YHL009W-B
VIII	S-MART	exon	86996	91318	.	+	.	ID=YHL009W-B-exon2;Name=YHL009W-B-exon2;Parent=YHL009W-B
X	S-MART	transcript	409493	411040	.	-	.	seqedit=false;p_id=P1195;gene_id=YJL013C;tss_id=TSS4313;nbOverlaps=0;ID=YJL013C;Name=MAD3
XIII	S-MART	transcript	483014	483361	.	+	.	seqedit=false;p_id=P2774;gene_id=YMR107W;tss_id=TSS6982;nbOverlaps=0;ID=YMR107W;Name=SPG4
XIII	S-MART	transcript	484084	486147	.	+	.	seqedit=false;p_id=P2138;gene_id=YMR108W;tss_id=TSS2728;nbOverlaps=0;ID=YMR108W;Name=ILV2
XIII	S-MART	transcript	486587	490246	.	+	.	seqedit=false;p_id=P868;gene_id=YMR109W;tss_id=TSS818;nbOverlaps=0;ID=YMR109W;Name=MYO5
II	S-MART	transcript	296369	297742	.	-	.	seqedit=false;p_id=P1493;gene_id=YBR029C;tss_id=TSS1082;nbOverlaps=0;ID=YBR029C;Name=CDS1
XIII	S-MART	transcript	490394	491992	.	-	.	seqedit=false;p_id=P5123;gene_id=YMR110C;tss_id=TSS6857;nbOverlaps=0;ID=YMR110C;Name=HFD1
XIII	S-MART	transcript	494100	494495	.	-	.	seqedit=false;p_id=P5935;gene_id=YMR112C;tss_id=TSS1287;nbOverlaps=0;ID=YMR112C;Name=MED11
XIII	S-MART	transcript	492404	493792	.	-	.	seqedit=false;p_id=P2472;gene_id=YMR111C;tss_id=TSS5559;nbOverlaps=0;ID=YMR111C;Name=YMR111C
XIII	S-MART	transcript	494999	496282	.	+	.	seqedit=false;p_id=P4188;gene_id=YMR113W;tss_id=TSS6980;nbOverlaps=0;ID=YMR113W;Name=FOL3
XIII	S-MART	transcript	497704	499209	.	+	.	seqedit=false;p_id=P3455;gene_id=YMR115W;tss_id=TSS1067;nbOverlaps=0;ID=YMR115W;Name=MGR3
XIII	S-MART	transcript	496343	497449	.	-	.	seqedit=false;p_id=P1998;gene_id=YMR114C;tss_id=TSS341;nbOverlaps=0;ID=YMR114C;Name=YMR114C
III	S-MART	transcript	157421	157765	.	-	.	seqedit=false;p_id=P1968;gene_id=YCR022C;tss_id=TSS6061;nbOverlaps=0;ID=YCR022C;Name=YCR022C
XIII	S-MART	transcript	499456	500688	.	-	.	seqedit=false;p_id=P2911;gene_id=YMR116C;tss_id=TSS952;nbOverlaps=0;ID=YMR116C;Name=ASC1
XIII	S-MART	exon	499456	499878	.	-	.	ID=YMR116C-exon1;Name=ASC1-exon1;Parent=YMR116C
XIII	S-MART	exon	500152	500688	.	-	.	ID=YMR116C-exon2;Name=ASC1-exon2;Parent=YMR116C
VIII	S-MART	transcript	67731	69548	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:14663:8294#0--HWUSI-EAS1656_0009_FC:3:109:15152:21080#0--HWUSI-EAS1656_000;p_id=P1275;gene_id=YHL019C;tss_id=TSS1677;nbOverlaps=115;ID=YHL019C;Name=APM2
VIII	S-MART	transcript	70276	71874	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:2560:19205#0--HWUSI-EAS1656_0009_FC:3:107:9048:5731#0--HWUSI-EAS1656_0009;p_id=P1403;gene_id=YHL017W;tss_id=TSS4778;nbOverlaps=529;ID=YHL017W;Name=YHL017W
XIII	S-MART	transcript	501250	501891	.	-	.	seqedit=false;p_id=P1147;gene_id=YMR117C;tss_id=TSS106;nbOverlaps=0;ID=YMR117C;Name=SPC24
XIII	S-MART	transcript	505333	507207	.	+	.	seqedit=false;p_id=P1795;gene_id=YMR119W;tss_id=TSS2396;nbOverlaps=0;ID=YMR119W;Name=ASI1
VIII	S-MART	transcript	66242	67456	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:17936:8552#0--HWUSI-EAS1656_0009_FC:3:107:14058:6867#0--HWUSI-EAS1656_00;p_id=P67;gene_id=YHL020C;tss_id=TSS129;nbOverlaps=422;ID=YHL020C;Name=OPI1
III	S-MART	transcript	158538	160373	.	-	.	seqedit=false;p_id=P3574;gene_id=YCR023C;tss_id=TSS1950;nbOverlaps=0;ID=YCR023C;Name=YCR023C
XIII	S-MART	transcript	506996	507370	.	+	.	seqedit=false;p_id=P6686;gene_id=YMR119W-A;tss_id=TSS409;nbOverlaps=0;ID=YMR119W-A;Name=YMR119W-A
XIII	S-MART	transcript	507502	509280	.	-	.	seqedit=false;p_id=P5128;gene_id=YMR120C;tss_id=TSS2341;nbOverlaps=0;ID=YMR120C;Name=ADE17
III	S-MART	transcript	162945	163067	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:1945:3203#0;p_id=P6148;gene_id=YCR024C-A;tss_id=TSS6426;nbOverlaps=1;ID=YCR024C-A;Name=PMP1
XV	S-MART	transcript	288898	290553	.	+	.	seqedit=false;p_id=P2086;gene_id=YOL019W;tss_id=TSS1510;nbOverlaps=0;ID=YOL019W;Name=YOL019W
III	S-MART	transcript	162599	162865	.	-	.	seqedit=false;p_id=P625;gene_id=YCR024C-B;tss_id=TSS3375;nbOverlaps=0;ID=YCR024C-B;Name=YCR024C-B
XV	S-MART	transcript	286172	287950	.	+	.	seqedit=false;p_id=P2731;gene_id=YOL020W;tss_id=TSS5753;nbOverlaps=0;ID=YOL020W;Name=TAT2
II	S-MART	transcript	304930	305976	.	-	.	seqedit=false;p_id=P3658;gene_id=YBR034C;tss_id=TSS6792;nbOverlaps=0;ID=YBR034C;Name=HMT1
XV	S-MART	transcript	282421	285426	.	-	.	seqedit=false;p_id=P4466;gene_id=YOL021C;tss_id=TSS1753;nbOverlaps=0;ID=YOL021C;Name=DIS3
V	S-MART	transcript	86937	89852	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:64:2928:6377#0--HWUSI-EAS1656_0009_FC:3:8:18416:13249#0--HWUSI-EAS1656_0009_;p_id=P3304;gene_id=YEL032W;tss_id=TSS6521;nbOverlaps=480;ID=YEL032W;Name=MCM3
XV	S-MART	transcript	280272	281498	.	-	.	seqedit=false;p_id=P5274;gene_id=YOL022C;tss_id=TSS3399;nbOverlaps=0;ID=YOL022C;Name=TSR4
V	S-MART	transcript	86179	86598	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:93:8634:10923#0--HWUSI-EAS1656_0009_FC:3:50:19455:18842#0--HWUSI-EAS1656_000;p_id=P752;gene_id=YEL033W;tss_id=TSS5924;nbOverlaps=560;ID=YEL033W;Name=MTC7
XV	S-MART	transcript	278056	280086	.	+	.	seqedit=false;p_id=P2600;gene_id=YOL023W;tss_id=TSS2660;nbOverlaps=0;ID=YOL023W;Name=IFM1
V	S-MART	transcript	85613	86215	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:9183:2608#0--HWUSI-EAS1656_0009_FC:3:17:12274:21319#0--HWUSI-EAS1656_0009;p_id=P4179;gene_id=YEL034C-A;tss_id=TSS6927;nbOverlaps=8490;ID=YEL034C-A;Name=YEL034C-A
XV	S-MART	transcript	274957	276939	.	+	.	seqedit=false;p_id=P277;gene_id=YOL025W;tss_id=TSS4622;nbOverlaps=0;ID=YOL025W;Name=LAG2
V	S-MART	transcript	85676	86149	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:9183:2608#0--HWUSI-EAS1656_0009_FC:3:17:12274:21319#0--HWUSI-EAS1656_0009;p_id=P2575;gene_id=YEL034W;tss_id=TSS1996;nbOverlaps=8182;ID=YEL034W;Name=HYP2
XVI	S-MART	transcript	243206	244027	.	-	.	seqedit=false;p_id=P1464;gene_id=YPL162C;tss_id=TSS1543;nbOverlaps=0;ID=YPL162C;Name=YPL162C
XV	S-MART	transcript	277086	277604	.	+	.	seqedit=false;p_id=P2067;gene_id=YOL024W;tss_id=TSS1348;nbOverlaps=0;ID=YOL024W;Name=YOL024W
II	S-MART	transcript	315575	316510	.	+	.	seqedit=false;p_id=P1886;gene_id=YBR039W;tss_id=TSS2110;nbOverlaps=0;ID=YBR039W;Name=ATP3
XV	S-MART	transcript	274012	274353	.	-	.	seqedit=false;p_id=P65;gene_id=YOL026C;tss_id=TSS5254;nbOverlaps=0;ID=YOL026C;Name=MIM1
XV	S-MART	transcript	678191	678793	.	-	.	seqedit=false;p_id=P2150;gene_id=YOR182C;tss_id=TSS6413;nbOverlaps=0;ID=YOR182C;Name=RPS30B
XV	S-MART	exon	678191	678379	.	-	.	ID=YOR182C-exon1;Name=RPS30B-exon1;Parent=YOR182C
XV	S-MART	exon	678791	678793	.	-	.	ID=YOR182C-exon2;Name=RPS30B-exon2;Parent=YOR182C
II	S-MART	transcript	316968	317864	.	+	.	seqedit=false;p_id=P6199;gene_id=YBR040W;tss_id=TSS1128;nbOverlaps=0;ID=YBR040W;Name=FIG1
XIII	S-MART	transcript	196068	196170	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:117:2658:8624#0--HWUSI-EAS1656_000;gene_id=tP(UGG)M;tss_id=TSS492;nbOverlaps=2342;ID=tP(UGG)M;Name=SUF7
XIII	S-MART	exon	196068	196103	.	-	.	ID=tP(UGG)M-exon1;Name=SUF7-exon1;Parent=tP(UGG)M
XIII	S-MART	exon	196135	196170	.	-	.	ID=tP(UGG)M-exon2;Name=SUF7-exon2;Parent=tP(UGG)M
XV	S-MART	transcript	272003	273724	.	-	.	seqedit=false;p_id=P3318;gene_id=YOL027C;tss_id=TSS4655;nbOverlaps=0;ID=YOL027C;Name=MDM38
V	S-MART	transcript	81407	82603	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:16973:12477#0--HWUSI-EAS1656_0009_FC:3:30:16240:10520#0--HWUSI-EAS1656_0;p_id=P3483;gene_id=YEL037C;tss_id=TSS1091;nbOverlaps=127;ID=YEL037C;Name=RAD23
XV	S-MART	transcript	270633	271370	.	-	.	seqedit=false;p_id=P27;gene_id=YOL028C;tss_id=TSS1558;nbOverlaps=0;ID=YOL028C;Name=YAP7
V	S-MART	transcript	80462	81145	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:16:19711:11590#0--HWUSI-EAS1656_0009_FC:3:116:12140:3259#0--HWUSI-EAS1656_00;p_id=P6278;gene_id=YEL038W;tss_id=TSS915;nbOverlaps=355;ID=YEL038W;Name=UTR4
XVI	S-MART	transcript	364386	364727	.	-	.	seqedit=false;p_id=P5642;gene_id=YPL098C;tss_id=TSS3014;nbOverlaps=0;ID=YPL098C;Name=MGR2
XV	S-MART	transcript	268187	269641	.	+	.	seqedit=false;p_id=P244;gene_id=YOL030W;tss_id=TSS150;nbOverlaps=0;ID=YOL030W;Name=GAS5
II	S-MART	transcript	321876	323945	.	-	.	seqedit=false;p_id=P2604;gene_id=YBR043C;tss_id=TSS1250;nbOverlaps=0;ID=YBR043C;Name=QDR3
XVI	S-MART	transcript	239350	241497	.	-	.	seqedit=false;p_id=P3136;gene_id=YPL164C;tss_id=TSS5043;nbOverlaps=0;ID=YPL164C;Name=MLH3
XV	S-MART	transcript	586981	589281	.	+	.	seqedit=false;p_id=P418;gene_id=YOR140W;tss_id=TSS4320;nbOverlaps=0;ID=YOR140W;Name=SFL1
XV	S-MART	transcript	269815	270420	.	-	.	seqedit=false;p_id=P594;gene_id=YOL029C;tss_id=TSS4107;nbOverlaps=0;ID=YOL029C;Name=YOL029C
XVI	S-MART	transcript	648704	649921	.	+	.	seqedit=false;p_id=P4330;gene_id=YPR041W;tss_id=TSS4265;nbOverlaps=0;ID=YPR041W;Name=TIF5
III	S-MART	transcript	179520	186023	.	+	.	seqedit=false;p_id=P4263;gene_id=YCR032W;tss_id=TSS6230;nbOverlaps=0;ID=YCR032W;Name=BPH1
V	S-MART	transcript	354934	355005	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)E2;tss_id=TSS4790;nbOverlaps=1964;ID=tE(UUC)E2;Name=tE(UUC)E2
II	S-MART	transcript	330507	331511	.	-	.	seqedit=false;p_id=P1654;gene_id=YBR046C;tss_id=TSS1530;nbOverlaps=0;ID=YBR046C;Name=ZTA1
XV	S-MART	transcript	263475	265085	.	+	.	seqedit=false;p_id=P6584;gene_id=YOL033W;tss_id=TSS2913;nbOverlaps=0;ID=YOL033W;Name=MSE1
II	S-MART	transcript	331833	332360	.	+	.	seqedit=false;p_id=P6269;gene_id=YBR047W;tss_id=TSS6077;nbOverlaps=0;ID=YBR047W;Name=FMP23
XII	S-MART	transcript	713480	714904	.	-	.	seqedit=false;p_id=P2735;gene_id=YLR288C;tss_id=TSS1279;nbOverlaps=0;ID=YLR288C;Name=MEC3
XV	S-MART	transcript	259923	263204	.	+	.	seqedit=false;p_id=P2122;gene_id=YOL034W;tss_id=TSS1312;nbOverlaps=0;ID=YOL034W;Name=SMC5
II	S-MART	transcript	332831	333812	.	+	.	seqedit=false;p_id=P4091;gene_id=YBR048W;tss_id=TSS5616;nbOverlaps=0;ID=YBR048W;Name=RPS11B
II	S-MART	exon	332831	332875	.	+	.	ID=YBR048W-exon1;Name=RPS11B-exon1;Parent=YBR048W
II	S-MART	exon	333387	333812	.	+	.	ID=YBR048W-exon2;Name=RPS11B-exon2;Parent=YBR048W
XVI	S-MART	transcript	237956	239077	.	-	.	seqedit=false;p_id=P513;gene_id=YPL165C;tss_id=TSS4457;nbOverlaps=0;ID=YPL165C;Name=SET6
XV	S-MART	transcript	254926	255021	.	-	.	seqedit=false;p_id=P4476;gene_id=YOL038C-A;tss_id=TSS5442;nbOverlaps=0;ID=YOL038C-A;Name=YOL038C-A
III	S-MART	transcript	193297	194298	.	+	.	seqedit=false;p_id=P3729;gene_id=YCR036W;tss_id=TSS3526;nbOverlaps=0;ID=YCR036W;Name=RBK1
XV	S-MART	transcript	258803	259105	.	-	.	seqedit=false;p_id=P4136;gene_id=YOL035C;tss_id=TSS6073;nbOverlaps=0;ID=YOL035C;Name=YOL035C
V	S-MART	transcript	68840	69265	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:15750:1295#0--HWUSI-EAS1656_0009_FC:3:68:9773:17125#0--HWUSI-EAS1656_0009;p_id=P2699;gene_id=YEL045C;tss_id=TSS4122;nbOverlaps=5;ID=YEL045C;Name=YEL045C
XV	S-MART	transcript	256745	259030	.	+	.	seqedit=false;p_id=P3550;gene_id=YOL036W;tss_id=TSS6913;nbOverlaps=0;ID=YOL036W;Name=YOL036W
II	S-MART	transcript	334386	336818	.	-	.	seqedit=false;p_id=P5465;gene_id=YBR049C;tss_id=TSS701;nbOverlaps=0;ID=YBR049C;Name=REB1
XVI	S-MART	transcript	656799	657344	.	+	.	seqedit=false;p_id=P199;gene_id=YPR046W;tss_id=TSS4317;nbOverlaps=0;ID=YPR046W;Name=MCM16
XV	S-MART	transcript	256666	257019	.	-	.	seqedit=false;p_id=P4769;gene_id=YOL037C;tss_id=TSS3038;nbOverlaps=0;ID=YOL037C;Name=YOL037C
II	S-MART	transcript	337183	338199	.	-	.	seqedit=false;p_id=P2824;gene_id=YBR050C;tss_id=TSS870;nbOverlaps=0;ID=YBR050C;Name=REG2
XV	S-MART	transcript	255337	256101	.	+	.	seqedit=false;p_id=P920;gene_id=YOL038W;tss_id=TSS4757;nbOverlaps=0;ID=YOL038W;Name=PRE6
XVI	S-MART	transcript	237338	237979	.	+	.	seqedit=false;p_id=P3758;gene_id=YPL166W;tss_id=TSS4503;nbOverlaps=0;ID=YPL166W;Name=ATG29
XV	S-MART	transcript	254297	254617	.	+	.	seqedit=false;p_id=P2289;gene_id=YOL039W;tss_id=TSS5861;nbOverlaps=0;ID=YOL039W;Name=RPP2A
X	S-MART	transcript	402897	404945	.	+	.	seqedit=false;p_id=P6457;gene_id=YJL019W;tss_id=TSS890;nbOverlaps=0;ID=YJL019W;Name=MPS3
XV	S-MART	transcript	253149	253577	.	-	.	seqedit=false;p_id=P5461;gene_id=YOL040C;tss_id=TSS1899;nbOverlaps=0;ID=YOL040C;Name=RPS15
XV	S-MART	transcript	678872	679261	.	+	.	seqedit=false;p_id=P1145;gene_id=YOR183W;tss_id=TSS5504;nbOverlaps=0;ID=YOR183W;Name=FYV12
X	S-MART	transcript	407142	407426	.	-	.	seqedit=false;p_id=P3069;gene_id=YJL015C;tss_id=TSS1511;nbOverlaps=0;ID=YJL015C;Name=YJL015C
XV	S-MART	transcript	251267	252646	.	-	.	seqedit=false;p_id=P4966;gene_id=YOL041C;tss_id=TSS2677;nbOverlaps=0;ID=YOL041C;Name=NOP12
XII	S-MART	transcript	573466	573918	.	-	.	seqedit=false;p_id=P5284;gene_id=YLR218C;tss_id=TSS4117;nbOverlaps=0;ID=YLR218C;Name=COA4
XV	S-MART	transcript	249825	250916	.	+	.	seqedit=false;p_id=P1671;gene_id=YOL042W;tss_id=TSS3442;nbOverlaps=0;ID=YOL042W;Name=NGL1
XII	S-MART	transcript	572909	573232	.	+	.	seqedit=false;p_id=P104;gene_id=YLR217W;tss_id=TSS6092;nbOverlaps=0;ID=YLR217W;Name=YLR217W
XV	S-MART	transcript	248392	249534	.	-	.	seqedit=false;p_id=P4946;gene_id=YOL043C;tss_id=TSS5042;nbOverlaps=0;ID=YOL043C;Name=NTG2
X	S-MART	transcript	400981	401238	.	+	.	seqedit=false;p_id=P787;gene_id=YJL020W-A;tss_id=TSS2333;nbOverlaps=0;ID=YJL020W-A;Name=YJL020W-A
XVI	S-MART	transcript	232593	237107	.	-	.	seqedit=false;p_id=P731;gene_id=YPL167C;tss_id=TSS2926;nbOverlaps=0;ID=YPL167C;Name=REV3
XV	S-MART	transcript	247150	248301	.	+	.	seqedit=false;p_id=P2578;gene_id=YOL044W;tss_id=TSS494;nbOverlaps=0;ID=YOL044W;Name=PEX15
X	S-MART	transcript	397355	398398	.	-	.	seqedit=false;p_id=P1104;gene_id=YJL023C;tss_id=TSS1948;nbOverlaps=0;ID=YJL023C;Name=PET130
XV	S-MART	transcript	243497	246802	.	+	.	seqedit=false;p_id=P5219;gene_id=YOL045W;tss_id=TSS4335;nbOverlaps=0;ID=YOL045W;Name=PSK2
XV	S-MART	transcript	679357	680544	.	+	.	seqedit=false;p_id=P268;gene_id=YOR184W;tss_id=TSS17;nbOverlaps=0;ID=YOR184W;Name=SER1
XII	S-MART	transcript	578362	579024	.	-	.	seqedit=false;p_id=P5949;gene_id=YLR221C;tss_id=TSS3434;nbOverlaps=0;ID=YLR221C;Name=RSA3
XV	S-MART	transcript	240204	241310	.	-	.	seqedit=false;p_id=P3104;gene_id=YOL048C;tss_id=TSS2195;nbOverlaps=0;ID=YOL048C;Name=RRT8
XV	S-MART	exon	240204	240947	.	-	.	ID=YOL048C-exon1;Name=RRT8-exon1;Parent=YOL048C
XV	S-MART	exon	241026	241310	.	-	.	ID=YOL048C-exon2;Name=RRT8-exon2;Parent=YOL048C
XIV	S-MART	transcript	338478	339347	.	-	.	seqedit=false;p_id=P1828;gene_id=YNL159C;tss_id=TSS3980;nbOverlaps=0;ID=YNL159C;Name=ASI2
XV	S-MART	transcript	243466	244140	.	-	.	seqedit=false;p_id=P3131;gene_id=YOL046C;tss_id=TSS4284;nbOverlaps=0;ID=YOL046C;Name=YOL046C
XII	S-MART	transcript	582006	582236	.	-	.	seqedit=false;p_id=P6504;gene_id=YLR222C-A;tss_id=TSS2871;nbOverlaps=0;ID=YLR222C-A;Name=YLR222C-A
XII	S-MART	transcript	717145	717978	.	-	.	seqedit=false;p_id=P5737;gene_id=YLR290C;tss_id=TSS4803;nbOverlaps=0;ID=YLR290C;Name=YLR290C
XIV	S-MART	transcript	332597	334867	.	+	.	seqedit=false;p_id=P2922;gene_id=YNL161W;tss_id=TSS829;nbOverlaps=0;ID=YNL161W;Name=CBK1
XVI	S-MART	transcript	229039	230838	.	-	.	seqedit=false;p_id=P3049;gene_id=YPL169C;tss_id=TSS7057;nbOverlaps=0;ID=YPL169C;Name=MEX67
V	S-MART	transcript	63728	64090	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:5142:20127#0--HWUSI-EAS1656_0009_FC:3:79:11747:21301#0--HWUSI-EAS1656_000;p_id=P5810;gene_id=YEL049W;tss_id=TSS6610;nbOverlaps=15;ID=YEL049W;Name=PAU2
V	S-MART	transcript	59670	60851	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:66:11576:17666#0--HWUSI-EAS1656_0009_FC:3:75:14691:15537#0--HWUSI-EAS1656_00;p_id=P4543;gene_id=YEL050C;tss_id=TSS6085;nbOverlaps=140;ID=YEL050C;Name=RML2
V	S-MART	transcript	59549	59740	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:4701:13149#0--HWUSI-EAS1656_0009_FC:3:24:6465:17447#0--HWUSI-EAS1656_0009;p_id=P5657;gene_id=YEL050W-A;tss_id=TSS5036;nbOverlaps=22;ID=YEL050W-A;Name=YEL050W-A
XII	S-MART	transcript	589354	590541	.	+	.	seqedit=false;p_id=P5888;gene_id=YLR226W;tss_id=TSS6979;nbOverlaps=0;ID=YLR226W;Name=BUR2
V	S-MART	transcript	58378	59148	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:15334:16622#0--HWUSI-EAS1656_0009_FC:3:50:8671:1820#0--HWUSI-EAS1656_0009;p_id=P6554;gene_id=YEL051W;tss_id=TSS2922;nbOverlaps=976;ID=YEL051W;Name=VMA8
V	S-MART	transcript	56571	58100	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:17351:6517#0--HWUSI-EAS1656_0009_FC:3:2:16516:19688#0--HWUSI-EAS1656_000;p_id=P1304;gene_id=YEL052W;tss_id=TSS2634;nbOverlaps=290;ID=YEL052W;Name=AFG1
V	S-MART	transcript	53901	56102	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:2645:3111#0--HWUSI-EAS1656_0009_FC:3:71:16056:16286#0--HWUSI-EAS1656_0009;p_id=P3284;gene_id=YEL053C;tss_id=TSS3047;nbOverlaps=243;ID=YEL053C;Name=MAK10
V	S-MART	transcript	52908	53255	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:15549:10307#0--HWUSI-EAS1656_0009_FC:3:57:4557:5682#0--HWUSI-EAS1656_0009;p_id=P6292;gene_id=YEL053W-A;tss_id=TSS900;nbOverlaps=2704;ID=YEL053W-A;Name=YEL053W-A
V	S-MART	transcript	52721	53218	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:15549:10307#0--HWUSI-EAS1656_0009_FC:3:54:6947:8937#0--HWUSI-EAS1656_0009;p_id=P730;gene_id=YEL054C;tss_id=TSS2417;nbOverlaps=3796;ID=YEL054C;Name=RPL12A
V	S-MART	transcript	48471	51539	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:46:16771:3811#0--HWUSI-EAS1656_0009_FC:3:101:14618:13172#0--HWUSI-EAS1656_00;p_id=P1635;gene_id=YEL055C;tss_id=TSS4337;nbOverlaps=1102;ID=YEL055C;Name=POL5
XII	S-MART	transcript	586464	587573	.	+	.	seqedit=false;p_id=P5250;gene_id=YLR224W;tss_id=TSS4196;nbOverlaps=0;ID=YLR224W;Name=YLR224W
V	S-MART	transcript	47168	48373	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:10028:19576#0--HWUSI-EAS1656_0009_FC:3:36:16910:4029#0--HWUSI-EAS1656_000;p_id=P5262;gene_id=YEL056W;tss_id=TSS6237;nbOverlaps=143;ID=YEL056W;Name=HAT2
V	S-MART	transcript	43252	44925	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:4295:18572#0--HWUSI-EAS1656_0009_FC:3:55:18530:18960#0--HWUSI-EAS1656_000;p_id=P5598;gene_id=YEL058W;tss_id=TSS1419;nbOverlaps=1087;ID=YEL058W;Name=PCM1
V	S-MART	transcript	45020	45721	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:18583:9526#0--HWUSI-EAS1656_0009_FC:3:16:15409:14252#0--HWUSI-EAS1656_000;p_id=P5769;gene_id=YEL057C;tss_id=TSS6331;nbOverlaps=6;ID=YEL057C;Name=YEL057C
V	S-MART	transcript	42400	42624	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:3346:21084#0--HWUSI-EAS1656_0009_FC:3:83:4011:19150#0--HWUSI-EAS1656_0009;p_id=P5803;gene_id=YEL059C-A;tss_id=TSS2919;nbOverlaps=9;ID=YEL059C-A;Name=SOM1
V	S-MART	transcript	42652	42960	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:2839:16709#0--HWUSI-EAS1656_0009_FC:3:18:18181:7230#0--HWUSI-EAS1656_0009;p_id=P3036;gene_id=YEL059W;tss_id=TSS5099;nbOverlaps=3;ID=YEL059W;Name=HHY1
V	S-MART	transcript	40046	41953	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:93:14595:19699#0--HWUSI-EAS1656_0009_FC:3:120:12878:16506#0--HWUSI-EAS1656_0;p_id=P2279;gene_id=YEL060C;tss_id=TSS4415;nbOverlaps=490;ID=YEL060C;Name=PRB1
XII	S-MART	transcript	587695	588918	.	-	.	seqedit=false;p_id=P228;gene_id=YLR225C;tss_id=TSS698;nbOverlaps=0;ID=YLR225C;Name=YLR225C
V	S-MART	transcript	36535	39537	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:17575:5106#0--HWUSI-EAS1656_0009_FC:3:12:9527:4643#0--HWUSI-EAS1656_0009_;p_id=P2870;gene_id=YEL061C;tss_id=TSS6399;nbOverlaps=117;ID=YEL061C;Name=CIN8
V	S-MART	transcript	34407	36254	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:6285:11284#0--HWUSI-EAS1656_0009_FC:3:91:7755:17388#0--HWUSI-EAS1656_0009;p_id=P4503;gene_id=YEL062W;tss_id=TSS5904;nbOverlaps=64;ID=YEL062W;Name=NPR2
V	S-MART	transcript	31694	33466	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:5207:9904#0--HWUSI-EAS1656_0009_FC:3:94:4030:16221#0--HWUSI-EAS1656_0009_;p_id=P5003;gene_id=YEL063C;tss_id=TSS5478;nbOverlaps=463;ID=YEL063C;Name=CAN1
VII	S-MART	transcript	440716	440807	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)G;tss_id=TSS2286;nbOverlaps=184;ID=tF(GAA)G;Name=tF(GAA)G
VII	S-MART	exon	440716	440751	.	-	.	ID=tF(GAA)G-exon1;Name=tF(GAA)G-exon1;Parent=tF(GAA)G
VII	S-MART	exon	440771	440807	.	-	.	ID=tF(GAA)G-exon2;Name=tF(GAA)G-exon2;Parent=tF(GAA)G
V	S-MART	transcript	29797	31239	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:12238:2941#0--HWUSI-EAS1656_0009_FC:3:53:10554:20535#0--HWUSI-EAS1656_000;p_id=P2188;gene_id=YEL064C;tss_id=TSS3745;nbOverlaps=149;ID=YEL064C;Name=AVT2
V	S-MART	transcript	27657	29543	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:16973:20574#0--HWUSI-EAS1656_0009_FC:3:105:11826:18032#0--HWUSI-EAS1656_0;p_id=P1206;gene_id=YEL065W;tss_id=TSS3430;nbOverlaps=476;ID=YEL065W;Name=SIT1
V	S-MART	transcript	26667	27206	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:7466:12110#0--HWUSI-EAS1656_0009_FC:3:87:9528:5980#0--HWUSI-EAS1656_0009_;p_id=P1923;gene_id=YEL066W;tss_id=TSS2265;nbOverlaps=112;ID=YEL066W;Name=HPA3
X	S-MART	transcript	388385	390853	.	-	.	seqedit=false;p_id=P3535;gene_id=YJL029C;tss_id=TSS1451;nbOverlaps=0;ID=YJL029C;Name=VPS53
V	S-MART	transcript	21537	23231	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4018:17893#0--HWUSI-EAS1656_0009_FC:3:8:19553:20223#0--HWUSI-EAS1656_0009;p_id=P3817;gene_id=YEL069C;tss_id=TSS5184;nbOverlaps=13;ID=YEL069C;Name=HXT13
V	S-MART	transcript	26189	26776	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4365:20475#0--HWUSI-EAS1656_0009_FC:3:63:5393:10402#0--HWUSI-EAS1656_000;p_id=P840;gene_id=YEL067C;tss_id=TSS3138;nbOverlaps=34;ID=YEL067C;Name=YEL067C
XVI	S-MART	transcript	363520	364068	.	-	.	seqedit=false;p_id=P288;gene_id=YPL099C;tss_id=TSS6380;nbOverlaps=0;ID=YPL099C;Name=AIM43
V	S-MART	transcript	25646	25978	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:63:12138:19700#0--HWUSI-EAS1656_0009_FC:3:21:19565:14868#0--HWUSI-EAS1656_00;p_id=P2294;gene_id=YEL068C;tss_id=TSS798;nbOverlaps=54;ID=YEL068C;Name=YEL068C
V	S-MART	transcript	19589	21097	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:10761:20527#0--HWUSI-EAS1656_0009_FC:3:36:16341:18718#0--HWUSI-EAS1656_00;p_id=P6283;gene_id=YEL070W;tss_id=TSS6670;nbOverlaps=3;ID=YEL070W;Name=DSF1
XV	S-MART	transcript	238619	240094	.	+	.	seqedit=false;p_id=P5557;gene_id=YOL049W;tss_id=TSS1421;nbOverlaps=0;ID=YOL049W;Name=GSH2
V	S-MART	transcript	16355	17845	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:11729:13683#0--HWUSI-EAS1656_0009_FC:3:102:16444:4093#0--HWUSI-EAS1656_000;p_id=P1631;gene_id=YEL071W;tss_id=TSS672;nbOverlaps=9245;ID=YEL071W;Name=DLD3
V	S-MART	transcript	13720	14415	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:38:1908:20275#0--HWUSI-EAS1656_0009_FC:3:36:4612:6612#0--HWUSI-EAS1656_0009_;p_id=P4535;gene_id=YEL072W;tss_id=TSS4193;nbOverlaps=69;ID=YEL072W;Name=RMD6
XIV	S-MART	transcript	326741	330073	.	-	.	seqedit=false;p_id=P6194;gene_id=YNL163C;tss_id=TSS5997;nbOverlaps=0;ID=YNL163C;Name=RIA1
V	S-MART	transcript	4870	5481	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:8037:10273#0--HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_000;p_id=P5751;gene_id=YEL075W-A;tss_id=TSS5105;nbOverlaps=66;ID=YEL075W-A;Name=YEL075W-A
XVI	S-MART	transcript	231217	232509	.	+	.	seqedit=false;p_id=P2836;gene_id=YPL168W;tss_id=TSS1078;nbOverlaps=0;ID=YPL168W;Name=YPL168W
V	S-MART	transcript	7230	7553	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:14153:18905#0--HWUSI-EAS1656_0009_FC:3:50:3466:10483#0--HWUSI-EAS1656_00;p_id=P2983;gene_id=YEL073C;tss_id=TSS3241;nbOverlaps=21;ID=YEL073C;Name=YEL073C
V	S-MART	transcript	6126	6464	.	+	.	seqedit=false;p_id=P4642;gene_id=YEL074W;tss_id=TSS3100;nbOverlaps=0;ID=YEL074W;Name=YEL074W
XIV	S-MART	transcript	31944	33188	.	+	.	seqedit=false;p_id=P5574;gene_id=YNL323W;tss_id=TSS1915;nbOverlaps=0;ID=YNL323W;Name=LEM3
V	S-MART	transcript	5345	5713	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:1482:14832#0--HWUSI-EAS1656_0009_FC:3:9:14706:16524#0--HWUSI-EAS1656_0009;p_id=P6123;gene_id=YEL075C;tss_id=TSS6954;nbOverlaps=35;ID=YEL075C;Name=YEL075C
XV	S-MART	transcript	234940	238185	.	+	.	seqedit=false;p_id=P2508;gene_id=YOL051W;tss_id=TSS4483;nbOverlaps=0;ID=YOL051W;Name=GAL11
V	S-MART	transcript	4185	5114	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:8037:10273#0--HWUSI-EAS1656_0009_FC:3:96:8143:11229#0--HWUSI-EAS1656_0009;p_id=P3681;gene_id=YEL076C-A;tss_id=TSS5666;nbOverlaps=58;ID=YEL076C-A;Name=YEL076C-A
V	S-MART	exon	4185	4322	.	-	.	ID=YEL076C-A-exon1;Name=YEL076C-A-exon1;Parent=YEL076C-A
V	S-MART	exon	4602	5114	.	-	.	ID=YEL076C-A-exon2;Name=YEL076C-A-exon2;Parent=YEL076C-A
V	S-MART	transcript	4464	5114	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:8037:10273#0--HWUSI-EAS1656_0009_FC:3:15:4154:20228#0--HWUSI-EAS1656_0009;p_id=P492;gene_id=YEL076C;tss_id=TSS5666;nbOverlaps=59;ID=YEL076C;Name=YEL076C
XIV	S-MART	transcript	325265	326320	.	-	.	seqedit=false;p_id=P1931;gene_id=YNL164C;tss_id=TSS4513;nbOverlaps=0;ID=YNL164C;Name=IBD2
XVI	S-MART	transcript	697131	697502	.	-	.	seqedit=false;p_id=P4194;gene_id=YPR077C;tss_id=TSS5740;nbOverlaps=0;ID=YPR077C;Name=YPR077C
XVI	S-MART	transcript	697147	698265	.	-	.	seqedit=false;p_id=P2663;gene_id=YPR078C;tss_id=TSS3883;nbOverlaps=0;ID=YPR078C;Name=YPR078C
V	S-MART	transcript	630	1112	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P1717;gene_id=YEL077W-A;tss_id=TSS2540;nbOverlaps=77;ID=YEL077W-A;Name=YEL077W-A
V	S-MART	transcript	264	4097	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:5808:5521#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_0009;p_id=P1365;gene_id=YEL077C;tss_id=TSS3750;nbOverlaps=351;ID=YEL077C;Name=YEL077C
XV	S-MART	transcript	237882	238202	.	-	.	seqedit=false;p_id=P4364;gene_id=YOL050C;tss_id=TSS3409;nbOverlaps=0;ID=YOL050C;Name=YOL050C
V	S-MART	transcript	153520	155808	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:3758:20279#0--HWUSI-EAS1656_0009_FC:3:45:17062:7512#0--HWUSI-EAS1656_0009;p_id=P1180;gene_id=YER001W;tss_id=TSS2116;nbOverlaps=652;ID=YER001W;Name=MNN1
V	S-MART	transcript	156803	157498	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:61:16674:10219#0--HWUSI-EAS1656_0009_FC:3:92:3981:5140#0--HWUSI-EAS1656_0009;p_id=P5282;gene_id=YER002W;tss_id=TSS97;nbOverlaps=84;ID=YER002W;Name=NOP16
XIV	S-MART	transcript	322219	323565	.	-	.	seqedit=false;p_id=P4645;gene_id=YNL166C;tss_id=TSS1533;nbOverlaps=0;ID=YNL166C;Name=BNI5
V	S-MART	transcript	157736	159118	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:61:5594:19037#0--HWUSI-EAS1656_0009_FC:3:57:15499:14522#0--HWUSI-EAS1656_000;p_id=P4496;gene_id=YER003C;tss_id=TSS4322;nbOverlaps=1001;ID=YER003C;Name=PMI40
V	S-MART	exon	157736	158994	.	-	.	ID=YER003C-exon1;Name=PMI40-exon1;Parent=YER003C
V	S-MART	exon	159088	159118	.	-	.	ID=YER003C-exon2;Name=PMI40-exon2;Parent=YER003C
XVI	S-MART	transcript	706972	708342	.	+	.	seqedit=false;p_id=P3090;gene_id=YPR084W;tss_id=TSS1049;nbOverlaps=0;ID=YPR084W;Name=YPR084W
XVI	S-MART	transcript	710101	711138	.	+	.	seqedit=false;p_id=P3916;gene_id=YPR086W;tss_id=TSS6161;nbOverlaps=0;ID=YPR086W;Name=SUA7
V	S-MART	transcript	159580	160275	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:6086:21253#0--HWUSI-EAS1656_0009_FC:3:37:5535:6128#0--HWUSI-EAS1656_0009;p_id=P754;gene_id=YER004W;tss_id=TSS2675;nbOverlaps=265;ID=YER004W;Name=FMP52
XV	S-MART	transcript	232446	233636	.	-	.	seqedit=false;p_id=P5083;gene_id=YOL052C;tss_id=TSS3901;nbOverlaps=0;ID=YOL052C;Name=SPE2
V	S-MART	transcript	160550	162442	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:93:5016:15168#0--HWUSI-EAS1656_0009_FC:3:53:7009:13463#0--HWUSI-EAS1656_0009;p_id=P2593;gene_id=YER005W;tss_id=TSS6067;nbOverlaps=313;ID=YER005W;Name=YND1
V	S-MART	transcript	164344	164661	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:81:16055:14176#0--HWUSI-EAS1656_0009_FC:3:24:9271:13020#0--HWUSI-EAS1656_000;p_id=P1848;gene_id=YER006C-A;tss_id=TSS3042;nbOverlaps=42;ID=YER006C-A;Name=YER006C-A
XIV	S-MART	transcript	323832	325052	.	+	.	seqedit=false;p_id=P5179;gene_id=YNL165W;tss_id=TSS3239;nbOverlaps=0;ID=YNL165W;Name=YNL165W
V	S-MART	transcript	162723	164285	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:36:12620:6579#0--HWUSI-EAS1656_0009_FC:3:22:8606:6625#0--HWUSI-EAS1656_0009_;p_id=P674;gene_id=YER006W;tss_id=TSS4772;nbOverlaps=397;ID=YER006W;Name=NUG1
V	S-MART	transcript	166237	166885	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:8856:6528#0--HWUSI-EAS1656_0009_FC:3:43:1982:13937#0--HWUSI-EAS1656_0009_;p_id=P2826;gene_id=YER007C-A;tss_id=TSS840;nbOverlaps=408;ID=YER007C-A;Name=TMA20
V	S-MART	exon	166237	166771	.	-	.	ID=YER007C-A-exon1;Name=TMA20-exon1;Parent=YER007C-A
V	S-MART	exon	166875	166885	.	-	.	ID=YER007C-A-exon2;Name=TMA20-exon2;Parent=YER007C-A
XVI	S-MART	transcript	718379	718684	.	+	.	seqedit=false;p_id=P4427;gene_id=YPR092W;tss_id=TSS1749;nbOverlaps=0;ID=YPR092W;Name=YPR092W
XVI	S-MART	transcript	720637	720960	.	+	.	seqedit=false;p_id=P4183;gene_id=YPR094W;tss_id=TSS4201;nbOverlaps=0;ID=YPR094W;Name=RDS3
XV	S-MART	transcript	231570	231755	.	-	.	seqedit=false;p_id=P1302;gene_id=YOL052C-A;tss_id=TSS4601;nbOverlaps=0;ID=YOL052C-A;Name=DDR2
V	S-MART	transcript	164527	166083	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:12223:18068#0--HWUSI-EAS1656_0009_FC:3:45:17168:16582#0--HWUSI-EAS1656_00;p_id=P1233;gene_id=YER007W;tss_id=TSS6337;nbOverlaps=79;ID=YER007W;Name=PAC2
V	S-MART	transcript	167808	171818	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:16192:3003#0--HWUSI-EAS1656_0009_FC:3:92:15600:14904#0--HWUSI-EAS1656_000;p_id=P5100;gene_id=YER008C;tss_id=TSS1913;nbOverlaps=239;ID=YER008C;Name=SEC3
XII	S-MART	transcript	600019	602463	.	-	.	seqedit=false;p_id=P5104;gene_id=YLR228C;tss_id=TSS2555;nbOverlaps=0;ID=YLR228C;Name=ECM22
V	S-MART	transcript	172115	172492	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:4451:13983#0--HWUSI-EAS1656_0009_FC:3:83:2562:8990#0--HWUSI-EAS1656_0009_;p_id=P4202;gene_id=YER009W;tss_id=TSS3196;nbOverlaps=1600;ID=YER009W;Name=NTF2
V	S-MART	transcript	175248	176012	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:45:9061:7996#0--HWUSI-EAS1656_0009_FC:3:54:7352:5025#0--HWUSI-EAS1656_0009_F;p_id=P2792;gene_id=YER011W;tss_id=TSS724;nbOverlaps=31;ID=YER011W;Name=TIR1
XII	S-MART	transcript	720771	721430	.	-	.	seqedit=false;p_id=P5317;gene_id=YLR293C;tss_id=TSS1844;nbOverlaps=0;ID=YLR293C;Name=GSP1
V	S-MART	transcript	172634	173338	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:3745:15637#0--HWUSI-EAS1656_0009_FC:3:55:12447:14253#0--HWUSI-EAS1656_000;p_id=P3412;gene_id=YER010C;tss_id=TSS3137;nbOverlaps=279;ID=YER010C;Name=YER010C
V	S-MART	transcript	177835	178431	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:12498:7634#0--HWUSI-EAS1656_0009_FC:3:106:14139:20425#0--HWUSI-EAS1656_0;p_id=P1559;gene_id=YER012W;tss_id=TSS3874;nbOverlaps=259;ID=YER012W;Name=PRE1
XV	S-MART	transcript	230085	231272	.	+	.	seqedit=false;p_id=P5595;gene_id=YOL053W;tss_id=TSS4453;nbOverlaps=0;ID=YOL053W;Name=AIM39
V	S-MART	transcript	178841	182278	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:38:16009:19076#0--HWUSI-EAS1656_0009_FC:3:51:18563:4972#0--HWUSI-EAS1656_000;p_id=P1494;gene_id=YER013W;tss_id=TSS6396;nbOverlaps=253;ID=YER013W;Name=PRP22
V	S-MART	transcript	183731	184700	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:65:2474:19803#0--HWUSI-EAS1656_0009_FC:3:44:12693:13351#0--HWUSI-EAS1656_000;p_id=P5060;gene_id=YER014C-A;tss_id=TSS4730;nbOverlaps=25;ID=YER014C-A;Name=BUD25
V	S-MART	exon	183731	184169	.	-	.	ID=YER014C-A-exon1;Name=BUD25-exon1;Parent=YER014C-A
V	S-MART	exon	184678	184700	.	-	.	ID=YER014C-A-exon2;Name=BUD25-exon2;Parent=YER014C-A
XII	S-MART	transcript	604212	604787	.	-	.	seqedit=false;p_id=P661;gene_id=YLR229C;tss_id=TSS4802;nbOverlaps=0;ID=YLR229C;Name=CDC42
XVI	S-MART	transcript	730492	731019	.	+	.	seqedit=false;p_id=P5813;gene_id=YPR101W;tss_id=TSS5142;nbOverlaps=0;ID=YPR101W;Name=SNT309
XVI	S-MART	transcript	228314	228772	.	+	.	seqedit=false;p_id=P2500;gene_id=YPL170W;tss_id=TSS4975;nbOverlaps=0;ID=YPL170W;Name=DAP1
XVI	S-MART	transcript	731224	731748	.	-	.	seqedit=false;p_id=P6596;gene_id=YPR102C;tss_id=TSS4239;nbOverlaps=0;ID=YPR102C;Name=RPL11A
V	S-MART	transcript	182600	184219	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17295:20217#0--HWUSI-EAS1656_0009_FC:3:61:5037:3864#0--HWUSI-EAS1656_0009;p_id=P4778;gene_id=YER014W;tss_id=TSS2217;nbOverlaps=55;ID=YER014W;Name=HEM14
XIV	S-MART	transcript	28739	31378	.	-	.	seqedit=false;p_id=P5741;gene_id=YNL325C;tss_id=TSS820;nbOverlaps=0;ID=YNL325C;Name=FIG4
V	S-MART	transcript	184541	186775	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:3918:5431#0--HWUSI-EAS1656_0009_FC:3:83:10869:14798#0--HWUSI-EAS1656_0009;p_id=P2123;gene_id=YER015W;tss_id=TSS4992;nbOverlaps=95;ID=YER015W;Name=FAA2
XV	S-MART	transcript	228614	229834	.	+	.	seqedit=false;p_id=P2126;gene_id=YOL054W;tss_id=TSS2787;nbOverlaps=0;ID=YOL054W;Name=PSH1
V	S-MART	transcript	188277	189311	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:11292:14360#0--HWUSI-EAS1656_0009_FC:3:116:17176:9381#0--HWUSI-EAS1656_0;p_id=P4196;gene_id=YER016W;tss_id=TSS6479;nbOverlaps=179;ID=YER016W;Name=BIM1
V	S-MART	transcript	189503	191788	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:7824:2551#0--HWUSI-EAS1656_0009_FC:3:79:9111:7700#0--HWUSI-EAS1656_0009_F;p_id=P6298;gene_id=YER017C;tss_id=TSS1450;nbOverlaps=241;ID=YER017C;Name=AFG3
XII	S-MART	transcript	605758	607119	.	-	.	seqedit=false;p_id=P5989;gene_id=YLR231C;tss_id=TSS5918;nbOverlaps=0;ID=YLR231C;Name=BNA5
VIII	S-MART	transcript	225442	225777	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:4092:16228#0--HWUSI-EAS1656_0009_FC:3:115:5872:4345#0--HWUSI-EAS1656_0009;p_id=P741;gene_id=YHR063W-A;tss_id=TSS4707;nbOverlaps=1527;ID=YHR063W-A;Name=YHR063W-A
VIII	S-MART	transcript	225525	227141	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:36:6045:2243#0--HWUSI-EAS1656_0009_FC:3:50:11408:18414#0--HWUSI-EAS1656_0009;p_id=P378;gene_id=YHR064C;tss_id=TSS661;nbOverlaps=6896;ID=YHR064C;Name=SSZ1
VIII	S-MART	transcript	227532	229037	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:61:14516:5178#0--HWUSI-EAS1656_0009_FC:3:108:9339:15959#0--HWUSI-EAS1656_000;p_id=P5953;gene_id=YHR065C;tss_id=TSS980;nbOverlaps=450;ID=YHR065C;Name=RRP3
XV	S-MART	transcript	224420	226075	.	-	.	seqedit=false;p_id=P6687;gene_id=YOL055C;tss_id=TSS3674;nbOverlaps=0;ID=YOL055C;Name=THI20
VIII	S-MART	transcript	229335	230696	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:78:12017:4479#0--HWUSI-EAS1656_0009_FC:3:6:10268:14883#0--HWUSI-EAS1656_0009;p_id=P2759;gene_id=YHR066W;tss_id=TSS4828;nbOverlaps=317;ID=YHR066W;Name=SSF1
VIII	S-MART	transcript	230970	231812	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:9344:15566#0--HWUSI-EAS1656_0009_FC:3:15:15023:8971#0--HWUSI-EAS1656_0009;p_id=P3539;gene_id=YHR067W;tss_id=TSS7025;nbOverlaps=155;ID=YHR067W;Name=HTD2
XIV	S-MART	transcript	310636	315882	.	+	.	seqedit=false;p_id=P4572;gene_id=YNL172W;tss_id=TSS1205;nbOverlaps=0;ID=YNL172W;Name=APC1
VIII	S-MART	transcript	232133	233296	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:10190:9826#0--HWUSI-EAS1656_0009_FC:3:29:9116:3904#0--HWUSI-EAS1656_0009_F;p_id=P1282;gene_id=YHR068W;tss_id=TSS1365;nbOverlaps=1271;ID=YHR068W;Name=DYS1
VIII	S-MART	transcript	233579	234658	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:6375:16578#0--HWUSI-EAS1656_0009_FC:3:42:2875:7629#0--HWUSI-EAS1656_0009_;p_id=P4811;gene_id=YHR069C;tss_id=TSS5893;nbOverlaps=163;ID=YHR069C;Name=RRP4
IV	S-MART	transcript	1332983	1333969	.	-	.	seqedit=false;p_id=P2633;gene_id=YDR435C;tss_id=TSS6172;nbOverlaps=0;ID=YDR435C;Name=PPM1
VIII	S-MART	transcript	234874	235236	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:3798:16472#0--HWUSI-EAS1656_0009_FC:3:13:8171:10660#0--HWUSI-EAS1656_0009;p_id=P628;gene_id=YHR069C-A;tss_id=TSS1136;nbOverlaps=30;ID=YHR069C-A;Name=YHR069C-A
VIII	S-MART	transcript	236102	236512	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:15530:18912#0--HWUSI-EAS1656_0009_FC:3:83:5732:10225#0--HWUSI-EAS1656_000;p_id=P895;gene_id=YHR070C-A;tss_id=TSS4326;nbOverlaps=47;ID=YHR070C-A;Name=YHR070C-A
XV	S-MART	transcript	223268	224179	.	+	.	seqedit=false;p_id=P2785;gene_id=YOL056W;tss_id=TSS464;nbOverlaps=0;ID=YOL056W;Name=GPM3
VIII	S-MART	transcript	234881	236380	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:15802:1771#0--HWUSI-EAS1656_0009_FC:3:100:16474:17484#0--HWUSI-EAS1656_00;p_id=P2796;gene_id=YHR070W;tss_id=TSS3811;nbOverlaps=157;ID=YHR070W;Name=TRM5
VIII	S-MART	transcript	238910	239230	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:6101:15105#0--HWUSI-EAS1656_0009_FC:3:51:9648:6015#0--HWUSI-EAS1656_0009_;p_id=P5414;gene_id=YHR071C-A;tss_id=TSS1137;nbOverlaps=89;ID=YHR071C-A;Name=YHR071C-A
XII	S-MART	transcript	607425	609524	.	-	.	seqedit=false;p_id=P633;gene_id=YLR233C;tss_id=TSS515;nbOverlaps=0;ID=YLR233C;Name=EST1
VIII	S-MART	transcript	237004	237693	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:13563:4009#0--HWUSI-EAS1656_0009_FC:3:19:19553:1436#0--HWUSI-EAS1656_0009;p_id=P6017;gene_id=YHR071W;tss_id=TSS1540;nbOverlaps=208;ID=YHR071W;Name=PCL5
VIII	S-MART	transcript	239098	241293	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:5260:10792#0--HWUSI-EAS1656_0009_FC:3:36:16700:15154#0--HWUSI-EAS1656_00;p_id=P4429;gene_id=YHR072W;tss_id=TSS5620;nbOverlaps=1012;ID=YHR072W;Name=ERG7
XVI	S-MART	transcript	657529	658938	.	+	.	seqedit=false;p_id=P3633;gene_id=YPR047W;tss_id=TSS3219;nbOverlaps=0;ID=YPR047W;Name=MSF1
IV	S-MART	transcript	1334821	1336953	.	+	.	seqedit=false;p_id=P4784;gene_id=YDR436W;tss_id=TSS4400;nbOverlaps=0;ID=YDR436W;Name=PPZ2
VIII	S-MART	transcript	241664	241840	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:14607:19236#0--HWUSI-EAS1656_0009_FC:3:24:5430:17940#0--HWUSI-EAS1656_00;p_id=P5358;gene_id=YHR072W-A;tss_id=TSS6241;nbOverlaps=1149;ID=YHR072W-A;Name=NOP10
VIII	S-MART	transcript	245422	245502	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:18202:3697#0--HWUSI-EAS1656_0009_FC:3:101:13215:6130#0--HWUSI-EAS1656_000;p_id=P956;gene_id=YHR073C-B;tss_id=TSS4582;nbOverlaps=41;ID=YHR073C-B;Name=YHR073C-B
XV	S-MART	transcript	219211	220473	.	+	.	seqedit=false;p_id=P2770;gene_id=YOL058W;tss_id=TSS6992;nbOverlaps=0;ID=YOL058W;Name=ARG1
VIII	S-MART	transcript	242582	245572	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:6274:10564#0--HWUSI-EAS1656_0009_FC:3:95:9890:7163#0--HWUSI-EAS1656_0009_F;p_id=P498;gene_id=YHR073W;tss_id=TSS5503;nbOverlaps=595;ID=YHR073W;Name=OSH3
VIII	S-MART	transcript	242868	243044	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:9:8513:17267#0--HWUSI-EAS1656_0009_FC:3:18:18777:3112#0--HWUSI-EAS1656_0009_;p_id=P5683;gene_id=YHR073W-A;tss_id=TSS4542;nbOverlaps=63;ID=YHR073W-A;Name=YHR073W-A
XIV	S-MART	transcript	315629	315997	.	-	.	seqedit=false;p_id=P2437;gene_id=YNL171C;tss_id=TSS5587;nbOverlaps=0;ID=YNL171C;Name=YNL171C
VIII	S-MART	transcript	246193	248337	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:7034:7794#0--HWUSI-EAS1656_0009_FC:3:54:18043:18415#0--HWUSI-EAS1656_0009;p_id=P2921;gene_id=YHR074W;tss_id=TSS6470;nbOverlaps=624;ID=YHR074W;Name=QNS1
VIII	S-MART	transcript	248439	249641	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:17871:6321#0--HWUSI-EAS1656_0009_FC:3:69:8507:5780#0--HWUSI-EAS1656_0009;p_id=P4505;gene_id=YHR075C;tss_id=TSS5216;nbOverlaps=76;ID=YHR075C;Name=PPE1
IV	S-MART	transcript	1337352	1337774	.	+	.	seqedit=false;p_id=P4730;gene_id=YDR437W;tss_id=TSS983;nbOverlaps=0;ID=YDR437W;Name=GPI19
XII	S-MART	transcript	721999	722373	.	-	.	seqedit=false;p_id=P6119;gene_id=YLR295C;tss_id=TSS7067;nbOverlaps=0;ID=YLR295C;Name=ATP14
VIII	S-MART	transcript	251101	252225	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:2321:6443#0--HWUSI-EAS1656_0009_FC:3:34:12796:16325#0--HWUSI-EAS1656_0009;p_id=P2467;gene_id=YHR076W;tss_id=TSS6385;nbOverlaps=264;ID=YHR076W;Name=PTC7
VIII	S-MART	exon	251101	251155	.	+	.	ID=YHR076W-exon1;Name=PTC7-exon1;Parent=YHR076W
VIII	S-MART	exon	251249	252225	.	+	.	ID=YHR076W-exon2;Name=PTC7-exon2;Parent=YHR076W
XV	S-MART	transcript	220767	222902	.	+	.	seqedit=false;p_id=P2530;gene_id=YOL057W;tss_id=TSS4643;nbOverlaps=0;ID=YOL057W;Name=YOL057W
VIII	S-MART	transcript	252374	255756	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:8260:17395#0--HWUSI-EAS1656_0009_FC:3:27:7491:2526#0--HWUSI-EAS1656_0009_;p_id=P29;gene_id=YHR077C;tss_id=TSS5381;nbOverlaps=178;ID=YHR077C;Name=NMD2
VIII	S-MART	exon	252374	255637	.	-	.	ID=YHR077C-exon1;Name=NMD2-exon1;Parent=YHR077C
VIII	S-MART	exon	255751	255756	.	-	.	ID=YHR077C-exon2;Name=NMD2-exon2;Parent=YHR077C
XII	S-MART	transcript	609783	611753	.	+	.	seqedit=false;p_id=P2477;gene_id=YLR234W;tss_id=TSS6358;nbOverlaps=0;ID=YLR234W;Name=TOP3
XVI	S-MART	transcript	226169	227371	.	-	.	seqedit=false;p_id=P3942;gene_id=YPL171C;tss_id=TSS4848;nbOverlaps=0;ID=YPL171C;Name=OYE3
IV	S-MART	transcript	1338274	1339386	.	+	.	seqedit=false;p_id=P6143;gene_id=YDR438W;tss_id=TSS57;nbOverlaps=0;ID=YDR438W;Name=THI74
VIII	S-MART	transcript	258244	261591	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:4177:10819#0--HWUSI-EAS1656_0009_FC:3:60:13569:2407#0--HWUSI-EAS1656_0009;p_id=P5145;gene_id=YHR079C;tss_id=TSS4032;nbOverlaps=236;ID=YHR079C;Name=IRE1
XIV	S-MART	transcript	31050	31445	.	+	.	seqedit=false;p_id=P6249;gene_id=YNL324W;tss_id=TSS2967;nbOverlaps=0;ID=YNL324W;Name=YNL324W
VIII	S-MART	transcript	256360	258018	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:1324:9149#0--HWUSI-EAS1656_0009_FC:3:110:3569:9355#0--HWUSI-EAS1656_0009;p_id=P5210;gene_id=YHR078W;tss_id=TSS4819;nbOverlaps=264;ID=YHR078W;Name=YHR078W
XV	S-MART	transcript	217126	218448	.	+	.	seqedit=false;p_id=P968;gene_id=YOL059W;tss_id=TSS2946;nbOverlaps=0;ID=YOL059W;Name=GPD2
VIII	S-MART	transcript	262192	262553	.	-	.	seqedit=false;p_id=P4952;gene_id=YHR079C-A;tss_id=TSS3306;nbOverlaps=0;ID=YHR079C-A;Name=SAE3
VIII	S-MART	exon	262192	262354	.	-	.	ID=YHR079C-A-exon1;Name=SAE3-exon1;Parent=YHR079C-A
VIII	S-MART	exon	262441	262553	.	-	.	ID=YHR079C-A-exon2;Name=SAE3-exon2;Parent=YHR079C-A
X	S-MART	transcript	376662	377336	.	+	.	seqedit=false;p_id=P4096;gene_id=YJL037W;tss_id=TSS1269;nbOverlaps=0;ID=YJL037W;Name=IRC18
VIII	S-MART	transcript	267538	268092	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:110:3665:20176#0--HWUSI-EAS1656_0009_FC:3:109:15575:17488#0--HWUSI-EAS1656_0;p_id=P2069;gene_id=YHR081W;tss_id=TSS692;nbOverlaps=113;ID=YHR081W;Name=LRP1
IV	S-MART	transcript	1339676	1340719	.	+	.	seqedit=false;p_id=P5495;gene_id=YDR439W;tss_id=TSS3607;nbOverlaps=0;ID=YDR439W;Name=LRS4
VIII	S-MART	transcript	262801	266838	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:13495:16452#0--HWUSI-EAS1656_0009_FC:3:119:15271:14413#0--HWUSI-EAS1656_0;p_id=P110;gene_id=YHR080C;tss_id=TSS5777;nbOverlaps=244;ID=YHR080C;Name=YHR080C
VIII	S-MART	transcript	268459	271548	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:6000:18648#0--HWUSI-EAS1656_0009_FC:3:111:16508:3273#0--HWUSI-EAS1656_000;p_id=P5470;gene_id=YHR082C;tss_id=TSS2360;nbOverlaps=407;ID=YHR082C;Name=KSP1
XV	S-MART	transcript	214017	216137	.	-	.	seqedit=false;p_id=P4217;gene_id=YOL060C;tss_id=TSS5472;nbOverlaps=0;ID=YOL060C;Name=MAM3
VIII	S-MART	transcript	272627	273616	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:15089:16478#0--HWUSI-EAS1656_0009_FC:3:9:13607:9354#0--HWUSI-EAS1656_000;p_id=P2566;gene_id=YHR083W;tss_id=TSS2395;nbOverlaps=542;ID=YHR083W;Name=SAM35
VIII	S-MART	transcript	274174	276240	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:6278:13617#0--HWUSI-EAS1656_0009_FC:3:101:13966:6454#0--HWUSI-EAS1656_000;p_id=P3691;gene_id=YHR084W;tss_id=TSS3092;nbOverlaps=96;ID=YHR084W;Name=STE12
XII	S-MART	transcript	611532	611930	.	-	.	seqedit=false;p_id=P5336;gene_id=YLR235C;tss_id=TSS6490;nbOverlaps=0;ID=YLR235C;Name=YLR235C
VIII	S-MART	transcript	276764	277768	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:4962:2067#0--HWUSI-EAS1656_0009_FC:3:59:1274:8322#0--HWUSI-EAS1656_0009_F;p_id=P1060;gene_id=YHR085W;tss_id=TSS801;nbOverlaps=173;ID=YHR085W;Name=IPI1
VIII	S-MART	transcript	278153	279724	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:2587:6852#0--HWUSI-EAS1656_0009_FC:3:50:13268:4520#0--HWUSI-EAS1656_0009_;p_id=P2869;gene_id=YHR086W;tss_id=TSS5603;nbOverlaps=205;ID=YHR086W;Name=NAM8
II	S-MART	transcript	723736	724263	.	-	.	seqedit=false;p_id=P5791;gene_id=YBR254C;tss_id=TSS2894;nbOverlaps=0;ID=YBR254C;Name=TRS20
VIII	S-MART	transcript	280231	280392	.	+	.	seqedit=false;p_id=P6343;gene_id=YHR086W-A;tss_id=TSS3708;nbOverlaps=0;ID=YHR086W-A;Name=YHR086W-A
VIII	S-MART	transcript	280820	281155	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:86:5870:10503#0--HWUSI-EAS1656_0009_FC:3:16:4854:7331#0--HWUSI-EAS1656_0009_;p_id=P4043;gene_id=YHR087W;tss_id=TSS6347;nbOverlaps=9;ID=YHR087W;Name=RTC3
XV	S-MART	transcript	212244	213734	.	+	.	seqedit=false;p_id=P488;gene_id=YOL061W;tss_id=TSS3704;nbOverlaps=0;ID=YOL061W;Name=PRS5
VIII	S-MART	transcript	281495	282382	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:53:18275:11131#0--HWUSI-EAS1656_0009_FC:3:109:7015:5446#0--HWUSI-EAS1656_000;p_id=P2332;gene_id=YHR088W;tss_id=TSS2713;nbOverlaps=85;ID=YHR088W;Name=RPF1
VIII	S-MART	transcript	282681	283298	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:8403:16702#0--HWUSI-EAS1656_0009_FC:3:101:10241:15634#0--HWUSI-EAS1656_00;p_id=P2864;gene_id=YHR089C;tss_id=TSS4958;nbOverlaps=1450;ID=YHR089C;Name=GAR1
X	S-MART	transcript	368748	373799	.	-	.	seqedit=false;p_id=P3569;gene_id=YJL039C;tss_id=TSS3577;nbOverlaps=0;ID=YJL039C;Name=NUP192
VIII	S-MART	transcript	283777	284625	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:17602:7517#0--HWUSI-EAS1656_0009_FC:3:103:15177:4049#0--HWUSI-EAS1656_000;p_id=P251;gene_id=YHR090C;tss_id=TSS891;nbOverlaps=36;ID=YHR090C;Name=YNG2
VIII	S-MART	transcript	284839	286770	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:7357:2248#0--HWUSI-EAS1656_0009_FC:3:14:10941:4523#0--HWUSI-EAS1656_0009_F;p_id=P1686;gene_id=YHR091C;tss_id=TSS516;nbOverlaps=138;ID=YHR091C;Name=MSR1
II	S-MART	transcript	726618	727074	.	-	.	seqedit=false;p_id=P5908;gene_id=YBR255C-A;tss_id=TSS772;nbOverlaps=0;ID=YBR255C-A;Name=YBR255C-A
II	S-MART	exon	726618	726917	.	-	.	ID=YBR255C-A-exon1;Name=YBR255C-A-exon1;Parent=YBR255C-A
II	S-MART	exon	727012	727074	.	-	.	ID=YBR255C-A-exon2;Name=YBR255C-A-exon2;Parent=YBR255C-A
VIII	S-MART	transcript	287081	288811	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:71:16554:18972#0--HWUSI-EAS1656_0009_FC:3:36:10728:11999#0--HWUSI-EAS1656_00;p_id=P2851;gene_id=YHR092C;tss_id=TSS961;nbOverlaps=166;ID=YHR092C;Name=HXT4
VIII	S-MART	transcript	289142	289690	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:15124:15082#0--HWUSI-EAS1656_0009_FC:3:5:4016:17964#0--HWUSI-EAS1656_0009;p_id=P2275;gene_id=YHR093W;tss_id=TSS1778;nbOverlaps=4;ID=YHR093W;Name=AHT1
XV	S-MART	transcript	210520	211995	.	-	.	seqedit=false;p_id=P145;gene_id=YOL062C;tss_id=TSS4302;nbOverlaps=0;ID=YOL062C;Name=APM4
VIII	S-MART	transcript	290913	292625	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:46:17132:20699#0--HWUSI-EAS1656_0009_FC:3:66:5475:16400#0--HWUSI-EAS1656_000;p_id=P2946;gene_id=YHR094C;tss_id=TSS4635;nbOverlaps=2305;ID=YHR094C;Name=HXT1
VIII	S-MART	transcript	294669	296447	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:2788:1244#0--HWUSI-EAS1656_0009_FC:3:50:8693:14138#0--HWUSI-EAS1656_0009;p_id=P6497;gene_id=YHR096C;tss_id=TSS5727;nbOverlaps=115;ID=YHR096C;Name=HXT5
XIV	S-MART	transcript	303686	304615	.	-	.	seqedit=false;p_id=P1425;gene_id=YNL177C;tss_id=TSS2672;nbOverlaps=0;ID=YNL177C;Name=MRPL22
VIII	S-MART	transcript	292943	293437	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:9989:9562#0--HWUSI-EAS1656_0009_FC:3:72:7609:13315#0--HWUSI-EAS1656_0009_;p_id=P1659;gene_id=YHR095W;tss_id=TSS4167;nbOverlaps=3;ID=YHR095W;Name=YHR095W
VIII	S-MART	transcript	299145	301934	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:80:5656:14147#0--HWUSI-EAS1656_0009_FC:3:55:12337:9303#0--HWUSI-EAS1656_0009;p_id=P5490;gene_id=YHR098C;tss_id=TSS5360;nbOverlaps=1170;ID=YHR098C;Name=SFB3
VIII	S-MART	transcript	297385	298609	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:18493:12155#0--HWUSI-EAS1656_0009_FC:3:41:18043:5342#0--HWUSI-EAS1656_00;p_id=P540;gene_id=YHR097C;tss_id=TSS2497;nbOverlaps=16;ID=YHR097C;Name=YHR097C
VIII	S-MART	exon	297385	298360	.	-	.	ID=YHR097C-exon1;Name=YHR097C-exon1;Parent=YHR097C
VIII	S-MART	exon	298485	298609	.	-	.	ID=YHR097C-exon2;Name=YHR097C-exon2;Parent=YHR097C
XV	S-MART	transcript	207392	210265	.	-	.	seqedit=false;p_id=P1357;gene_id=YOL063C;tss_id=TSS6126;nbOverlaps=0;ID=YOL063C;Name=CRT10
VIII	S-MART	transcript	302761	313995	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:9919:10899#0--HWUSI-EAS1656_0009_FC:3:6:4910:18187#0--HWUSI-EAS1656_0009_;p_id=P3538;gene_id=YHR099W;tss_id=TSS3511;nbOverlaps=2058;ID=YHR099W;Name=TRA1
XII	S-MART	transcript	616332	617318	.	-	.	seqedit=false;p_id=P2637;gene_id=YLR239C;tss_id=TSS2425;nbOverlaps=0;ID=YLR239C;Name=LIP2
VIII	S-MART	transcript	314116	314673	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:1397:13638#0--HWUSI-EAS1656_0009_FC:3:23:19434:7581#0--HWUSI-EAS1656_0009;p_id=P2353;gene_id=YHR100C;tss_id=TSS3764;nbOverlaps=65;ID=YHR100C;Name=GEP4
VIII	S-MART	transcript	314874	315968	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:13656:12014#0--HWUSI-EAS1656_0009_FC:3:113:14639:3418#0--HWUSI-EAS1656_0;p_id=P3125;gene_id=YHR101C;tss_id=TSS5994;nbOverlaps=71;ID=YHR101C;Name=BIG1
VIII	S-MART	exon	314874	315771	.	-	.	ID=YHR101C-exon1;Name=BIG1-exon1;Parent=YHR101C
VIII	S-MART	exon	315859	315968	.	-	.	ID=YHR101C-exon2;Name=BIG1-exon2;Parent=YHR101C
XIV	S-MART	transcript	27337	28347	.	-	.	seqedit=false;p_id=P3654;gene_id=YNL326C;tss_id=TSS6921;nbOverlaps=0;ID=YNL326C;Name=PFA3
XV	S-MART	transcript	206103	207176	.	-	.	seqedit=false;p_id=P6628;gene_id=YOL064C;tss_id=TSS2798;nbOverlaps=0;ID=YOL064C;Name=MET22
VIII	S-MART	transcript	316572	319814	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:2123:14109#0--HWUSI-EAS1656_0009_FC:3:105:16673:6670#0--HWUSI-EAS1656_00;p_id=P1755;gene_id=YHR102W;tss_id=TSS2273;nbOverlaps=156;ID=YHR102W;Name=KIC1
VIII	S-MART	transcript	320414	322972	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:13725:4624#0--HWUSI-EAS1656_0009_FC:3:39:2250:13630#0--HWUSI-EAS1656_0009;p_id=P1997;gene_id=YHR103W;tss_id=TSS7068;nbOverlaps=472;ID=YHR103W;Name=SBE22
XII	S-MART	transcript	617533	620160	.	+	.	seqedit=false;p_id=P1364;gene_id=YLR240W;tss_id=TSS1775;nbOverlaps=0;ID=YLR240W;Name=VPS34
VIII	S-MART	transcript	323409	324392	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:14048:11310#0--HWUSI-EAS1656_0009_FC:3:119:6692:17476#0--HWUSI-EAS1656_00;p_id=P2985;gene_id=YHR104W;tss_id=TSS5498;nbOverlaps=296;ID=YHR104W;Name=GRE3
VIII	S-MART	transcript	324766	325410	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:2326:6290#0--HWUSI-EAS1656_0009_FC:3:2:12204:10677#0--HWUSI-EAS1656_0009_;p_id=P1644;gene_id=YHR105W;tss_id=TSS1607;nbOverlaps=5;ID=YHR105W;Name=YPT35
IV	S-MART	transcript	1353725	1354633	.	+	.	seqedit=false;p_id=P4382;gene_id=YDR446W;tss_id=TSS3630;nbOverlaps=0;ID=YDR446W;Name=ECM11
VIII	S-MART	transcript	325598	326626	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:6895:4186#0--HWUSI-EAS1656_0009_FC:3:39:1897:15185#0--HWUSI-EAS1656_0009_;p_id=P2082;gene_id=YHR106W;tss_id=TSS5069;nbOverlaps=53;ID=YHR106W;Name=TRR2
VIII	S-MART	transcript	326813	328036	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:1984:3971#0--HWUSI-EAS1656_0009_FC:3:97:13185:16109#0--HWUSI-EAS1656_0009;p_id=P4025;gene_id=YHR107C;tss_id=TSS2935;nbOverlaps=182;ID=YHR107C;Name=CDC12
XV	S-MART	transcript	204731	205885	.	-	.	seqedit=false;p_id=P1595;gene_id=YOL065C;tss_id=TSS6662;nbOverlaps=0;ID=YOL065C;Name=INP54
XII	S-MART	transcript	622918	623883	.	-	.	seqedit=false;p_id=P3129;gene_id=YLR242C;tss_id=TSS5450;nbOverlaps=0;ID=YLR242C;Name=ARV1
II	S-MART	transcript	727386	728102	.	-	.	seqedit=false;p_id=P3989;gene_id=YBR256C;tss_id=TSS1061;nbOverlaps=0;ID=YBR256C;Name=RIB5
XV	S-MART	transcript	202696	204471	.	-	.	seqedit=false;p_id=P1161;gene_id=YOL066C;tss_id=TSS6473;nbOverlaps=0;ID=YOL066C;Name=RIB2
XII	S-MART	transcript	620473	622821	.	+	.	seqedit=false;p_id=P232;gene_id=YLR241W;tss_id=TSS4226;nbOverlaps=0;ID=YLR241W;Name=YLR241W
IV	S-MART	transcript	1352182	1352589	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;p_id=P6340;gene_id=YDR445C;tss_id=TSS1210;nbOverlaps=105;ID=YDR445C;Name=YDR445C
XV	S-MART	transcript	201985	202518	.	-	.	seqedit=false;p_id=P2658;gene_id=YOL067C;tss_id=TSS5178;nbOverlaps=0;ID=YOL067C;Name=RTG1
XII	S-MART	transcript	625168	626331	.	-	.	seqedit=false;p_id=P703;gene_id=YLR244C;tss_id=TSS4938;nbOverlaps=0;ID=YLR244C;Name=MAP1
IV	S-MART	transcript	1354829	1355553	.	-	.	seqedit=false;p_id=P5235;gene_id=YDR447C;tss_id=TSS4659;nbOverlaps=0;ID=YDR447C;Name=RPS17B
IV	S-MART	exon	1354829	1355236	.	-	.	ID=YDR447C-exon1;Name=RPS17B-exon1;Parent=YDR447C
IV	S-MART	exon	1355551	1355553	.	-	.	ID=YDR447C-exon2;Name=RPS17B-exon2;Parent=YDR447C
XII	S-MART	transcript	724721	725416	.	-	.	seqedit=false;p_id=P6580;gene_id=YLR298C;tss_id=TSS216;nbOverlaps=0;ID=YLR298C;Name=YHC1
XV	S-MART	transcript	200368	201879	.	-	.	seqedit=false;p_id=P4651;gene_id=YOL068C;tss_id=TSS5871;nbOverlaps=0;ID=YOL068C;Name=HST1
XII	S-MART	transcript	624203	625021	.	+	.	seqedit=false;p_id=P5701;gene_id=YLR243W;tss_id=TSS2507;nbOverlaps=0;ID=YLR243W;Name=YLR243W
XV	S-MART	transcript	198942	200297	.	+	.	seqedit=false;p_id=P5342;gene_id=YOL069W;tss_id=TSS1720;nbOverlaps=0;ID=YOL069W;Name=NUF2
XII	S-MART	transcript	626502	626930	.	-	.	seqedit=false;p_id=P3825;gene_id=YLR245C;tss_id=TSS4991;nbOverlaps=0;ID=YLR245C;Name=CDD1
XV	S-MART	transcript	197220	198725	.	-	.	seqedit=false;p_id=P4389;gene_id=YOL070C;tss_id=TSS6110;nbOverlaps=0;ID=YOL070C;Name=NBA1
XII	S-MART	transcript	627118	628197	.	+	.	seqedit=false;p_id=P4101;gene_id=YLR246W;tss_id=TSS3507;nbOverlaps=0;ID=YLR246W;Name=ERF2
IV	S-MART	transcript	1356065	1357369	.	+	.	seqedit=false;p_id=P3660;gene_id=YDR448W;tss_id=TSS5954;nbOverlaps=0;ID=YDR448W;Name=ADA2
XVI	S-MART	transcript	558385	559935	.	+	.	seqedit=false;p_id=P4416;gene_id=YPR002W;tss_id=TSS4553;nbOverlaps=0;ID=YPR002W;Name=PDH1
XV	S-MART	transcript	196507	196995	.	+	.	seqedit=false;p_id=P18;gene_id=YOL071W;tss_id=TSS3301;nbOverlaps=0;ID=YOL071W;Name=EMI5
XII	S-MART	transcript	628684	633354	.	-	.	seqedit=false;p_id=P5801;gene_id=YLR247C;tss_id=TSS3928;nbOverlaps=0;ID=YLR247C;Name=IRC20
IV	S-MART	transcript	1357580	1358902	.	-	.	seqedit=false;p_id=P3072;gene_id=YDR449C;tss_id=TSS5383;nbOverlaps=0;ID=YDR449C;Name=UTP6
XII	S-MART	transcript	634252	636084	.	+	.	seqedit=false;p_id=P701;gene_id=YLR248W;tss_id=TSS6952;nbOverlaps=0;ID=YLR248W;Name=RCK2
IV	S-MART	transcript	1359923	1360798	.	+	.	seqedit=false;p_id=P1043;gene_id=YDR450W;tss_id=TSS4842;nbOverlaps=0;ID=YDR450W;Name=RPS18A
IV	S-MART	exon	1359923	1359969	.	+	.	ID=YDR450W-exon1;Name=RPS18A-exon1;Parent=YDR450W
IV	S-MART	exon	1360405	1360798	.	+	.	ID=YDR450W-exon2;Name=RPS18A-exon2;Parent=YDR450W
XII	S-MART	transcript	636780	639914	.	+	.	seqedit=false;p_id=P789;gene_id=YLR249W;tss_id=TSS6428;nbOverlaps=0;ID=YLR249W;Name=YEF3
XVI	S-MART	transcript	220167	222773	.	-	.	seqedit=false;p_id=P4960;gene_id=YPL174C;tss_id=TSS5089;nbOverlaps=0;ID=YPL174C;Name=NIP100
XV	S-MART	transcript	193832	194800	.	-	.	seqedit=false;p_id=P4976;gene_id=YOL073C;tss_id=TSS2354;nbOverlaps=0;ID=YOL073C;Name=YOL073C
XII	S-MART	transcript	640317	641021	.	+	.	seqedit=false;p_id=P3135;gene_id=YLR250W;tss_id=TSS2371;nbOverlaps=0;ID=YLR250W;Name=SSP120
XV	S-MART	transcript	189658	193542	.	-	.	seqedit=false;p_id=P1554;gene_id=YOL075C;tss_id=TSS5763;nbOverlaps=0;ID=YOL075C;Name=YOL075C
XII	S-MART	transcript	641464	642057	.	+	.	seqedit=false;p_id=P515;gene_id=YLR251W;tss_id=TSS3128;nbOverlaps=0;ID=YLR251W;Name=SYM1
IV	S-MART	transcript	1361120	1362181	.	-	.	seqedit=false;p_id=P1900;gene_id=YDR451C;tss_id=TSS559;nbOverlaps=0;ID=YDR451C;Name=YHP1
IV	S-MART	transcript	284581	285165	.	-	.	seqedit=false;p_id=P5705;gene_id=YDL098C;tss_id=TSS2782;nbOverlaps=0;ID=YDL098C;Name=SNU23
IV	S-MART	transcript	283419	284444	.	+	.	seqedit=false;p_id=P5560;gene_id=YDL099W;tss_id=TSS6512;nbOverlaps=0;ID=YDL099W;Name=BUG1
IV	S-MART	transcript	282112	283176	.	-	.	seqedit=false;p_id=P1804;gene_id=YDL100C;tss_id=TSS3373;nbOverlaps=0;ID=YDL100C;Name=GET3
X	S-MART	transcript	337884	338003	.	-	.	seqedit=false;p_id=P5641;gene_id=YJL052C-A;tss_id=TSS6946;nbOverlaps=0;ID=YJL052C-A;Name=YJL052C-A
IV	S-MART	transcript	280307	281848	.	-	.	seqedit=false;p_id=P4087;gene_id=YDL101C;tss_id=TSS3127;nbOverlaps=0;ID=YDL101C;Name=DUN1
IV	S-MART	transcript	276872	280165	.	+	.	seqedit=false;p_id=P3641;gene_id=YDL102W;tss_id=TSS2000;nbOverlaps=0;ID=YDL102W;Name=POL3
IV	S-MART	transcript	1362878	1364902	.	+	.	seqedit=false;p_id=P4830;gene_id=YDR452W;tss_id=TSS4456;nbOverlaps=0;ID=YDR452W;Name=PPN1
IV	S-MART	transcript	275148	276581	.	-	.	seqedit=false;p_id=P6612;gene_id=YDL103C;tss_id=TSS7062;nbOverlaps=0;ID=YDL103C;Name=QRI1
IV	S-MART	transcript	273653	274876	.	-	.	seqedit=false;p_id=P2033;gene_id=YDL104C;tss_id=TSS2458;nbOverlaps=0;ID=YDL104C;Name=QRI7
IV	S-MART	transcript	272389	273597	.	+	.	seqedit=false;p_id=P4135;gene_id=YDL105W;tss_id=TSS5951;nbOverlaps=0;ID=YDL105W;Name=NSE4
IV	S-MART	transcript	270222	271901	.	-	.	seqedit=false;p_id=P6180;gene_id=YDL106C;tss_id=TSS1632;nbOverlaps=0;ID=YDL106C;Name=PHO2
XIV	S-MART	transcript	276502	279897	.	+	.	seqedit=false;p_id=P1128;gene_id=YNL192W;tss_id=TSS946;nbOverlaps=0;ID=YNL192W;Name=CHS1
IV	S-MART	transcript	268921	269976	.	+	.	seqedit=false;p_id=P3902;gene_id=YDL107W;tss_id=TSS5983;nbOverlaps=0;ID=YDL107W;Name=MSS2
IV	S-MART	transcript	267698	268699	.	+	.	seqedit=false;p_id=P2166;gene_id=YDL108W;tss_id=TSS2234;nbOverlaps=0;ID=YDL108W;Name=KIN28
IV	S-MART	exon	267698	267725	.	+	.	ID=YDL108W-exon1;Name=KIN28-exon1;Parent=YDL108W
IV	S-MART	exon	267807	268699	.	+	.	ID=YDL108W-exon2;Name=KIN28-exon2;Parent=YDL108W
IV	S-MART	transcript	1365072	1365662	.	-	.	seqedit=false;p_id=P2528;gene_id=YDR453C;tss_id=TSS4749;nbOverlaps=0;ID=YDR453C;Name=TSA2
IV	S-MART	transcript	264512	264964	.	-	.	seqedit=false;p_id=P4457;gene_id=YDL110C;tss_id=TSS5831;nbOverlaps=0;ID=YDL110C;Name=TMA17
IV	S-MART	transcript	265258	267201	.	-	.	seqedit=false;p_id=P5393;gene_id=YDL109C;tss_id=TSS6445;nbOverlaps=0;ID=YDL109C;Name=YDL109C
X	S-MART	transcript	335898	337037	.	+	.	seqedit=false;p_id=P485;gene_id=YJL053W;tss_id=TSS5963;nbOverlaps=0;ID=YJL053W;Name=PEP8
IV	S-MART	transcript	263313	264110	.	-	.	seqedit=false;p_id=P1855;gene_id=YDL111C;tss_id=TSS5179;nbOverlaps=0;ID=YDL111C;Name=RRP42
XVI	S-MART	transcript	218630	220088	.	+	.	seqedit=false;p_id=P2180;gene_id=YPL175W;tss_id=TSS4283;nbOverlaps=0;ID=YPL175W;Name=SPT14
XVI	S-MART	exon	218630	218646	.	+	.	ID=YPL175W-exon1;Name=SPT14-exon1;Parent=YPL175W
XVI	S-MART	exon	218747	220088	.	+	.	ID=YPL175W-exon2;Name=SPT14-exon2;Parent=YPL175W
IV	S-MART	transcript	258915	263225	.	+	.	seqedit=false;p_id=P6386;gene_id=YDL112W;tss_id=TSS2616;nbOverlaps=0;ID=YDL112W;Name=TRM3
II	S-MART	transcript	742160	742576	.	-	.	seqedit=false;p_id=P1133;gene_id=YBR269C;tss_id=TSS4012;nbOverlaps=0;ID=YBR269C;Name=FMP21
IV	S-MART	transcript	256633	258555	.	-	.	seqedit=false;p_id=P832;gene_id=YDL113C;tss_id=TSS3965;nbOverlaps=0;ID=YDL113C;Name=ATG20
IV	S-MART	transcript	254935	255048	.	+	.	seqedit=false;p_id=P201;gene_id=YDL114W-A;tss_id=TSS644;nbOverlaps=0;ID=YDL114W-A;Name=YDL114W-A
IV	S-MART	transcript	255604	256530	.	+	.	seqedit=false;p_id=P4669;gene_id=YDL114W;tss_id=TSS925;nbOverlaps=0;ID=YDL114W;Name=YDL114W
IV	S-MART	transcript	253995	255126	.	-	.	seqedit=false;p_id=P4357;gene_id=YDL115C;tss_id=TSS5729;nbOverlaps=0;ID=YDL115C;Name=IWR1
IV	S-MART	exon	253995	254974	.	-	.	ID=YDL115C-exon1;Name=IWR1-exon1;Parent=YDL115C
IV	S-MART	exon	255045	255126	.	-	.	ID=YDL115C-exon2;Name=IWR1-exon2;Parent=YDL115C
XIV	S-MART	transcript	274368	276044	.	+	.	seqedit=false;p_id=P140;gene_id=YNL193W;tss_id=TSS5529;nbOverlaps=0;ID=YNL193W;Name=YNL193W
IV	S-MART	transcript	1367485	1369386	.	+	.	seqedit=false;p_id=P225;gene_id=YDR456W;tss_id=TSS941;nbOverlaps=0;ID=YDR456W;Name=NHX1
IV	S-MART	transcript	251566	253746	.	+	.	seqedit=false;p_id=P1995;gene_id=YDL116W;tss_id=TSS3710;nbOverlaps=0;ID=YDL116W;Name=NUP84
IV	S-MART	transcript	248581	251238	.	+	.	seqedit=false;p_id=P4724;gene_id=YDL117W;tss_id=TSS5084;nbOverlaps=0;ID=YDL117W;Name=CYK3
IV	S-MART	transcript	245923	246447	.	+	.	seqedit=false;p_id=P4062;gene_id=YDL120W;tss_id=TSS572;nbOverlaps=0;ID=YDL120W;Name=YFH1
IV	S-MART	transcript	247302	247682	.	+	.	seqedit=false;p_id=P1623;gene_id=YDL118W;tss_id=TSS4215;nbOverlaps=0;ID=YDL118W;Name=YDL118W
XIV	S-MART	transcript	272710	273615	.	-	.	seqedit=false;p_id=P154;gene_id=YNL194C;tss_id=TSS5677;nbOverlaps=0;ID=YNL194C;Name=YNL194C
IV	S-MART	transcript	246689	247612	.	-	.	seqedit=false;p_id=P6403;gene_id=YDL119C;tss_id=TSS151;nbOverlaps=0;ID=YDL119C;Name=YDL119C
IV	S-MART	transcript	242552	244981	.	+	.	seqedit=false;p_id=P2253;gene_id=YDL122W;tss_id=TSS4392;nbOverlaps=0;ID=YDL122W;Name=UBP1
II	S-MART	transcript	746361	747803	.	-	.	seqedit=false;p_id=P5534;gene_id=YBR272C;tss_id=TSS298;nbOverlaps=0;ID=YBR272C;Name=HSM3
IV	S-MART	transcript	245133	245582	.	-	.	seqedit=false;p_id=P1138;gene_id=YDL121C;tss_id=TSS3606;nbOverlaps=0;ID=YDL121C;Name=YDL121C
IV	S-MART	transcript	241418	241840	.	+	.	seqedit=false;p_id=P4683;gene_id=YDL123W;tss_id=TSS6335;nbOverlaps=0;ID=YDL123W;Name=SNA4
IV	S-MART	transcript	239019	239606	.	-	.	seqedit=false;p_id=P1270;gene_id=YDL125C;tss_id=TSS2448;nbOverlaps=0;ID=YDL125C;Name=HNT1
IV	S-MART	exon	239019	239398	.	-	.	ID=YDL125C-exon1;Name=HNT1-exon1;Parent=YDL125C
IV	S-MART	exon	239510	239606	.	-	.	ID=YDL125C-exon2;Name=HNT1-exon2;Parent=YDL125C
IV	S-MART	transcript	240259	241197	.	+	.	seqedit=false;p_id=P2095;gene_id=YDL124W;tss_id=TSS2046;nbOverlaps=0;ID=YDL124W;Name=YDL124W
XIV	S-MART	transcript	271523	272308	.	-	.	seqedit=false;p_id=P3143;gene_id=YNL195C;tss_id=TSS1094;nbOverlaps=0;ID=YNL195C;Name=YNL195C
IV	S-MART	transcript	1369790	1379596	.	+	.	seqedit=false;p_id=P5339;gene_id=YDR457W;tss_id=TSS1522;nbOverlaps=0;ID=YDR457W;Name=TOM1
IV	S-MART	transcript	236157	238664	.	-	.	seqedit=false;p_id=P6011;gene_id=YDL126C;tss_id=TSS2206;nbOverlaps=0;ID=YDL126C;Name=CDC48
IV	S-MART	transcript	234927	235853	.	+	.	seqedit=false;p_id=P1668;gene_id=YDL127W;tss_id=TSS3120;nbOverlaps=0;ID=YDL127W;Name=PCL2
IV	S-MART	transcript	232652	233887	.	+	.	seqedit=false;p_id=P2794;gene_id=YDL128W;tss_id=TSS4127;nbOverlaps=0;ID=YDL128W;Name=VCX1
IV	S-MART	transcript	229906	230527	.	+	.	seqedit=false;p_id=P521;gene_id=YDL130W;tss_id=TSS440;nbOverlaps=0;ID=YDL130W;Name=RPP1B
IV	S-MART	exon	229906	230019	.	+	.	ID=YDL130W-exon1;Name=RPP1B-exon1;Parent=YDL130W
IV	S-MART	exon	230321	230527	.	+	.	ID=YDL130W-exon2;Name=RPP1B-exon2;Parent=YDL130W
XIV	S-MART	transcript	267608	269593	.	-	.	seqedit=false;p_id=P1691;gene_id=YNL197C;tss_id=TSS7015;nbOverlaps=0;ID=YNL197C;Name=WHI3
IV	S-MART	transcript	231024	231899	.	+	.	seqedit=false;p_id=P5222;gene_id=YDL129W;tss_id=TSS4605;nbOverlaps=0;ID=YDL129W;Name=YDL129W
XIII	S-MART	transcript	603868	605520	.	-	.	seqedit=false;p_id=P3152;gene_id=YMR171C;tss_id=TSS953;nbOverlaps=0;ID=YMR171C;Name=EAR1
II	S-MART	transcript	748061	749371	.	-	.	seqedit=false;p_id=P3619;gene_id=YBR273C;tss_id=TSS3659;nbOverlaps=0;ID=YBR273C;Name=UBX7
IV	S-MART	transcript	229171	229431	.	+	.	seqedit=false;p_id=P4050;gene_id=YDL130W-A;tss_id=TSS5858;nbOverlaps=0;ID=YDL130W-A;Name=STF1
IV	S-MART	transcript	227393	228715	.	+	.	seqedit=false;p_id=P1501;gene_id=YDL131W;tss_id=TSS6311;nbOverlaps=0;ID=YDL131W;Name=LYS21
IV	S-MART	transcript	224304	226751	.	+	.	seqedit=false;p_id=P5937;gene_id=YDL132W;tss_id=TSS3664;nbOverlaps=0;ID=YDL132W;Name=CDC53
X	S-MART	transcript	326242	327873	.	-	.	seqedit=false;p_id=P1962;gene_id=YJL058C;tss_id=TSS1025;nbOverlaps=0;ID=YJL058C;Name=BIT61
IV	S-MART	transcript	221724	221801	.	-	.	seqedit=false;p_id=P1669;gene_id=YDL133C-A;tss_id=TSS2047;nbOverlaps=0;ID=YDL133C-A;Name=RPL41B
IV	S-MART	transcript	222427	223740	.	+	.	seqedit=false;p_id=P2212;gene_id=YDL133W;tss_id=TSS1722;nbOverlaps=0;ID=YDL133W;Name=SRF1
IV	S-MART	transcript	1382319	1383443	.	-	.	seqedit=false;p_id=P3236;gene_id=YDR459C;tss_id=TSS5631;nbOverlaps=0;ID=YDR459C;Name=PFA5
IV	S-MART	transcript	219662	220771	.	-	.	seqedit=false;p_id=P2563;gene_id=YDL134C;tss_id=TSS1592;nbOverlaps=0;ID=YDL134C;Name=PPH21
IV	S-MART	transcript	218680	219288	.	-	.	seqedit=false;p_id=P4936;gene_id=YDL135C;tss_id=TSS3813;nbOverlaps=0;ID=YDL135C;Name=RDI1
IV	S-MART	transcript	217600	218367	.	+	.	seqedit=false;p_id=P5301;gene_id=YDL136W;tss_id=TSS2287;nbOverlaps=0;ID=YDL136W;Name=RPL35B
IV	S-MART	exon	217600	217602	.	+	.	ID=YDL136W-exon1;Name=RPL35B-exon1;Parent=YDL136W
IV	S-MART	exon	218008	218367	.	+	.	ID=YDL136W-exon2;Name=RPL35B-exon2;Parent=YDL136W
XIV	S-MART	transcript	266514	266816	.	-	.	seqedit=false;p_id=P3015;gene_id=YNL198C;tss_id=TSS1807;nbOverlaps=0;ID=YNL198C;Name=YNL198C
IV	S-MART	transcript	216529	217074	.	+	.	seqedit=false;p_id=P2540;gene_id=YDL137W;tss_id=TSS4863;nbOverlaps=0;ID=YDL137W;Name=ARF2
IV	S-MART	transcript	1383811	1384776	.	+	.	seqedit=false;p_id=P13;gene_id=YDR460W;tss_id=TSS4604;nbOverlaps=0;ID=YDR460W;Name=TFB3
IV	S-MART	transcript	213351	215642	.	+	.	seqedit=false;p_id=P94;gene_id=YDL138W;tss_id=TSS3150;nbOverlaps=0;ID=YDL138W;Name=RGT2
IV	S-MART	transcript	211375	212046	.	-	.	seqedit=false;p_id=P1898;gene_id=YDL139C;tss_id=TSS5194;nbOverlaps=0;ID=YDL139C;Name=SCM3
IV	S-MART	transcript	205360	210561	.	-	.	seqedit=false;p_id=P3668;gene_id=YDL140C;tss_id=TSS1378;nbOverlaps=0;ID=YDL140C;Name=RPO21
IV	S-MART	transcript	203039	205111	.	+	.	seqedit=false;p_id=P301;gene_id=YDL141W;tss_id=TSS5468;nbOverlaps=0;ID=YDL141W;Name=BPL1
XIV	S-MART	transcript	260627	263203	.	-	.	seqedit=false;p_id=P1235;gene_id=YNL201C;tss_id=TSS226;nbOverlaps=0;ID=YNL201C;Name=PSY2
IV	S-MART	transcript	201719	202570	.	-	.	seqedit=false;p_id=P1800;gene_id=YDL142C;tss_id=TSS1941;nbOverlaps=0;ID=YDL142C;Name=CRD1
IV	S-MART	transcript	199996	201582	.	+	.	seqedit=false;p_id=P2995;gene_id=YDL143W;tss_id=TSS2479;nbOverlaps=0;ID=YDL143W;Name=CCT4
IV	S-MART	transcript	1385524	1385766	.	-	.	seqedit=false;p_id=P3836;gene_id=YDR461C-A;tss_id=TSS4427;nbOverlaps=0;ID=YDR461C-A;Name=YDR461C-A
IV	S-MART	transcript	194571	198176	.	-	.	seqedit=false;p_id=P3533;gene_id=YDL145C;tss_id=TSS6142;nbOverlaps=0;ID=YDL145C;Name=COP1
IV	S-MART	transcript	198662	199732	.	-	.	seqedit=false;p_id=P489;gene_id=YDL144C;tss_id=TSS2598;nbOverlaps=0;ID=YDL144C;Name=YDL144C
IV	S-MART	transcript	192750	194225	.	+	.	seqedit=false;p_id=P3950;gene_id=YDL146W;tss_id=TSS4973;nbOverlaps=0;ID=YDL146W;Name=LDB17
IV	S-MART	transcript	190924	192261	.	+	.	seqedit=false;p_id=P2998;gene_id=YDL147W;tss_id=TSS149;nbOverlaps=0;ID=YDL147W;Name=RPN5
XIV	S-MART	transcript	263713	264453	.	-	.	seqedit=false;p_id=P4567;gene_id=YNL200C;tss_id=TSS1317;nbOverlaps=0;ID=YNL200C;Name=YNL200C
XIII	S-MART	transcript	712316	713671	.	+	.	seqedit=false;p_id=P5869;gene_id=YMR220W;tss_id=TSS6568;nbOverlaps=0;ID=YMR220W;Name=ERG8
IV	S-MART	transcript	1385176	1385286	.	+	.	seqedit=false;p_id=P6413;gene_id=YDR461W;tss_id=TSS6752;nbOverlaps=0;ID=YDR461W;Name=MFA1
XIII	S-MART	transcript	715638	716309	.	-	.	seqedit=false;p_id=P3393;gene_id=YMR222C;tss_id=TSS990;nbOverlaps=0;ID=YMR222C;Name=FSH2
XIII	S-MART	transcript	713931	715445	.	-	.	seqedit=false;p_id=P5618;gene_id=YMR221C;tss_id=TSS2306;nbOverlaps=0;ID=YMR221C;Name=YMR221C
XIII	S-MART	transcript	716715	718130	.	+	.	seqedit=false;p_id=P3563;gene_id=YMR223W;tss_id=TSS3898;nbOverlaps=0;ID=YMR223W;Name=UBP8
XIII	S-MART	transcript	718575	720653	.	-	.	seqedit=false;p_id=P1719;gene_id=YMR224C;tss_id=TSS2498;nbOverlaps=0;ID=YMR224C;Name=MRE11
X	S-MART	transcript	317284	319776	.	+	.	seqedit=false;p_id=P72;gene_id=YJL062W;tss_id=TSS3855;nbOverlaps=0;ID=YJL062W;Name=LAS21
XIII	S-MART	transcript	720960	721403	.	-	.	seqedit=false;p_id=P3524;gene_id=YMR225C;tss_id=TSS6698;nbOverlaps=0;ID=YMR225C;Name=MRPL44
XIII	S-MART	exon	720960	721198	.	-	.	ID=YMR225C-exon1;Name=MRPL44-exon1;Parent=YMR225C
XIII	S-MART	exon	721346	721403	.	-	.	ID=YMR225C-exon2;Name=MRPL44-exon2;Parent=YMR225C
IV	S-MART	transcript	1386073	1386516	.	+	.	seqedit=false;p_id=P5247;gene_id=YDR462W;tss_id=TSS2757;nbOverlaps=0;ID=YDR462W;Name=MRPL28
XII	S-MART	transcript	726069	728051	.	+	.	seqedit=false;p_id=P3881;gene_id=YLR299W;tss_id=TSS1898;nbOverlaps=0;ID=YLR299W;Name=ECM38
XIII	S-MART	transcript	722613	724385	.	-	.	seqedit=false;p_id=P673;gene_id=YMR227C;tss_id=TSS3420;nbOverlaps=0;ID=YMR227C;Name=TAF7
XIII	S-MART	transcript	721593	722396	.	-	.	seqedit=false;p_id=P2577;gene_id=YMR226C;tss_id=TSS4930;nbOverlaps=0;ID=YMR226C;Name=YMR226C
XIII	S-MART	transcript	724626	725651	.	+	.	seqedit=false;p_id=P1889;gene_id=YMR228W;tss_id=TSS4124;nbOverlaps=0;ID=YMR228W;Name=MTF1
X	S-MART	transcript	316723	316980	.	+	.	seqedit=false;p_id=P3948;gene_id=YJL062W-A;tss_id=TSS2215;nbOverlaps=0;ID=YJL062W-A;Name=COA3
XIII	S-MART	transcript	725934	731123	.	-	.	seqedit=false;p_id=P2027;gene_id=YMR229C;tss_id=TSS1068;nbOverlaps=0;ID=YMR229C;Name=RRP5
XIII	S-MART	transcript	732414	733141	.	+	.	seqedit=false;p_id=P2842;gene_id=YMR230W;tss_id=TSS1030;nbOverlaps=0;ID=YMR230W;Name=RPS10B
XIII	S-MART	exon	732414	732465	.	+	.	ID=YMR230W-exon1;Name=RPS10B-exon1;Parent=YMR230W
XIII	S-MART	exon	732876	733141	.	+	.	ID=YMR230W-exon2;Name=RPS10B-exon2;Parent=YMR230W
IV	S-MART	transcript	1386816	1388375	.	+	.	seqedit=false;p_id=P5281;gene_id=YDR463W;tss_id=TSS956;nbOverlaps=0;ID=YDR463W;Name=STP1
XIII	S-MART	transcript	733268	733456	.	+	.	seqedit=false;p_id=P4251;gene_id=YMR230W-A;tss_id=TSS6703;nbOverlaps=0;ID=YMR230W-A;Name=YMR230W-A
XIII	S-MART	transcript	733545	736634	.	+	.	seqedit=false;p_id=P2374;gene_id=YMR231W;tss_id=TSS3053;nbOverlaps=0;ID=YMR231W;Name=PEP5
X	S-MART	transcript	315759	316475	.	-	.	seqedit=false;p_id=P2504;gene_id=YJL063C;tss_id=TSS717;nbOverlaps=0;ID=YJL063C;Name=MRPL8
XIII	S-MART	transcript	736926	738959	.	+	.	seqedit=false;p_id=P4942;gene_id=YMR232W;tss_id=TSS1418;nbOverlaps=0;ID=YMR232W;Name=FUS2
XIII	S-MART	transcript	739185	739865	.	+	.	seqedit=false;p_id=P4858;gene_id=YMR233W;tss_id=TSS616;nbOverlaps=0;ID=YMR233W;Name=TRI1
IV	S-MART	transcript	1392492	1392680	.	-	.	seqedit=false;p_id=P4250;gene_id=YDR464C-A;tss_id=TSS836;nbOverlaps=0;ID=YDR464C-A;Name=YDR464C-A
XIII	S-MART	transcript	740266	741312	.	+	.	seqedit=false;p_id=P4664;gene_id=YMR234W;tss_id=TSS3193;nbOverlaps=0;ID=YMR234W;Name=RNH1
XIII	S-MART	transcript	741512	742735	.	-	.	seqedit=false;p_id=P3959;gene_id=YMR235C;tss_id=TSS5055;nbOverlaps=0;ID=YMR235C;Name=RNA1
XIII	S-MART	transcript	742971	743444	.	+	.	seqedit=false;p_id=P589;gene_id=YMR236W;tss_id=TSS6812;nbOverlaps=0;ID=YMR236W;Name=TAF9
XIII	S-MART	transcript	743749	745923	.	+	.	seqedit=false;p_id=P2372;gene_id=YMR237W;tss_id=TSS1454;nbOverlaps=0;ID=YMR237W;Name=BCH1
XII	S-MART	transcript	673828	673944	.	-	.	seqedit=false;p_id=P1426;gene_id=YLR264C-A;tss_id=TSS2590;nbOverlaps=0;ID=YLR264C-A;Name=YLR264C-A
XIII	S-MART	transcript	746353	747729	.	+	.	seqedit=false;p_id=P6156;gene_id=YMR238W;tss_id=TSS5910;nbOverlaps=0;ID=YMR238W;Name=DFG5
XIII	S-MART	transcript	748262	749677	.	-	.	seqedit=false;p_id=P5018;gene_id=YMR239C;tss_id=TSS4952;nbOverlaps=0;ID=YMR239C;Name=RNT1
IV	S-MART	transcript	1388872	1393179	.	+	.	seqedit=false;p_id=P3466;gene_id=YDR464W;tss_id=TSS3759;nbOverlaps=0;ID=YDR464W;Name=SPP41
XIII	S-MART	transcript	749930	751240	.	-	.	seqedit=false;p_id=P2896;gene_id=YMR240C;tss_id=TSS5957;nbOverlaps=0;ID=YMR240C;Name=CUS1
XIII	S-MART	transcript	751961	752905	.	+	.	seqedit=false;p_id=P4792;gene_id=YMR241W;tss_id=TSS677;nbOverlaps=0;ID=YMR241W;Name=YHM2
XIII	S-MART	transcript	753225	754220	.	-	.	seqedit=false;p_id=P5591;gene_id=YMR242C;tss_id=TSS4382;nbOverlaps=0;ID=YMR242C;Name=RPL20A
XIII	S-MART	exon	753225	753742	.	-	.	ID=YMR242C-exon1;Name=RPL20A-exon1;Parent=YMR242C
XIII	S-MART	exon	754220	754220	.	-	.	ID=YMR242C-exon2;Name=RPL20A-exon2;Parent=YMR242C
X	S-MART	transcript	315175	315570	.	+	.	seqedit=false;p_id=P5205;gene_id=YJL064W;tss_id=TSS1822;nbOverlaps=0;ID=YJL064W;Name=YJL064W
XIII	S-MART	transcript	754297	754386	.	+	.	seqedit=false;p_id=P2554;gene_id=YMR242W-A;tss_id=TSS3191;nbOverlaps=0;ID=YMR242W-A;Name=YMR242W-A
IV	S-MART	transcript	1393336	1394574	.	-	.	seqedit=false;p_id=P6129;gene_id=YDR465C;tss_id=TSS2397;nbOverlaps=0;ID=YDR465C;Name=RMT2
XIII	S-MART	transcript	754838	756166	.	-	.	seqedit=false;p_id=P3855;gene_id=YMR243C;tss_id=TSS3794;nbOverlaps=0;ID=YMR243C;Name=ZRC1
XIII	S-MART	transcript	758517	758831	.	-	.	seqedit=false;p_id=P1144;gene_id=YMR244C-A;tss_id=TSS6860;nbOverlaps=0;ID=YMR244C-A;Name=YMR244C-A
XIII	S-MART	transcript	759807	761891	.	+	.	seqedit=false;p_id=P4112;gene_id=YMR246W;tss_id=TSS6037;nbOverlaps=0;ID=YMR246W;Name=FAA4
XIII	S-MART	transcript	757250	758317	.	+	.	seqedit=false;p_id=P693;gene_id=YMR244W;tss_id=TSS6623;nbOverlaps=0;ID=YMR244W;Name=YMR244W
X	S-MART	transcript	314114	314872	.	-	.	seqedit=false;p_id=P2004;gene_id=YJL066C;tss_id=TSS249;nbOverlaps=0;ID=YJL066C;Name=MPM1
XIII	S-MART	transcript	758563	759183	.	+	.	seqedit=false;p_id=P5554;gene_id=YMR245W;tss_id=TSS2658;nbOverlaps=0;ID=YMR245W;Name=YMR245W
XIII	S-MART	transcript	763351	768039	.	-	.	seqedit=false;p_id=P5256;gene_id=YMR247C;tss_id=TSS6665;nbOverlaps=0;ID=YMR247C;Name=RKR1
IV	S-MART	transcript	1395121	1397817	.	+	.	seqedit=false;p_id=P1315;gene_id=YDR466W;tss_id=TSS6297;nbOverlaps=0;ID=YDR466W;Name=PKH3
XII	S-MART	transcript	728955	730301	.	+	.	seqedit=false;p_id=P3771;gene_id=YLR300W;tss_id=TSS5604;nbOverlaps=0;ID=YLR300W;Name=EXG1
XIII	S-MART	transcript	769283	769426	.	+	.	seqedit=false;p_id=P4514;gene_id=YMR247W-A;tss_id=TSS3845;nbOverlaps=0;ID=YMR247W-A;Name=YMR247W-A
XIII	S-MART	transcript	770801	772558	.	+	.	seqedit=false;p_id=P3644;gene_id=YMR250W;tss_id=TSS4841;nbOverlaps=0;ID=YMR250W;Name=GAD1
XIII	S-MART	transcript	772915	774015	.	+	.	seqedit=false;p_id=P5137;gene_id=YMR251W;tss_id=TSS148;nbOverlaps=0;ID=YMR251W;Name=GTO3
XIII	S-MART	transcript	774752	774931	.	+	.	seqedit=false;p_id=P2786;gene_id=YMR251W-A;tss_id=TSS6443;nbOverlaps=0;ID=YMR251W-A;Name=HOR7
X	S-MART	transcript	310922	312706	.	-	.	seqedit=false;p_id=P466;gene_id=YJL069C;tss_id=TSS1152;nbOverlaps=0;ID=YJL069C;Name=UTP18
XIII	S-MART	transcript	778001	778567	.	+	.	seqedit=false;p_id=P1438;gene_id=YMR255W;tss_id=TSS553;nbOverlaps=0;ID=YMR255W;Name=GFD1
XIII	S-MART	transcript	775315	775719	.	-	.	seqedit=false;p_id=P3786;gene_id=YMR252C;tss_id=TSS5058;nbOverlaps=0;ID=YMR252C;Name=YMR252C
II	S-MART	transcript	774700	776313	.	+	.	seqedit=false;p_id=P1450;gene_id=YBR286W;tss_id=TSS2876;nbOverlaps=0;ID=YBR286W;Name=APE3
XIII	S-MART	transcript	775946	777190	.	-	.	seqedit=false;p_id=P1093;gene_id=YMR253C;tss_id=TSS5299;nbOverlaps=0;ID=YMR253C;Name=YMR253C
XIII	S-MART	transcript	777615	777923	.	-	.	seqedit=false;p_id=P2369;gene_id=YMR254C;tss_id=TSS907;nbOverlaps=0;ID=YMR254C;Name=YMR254C
XIII	S-MART	transcript	778945	779127	.	-	.	seqedit=false;p_id=P5815;gene_id=YMR256C;tss_id=TSS6953;nbOverlaps=0;ID=YMR256C;Name=COX7
XIII	S-MART	transcript	779629	782031	.	-	.	seqedit=false;p_id=P5844;gene_id=YMR257C;tss_id=TSS6640;nbOverlaps=0;ID=YMR257C;Name=PET111
X	S-MART	transcript	314084	314434	.	+	.	seqedit=false;p_id=P3778;gene_id=YJL067W;tss_id=TSS3801;nbOverlaps=0;ID=YJL067W;Name=YJL067W
XIII	S-MART	transcript	782620	784281	.	-	.	seqedit=false;p_id=P3598;gene_id=YMR258C;tss_id=TSS5906;nbOverlaps=0;ID=YMR258C;Name=ROY1
XIII	S-MART	transcript	789378	789839	.	-	.	seqedit=false;p_id=P5744;gene_id=YMR260C;tss_id=TSS2895;nbOverlaps=0;ID=YMR260C;Name=TIF11
IV	S-MART	transcript	1397583	1397909	.	-	.	seqedit=false;p_id=P2112;gene_id=YDR467C;tss_id=TSS4332;nbOverlaps=0;ID=YDR467C;Name=YDR467C
XIII	S-MART	transcript	784621	788883	.	-	.	seqedit=false;p_id=P2478;gene_id=YMR259C;tss_id=TSS5586;nbOverlaps=0;ID=YMR259C;Name=YMR259C
XIII	S-MART	transcript	790205	793369	.	-	.	seqedit=false;p_id=P3785;gene_id=YMR261C;tss_id=TSS905;nbOverlaps=0;ID=YMR261C;Name=TPS3
XIII	S-MART	transcript	794919	795524	.	+	.	seqedit=false;p_id=P3338;gene_id=YMR263W;tss_id=TSS1452;nbOverlaps=0;ID=YMR263W;Name=SAP30
XIII	S-MART	transcript	793726	794667	.	+	.	seqedit=false;p_id=P6134;gene_id=YMR262W;tss_id=TSS5627;nbOverlaps=0;ID=YMR262W;Name=YMR262W
X	S-MART	transcript	313016	313915	.	-	.	seqedit=false;p_id=P1115;gene_id=YJL068C;tss_id=TSS5030;nbOverlaps=0;ID=YJL068C;Name=YJL068C
XIII	S-MART	transcript	795805	796416	.	+	.	seqedit=false;p_id=P1585;gene_id=YMR264W;tss_id=TSS4168;nbOverlaps=0;ID=YMR264W;Name=CUE1
XIII	S-MART	transcript	798518	801379	.	+	.	seqedit=false;p_id=P4162;gene_id=YMR266W;tss_id=TSS4050;nbOverlaps=0;ID=YMR266W;Name=RSN1
IV	S-MART	transcript	1399015	1399542	.	+	.	seqedit=false;p_id=P2092;gene_id=YDR469W;tss_id=TSS1409;nbOverlaps=0;ID=YDR469W;Name=SDC1
XVI	S-MART	transcript	564007	565041	.	-	.	seqedit=false;p_id=P5214;gene_id=YPR004C;tss_id=TSS15;nbOverlaps=0;ID=YPR004C;Name=AIM45
XIII	S-MART	transcript	796540	797925	.	-	.	seqedit=false;p_id=P5633;gene_id=YMR265C;tss_id=TSS227;nbOverlaps=0;ID=YMR265C;Name=YMR265C
XIII	S-MART	transcript	801772	802704	.	+	.	seqedit=false;p_id=P723;gene_id=YMR267W;tss_id=TSS3562;nbOverlaps=0;ID=YMR267W;Name=PPA2
XIII	S-MART	transcript	802888	804222	.	-	.	seqedit=false;p_id=P1380;gene_id=YMR268C;tss_id=TSS5128;nbOverlaps=0;ID=YMR268C;Name=PRP24
XIII	S-MART	transcript	804456	805091	.	+	.	seqedit=false;p_id=P5638;gene_id=YMR269W;tss_id=TSS1937;nbOverlaps=0;ID=YMR269W;Name=TMA23
XII	S-MART	transcript	385534	386175	.	+	.	seqedit=false;p_id=P3892;gene_id=YLR119W;tss_id=TSS5240;nbOverlaps=0;ID=YLR119W;Name=SRN2
XIII	S-MART	transcript	805326	806423	.	-	.	seqedit=false;p_id=P5011;gene_id=YMR270C;tss_id=TSS6429;nbOverlaps=0;ID=YMR270C;Name=RRN9
XIII	S-MART	transcript	806865	807548	.	-	.	seqedit=false;p_id=P4286;gene_id=YMR271C;tss_id=TSS1783;nbOverlaps=0;ID=YMR271C;Name=URA10
IV	S-MART	transcript	1399706	1401214	.	-	.	seqedit=false;p_id=P4515;gene_id=YDR470C;tss_id=TSS2537;nbOverlaps=0;ID=YDR470C;Name=UGO1
XIII	S-MART	transcript	809623	810777	.	-	.	seqedit=false;p_id=P3504;gene_id=YMR272C;tss_id=TSS705;nbOverlaps=0;ID=YMR272C;Name=SCS7
XIII	S-MART	transcript	810466	810579	.	+	.	seqedit=false;p_id=P3523;gene_id=YMR272W-A;tss_id=TSS2648;nbOverlaps=0;ID=YMR272W-A;Name=YMR272W-A
VIII	S-MART	transcript	59123	62563	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:1321:18393#0--HWUSI-EAS1656_0009_FC:3:14:15366:4313#0--HWUSI-EAS1656_0009;p_id=P830;gene_id=YHL023C;tss_id=TSS1518;nbOverlaps=122;ID=YHL023C;Name=NPR3
VIII	S-MART	transcript	56649	58790	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:2730:20632#0--HWUSI-EAS1656_0009_FC:3:31:18609:9791#0--HWUSI-EAS1656_0009_;p_id=P1642;gene_id=YHL024W;tss_id=TSS4873;nbOverlaps=49;ID=YHL024W;Name=RIM4
VIII	S-MART	transcript	54851	55849	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:18:12252:4011#0--HWUSI-EAS1656_0009_FC:3:58:11796:20364#0--HWUSI-EAS1656_000;p_id=P4369;gene_id=YHL025W;tss_id=TSS6524;nbOverlaps=147;ID=YHL025W;Name=SNF6
IV	S-MART	transcript	1401770	1402564	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:44:6428:7863#0--HWUSI-EAS1656_0009_FC:3:46:3231:6181#0--HWUSI-EAS1656_0009_F;p_id=P5126;gene_id=YDR471W;tss_id=TSS6229;nbOverlaps=3;ID=YDR471W;Name=RPL27B
IV	S-MART	exon	1401770	1401800	.	+	.	ID=YDR471W-exon1;Name=RPL27B-exon1;Parent=YDR471W
IV	S-MART	exon	1402185	1402564	.	+	.	ID=YDR471W-exon2;Name=RPL27B-exon2;Parent=YDR471W
VIII	S-MART	transcript	51111	52988	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:6471:4571#0--HWUSI-EAS1656_0009_FC:3:80:8360:15271#0--HWUSI-EAS1656_0009;p_id=P2916;gene_id=YHL027W;tss_id=TSS916;nbOverlaps=291;ID=YHL027W;Name=RIM101
VIII	S-MART	transcript	53219	54166	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:17827:9720#0--HWUSI-EAS1656_0009_FC:3:76:17420:14660#0--HWUSI-EAS1656_000;p_id=P6318;gene_id=YHL026C;tss_id=TSS4951;nbOverlaps=44;ID=YHL026C;Name=YHL026C
XI	S-MART	transcript	195288	196028	.	-	.	seqedit=false;p_id=P4527;gene_id=YKL130C;tss_id=TSS6518;nbOverlaps=0;ID=YKL130C;Name=SHE2
XI	S-MART	transcript	193574	194866	.	-	.	seqedit=false;p_id=P1788;gene_id=YKL132C;tss_id=TSS5925;nbOverlaps=0;ID=YKL132C;Name=RMA1
XIV	S-MART	transcript	585587	585926	.	+	.	seqedit=false;gene_id=NME1;tss_id=TSS3913;nbOverlaps=0;ID=NME1;Name=NME1
VIII	S-MART	transcript	40084	45690	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:16904:20740#0--HWUSI-EAS1656_0009_FC:3:105:4915:7973#0--HWUSI-EAS1656_000;p_id=P5045;gene_id=YHL030W;tss_id=TSS5875;nbOverlaps=564;ID=YHL030W;Name=ECM29
XI	S-MART	transcript	189124	191442	.	-	.	seqedit=false;p_id=P733;gene_id=YKL134C;tss_id=TSS2310;nbOverlaps=0;ID=YKL134C;Name=OCT1
XIII	S-MART	transcript	522329	523345	.	-	.	seqedit=false;p_id=P1349;gene_id=YMR127C;tss_id=TSS301;nbOverlaps=0;ID=YMR127C;Name=SAS2
XIII	S-MART	transcript	523696	527499	.	+	.	seqedit=false;p_id=P4576;gene_id=YMR128W;tss_id=TSS3481;nbOverlaps=0;ID=YMR128W;Name=ECM16
XIII	S-MART	transcript	527804	531817	.	+	.	seqedit=false;p_id=P5825;gene_id=YMR129W;tss_id=TSS7026;nbOverlaps=0;ID=YMR129W;Name=POM152
XIII	S-MART	transcript	533163	534698	.	-	.	seqedit=false;p_id=P1314;gene_id=YMR131C;tss_id=TSS2050;nbOverlaps=0;ID=YMR131C;Name=RRB1
IX	S-MART	transcript	395999	396939	.	+	.	seqedit=false;gene_id=PWR1;tss_id=TSS3890;nbOverlaps=0;ID=PWR1;Name=PWR1
XIII	S-MART	transcript	532119	533027	.	+	.	seqedit=false;p_id=P4055;gene_id=YMR130W;tss_id=TSS6985;nbOverlaps=0;ID=YMR130W;Name=YMR130W
VIII	S-MART	transcript	27978	32756	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:2622:18367#0--HWUSI-EAS1656_0009_FC:3:60:12331:14192#0--HWUSI-EAS1656_00;p_id=P4494;gene_id=YHL035C;tss_id=TSS2212;nbOverlaps=214;ID=YHL035C;Name=VMR1
XIII	S-MART	transcript	536207	537609	.	+	.	seqedit=false;p_id=P4606;gene_id=YMR133W;tss_id=TSS4209;nbOverlaps=0;ID=YMR133W;Name=REC114
XIII	S-MART	exon	536207	537448	.	+	.	ID=YMR133W-exon1;Name=REC114-exon1;Parent=YMR133W
XIII	S-MART	exon	537565	537609	.	+	.	ID=YMR133W-exon2;Name=REC114-exon2;Parent=YMR133W
XI	S-MART	transcript	180779	182425	.	+	.	seqedit=false;p_id=P1071;gene_id=YKL140W;tss_id=TSS463;nbOverlaps=0;ID=YKL140W;Name=TGL1
VIII	S-MART	transcript	25778	26179	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:71:13391:7829#0--HWUSI-EAS1656_0009_FC:3:39:3121:11953#0--HWUSI-EAS1656_0009;p_id=P4298;gene_id=YHL037C;tss_id=TSS4499;nbOverlaps=3;ID=YHL037C;Name=YHL037C
XIII	S-MART	transcript	538689	540056	.	-	.	seqedit=false;p_id=P4337;gene_id=YMR135C;tss_id=TSS2007;nbOverlaps=0;ID=YMR135C;Name=GID8
Mito	S-MART	transcript	3952	4338	.	+	.	seqedit=false;p_id=P3142;gene_id=Q0010;tss_id=TSS4876;nbOverlaps=0;ID=Q0010;Name=Q0010
XIII	S-MART	transcript	537838	538551	.	+	.	seqedit=false;p_id=P4099;gene_id=YMR134W;tss_id=TSS4030;nbOverlaps=0;ID=YMR134W;Name=YMR134W
XIII	S-MART	transcript	539911	540444	.	+	.	seqedit=false;p_id=P2259;gene_id=YMR135W-A;tss_id=TSS3398;nbOverlaps=0;ID=YMR135W-A;Name=YMR135W-A
IV	S-MART	transcript	1403322	1404173	.	+	.	seqedit=false;p_id=P152;gene_id=YDR472W;tss_id=TSS6305;nbOverlaps=0;ID=YDR472W;Name=TRS31
XIII	S-MART	transcript	541199	542881	.	+	.	seqedit=false;p_id=P5658;gene_id=YMR136W;tss_id=TSS1015;nbOverlaps=0;ID=YMR136W;Name=GAT2
XIII	S-MART	transcript	542978	544963	.	-	.	seqedit=false;p_id=P945;gene_id=YMR137C;tss_id=TSS137;nbOverlaps=0;ID=YMR137C;Name=PSO2
VIII	S-MART	transcript	11923	12285	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:9:6232:2282#0--HWUSI-EAS1656_0009_FC:3:90:14589:7302#0--HWUSI-EAS1656_0009_F;p_id=P5234;gene_id=YHL046C;tss_id=TSS267;nbOverlaps=3;ID=YHL046C;Name=PAU13
XIII	S-MART	transcript	546125	547237	.	+	.	seqedit=false;p_id=P5228;gene_id=YMR139W;tss_id=TSS5847;nbOverlaps=0;ID=YMR139W;Name=RIM11
Mito	S-MART	transcript	4254	4415	.	+	.	seqedit=false;p_id=P4916;gene_id=Q0017;tss_id=TSS3124;nbOverlaps=0;ID=Q0017;Name=Q0017
XIII	S-MART	transcript	547714	549183	.	+	.	seqedit=false;p_id=P2270;gene_id=YMR140W;tss_id=TSS689;nbOverlaps=0;ID=YMR140W;Name=SIP5
VIII	S-MART	transcript	9981	10307	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:14413:5378#0--HWUSI-EAS1656_0009_FC:3:22:9680:11399#0--HWUSI-EAS1656_0009;p_id=P4253;gene_id=YHL046W-A;tss_id=TSS3543;nbOverlaps=96;ID=YHL046W-A;Name=YHL046W-A
IV	S-MART	transcript	1404445	1405854	.	-	.	seqedit=false;p_id=P3447;gene_id=YDR473C;tss_id=TSS133;nbOverlaps=0;ID=YDR473C;Name=PRP3
VIII	S-MART	transcript	8351	10213	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:17471:10469#0--HWUSI-EAS1656_0009_FC:3:80:15631:10494#0--HWUSI-EAS1656_0;p_id=P2979;gene_id=YHL047C;tss_id=TSS2851;nbOverlaps=510;ID=YHL047C;Name=ARN2
VIII	S-MART	transcript	5663	5797	.	-	.	seqedit=false;p_id=P1753;gene_id=YHL048C-A;tss_id=TSS4856;nbOverlaps=0;ID=YHL048C-A;Name=YHL048C-A
VIII	S-MART	transcript	6401	7546	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:41:12057:13337#0--HWUSI-EAS1656_0009_FC:3:49:17080:15995#0--HWUSI-EAS1656_00;p_id=P2686;gene_id=YHL048W;tss_id=TSS5389;nbOverlaps=111;ID=YHL048W;Name=COS8
XI	S-MART	transcript	161601	162335	.	+	.	seqedit=false;p_id=P1100;gene_id=YKL154W;tss_id=TSS6824;nbOverlaps=0;ID=YKL154W;Name=SRP102
XIV	S-MART	transcript	24048	27173	.	+	.	seqedit=false;p_id=P4549;gene_id=YNL327W;tss_id=TSS305;nbOverlaps=0;ID=YNL327W;Name=EGT2
XI	S-MART	transcript	163600	164109	.	+	.	seqedit=false;p_id=P543;gene_id=YKL153W;tss_id=TSS6779;nbOverlaps=0;ID=YKL153W;Name=YKL153W
VIII	S-MART	transcript	445	3311	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:11690:21395#0--HWUSI-EAS1656_0009_FC:3:60:5781:11050#0--HWUSI-EAS1656_000;p_id=P5270;gene_id=YHL050C;tss_id=TSS1369;nbOverlaps=266;ID=YHL050C;Name=YHL050C
VIII	S-MART	exon	445	1897	.	-	.	ID=YHL050C-exon1;Name=YHL050C-exon1;Parent=YHL050C
VIII	S-MART	exon	2671	3311	.	-	.	ID=YHL050C-exon2;Name=YHL050C-exon2;Parent=YHL050C
IV	S-MART	transcript	1407464	1410094	.	-	.	seqedit=false;p_id=P3850;gene_id=YDR475C;tss_id=TSS4868;nbOverlaps=0;ID=YDR475C;Name=JIP4
XI	S-MART	transcript	158975	159091	.	-	.	seqedit=false;p_id=P5778;gene_id=YKL156C-A;tss_id=TSS3115;nbOverlaps=0;ID=YKL156C-A;Name=YKL156C-A
XIII	S-MART	transcript	554793	556475	.	-	.	seqedit=false;p_id=P3280;gene_id=YMR145C;tss_id=TSS5285;nbOverlaps=0;ID=YMR145C;Name=NDE1
VIII	S-MART	transcript	106055	107368	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:77:8702:14673#0--HWUSI-EAS1656_0009_FC:3:31:2380:19218#0--HWUSI-EAS1656_0009;p_id=P2510;gene_id=YHR001W;tss_id=TSS4135;nbOverlaps=451;ID=YHR001W;Name=OSH7
VIII	S-MART	transcript	107826	108122	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:98:1970:3506#0--HWUSI-EAS1656_0009_FC:3:67:15385:13959#0--HWUSI-EAS1656_0009;p_id=P2790;gene_id=YHR001W-A;tss_id=TSS1743;nbOverlaps=25;ID=YHR001W-A;Name=QCR10
VIII	S-MART	exon	107826	107831	.	+	.	ID=YHR001W-A-exon1;Name=QCR10-exon1;Parent=YHR001W-A
VIII	S-MART	exon	107895	108122	.	+	.	ID=YHR001W-A-exon2;Name=QCR10-exon2;Parent=YHR001W-A
XIV	S-MART	transcript	22834	23274	.	-	.	seqedit=false;p_id=P4343;gene_id=YNL328C;tss_id=TSS1766;nbOverlaps=0;ID=YNL328C;Name=MDJ2
XI	S-MART	transcript	154991	158232	.	+	.	seqedit=false;p_id=P5153;gene_id=YKL157W;tss_id=TSS6614;nbOverlaps=0;ID=YKL157W;Name=APE2
XI	S-MART	exon	154991	155271	.	+	.	ID=YKL157W-exon1;Name=APE2-exon1;Parent=YKL157W
XI	S-MART	exon	155655	158232	.	+	.	ID=YKL157W-exon2;Name=APE2-exon2;Parent=YKL157W
XIII	S-MART	transcript	559199	559870	.	+	.	seqedit=false;p_id=P4471;gene_id=YMR147W;tss_id=TSS712;nbOverlaps=0;ID=YMR147W;Name=YMR147W
IV	S-MART	transcript	1412373	1414274	.	+	.	seqedit=false;p_id=P1129;gene_id=YDR477W;tss_id=TSS2410;nbOverlaps=0;ID=YDR477W;Name=SNF1
XIII	S-MART	transcript	560996	561856	.	+	.	seqedit=false;p_id=P5280;gene_id=YMR149W;tss_id=TSS6608;nbOverlaps=0;ID=YMR149W;Name=SWP1
VIII	S-MART	transcript	111754	113094	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:3013:3288#0--HWUSI-EAS1656_0009_FC:3:20:7171:7383#0--HWUSI-EAS1656_0009_F;p_id=P4935;gene_id=YHR004C;tss_id=TSS2966;nbOverlaps=126;ID=YHR004C;Name=NEM1
VIII	S-MART	transcript	110028	111317	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:4352:17120#0--HWUSI-EAS1656_0009_FC:3:44:11987:11913#0--HWUSI-EAS1656_000;p_id=P3735;gene_id=YHR003C;tss_id=TSS4435;nbOverlaps=236;ID=YHR003C;Name=YHR003C
VIII	S-MART	transcript	113499	114917	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:36:5245:12130#0--HWUSI-EAS1656_0009_FC:3:40:13213:2786#0--HWUSI-EAS1656_0009;p_id=P4528;gene_id=YHR005C;tss_id=TSS2204;nbOverlaps=256;ID=YHR005C;Name=GPA1
XIV	S-MART	transcript	19541	22633	.	-	.	seqedit=false;p_id=P2965;gene_id=YNL329C;tss_id=TSS2792;nbOverlaps=0;ID=YNL329C;Name=PEX6
XI	S-MART	transcript	145922	146074	.	-	.	seqedit=false;p_id=P3546;gene_id=YKL162C-A;tss_id=TSS4906;nbOverlaps=0;ID=YKL162C-A;Name=YKL162C-A
XI	S-MART	transcript	147630	148838	.	-	.	seqedit=false;p_id=P2544;gene_id=YKL162C;tss_id=TSS6478;nbOverlaps=0;ID=YKL162C;Name=YKL162C
IV	S-MART	transcript	1410453	1411127	.	-	.	seqedit=false;p_id=P5966;gene_id=YDR476C;tss_id=TSS1053;nbOverlaps=0;ID=YDR476C;Name=YDR476C
XI	S-MART	transcript	144401	145378	.	+	.	seqedit=false;p_id=P5215;gene_id=YKL163W;tss_id=TSS3724;nbOverlaps=0;ID=YKL163W;Name=PIR3
VIII	S-MART	transcript	122550	122765	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:16:3773:19122#0--HWUSI-EAS1656_0009_FC:3:7:14466:10454#0--HWUSI-EAS1656_0009;p_id=P4537;gene_id=YHR007C-A;tss_id=TSS4411;nbOverlaps=6;ID=YHR007C-A;Name=YHR007C-A
XIII	S-MART	transcript	568551	570194	.	+	.	seqedit=false;p_id=P3807;gene_id=YMR155W;tss_id=TSS4245;nbOverlaps=0;ID=YMR155W;Name=YMR155W
VIII	S-MART	transcript	124109	125680	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:5869:3254#0--HWUSI-EAS1656_0009_FC:3:90:15001:20343#0--HWUSI-EAS1656_0009;p_id=P4904;gene_id=YHR009C;tss_id=TSS5947;nbOverlaps=411;ID=YHR009C;Name=TDA3
XIV	S-MART	transcript	18001	19302	.	-	.	seqedit=false;p_id=P1975;gene_id=YNL330C;tss_id=TSS5082;nbOverlaps=0;ID=YNL330C;Name=RPD3
XIII	S-MART	transcript	573194	573331	.	-	.	seqedit=false;p_id=P5926;gene_id=YMR158C-A;tss_id=TSS6186;nbOverlaps=0;ID=YMR158C-A;Name=YMR158C-A
XI	S-MART	transcript	133721	134134	.	-	.	seqedit=false;p_id=P4718;gene_id=YKL167C;tss_id=TSS6718;nbOverlaps=0;ID=YKL167C;Name=MRP49
II	S-MART	transcript	796798	798522	.	-	.	seqedit=false;p_id=P209;gene_id=YBR296C;tss_id=TSS5366;nbOverlaps=0;ID=YBR296C;Name=PHO89
XIII	S-MART	transcript	574471	574791	.	+	.	seqedit=false;p_id=P1577;gene_id=YMR158W-B;tss_id=TSS1715;nbOverlaps=0;ID=YMR158W-B;Name=YMR158W-B
VIII	S-MART	transcript	127780	129120	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:14249:17606#0--HWUSI-EAS1656_0009_FC:3:69:16796:20297#0--HWUSI-EAS1656_00;p_id=P6226;gene_id=YHR011W;tss_id=TSS5816;nbOverlaps=17;ID=YHR011W;Name=DIA4
XI	S-MART	transcript	130685	131068	.	-	.	seqedit=false;p_id=P6321;gene_id=YKL169C;tss_id=TSS1085;nbOverlaps=0;ID=YKL169C;Name=YKL169C
XIII	S-MART	transcript	575066	577516	.	+	.	seqedit=false;p_id=P5347;gene_id=YMR160W;tss_id=TSS414;nbOverlaps=0;ID=YMR160W;Name=YMR160W
XIV	S-MART	transcript	16118	17248	.	-	.	seqedit=false;p_id=P887;gene_id=YNL331C;tss_id=TSS6942;nbOverlaps=0;ID=YNL331C;Name=AAD14
XIII	S-MART	transcript	578951	583921	.	-	.	seqedit=false;p_id=P3482;gene_id=YMR162C;tss_id=TSS4943;nbOverlaps=0;ID=YMR162C;Name=DNF3
XIII	S-MART	transcript	584271	586388	.	-	.	seqedit=false;p_id=P6166;gene_id=YMR163C;tss_id=TSS499;nbOverlaps=0;ID=YMR163C;Name=INP2
II	S-MART	transcript	800123	800242	.	-	.	seqedit=false;p_id=P5717;gene_id=YBR296C-A;tss_id=TSS4814;nbOverlaps=0;ID=YBR296C-A;Name=YBR296C-A
XIII	S-MART	transcript	587274	589550	.	-	.	seqedit=false;p_id=P1836;gene_id=YMR164C;tss_id=TSS174;nbOverlaps=0;ID=YMR164C;Name=MSS11
XIII	S-MART	transcript	590040	592628	.	-	.	seqedit=false;p_id=P3599;gene_id=YMR165C;tss_id=TSS2588;nbOverlaps=0;ID=YMR165C;Name=PAH1
VIII	S-MART	transcript	136881	138455	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:3534:21303#0--HWUSI-EAS1656_0009_FC:3:108:9411:5228#0--HWUSI-EAS1656_000;p_id=P2708;gene_id=YHR016C;tss_id=TSS610;nbOverlaps=75;ID=YHR016C;Name=YSC84
VIII	S-MART	exon	136881	138240	.	-	.	ID=YHR016C-exon1;Name=YSC84-exon1;Parent=YHR016C
VIII	S-MART	exon	138409	138455	.	-	.	ID=YHR016C-exon2;Name=YSC84-exon2;Parent=YHR016C
XI	S-MART	transcript	113215	114627	.	-	.	seqedit=false;p_id=P3196;gene_id=YKL178C;tss_id=TSS5665;nbOverlaps=0;ID=YKL178C;Name=STE3
XIV	S-MART	transcript	14832	15854	.	+	.	seqedit=false;p_id=P5703;gene_id=YNL332W;tss_id=TSS473;nbOverlaps=0;ID=YNL332W;Name=THI12
XI	S-MART	transcript	114356	114694	.	+	.	seqedit=false;p_id=P467;gene_id=YKL177W;tss_id=TSS5213;nbOverlaps=0;ID=YKL177W;Name=YKL177W
VIII	S-MART	transcript	138694	139851	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:1774:9591#0--HWUSI-EAS1656_0009_FC:3:86:10724:20389#0--HWUSI-EAS1656_0009_;p_id=P2917;gene_id=YHR017W;tss_id=TSS5309;nbOverlaps=150;ID=YHR017W;Name=YSC83
II	S-MART	transcript	800523	801929	.	+	.	seqedit=false;p_id=P837;gene_id=YBR297W;tss_id=TSS1817;nbOverlaps=0;ID=YBR297W;Name=MAL33
XIV	S-MART	transcript	517994	518845	.	-	.	seqedit=false;p_id=P3363;gene_id=YNL055C;tss_id=TSS2346;nbOverlaps=0;ID=YNL055C;Name=POR1
XIV	S-MART	transcript	13267	14163	.	+	.	seqedit=false;p_id=P5146;gene_id=YNL333W;tss_id=TSS2278;nbOverlaps=0;ID=YNL333W;Name=SNZ2
II	S-MART	transcript	802631	804475	.	-	.	seqedit=false;p_id=P2688;gene_id=YBR298C;tss_id=TSS6102;nbOverlaps=0;ID=YBR298C;Name=MAL31
XIV	S-MART	transcript	12208	12876	.	-	.	seqedit=false;p_id=P2572;gene_id=YNL334C;tss_id=TSS901;nbOverlaps=0;ID=YNL334C;Name=SNO2
II	S-MART	transcript	805035	805256	.	-	.	seqedit=false;p_id=P6296;gene_id=YBR298C-A;tss_id=TSS2121;nbOverlaps=0;ID=YBR298C-A;Name=YBR298C-A
XIV	S-MART	transcript	11452	12129	.	+	.	seqedit=false;p_id=P322;gene_id=YNL335W;tss_id=TSS6966;nbOverlaps=0;ID=YNL335W;Name=DDI3
II	S-MART	transcript	805351	807105	.	+	.	seqedit=false;p_id=P948;gene_id=YBR299W;tss_id=TSS3501;nbOverlaps=0;ID=YBR299W;Name=MAL32
XIV	S-MART	transcript	8330	9475	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:6411:16379#0--HWUSI-EAS1656_0009_FC:3:79:10015:12707#0--HWUSI-EAS1656_000;p_id=P4159;gene_id=YNL336W;tss_id=TSS4801;nbOverlaps=3;ID=YNL336W;Name=COS1
II	S-MART	transcript	809057	809419	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0;p_id=P2829;gene_id=YBR301W;tss_id=TSS5619;nbOverlaps=1;ID=YBR301W;Name=PAU24
Mito	S-MART	transcript	13818	16322	.	+	.	seqedit=false;p_id=P1216;gene_id=Q0050;tss_id=TSS6555;nbOverlaps=0;ID=Q0050;Name=AI1
II	S-MART	transcript	808600	809097	.	-	.	seqedit=false;p_id=P4605;gene_id=YBR300C;tss_id=TSS5770;nbOverlaps=0;ID=YBR300C;Name=YBR300C
XII	S-MART	transcript	735212	737548	.	-	.	seqedit=false;p_id=P5871;gene_id=YLR304C;tss_id=TSS4580;nbOverlaps=0;ID=YLR304C;Name=ACO1
XIV	S-MART	transcript	517249	517842	.	+	.	seqedit=false;p_id=P4420;gene_id=YNL056W;tss_id=TSS6382;nbOverlaps=0;ID=YNL056W;Name=OCA2
Mito	S-MART	transcript	13818	18830	.	+	.	seqedit=false;p_id=P2399;gene_id=Q0055;tss_id=TSS6555;nbOverlaps=0;ID=Q0055;Name=AI2
Mito	S-MART	exon	13818	13986	.	+	.	ID=Q0055-exon1;Name=AI2-exon1;Parent=Q0055
Mito	S-MART	exon	16435	18830	.	+	.	ID=Q0055-exon2;Name=AI2-exon2;Parent=Q0055
II	S-MART	transcript	810340	811479	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:6411:16379#0--HWUSI-EAS1656_0009_FC:3:79:10015:12707#0--HWUSI-EAS1656_000;p_id=P6501;gene_id=YBR302C;tss_id=TSS3784;nbOverlaps=3;ID=YBR302C;Name=COS2
XVI	S-MART	transcript	199495	202536	.	-	.	seqedit=false;p_id=P4738;gene_id=YPL183C;tss_id=TSS6959;nbOverlaps=0;ID=YPL183C;Name=RTT10
XIV	S-MART	transcript	6561	6719	.	+	.	seqedit=false;p_id=P1424;gene_id=YNL338W;tss_id=TSS3267;nbOverlaps=0;ID=YNL338W;Name=YNL338W
III	S-MART	transcript	111916	112482	.	+	.	seqedit=false;p_id=P1205;gene_id=YCL001W;tss_id=TSS5119;nbOverlaps=0;ID=YCL001W;Name=RER1
XVI	S-MART	transcript	189154	190983	.	+	.	seqedit=false;p_id=P3674;gene_id=YPL189W;tss_id=TSS5649;nbOverlaps=0;ID=YPL189W;Name=GUP2
III	S-MART	transcript	113080	113541	.	+	.	seqedit=false;p_id=P1617;gene_id=YCL001W-A;tss_id=TSS4682;nbOverlaps=0;ID=YCL001W-A;Name=YCL001W-A
Mito	S-MART	transcript	13818	19996	.	+	.	seqedit=false;p_id=P3013;gene_id=Q0060;tss_id=TSS6555;nbOverlaps=0;ID=Q0060;Name=AI3
Mito	S-MART	exon	13818	13986	.	+	.	ID=Q0060-exon1;Name=AI3-exon1;Parent=Q0060
Mito	S-MART	exon	16435	16470	.	+	.	ID=Q0060-exon2;Name=AI3-exon2;Parent=Q0060
Mito	S-MART	exon	18954	19996	.	+	.	ID=Q0060-exon3;Name=AI3-exon3;Parent=Q0060
III	S-MART	transcript	113770	114024	.	+	.	seqedit=false;p_id=P3046;gene_id=YCL001W-B;tss_id=TSS2718;nbOverlaps=0;ID=YCL001W-B;Name=YCL001W-B
XIV	S-MART	transcript	1517	2092	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P3520;gene_id=YNL339W-A;tss_id=TSS6506;nbOverlaps=32;ID=YNL339W-A;Name=YNL339W-A
XIII	S-MART	transcript	611314	611508	.	+	.	seqedit=false;p_id=P1377;gene_id=YMR175W-A;tss_id=TSS3011;nbOverlaps=0;ID=YMR175W-A;Name=YMR175W-A
IV	S-MART	transcript	1019368	1020420	.	+	.	seqedit=false;p_id=P5773;gene_id=YDR279W;tss_id=TSS3148;nbOverlaps=0;ID=YDR279W;Name=RNH202
XII	S-MART	transcript	738161	743863	.	-	.	seqedit=false;p_id=P1765;gene_id=YLR305C;tss_id=TSS926;nbOverlaps=0;ID=YLR305C;Name=STT4
XIV	S-MART	transcript	734	1216	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P1860;gene_id=YNL339W-B;tss_id=TSS1308;nbOverlaps=74;ID=YNL339W-B;Name=YNL339W-B
Mito	S-MART	transcript	61022	61729	.	+	.	seqedit=false;p_id=P1196;gene_id=Q0160;tss_id=TSS1793;nbOverlaps=0;ID=Q0160;Name=SCEI
Mito	S-MART	transcript	65770	66174	.	+	.	seqedit=false;p_id=P4654;gene_id=Q0182;tss_id=TSS6448;nbOverlaps=0;ID=Q0182;Name=Q0182
Mito	S-MART	transcript	73758	74513	.	+	.	seqedit=false;p_id=P1155;gene_id=Q0250;tss_id=TSS642;nbOverlaps=0;ID=Q0250;Name=COX2
Mito	S-MART	transcript	74495	75984	.	+	.	seqedit=false;p_id=P1340;gene_id=Q0255;tss_id=TSS6612;nbOverlaps=0;ID=Q0255;Name=Q0255
Mito	S-MART	exon	74495	75622	.	+	.	ID=Q0255-exon1;Name=Q0255-exon1;Parent=Q0255
Mito	S-MART	exon	75663	75872	.	+	.	ID=Q0255-exon2;Name=Q0255-exon2;Parent=Q0255
Mito	S-MART	exon	75904	75984	.	+	.	ID=Q0255-exon3;Name=Q0255-exon3;Parent=Q0255
XIV	S-MART	transcript	629622	631061	.	-	.	seqedit=false;p_id=P2434;gene_id=YNR001C;tss_id=TSS2192;nbOverlaps=0;ID=YNR001C;Name=CIT1
VI	S-MART	transcript	109810	110184	.	+	.	seqedit=false;p_id=P1008;gene_id=YFL012W-A;tss_id=TSS6865;nbOverlaps=0;ID=YFL012W-A;Name=YFL012W-A
Mito	S-MART	transcript	79213	80022	.	+	.	seqedit=false;p_id=P3938;gene_id=Q0275;tss_id=TSS1212;nbOverlaps=0;ID=Q0275;Name=COX3
Mito	S-MART	transcript	85554	85709	.	+	.	seqedit=false;p_id=P3994;gene_id=Q0297;tss_id=TSS821;nbOverlaps=0;ID=Q0297;Name=Q0297
XII	S-MART	transcript	459676	459796	.	+	.	seqedit=false;gene_id=RDN5-1;tss_id=TSS6138;nbOverlaps=0;ID=RDN5-1;Name=RDN5-1
I	S-MART	transcript	114919	118314	.	+	.	seqedit=false;p_id=P4917;gene_id=YAL019W;tss_id=TSS549;nbOverlaps=0;ID=YAL019W;Name=FUN30
XII	S-MART	transcript	455933	457732	.	-	.	seqedit=false;gene_id=RDN18-1;tss_id=TSS5512;nbOverlaps=0;ID=RDN18-1;Name=RDN18-1
Mito	S-MART	transcript	13818	21935	.	+	.	seqedit=false;p_id=P6349;gene_id=Q0065;tss_id=TSS6555;nbOverlaps=0;ID=Q0065;Name=AI4
Mito	S-MART	exon	13818	13986	.	+	.	ID=Q0065-exon1;Name=AI4-exon1;Parent=Q0065
Mito	S-MART	exon	16435	16470	.	+	.	ID=Q0065-exon2;Name=AI4-exon2;Parent=Q0065
Mito	S-MART	exon	18954	18991	.	+	.	ID=Q0065-exon3;Name=AI4-exon3;Parent=Q0065
Mito	S-MART	exon	20508	21935	.	+	.	ID=Q0065-exon4;Name=AI4-exon4;Parent=Q0065
XII	S-MART	transcript	465070	466869	.	-	.	seqedit=false;gene_id=RDN18-2;tss_id=TSS4670;nbOverlaps=0;ID=RDN18-2;Name=RDN18-2
XII	S-MART	transcript	451786	455181	.	-	.	seqedit=false;gene_id=RDN25-1;tss_id=TSS4939;nbOverlaps=0;ID=RDN25-1;Name=RDN25-1
VI	S-MART	transcript	110647	111093	.	+	.	seqedit=false;p_id=P4098;gene_id=YFL012W;tss_id=TSS4969;nbOverlaps=0;ID=YFL012W;Name=YFL012W
XVI	S-MART	transcript	561504	563768	.	-	.	seqedit=false;p_id=P1693;gene_id=YPR003C;tss_id=TSS2164;nbOverlaps=0;ID=YPR003C;Name=YPR003C
XII	S-MART	transcript	460923	464318	.	-	.	seqedit=false;gene_id=RDN25-2;tss_id=TSS3515;nbOverlaps=0;ID=RDN25-2;Name=RDN25-2
XII	S-MART	transcript	451786	457732	.	-	.	seqedit=false;gene_id=RDN37-1;tss_id=TSS5512;nbOverlaps=0;ID=RDN37-1;Name=RDN37-1
XII	S-MART	exon	451786	455181	.	-	.	ID=RDN37-1-exon1;Name=RDN37-1-exon1;Parent=RDN37-1
XII	S-MART	exon	455414	455571	.	-	.	ID=RDN37-1-exon2;Name=RDN37-1-exon2;Parent=RDN37-1
XII	S-MART	exon	455933	457732	.	-	.	ID=RDN37-1-exon3;Name=RDN37-1-exon3;Parent=RDN37-1
XIV	S-MART	transcript	633008	633856	.	-	.	seqedit=false;p_id=P2439;gene_id=YNR002C;tss_id=TSS6644;nbOverlaps=0;ID=YNR002C;Name=ATO2
XII	S-MART	transcript	460923	466869	.	-	.	seqedit=false;gene_id=RDN37-2;tss_id=TSS4670;nbOverlaps=0;ID=RDN37-2;Name=RDN37-2
XII	S-MART	exon	460923	464318	.	-	.	ID=RDN37-2-exon1;Name=RDN37-2-exon1;Parent=RDN37-2
XII	S-MART	exon	464551	464708	.	-	.	ID=RDN37-2-exon2;Name=RDN37-2-exon2;Parent=RDN37-2
XII	S-MART	exon	465070	466869	.	-	.	ID=RDN37-2-exon3;Name=RDN37-2-exon3;Parent=RDN37-2
XIV	S-MART	transcript	245617	246216	.	+	.	seqedit=false;p_id=P2611;gene_id=YNL214W;tss_id=TSS3861;nbOverlaps=0;ID=YNL214W;Name=PEX17
XII	S-MART	transcript	468813	468931	.	+	.	seqedit=false;gene_id=RDN5-2;tss_id=TSS2160;nbOverlaps=0;ID=RDN5-2;Name=RDN5-2
XIV	S-MART	transcript	634344	635297	.	-	.	seqedit=false;p_id=P1181;gene_id=YNR003C;tss_id=TSS4171;nbOverlaps=0;ID=YNR003C;Name=RPC34
XII	S-MART	transcript	472465	472583	.	+	.	seqedit=false;gene_id=RDN5-3;tss_id=TSS1536;nbOverlaps=0;ID=RDN5-3;Name=RDN5-3
XII	S-MART	transcript	482045	482163	.	+	.	seqedit=false;gene_id=RDN5-4;tss_id=TSS2127;nbOverlaps=0;ID=RDN5-4;Name=RDN5-4
XIV	S-MART	transcript	244468	245430	.	+	.	seqedit=false;p_id=P3460;gene_id=YNL215W;tss_id=TSS2777;nbOverlaps=0;ID=YNL215W;Name=IES2
XII	S-MART	transcript	485697	485815	.	+	.	seqedit=false;gene_id=RDN5-5;tss_id=TSS3702;nbOverlaps=0;ID=RDN5-5;Name=RDN5-5
XII	S-MART	transcript	489349	489469	.	+	.	seqedit=false;gene_id=RDN5-6;tss_id=TSS4907;nbOverlaps=0;ID=RDN5-6;Name=RDN5-6
XIII	S-MART	transcript	667288	667456	.	-	.	seqedit=false;gene_id=RNA170;tss_id=TSS5064;nbOverlaps=0;ID=RNA170;Name=RNA170
XII	S-MART	transcript	455414	455571	.	-	.	seqedit=false;gene_id=RDN58-1;tss_id=TSS2554;nbOverlaps=0;ID=RDN58-1;Name=RDN58-1
XIV	S-MART	transcript	634420	634518	.	+	.	seqedit=false;p_id=P4733;gene_id=YNR003W-A;tss_id=TSS743;nbOverlaps=0;ID=YNR003W-A;Name=YNR003W-A
XII	S-MART	transcript	464551	464708	.	-	.	seqedit=false;gene_id=RDN58-2;tss_id=TSS2579;nbOverlaps=0;ID=RDN58-2;Name=RDN58-2
Mito	S-MART	transcript	85295	85777	.	+	.	seqedit=false;gene_id=RPM1;tss_id=TSS5520;nbOverlaps=0;ID=RPM1;Name=RPM1
XIV	S-MART	transcript	241689	244172	.	+	.	seqedit=false;p_id=P6130;gene_id=YNL216W;tss_id=TSS6681;nbOverlaps=0;ID=YNL216W;Name=RAP1
V	S-MART	transcript	117667	118035	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:1720:4900#0--HWUSI-EAS1656_0009_FC:3:66:12351:3310#0--HWUSI-EAS1656_0009_;gene_id=RPR1;tss_id=TSS5869;nbOverlaps=15303;ID=RPR1;Name=RPR1
VI	S-MART	transcript	131061	131503	.	-	.	seqedit=false;gene_id=RUF20;tss_id=TSS4536;nbOverlaps=0;ID=RUF20;Name=RUF20
XIV	S-MART	transcript	7165	7419	.	+	.	seqedit=false;p_id=P2304;gene_id=YNL337W;tss_id=TSS2084;nbOverlaps=0;ID=YNL337W;Name=YNL337W
VI	S-MART	transcript	57815	58521	.	-	.	seqedit=false;gene_id=RUF21;tss_id=TSS131;nbOverlaps=0;ID=RUF21;Name=RUF21
VI	S-MART	transcript	199299	199813	.	-	.	seqedit=false;gene_id=RUF22;tss_id=TSS6425;nbOverlaps=0;ID=RUF22;Name=RUF22
XIV	S-MART	transcript	635943	636383	.	+	.	seqedit=false;p_id=P2895;gene_id=YNR004W;tss_id=TSS2664;nbOverlaps=0;ID=YNR004W;Name=SWM2
VI	S-MART	transcript	221714	221967	.	+	.	seqedit=false;gene_id=RUF23;tss_id=TSS5471;nbOverlaps=0;ID=RUF23;Name=RUF23
VIII	S-MART	transcript	212409	213118	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:17145:5454#0--HWUSI-EAS1656_0009_FC:3:23:4849:6814#0--HWUSI-EAS1656_0009_;gene_id=RUF5-1;tss_id=TSS3102;nbOverlaps=1207;ID=RUF5-1;Name=RUF5-1
XIV	S-MART	transcript	238238	240001	.	+	.	seqedit=false;p_id=P2941;gene_id=YNL218W;tss_id=TSS1878;nbOverlaps=0;ID=YNL218W;Name=MGS1
VIII	S-MART	transcript	214407	215116	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:17145:5454#0--HWUSI-EAS1656_0009_FC:3:23:4849:6814#0--HWUSI-EAS1656_0009_;gene_id=RUF5-2;tss_id=TSS722;nbOverlaps=1207;ID=RUF5-2;Name=RUF5-2
V	S-MART	transcript	441987	442508	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:5435:10455#0--HWUSI-EAS1656_0009_FC:3:110:8698:16280#0--HWUSI-EAS1656_00;gene_id=SCR1;tss_id=TSS1763;nbOverlaps=126298;ID=SCR1;Name=SCR1
V	S-MART	transcript	322212	322762	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:5618:15965#0--HWUSI-EAS1656_0009_FC:3:95:10512:6996#0--HWUSI-EAS1656_0009;gene_id=SRG1;tss_id=TSS6576;nbOverlaps=194;ID=SRG1;Name=SRG1
II	S-MART	transcript	307587	308887	.	+	.	seqedit=false;gene_id=TLC1;tss_id=TSS1282;nbOverlaps=0;ID=TLC1;Name=TLC1
Mito	S-MART	transcript	13818	23167	.	+	.	seqedit=false;p_id=P5227;gene_id=Q0070;tss_id=TSS6555;nbOverlaps=0;ID=Q0070;Name=AI5_ALPHA
Mito	S-MART	exon	13818	13986	.	+	.	ID=Q0070-exon1;Name=AI5_ALPHA-exon1;Parent=Q0070
Mito	S-MART	exon	16435	16470	.	+	.	ID=Q0070-exon2;Name=AI5_ALPHA-exon2;Parent=Q0070
Mito	S-MART	exon	18954	18991	.	+	.	ID=Q0070-exon3;Name=AI5_ALPHA-exon3;Parent=Q0070
Mito	S-MART	exon	20508	20984	.	+	.	ID=Q0070-exon4;Name=AI5_ALPHA-exon4;Parent=Q0070
Mito	S-MART	exon	21995	23167	.	+	.	ID=Q0070-exon5;Name=AI5_ALPHA-exon5;Parent=Q0070
I	S-MART	transcript	147594	151166	.	-	.	seqedit=false;p_id=P3704;gene_id=YAL001C;tss_id=TSS1993;nbOverlaps=0;ID=YAL001C;Name=TFC3
I	S-MART	exon	147594	151006	.	-	.	ID=YAL001C-exon1;Name=TFC3-exon1;Parent=YAL001C
I	S-MART	exon	151097	151166	.	-	.	ID=YAL001C-exon2;Name=TFC3-exon2;Parent=YAL001C
XIV	S-MART	transcript	519456	524706	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_0009_FC:3:11:18721:11407#0--HWUSI-EAS1656_00;gene_id=YNL054W-B;tss_id=TSS1187;nbOverlaps=58;ID=YNL054W-B;Name=YNL054W-B
XIV	S-MART	exon	519456	520760	.	+	.	ID=YNL054W-B-exon1;Name=YNL054W-B-exon1;Parent=YNL054W-B
XIV	S-MART	exon	520762	524706	.	+	.	ID=YNL054W-B-exon2;Name=YNL054W-B-exon2;Parent=YNL054W-B
I	S-MART	transcript	143707	147531	.	+	.	seqedit=false;p_id=P4117;gene_id=YAL002W;tss_id=TSS2564;nbOverlaps=0;ID=YAL002W;Name=VPS8
I	S-MART	transcript	142174	143160	.	+	.	seqedit=false;p_id=P1015;gene_id=YAL003W;tss_id=TSS2345;nbOverlaps=0;ID=YAL003W;Name=EFB1
I	S-MART	exon	142174	142253	.	+	.	ID=YAL003W-exon1;Name=EFB1-exon1;Parent=YAL003W
I	S-MART	exon	142620	143160	.	+	.	ID=YAL003W-exon2;Name=EFB1-exon2;Parent=YAL003W
XIV	S-MART	transcript	636931	637335	.	-	.	seqedit=false;p_id=P1416;gene_id=YNR005C;tss_id=TSS2869;nbOverlaps=0;ID=YNR005C;Name=YNR005C
I	S-MART	transcript	139503	141431	.	-	.	seqedit=false;p_id=P3301;gene_id=YAL005C;tss_id=TSS3447;nbOverlaps=0;ID=YAL005C;Name=SSA1
XIV	S-MART	transcript	235996	237663	.	-	.	seqedit=false;p_id=P2255;gene_id=YNL219C;tss_id=TSS2233;nbOverlaps=0;ID=YNL219C;Name=ALG9
I	S-MART	transcript	140760	141407	.	+	.	seqedit=false;p_id=P1720;gene_id=YAL004W;tss_id=TSS4719;nbOverlaps=0;ID=YAL004W;Name=YAL004W
I	S-MART	transcript	137698	138345	.	-	.	seqedit=false;p_id=P2807;gene_id=YAL007C;tss_id=TSS4314;nbOverlaps=0;ID=YAL007C;Name=ERP2
I	S-MART	transcript	136914	137510	.	+	.	seqedit=false;p_id=P3717;gene_id=YAL008W;tss_id=TSS5405;nbOverlaps=0;ID=YAL008W;Name=FUN14
I	S-MART	transcript	135854	136633	.	+	.	seqedit=false;p_id=P1462;gene_id=YAL009W;tss_id=TSS6472;nbOverlaps=0;ID=YAL009W;Name=SPO7
XIV	S-MART	transcript	639182	640114	.	-	.	seqedit=false;p_id=P4406;gene_id=YNR007C;tss_id=TSS3733;nbOverlaps=0;ID=YNR007C;Name=ATG3
I	S-MART	transcript	134184	135665	.	-	.	seqedit=false;p_id=P1374;gene_id=YAL010C;tss_id=TSS5017;nbOverlaps=0;ID=YAL010C;Name=MDM10
I	S-MART	transcript	132199	134076	.	+	.	seqedit=false;p_id=P4224;gene_id=YAL011W;tss_id=TSS2531;nbOverlaps=0;ID=YAL011W;Name=SWC3
VI	S-MART	transcript	103983	104462	.	-	.	seqedit=false;p_id=P5649;gene_id=YFL017C;tss_id=TSS3947;nbOverlaps=0;ID=YFL017C;Name=GNA1
I	S-MART	transcript	130799	131983	.	+	.	seqedit=false;p_id=P3844;gene_id=YAL012W;tss_id=TSS1178;nbOverlaps=0;ID=YAL012W;Name=CYS3
I	S-MART	transcript	129270	130487	.	+	.	seqedit=false;p_id=P2898;gene_id=YAL013W;tss_id=TSS987;nbOverlaps=0;ID=YAL013W;Name=DEP1
I	S-MART	transcript	128252	129019	.	-	.	seqedit=false;p_id=P6604;gene_id=YAL014C;tss_id=TSS6481;nbOverlaps=0;ID=YAL014C;Name=SYN8
I	S-MART	transcript	126903	128102	.	-	.	seqedit=false;p_id=P1737;gene_id=YAL015C;tss_id=TSS6968;nbOverlaps=0;ID=YAL015C;Name=NTG1
XIV	S-MART	transcript	640396	642381	.	+	.	seqedit=false;p_id=P1110;gene_id=YNR008W;tss_id=TSS4355;nbOverlaps=0;ID=YNR008W;Name=LRO1
I	S-MART	transcript	124755	125069	.	-	.	seqedit=false;p_id=P403;gene_id=YAL016C-A;tss_id=TSS163;nbOverlaps=0;ID=YAL016C-A;Name=YAL016C-A
I	S-MART	transcript	124307	124492	.	-	.	seqedit=false;p_id=P1118;gene_id=YAL016C-B;tss_id=TSS6558;nbOverlaps=0;ID=YAL016C-B;Name=YAL016C-B
XIV	S-MART	transcript	231068	233695	.	-	.	seqedit=false;p_id=P5655;gene_id=YNL221C;tss_id=TSS1857;nbOverlaps=0;ID=YNL221C;Name=POP1
I	S-MART	transcript	124879	126786	.	+	.	seqedit=false;p_id=P6339;gene_id=YAL016W;tss_id=TSS1796;nbOverlaps=0;ID=YAL016W;Name=TPD3
I	S-MART	transcript	120225	124295	.	+	.	seqedit=false;p_id=P6527;gene_id=YAL017W;tss_id=TSS5079;nbOverlaps=0;ID=YAL017W;Name=PSK1
V	S-MART	transcript	290242	290799	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:11243:10755#0--HWUSI-EAS1656_0009_FC:3:25:5836:4701#0--HWUSI-EAS1656_0009;p_id=P317;gene_id=YER066W;tss_id=TSS1589;nbOverlaps=40;ID=YER066W;Name=RRT13
XIV	S-MART	transcript	642690	643439	.	+	.	seqedit=false;p_id=P1429;gene_id=YNR009W;tss_id=TSS5593;nbOverlaps=0;ID=YNR009W;Name=NRM1
V	S-MART	transcript	292240	292563	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:1704:2239#0--HWUSI-EAS1656_0009_FC:3:54:10212:9280#0--HWUSI-EAS1656_0009_;p_id=P4848;gene_id=YER067C-A;tss_id=TSS6254;nbOverlaps=18;ID=YER067C-A;Name=YER067C-A
V	S-MART	transcript	292066	292551	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:1704:2239#0--HWUSI-EAS1656_0009_FC:3:54:10212:9280#0--HWUSI-EAS1656_0009_;p_id=P1225;gene_id=YER067W;tss_id=TSS3563;nbOverlaps=19;ID=YER067W;Name=RGI1
VI	S-MART	transcript	101628	103127	.	-	.	seqedit=false;p_id=P5543;gene_id=YFL018C;tss_id=TSS2534;nbOverlaps=0;ID=YFL018C;Name=LPD1
V	S-MART	transcript	295301	295732	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:7571:3760#0--HWUSI-EAS1656_0009_FC:3:92:13092:14272#0--HWUSI-EAS1656_0009;p_id=P1942;gene_id=YER068C-A;tss_id=TSS6705;nbOverlaps=93;ID=YER068C-A;Name=YER068C-A
V	S-MART	transcript	293050	294813	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:14430:14288#0--HWUSI-EAS1656_0009_FC:3:34:10194:7783#0--HWUSI-EAS1656_00;p_id=P3272;gene_id=YER068W;tss_id=TSS2170;nbOverlaps=79;ID=YER068W;Name=MOT2
V	S-MART	transcript	295410	298001	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:28:19353:6331#0--HWUSI-EAS1656_0009_FC:3:51:19447:5695#0--HWUSI-EAS1656_0009;p_id=P4861;gene_id=YER069W;tss_id=TSS3617;nbOverlaps=510;ID=YER069W;Name=ARG5,6
I	S-MART	transcript	114250	114819	.	+	.	seqedit=false;p_id=P3030;gene_id=YAL019W-A;tss_id=TSS2338;nbOverlaps=0;ID=YAL019W-A;Name=YAL019W-A
V	S-MART	transcript	298950	301616	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:10217:15731#0--HWUSI-EAS1656_0009_FC:3:4:8030:18488#0--HWUSI-EAS1656_0009;p_id=P4073;gene_id=YER070W;tss_id=TSS511;nbOverlaps=2872;ID=YER070W;Name=RNR1
XIV	S-MART	transcript	643744	644193	.	+	.	seqedit=false;p_id=P1096;gene_id=YNR010W;tss_id=TSS3141;nbOverlaps=0;ID=YNR010W;Name=CSE2
V	S-MART	transcript	301947	302327	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:18062:13656#0--HWUSI-EAS1656_0009_FC:3:103:4434:6297#0--HWUSI-EAS1656_000;p_id=P3353;gene_id=YER071C;tss_id=TSS5090;nbOverlaps=48;ID=YER071C;Name=TDA2
V	S-MART	transcript	302806	303195	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:7285:4783#0--HWUSI-EAS1656_0009_FC:3:70:12578:14359#0--HWUSI-EAS1656_0009;p_id=P736;gene_id=YER072W;tss_id=TSS6561;nbOverlaps=247;ID=YER072W;Name=VTC1
XIV	S-MART	transcript	512668	514935	.	-	.	seqedit=false;p_id=P2077;gene_id=YNL059C;tss_id=TSS2832;nbOverlaps=0;ID=YNL059C;Name=ARP5
V	S-MART	transcript	304030	305592	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:71:13081:6301#0--HWUSI-EAS1656_0009_FC:3:14:7498:18720#0--HWUSI-EAS1656_0009;p_id=P6425;gene_id=YER073W;tss_id=TSS478;nbOverlaps=687;ID=YER073W;Name=ALD5
V	S-MART	transcript	306323	307196	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:11416:7727#0--HWUSI-EAS1656_0009_FC:3:120:17094:1943#0--HWUSI-EAS1656_000;p_id=P4633;gene_id=YER074W;tss_id=TSS2775;nbOverlaps=2629;ID=YER074W;Name=RPS24A
V	S-MART	exon	306323	306325	.	+	.	ID=YER074W-exon1;Name=RPS24A-exon1;Parent=YER074W
V	S-MART	exon	306792	307196	.	+	.	ID=YER074W-exon2;Name=RPS24A-exon2;Parent=YER074W
VII	S-MART	transcript	466237	466398	.	-	.	seqedit=false;p_id=P2918;gene_id=YGL014C-A;tss_id=TSS3209;nbOverlaps=0;ID=YGL014C-A;Name=YGL014C-A
V	S-MART	transcript	307653	308123	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:1753:1156#0--HWUSI-EAS1656_0009_FC:3:59:15079:1069#0--HWUSI-EAS1656_0009_;p_id=P6435;gene_id=YER074W-A;tss_id=TSS3535;nbOverlaps=231;ID=YER074W-A;Name=YOS1
V	S-MART	exon	307653	307746	.	+	.	ID=YER074W-A-exon1;Name=YOS1-exon1;Parent=YER074W-A
V	S-MART	exon	307849	307956	.	+	.	ID=YER074W-A-exon2;Name=YOS1-exon2;Parent=YER074W-A
V	S-MART	exon	308068	308123	.	+	.	ID=YER074W-A-exon3;Name=YOS1-exon3;Parent=YER074W-A
VI	S-MART	transcript	100252	100605	.	-	.	seqedit=false;p_id=P4128;gene_id=YFL019C;tss_id=TSS1955;nbOverlaps=0;ID=YFL019C;Name=YFL019C
V	S-MART	transcript	308413	311199	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:17922:3956#0--HWUSI-EAS1656_0009_FC:3:104:3702:21314#0--HWUSI-EAS1656_000;p_id=P407;gene_id=YER075C;tss_id=TSS4429;nbOverlaps=88;ID=YER075C;Name=PTP3
V	S-MART	transcript	313390	313737	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:63:4008:5667#0--HWUSI-EAS1656_0009_FC:3:2:15205:1315#0--HWUSI-EAS1656_0009_F;p_id=P2889;gene_id=YER076W-A;tss_id=TSS2321;nbOverlaps=14;ID=YER076W-A;Name=YER076W-A
VII	S-MART	transcript	466141	468807	.	+	.	seqedit=false;p_id=P2200;gene_id=YGL014W;tss_id=TSS167;nbOverlaps=0;ID=YGL014W;Name=PUF4
V	S-MART	transcript	312590	313498	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:3294:10437#0--HWUSI-EAS1656_0009_FC:3:75:13779:5374#0--HWUSI-EAS1656_0009;p_id=P1239;gene_id=YER076C;tss_id=TSS3094;nbOverlaps=45;ID=YER076C;Name=YER076C
V	S-MART	transcript	316807	318342	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:66:13762:9781#0--HWUSI-EAS1656_0009_FC:3:86:18362:16090#0--HWUSI-EAS1656_000;p_id=P2020;gene_id=YER078C;tss_id=TSS2496;nbOverlaps=155;ID=YER078C;Name=ICP55
VI	S-MART	transcript	95761	96615	.	-	.	seqedit=false;p_id=P2087;gene_id=YFL021C-A;tss_id=TSS5866;nbOverlaps=0;ID=YFL021C-A;Name=YFL021C-A
V	S-MART	transcript	314534	316600	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:11305:19925#0--HWUSI-EAS1656_0009_FC:3:39:17271:12811#0--HWUSI-EAS1656_000;p_id=P1688;gene_id=YER077C;tss_id=TSS1026;nbOverlaps=168;ID=YER077C;Name=YER077C
V	S-MART	transcript	318646	318810	.	+	.	seqedit=false;p_id=P3606;gene_id=YER078W-A;tss_id=TSS2581;nbOverlaps=0;ID=YER078W-A;Name=YER078W-A
V	S-MART	transcript	319902	320240	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:6180:3669#0--HWUSI-EAS1656_0009_FC:3:9:2837:16069#0--HWUSI-EAS1656_0009_F;p_id=P5429;gene_id=YER079C-A;tss_id=TSS2293;nbOverlaps=56;ID=YER079C-A;Name=YER079C-A
V	S-MART	transcript	319963	321846	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:10721:12817#0--HWUSI-EAS1656_0009_FC:3:69:2788:3747#0--HWUSI-EAS1656_0009;p_id=P1271;gene_id=YER080W;tss_id=TSS2949;nbOverlaps=370;ID=YER080W;Name=AIM9
XIV	S-MART	transcript	649028	651712	.	-	.	seqedit=false;p_id=P3687;gene_id=YNR013C;tss_id=TSS3827;nbOverlaps=0;ID=YNR013C;Name=PHO91
V	S-MART	transcript	318920	319552	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:19324:17961#0--HWUSI-EAS1656_0009_FC:3:14:1646:14951#0--HWUSI-EAS1656_000;p_id=P5859;gene_id=YER079W;tss_id=TSS771;nbOverlaps=15;ID=YER079W;Name=YER079W
V	S-MART	transcript	322686	324095	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:17229:8013#0--HWUSI-EAS1656_0009_FC:3:38:8879:4855#0--HWUSI-EAS1656_0009_;p_id=P6235;gene_id=YER081W;tss_id=TSS1371;nbOverlaps=2128;ID=YER081W;Name=SER3
XIV	S-MART	transcript	220659	222431	.	-	.	seqedit=false;p_id=P641;gene_id=YNL227C;tss_id=TSS1042;nbOverlaps=0;ID=YNL227C;Name=JJJ1
V	S-MART	transcript	324272	325936	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:6450:17247#0--HWUSI-EAS1656_0009_FC:3:39:3065:15033#0--HWUSI-EAS1656_0009;p_id=P3218;gene_id=YER082C;tss_id=TSS6939;nbOverlaps=511;ID=YER082C;Name=UTP7
V	S-MART	transcript	326174	327031	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:12071:18882#0--HWUSI-EAS1656_0009_FC:3:67:1657:5047#0--HWUSI-EAS1656_0009;p_id=P1343;gene_id=YER083C;tss_id=TSS3834;nbOverlaps=92;ID=YER083C;Name=GET2
V	S-MART	transcript	327598	328110	.	+	.	seqedit=false;p_id=P230;gene_id=YER084W-A;tss_id=TSS1771;nbOverlaps=0;ID=YER084W-A;Name=YER084W-A
V	S-MART	transcript	327065	327451	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:3550:4916#0;p_id=P1172;gene_id=YER084W;tss_id=TSS3276;nbOverlaps=1;ID=YER084W;Name=YER084W
XIV	S-MART	transcript	653387	654541	.	+	.	seqedit=false;p_id=P957;gene_id=YNR015W;tss_id=TSS3441;nbOverlaps=0;ID=YNR015W;Name=SMM1
V	S-MART	transcript	328477	330207	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:53:9484:1300#0--HWUSI-EAS1656_0009_FC:3:64:4062:8333#0--HWUSI-EAS1656_0009_F;p_id=P6049;gene_id=YER086W;tss_id=TSS1640;nbOverlaps=1153;ID=YER086W;Name=ILV1
V	S-MART	transcript	327619	328140	.	-	.	seqedit=false;p_id=P1729;gene_id=YER085C;tss_id=TSS1949;nbOverlaps=0;ID=YER085C;Name=YER085C
XIV	S-MART	transcript	222239	222649	.	+	.	seqedit=false;p_id=P4054;gene_id=YNL226W;tss_id=TSS5352;nbOverlaps=0;ID=YNL226W;Name=YNL226W
V	S-MART	transcript	331817	332368	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:17390:6567#0--HWUSI-EAS1656_0009_FC:3:1:12802:5273#0--HWUSI-EAS1656_0009_;p_id=P1085;gene_id=YER087C-A;tss_id=TSS7008;nbOverlaps=12;ID=YER087C-A;Name=YER087C-A
V	S-MART	transcript	332582	332830	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:1701:13867#0--HWUSI-EAS1656_0009_FC:3:15:15501:1435#0--HWUSI-EAS1656_000;p_id=P990;gene_id=YER087C-B;tss_id=TSS3249;nbOverlaps=124;ID=YER087C-B;Name=SBH1
V	S-MART	transcript	330576	332306	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:15704:9069#0--HWUSI-EAS1656_0009_FC:3:85:11557:10706#0--HWUSI-EAS1656_000;p_id=P5307;gene_id=YER087W;tss_id=TSS5597;nbOverlaps=59;ID=YER087W;Name=AIM10
I	S-MART	transcript	113614	114615	.	-	.	seqedit=false;p_id=P1743;gene_id=YAL020C;tss_id=TSS6336;nbOverlaps=0;ID=YAL020C;Name=ATS1
V	S-MART	transcript	333176	335188	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:8694:4516#0--HWUSI-EAS1656_0009_FC:3:95:14035:5816#0--HWUSI-EAS1656_0009_;p_id=P6232;gene_id=YER088C;tss_id=TSS2668;nbOverlaps=167;ID=YER088C;Name=DOT6
VII	S-MART	transcript	459854	461365	.	+	.	seqedit=false;p_id=P307;gene_id=YGL017W;tss_id=TSS2323;nbOverlaps=0;ID=YGL017W;Name=ATE1
V	S-MART	transcript	335696	336019	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:12307:16789#0--HWUSI-EAS1656_0009_FC:3:60:4583:2883#0--HWUSI-EAS1656_0009;p_id=P1413;gene_id=YER088C-A;tss_id=TSS1559;nbOverlaps=24;ID=YER088C-A;Name=YER088C-A
V	S-MART	transcript	335927	336073	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:45:8782:13924#0--HWUSI-EAS1656_0009_FC:3:10:17516:11417#0--HWUSI-EAS1656_000;p_id=P242;gene_id=YER088W-B;tss_id=TSS1550;nbOverlaps=13;ID=YER088W-B;Name=YER088W-B
XIV	S-MART	transcript	507758	508702	.	+	.	seqedit=false;p_id=P4266;gene_id=YNL063W;tss_id=TSS3739;nbOverlaps=0;ID=YNL063W;Name=MTQ1
V	S-MART	transcript	335946	337340	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:10986:4421#0--HWUSI-EAS1656_0009_FC:3:17:8551:13246#0--HWUSI-EAS1656_0009;p_id=P5310;gene_id=YER089C;tss_id=TSS6351;nbOverlaps=196;ID=YER089C;Name=PTC2
V	S-MART	transcript	338322	338411	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:7899:10363#0--HWUSI-EAS1656_0009_FC:3:89:3027:16343#0--HWUSI-EAS1656_000;p_id=P902;gene_id=YER090C-A;tss_id=TSS3594;nbOverlaps=52;ID=YER090C-A;Name=YER090C-A
V	S-MART	transcript	337949	339472	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:12288:3420#0--HWUSI-EAS1656_0009_FC:3:6:2338:11922#0--HWUSI-EAS1656_0009_;p_id=P275;gene_id=YER090W;tss_id=TSS4377;nbOverlaps=672;ID=YER090W;Name=TRP2
V	S-MART	transcript	339864	342167	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:10640:3560#0--HWUSI-EAS1656_0009_FC:3:110:8828:11484#0--HWUSI-EAS1656_00;p_id=P5005;gene_id=YER091C;tss_id=TSS4929;nbOverlaps=33966;ID=YER091C;Name=MET6
VII	S-MART	transcript	459110	459664	.	-	.	seqedit=false;p_id=P5460;gene_id=YGL018C;tss_id=TSS756;nbOverlaps=0;ID=YGL018C;Name=JAC1
V	S-MART	transcript	342390	342611	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:13680:5837#0--HWUSI-EAS1656_0009_FC:3:117:17256:11374#0;p_id=P875;gene_id=YER091C-A;tss_id=TSS1307;nbOverlaps=2;ID=YER091C-A;Name=YER091C-A
V	S-MART	transcript	342855	343232	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:5168:9438#0--HWUSI-EAS1656_0009_FC:3:46:19207:19193#0--HWUSI-EAS1656_0009;p_id=P2671;gene_id=YER092W;tss_id=TSS3882;nbOverlaps=172;ID=YER092W;Name=IES5
XIV	S-MART	transcript	505868	507097	.	-	.	seqedit=false;p_id=P2347;gene_id=YNL064C;tss_id=TSS4696;nbOverlaps=0;ID=YNL064C;Name=YDJ1
V	S-MART	transcript	343320	347612	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:14643:9029#0--HWUSI-EAS1656_0009_FC:3:61:1361:20114#0--HWUSI-EAS1656_0009;p_id=P77;gene_id=YER093C;tss_id=TSS6248;nbOverlaps=233;ID=YER093C;Name=TSC11
V	S-MART	transcript	347912	348400	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:1:8152:12832#0--HWUSI-EAS1656_0009_FC:3:12:6391:1375#0--HWUSI-EAS1656_0009_F;p_id=P5873;gene_id=YER093C-A;tss_id=TSS5333;nbOverlaps=33;ID=YER093C-A;Name=AIM11
V	S-MART	exon	347912	348201	.	-	.	ID=YER093C-A-exon1;Name=AIM11-exon1;Parent=YER093C-A
V	S-MART	exon	348277	348400	.	-	.	ID=YER093C-A-exon2;Name=AIM11-exon2;Parent=YER093C-A
Mito	S-MART	transcript	36540	43647	.	+	.	seqedit=false;p_id=P1384;gene_id=Q0105;tss_id=TSS5491;nbOverlaps=0;ID=Q0105;Name=COB
Mito	S-MART	exon	36540	36954	.	+	.	ID=Q0105-exon1;Name=COB-exon1;Parent=Q0105
Mito	S-MART	exon	37723	37736	.	+	.	ID=Q0105-exon2;Name=COB-exon2;Parent=Q0105
Mito	S-MART	exon	39141	39217	.	+	.	ID=Q0105-exon3;Name=COB-exon3;Parent=Q0105
Mito	S-MART	exon	40841	41090	.	+	.	ID=Q0105-exon4;Name=COB-exon4;Parent=Q0105
Mito	S-MART	exon	42508	42558	.	+	.	ID=Q0105-exon5;Name=COB-exon5;Parent=Q0105
Mito	S-MART	exon	43297	43647	.	+	.	ID=Q0105-exon6;Name=COB-exon6;Parent=Q0105
V	S-MART	transcript	348729	349346	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:11548:18531#0--HWUSI-EAS1656_0009_FC:3:62:15425:10772#0--HWUSI-EAS1656_00;p_id=P1344;gene_id=YER094C;tss_id=TSS6217;nbOverlaps=1029;ID=YER094C;Name=PUP3
V	S-MART	transcript	349980	351182	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:5672:3846#0--HWUSI-EAS1656_0009_FC:3:5:8292:19062#0--HWUSI-EAS1656_0009_F;p_id=P1539;gene_id=YER095W;tss_id=TSS6520;nbOverlaps=465;ID=YER095W;Name=RAD51
XIV	S-MART	transcript	503724	505484	.	+	.	seqedit=false;p_id=P525;gene_id=YNL065W;tss_id=TSS4439;nbOverlaps=0;ID=YNL065W;Name=AQR1
V	S-MART	transcript	351698	353236	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:10120:15685#0--HWUSI-EAS1656_0009_FC:3:66:14500:17768#0--HWUSI-EAS1656_000;p_id=P1667;gene_id=YER096W;tss_id=TSS5761;nbOverlaps=36;ID=YER096W;Name=SHC1
V	S-MART	transcript	355466	357730	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:9897:14624#0--HWUSI-EAS1656_0009_FC:3:38:4544:6841#0--HWUSI-EAS1656_0009_F;p_id=P6201;gene_id=YER098W;tss_id=TSS2569;nbOverlaps=69;ID=YER098W;Name=UBP9
V	S-MART	transcript	355140	355469	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:15553:9845#0--HWUSI-EAS1656_0009_FC:3:45:6027:19617#0--HWUSI-EAS1656_0009;p_id=P3334;gene_id=YER097W;tss_id=TSS5404;nbOverlaps=6;ID=YER097W;Name=YER097W
V	S-MART	transcript	358105	359061	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:12346:2428#0--HWUSI-EAS1656_0009_FC:3:3:12782:21051#0--HWUSI-EAS1656_0009;p_id=P6288;gene_id=YER099C;tss_id=TSS2995;nbOverlaps=320;ID=YER099C;Name=PRS2
XIV	S-MART	transcript	664270	664944	.	+	.	seqedit=false;p_id=P6442;gene_id=YNR018W;tss_id=TSS2367;nbOverlaps=0;ID=YNR018W;Name=AIM38
V	S-MART	transcript	359562	360314	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:9894:4480#0--HWUSI-EAS1656_0009_FC:3:46:18917:5149#0--HWUSI-EAS1656_0009;p_id=P417;gene_id=YER100W;tss_id=TSS4555;nbOverlaps=166;ID=YER100W;Name=UBC6
V	S-MART	transcript	360502	361794	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:3498:3462#0--HWUSI-EAS1656_0009_FC:3:4:15953:11153#0--HWUSI-EAS1656_0009;p_id=P5818;gene_id=YER101C;tss_id=TSS3751;nbOverlaps=36;ID=YER101C;Name=AST2
XIV	S-MART	transcript	501515	502777	.	+	.	seqedit=false;p_id=P5734;gene_id=YNL066W;tss_id=TSS5594;nbOverlaps=0;ID=YNL066W;Name=SUN4
V	S-MART	transcript	363100	363702	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:12291:10884#0--HWUSI-EAS1656_0009_FC:3:10:12797:4289#0--HWUSI-EAS1656_00;p_id=P2494;gene_id=YER102W;tss_id=TSS2543;nbOverlaps=13622;ID=YER102W;Name=RPS8B
V	S-MART	transcript	364589	366517	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:13:11060:20140#0--HWUSI-EAS1656_0009_FC:3:33:10507:16617#0--HWUSI-EAS1656_00;p_id=P5181;gene_id=YER103W;tss_id=TSS954;nbOverlaps=115;ID=YER103W;Name=SSA4
V	S-MART	transcript	366802	367428	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:3927:15796#0--HWUSI-EAS1656_0009_FC:3:26:6815:4318#0--HWUSI-EAS1656_0009_F;p_id=P3388;gene_id=YER104W;tss_id=TSS279;nbOverlaps=15;ID=YER104W;Name=RTT105
V	S-MART	transcript	367838	372013	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:41:15862:13589#0--HWUSI-EAS1656_0009_FC:3:51:6875:9990#0--HWUSI-EAS1656_0009;p_id=P1368;gene_id=YER105C;tss_id=TSS2743;nbOverlaps=1260;ID=YER105C;Name=NUP157
XIV	S-MART	transcript	665339	667267	.	+	.	seqedit=false;p_id=P10;gene_id=YNR019W;tss_id=TSS6618;nbOverlaps=0;ID=YNR019W;Name=ARE2
V	S-MART	transcript	372326	373234	.	+	.	seqedit=false;p_id=P4529;gene_id=YER106W;tss_id=TSS6528;nbOverlaps=0;ID=YER106W;Name=MAM1
V	S-MART	transcript	373448	374545	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:53:7684:10346#0--HWUSI-EAS1656_0009_FC:3:73:10174:14235#0--HWUSI-EAS1656_000;p_id=P5109;gene_id=YER107C;tss_id=TSS1908;nbOverlaps=387;ID=YER107C;Name=GLE2
XIV	S-MART	transcript	214923	215801	.	+	.	seqedit=false;p_id=P3427;gene_id=YNL232W;tss_id=TSS21;nbOverlaps=0;ID=YNL232W;Name=CSL4
IV	S-MART	transcript	473157	473783	.	+	.	seqedit=false;p_id=P3050;gene_id=YDR013W;tss_id=TSS2232;nbOverlaps=0;ID=YDR013W;Name=PSF1
IV	S-MART	transcript	474046	475989	.	+	.	seqedit=false;p_id=P4878;gene_id=YDR014W;tss_id=TSS6675;nbOverlaps=0;ID=YDR014W;Name=RAD61
IV	S-MART	transcript	477797	478285	.	+	.	seqedit=false;p_id=P1875;gene_id=YDR014W-A;tss_id=TSS5705;nbOverlaps=0;ID=YDR014W-A;Name=HED1
XIV	S-MART	transcript	667410	668222	.	-	.	seqedit=false;p_id=P1362;gene_id=YNR020C;tss_id=TSS1235;nbOverlaps=0;ID=YNR020C;Name=ATP23
IV	S-MART	transcript	478474	478758	.	-	.	seqedit=false;p_id=P4037;gene_id=YDR016C;tss_id=TSS90;nbOverlaps=0;ID=YDR016C;Name=DAD1
IV	S-MART	transcript	477960	478199	.	-	.	seqedit=false;p_id=P4684;gene_id=YDR015C;tss_id=TSS6227;nbOverlaps=0;ID=YDR015C;Name=YDR015C
XIV	S-MART	transcript	211922	214600	.	+	.	seqedit=false;p_id=P5069;gene_id=YNL233W;tss_id=TSS2689;nbOverlaps=0;ID=YNL233W;Name=BNI4
IV	S-MART	transcript	479115	482267	.	-	.	seqedit=false;p_id=P4458;gene_id=YDR017C;tss_id=TSS2024;nbOverlaps=0;ID=YDR017C;Name=KCS1
XVI	S-MART	transcript	157842	159593	.	+	.	seqedit=false;p_id=P5991;gene_id=YPL208W;tss_id=TSS5782;nbOverlaps=0;ID=YPL208W;Name=RKM1
IV	S-MART	transcript	484163	485365	.	-	.	seqedit=false;p_id=P497;gene_id=YDR019C;tss_id=TSS1593;nbOverlaps=0;ID=YDR019C;Name=GCV1
VIII	S-MART	transcript	140011	141402	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:12723:15005#0--HWUSI-EAS1656_0009_FC:3:34:17045:2417#0--HWUSI-EAS1656_000;p_id=P872;gene_id=YHR018C;tss_id=TSS3749;nbOverlaps=1318;ID=YHR018C;Name=ARG4
IV	S-MART	transcript	482670	483860	.	-	.	seqedit=false;p_id=P3511;gene_id=YDR018C;tss_id=TSS3031;nbOverlaps=0;ID=YDR018C;Name=YDR018C
IV	S-MART	transcript	485746	486444	.	-	.	seqedit=false;p_id=P5612;gene_id=YDR020C;tss_id=TSS1415;nbOverlaps=0;ID=YDR020C;Name=DAS2
XIV	S-MART	transcript	669774	670193	.	-	.	seqedit=false;p_id=P3044;gene_id=YNR022C;tss_id=TSS4862;nbOverlaps=0;ID=YNR022C;Name=MRPL50
IV	S-MART	transcript	486804	488003	.	+	.	seqedit=false;p_id=P2141;gene_id=YDR021W;tss_id=TSS2087;nbOverlaps=0;ID=YDR021W;Name=FAL1
IV	S-MART	transcript	488072	488662	.	-	.	seqedit=false;p_id=P3809;gene_id=YDR022C;tss_id=TSS1841;nbOverlaps=0;ID=YDR022C;Name=CIS1
XIV	S-MART	transcript	206930	209854	.	+	.	seqedit=false;p_id=P6274;gene_id=YNL236W;tss_id=TSS3534;nbOverlaps=0;ID=YNL236W;Name=SIN4
IV	S-MART	transcript	489508	490896	.	+	.	seqedit=false;p_id=P336;gene_id=YDR023W;tss_id=TSS3099;nbOverlaps=0;ID=YDR023W;Name=SES1
IV	S-MART	transcript	491017	491502	.	+	.	seqedit=false;p_id=P4119;gene_id=YDR024W;tss_id=TSS4967;nbOverlaps=0;ID=YDR024W;Name=FYV1
I	S-MART	transcript	118564	119541	.	-	.	seqedit=false;p_id=P2971;gene_id=YAL018C;tss_id=TSS2283;nbOverlaps=0;ID=YAL018C;Name=YAL018C
IV	S-MART	transcript	491515	492324	.	+	.	seqedit=false;p_id=P1649;gene_id=YDR025W;tss_id=TSS3843;nbOverlaps=0;ID=YDR025W;Name=RPS11A
IV	S-MART	exon	491515	491559	.	+	.	ID=YDR025W-exon1;Name=RPS11A-exon1;Parent=YDR025W
IV	S-MART	exon	491899	492324	.	+	.	ID=YDR025W-exon2;Name=RPS11A-exon2;Parent=YDR025W
XIV	S-MART	transcript	668377	669591	.	+	.	seqedit=false;p_id=P669;gene_id=YNR021W;tss_id=TSS6743;nbOverlaps=0;ID=YNR021W;Name=YNR021W
IV	S-MART	transcript	494649	497318	.	-	.	seqedit=false;p_id=P4077;gene_id=YDR027C;tss_id=TSS2690;nbOverlaps=0;ID=YDR027C;Name=VPS54
VI	S-MART	transcript	76831	77988	.	+	.	seqedit=false;p_id=P2196;gene_id=YFL030W;tss_id=TSS3531;nbOverlaps=0;ID=YFL030W;Name=AGX1
IV	S-MART	transcript	492556	494268	.	-	.	seqedit=false;p_id=P5828;gene_id=YDR026C;tss_id=TSS560;nbOverlaps=0;ID=YDR026C;Name=YDR026C
XII	S-MART	transcript	745620	746525	.	+	.	seqedit=false;p_id=P2039;gene_id=YLR307W;tss_id=TSS3624;nbOverlaps=0;ID=YLR307W;Name=CDA1
IV	S-MART	transcript	497835	500879	.	-	.	seqedit=false;p_id=P2220;gene_id=YDR028C;tss_id=TSS5359;nbOverlaps=0;ID=YDR028C;Name=REG1
VIII	S-MART	transcript	147871	148669	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:2421:17535#0--HWUSI-EAS1656_0009_FC:3:17:14952:4963#0--HWUSI-EAS1656_000;p_id=P4639;gene_id=YHR021C;tss_id=TSS5157;nbOverlaps=3561;ID=YHR021C;Name=RPS27B
VIII	S-MART	exon	147871	148116	.	-	.	ID=YHR021C-exon1;Name=RPS27B-exon1;Parent=YHR021C
VIII	S-MART	exon	148667	148669	.	-	.	ID=YHR021C-exon2;Name=RPS27B-exon2;Parent=YHR021C
IV	S-MART	transcript	501753	503273	.	-	.	seqedit=false;p_id=P4569;gene_id=YDR030C;tss_id=TSS2516;nbOverlaps=0;ID=YDR030C;Name=RAD28
IV	S-MART	transcript	501100	501414	.	+	.	seqedit=false;p_id=P4108;gene_id=YDR029W;tss_id=TSS3163;nbOverlaps=0;ID=YDR029W;Name=YDR029W
XIV	S-MART	transcript	670418	672118	.	+	.	seqedit=false;p_id=P3172;gene_id=YNR023W;tss_id=TSS4287;nbOverlaps=0;ID=YNR023W;Name=SNF12
IV	S-MART	transcript	503498	503863	.	+	.	seqedit=false;p_id=P1017;gene_id=YDR031W;tss_id=TSS6016;nbOverlaps=0;ID=YDR031W;Name=MIC14
IV	S-MART	transcript	504099	504695	.	-	.	seqedit=false;p_id=P2875;gene_id=YDR032C;tss_id=TSS977;nbOverlaps=0;ID=YDR032C;Name=PST2
XIV	S-MART	transcript	209548	209979	.	-	.	seqedit=false;p_id=P3679;gene_id=YNL235C;tss_id=TSS2889;nbOverlaps=0;ID=YNL235C;Name=YNL235C
IV	S-MART	transcript	508147	509109	.	+	.	seqedit=false;p_id=P905;gene_id=YDR033W;tss_id=TSS6929;nbOverlaps=0;ID=YDR033W;Name=MRH1
IV	S-MART	transcript	509737	512109	.	-	.	seqedit=false;p_id=P4640;gene_id=YDR034C;tss_id=TSS122;nbOverlaps=0;ID=YDR034C;Name=LYS14
VIII	S-MART	transcript	143996	146062	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:1636:12021#0--HWUSI-EAS1656_0009_FC:3:15:16723:16130#0--HWUSI-EAS1656_000;p_id=P5827;gene_id=YHR020W;tss_id=TSS6715;nbOverlaps=4796;ID=YHR020W;Name=YHR020W
IV	S-MART	transcript	520516	520692	.	-	.	seqedit=false;p_id=P944;gene_id=YDR034C-A;tss_id=TSS280;nbOverlaps=0;ID=YDR034C-A;Name=YDR034C-A
IV	S-MART	transcript	518040	519356	.	-	.	seqedit=false;p_id=P6665;gene_id=YDR034C-C;tss_id=TSS3466;nbOverlaps=0;ID=YDR034C-C;Name=YDR034C-C
VII	S-MART	transcript	446412	448535	.	-	.	seqedit=false;p_id=P2825;gene_id=YGL026C;tss_id=TSS5373;nbOverlaps=0;ID=YGL026C;Name=TRP5
IV	S-MART	transcript	514043	519356	.	-	.	seqedit=false;p_id=P4281;gene_id=YDR034C-D;tss_id=TSS3466;nbOverlaps=0;ID=YDR034C-D;Name=YDR034C-D
IV	S-MART	exon	514043	518062	.	-	.	ID=YDR034C-D-exon1;Name=YDR034C-D-exon1;Parent=YDR034C-D
IV	S-MART	exon	518064	519356	.	-	.	ID=YDR034C-D-exon2;Name=YDR034C-D-exon2;Parent=YDR034C-D
XIV	S-MART	transcript	205188	206567	.	+	.	seqedit=false;p_id=P3894;gene_id=YNL237W;tss_id=TSS5945;nbOverlaps=0;ID=YNL237W;Name=YTP1
IV	S-MART	transcript	521314	521469	.	+	.	seqedit=false;p_id=P1163;gene_id=YDR034W-B;tss_id=TSS4360;nbOverlaps=0;ID=YDR034W-B;Name=YDR034W-B
I	S-MART	transcript	110846	113359	.	-	.	seqedit=false;p_id=P3084;gene_id=YAL021C;tss_id=TSS6725;nbOverlaps=0;ID=YAL021C;Name=CCR4
IV	S-MART	transcript	521816	522928	.	+	.	seqedit=false;p_id=P2639;gene_id=YDR035W;tss_id=TSS410;nbOverlaps=0;ID=YDR035W;Name=ARO3
IV	S-MART	transcript	523211	524713	.	-	.	seqedit=false;p_id=P6113;gene_id=YDR036C;tss_id=TSS1834;nbOverlaps=0;ID=YDR036C;Name=EHD3
XIV	S-MART	transcript	673274	674689	.	-	.	seqedit=false;p_id=P4979;gene_id=YNR026C;tss_id=TSS6777;nbOverlaps=0;ID=YNR026C;Name=SEC12
IV	S-MART	transcript	525440	527215	.	+	.	seqedit=false;p_id=P2245;gene_id=YDR037W;tss_id=TSS4097;nbOverlaps=0;ID=YDR037W;Name=KRS1
IV	S-MART	transcript	527422	530697	.	-	.	seqedit=false;p_id=P596;gene_id=YDR038C;tss_id=TSS3731;nbOverlaps=0;ID=YDR038C;Name=ENA5
XVI	S-MART	transcript	379120	381150	.	-	.	seqedit=false;p_id=P4803;gene_id=YPL089C;tss_id=TSS2082;nbOverlaps=0;ID=YPL089C;Name=RLM1
XVI	S-MART	transcript	565787	566671	.	-	.	seqedit=false;p_id=P6193;gene_id=YPR005C;tss_id=TSS5611;nbOverlaps=0;ID=YPR005C;Name=HAL1
IV	S-MART	transcript	531307	534582	.	-	.	seqedit=false;p_id=P1941;gene_id=YDR039C;tss_id=TSS3786;nbOverlaps=0;ID=YDR039C;Name=ENA2
IV	S-MART	transcript	535192	538467	.	-	.	seqedit=false;p_id=P6652;gene_id=YDR040C;tss_id=TSS4703;nbOverlaps=0;ID=YDR040C;Name=ENA1
I	S-MART	transcript	108877	110430	.	-	.	seqedit=false;p_id=P3289;gene_id=YAL022C;tss_id=TSS2266;nbOverlaps=0;ID=YAL022C;Name=FUN26
IV	S-MART	transcript	539803	540414	.	+	.	seqedit=false;p_id=P6295;gene_id=YDR041W;tss_id=TSS2613;nbOverlaps=0;ID=YDR041W;Name=RSM10
IV	S-MART	transcript	542674	543369	.	-	.	seqedit=false;p_id=P3672;gene_id=YDR043C;tss_id=TSS3795;nbOverlaps=0;ID=YDR043C;Name=NRG1
XIV	S-MART	transcript	672702	673061	.	-	.	seqedit=false;p_id=P6039;gene_id=YNR025C;tss_id=TSS3464;nbOverlaps=0;ID=YNR025C;Name=YNR025C
IV	S-MART	transcript	540601	541203	.	-	.	seqedit=false;p_id=P629;gene_id=YDR042C;tss_id=TSS7012;nbOverlaps=0;ID=YDR042C;Name=YDR042C
X	S-MART	transcript	542956	543044	.	-	.	seqedit=false;gene_id=tY(GUA)J2;tss_id=TSS4535;nbOverlaps=0;ID=tY(GUA)J2;Name=SUP4
X	S-MART	exon	542956	542991	.	-	.	ID=tY(GUA)J2-exon1;Name=SUP4-exon1;Parent=tY(GUA)J2
X	S-MART	exon	543006	543044	.	-	.	ID=tY(GUA)J2-exon2;Name=SUP4-exon2;Parent=tY(GUA)J2
IV	S-MART	transcript	546642	547628	.	+	.	seqedit=false;p_id=P4989;gene_id=YDR044W;tss_id=TSS6761;nbOverlaps=0;ID=YDR044W;Name=HEM13
XIV	S-MART	transcript	493366	493548	.	+	.	seqedit=false;p_id=P5537;gene_id=YNL070W;tss_id=TSS5553;nbOverlaps=0;ID=YNL070W;Name=TOM7
IV	S-MART	transcript	547978	548310	.	-	.	seqedit=false;p_id=P4686;gene_id=YDR045C;tss_id=TSS6972;nbOverlaps=0;ID=YDR045C;Name=RPC11
IV	S-MART	transcript	548762	550576	.	-	.	seqedit=false;p_id=P2666;gene_id=YDR046C;tss_id=TSS1837;nbOverlaps=0;ID=YDR046C;Name=BAP3
I	S-MART	transcript	106272	108551	.	-	.	seqedit=false;p_id=P6277;gene_id=YAL023C;tss_id=TSS6996;nbOverlaps=0;ID=YAL023C;Name=PMT2
IV	S-MART	transcript	551860	552948	.	+	.	seqedit=false;p_id=P5646;gene_id=YDR047W;tss_id=TSS5129;nbOverlaps=0;ID=YDR047W;Name=HEM12
IV	S-MART	transcript	553254	555152	.	+	.	seqedit=false;p_id=P4513;gene_id=YDR049W;tss_id=TSS5171;nbOverlaps=0;ID=YDR049W;Name=VMS1
VII	S-MART	transcript	440063	440425	.	+	.	seqedit=false;p_id=P46;gene_id=YGL029W;tss_id=TSS6543;nbOverlaps=0;ID=YGL029W;Name=CGR1
IV	S-MART	transcript	553084	553398	.	-	.	seqedit=false;p_id=P4185;gene_id=YDR048C;tss_id=TSS3643;nbOverlaps=0;ID=YDR048C;Name=YDR048C
IV	S-MART	transcript	555726	556472	.	-	.	seqedit=false;p_id=P4491;gene_id=YDR050C;tss_id=TSS3182;nbOverlaps=0;ID=YDR050C;Name=TPI1
VI	S-MART	transcript	69115	74427	.	-	.	seqedit=false;p_id=P2015;gene_id=YFL033C;tss_id=TSS4455;nbOverlaps=0;ID=YFL033C;Name=RIM15
IV	S-MART	transcript	557056	558060	.	-	.	seqedit=false;p_id=P5437;gene_id=YDR051C;tss_id=TSS6005;nbOverlaps=0;ID=YDR051C;Name=DET1
IV	S-MART	transcript	558511	560625	.	-	.	seqedit=false;p_id=P5600;gene_id=YDR052C;tss_id=TSS1089;nbOverlaps=0;ID=YDR052C;Name=DBF4
XIII	S-MART	transcript	611016	611255	.	+	.	seqedit=false;p_id=P441;gene_id=YMR175W;tss_id=TSS5407;nbOverlaps=0;ID=YMR175W;Name=SIP18
IV	S-MART	transcript	561440	562327	.	-	.	seqedit=false;p_id=P2385;gene_id=YDR054C;tss_id=TSS5664;nbOverlaps=0;ID=YDR054C;Name=CDC34
IV	S-MART	transcript	560249	560644	.	+	.	seqedit=false;p_id=P3073;gene_id=YDR053W;tss_id=TSS4044;nbOverlaps=0;ID=YDR053W;Name=YDR053W
XIV	S-MART	transcript	676177	677103	.	+	.	seqedit=false;p_id=P6370;gene_id=YNR028W;tss_id=TSS4724;nbOverlaps=0;ID=YNR028W;Name=CPR8
IV	S-MART	transcript	563527	564861	.	+	.	seqedit=false;p_id=P1766;gene_id=YDR055W;tss_id=TSS2884;nbOverlaps=0;ID=YDR055W;Name=PST1
IV	S-MART	transcript	565927	567555	.	+	.	seqedit=false;p_id=P4076;gene_id=YDR057W;tss_id=TSS4333;nbOverlaps=0;ID=YDR057W;Name=YOS9
XV	S-MART	transcript	586950	587342	.	-	.	seqedit=false;p_id=P434;gene_id=YOR139C;tss_id=TSS2494;nbOverlaps=0;ID=YOR139C;Name=YOR139C
XIV	S-MART	transcript	196426	197943	.	-	.	seqedit=false;p_id=P6431;gene_id=YNL241C;tss_id=TSS420;nbOverlaps=0;ID=YNL241C;Name=ZWF1
IV	S-MART	transcript	565023	565640	.	-	.	seqedit=false;p_id=P4721;gene_id=YDR056C;tss_id=TSS5028;nbOverlaps=0;ID=YDR056C;Name=YDR056C
IV	S-MART	transcript	567723	568703	.	-	.	seqedit=false;p_id=P3858;gene_id=YDR058C;tss_id=TSS3131;nbOverlaps=0;ID=YDR058C;Name=TGL2
I	S-MART	transcript	100225	101145	.	-	.	seqedit=false;p_id=P3298;gene_id=YAL025C;tss_id=TSS5402;nbOverlaps=0;ID=YAL025C;Name=MAK16
IV	S-MART	transcript	569234	569770	.	-	.	seqedit=false;p_id=P3121;gene_id=YDR059C;tss_id=TSS1433;nbOverlaps=0;ID=YDR059C;Name=UBC5
IV	S-MART	exon	569234	569633	.	-	.	ID=YDR059C-exon1;Name=UBC5-exon1;Parent=YDR059C
IV	S-MART	exon	569724	569770	.	-	.	ID=YDR059C-exon2;Name=UBC5-exon2;Parent=YDR059C
IV	S-MART	transcript	570649	573726	.	+	.	seqedit=false;p_id=P509;gene_id=YDR060W;tss_id=TSS1723;nbOverlaps=0;ID=YDR060W;Name=MAK21
XIV	S-MART	transcript	191324	196102	.	+	.	seqedit=false;p_id=P6376;gene_id=YNL242W;tss_id=TSS3969;nbOverlaps=0;ID=YNL242W;Name=ATG2
IV	S-MART	transcript	576474	578159	.	+	.	seqedit=false;p_id=P1950;gene_id=YDR062W;tss_id=TSS4271;nbOverlaps=0;ID=YDR062W;Name=LCB2
IV	S-MART	transcript	574164	575783	.	+	.	seqedit=false;p_id=P4971;gene_id=YDR061W;tss_id=TSS4187;nbOverlaps=0;ID=YDR061W;Name=YDR061W
I	S-MART	transcript	95630	99697	.	-	.	seqedit=false;p_id=P4275;gene_id=YAL026C;tss_id=TSS622;nbOverlaps=0;ID=YAL026C;Name=DRS2
IV	S-MART	transcript	578663	579112	.	+	.	seqedit=false;p_id=P3025;gene_id=YDR063W;tss_id=TSS2092;nbOverlaps=0;ID=YDR063W;Name=AIM7
IV	S-MART	transcript	579458	580452	.	+	.	seqedit=false;p_id=P850;gene_id=YDR064W;tss_id=TSS4222;nbOverlaps=0;ID=YDR064W;Name=RPS13
IV	S-MART	exon	579458	579478	.	+	.	ID=YDR064W-exon1;Name=RPS13-exon1;Parent=YDR064W
IV	S-MART	exon	580018	580452	.	+	.	ID=YDR064W-exon2;Name=RPS13-exon2;Parent=YDR064W
XVI	S-MART	transcript	136750	138228	.	+	.	seqedit=false;p_id=P3163;gene_id=YPL219W;tss_id=TSS2746;nbOverlaps=0;ID=YPL219W;Name=PCL8
VIII	S-MART	transcript	328303	330060	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:2231:13581#0--HWUSI-EAS1656_0009_FC:3:112:7410:16574#0--HWUSI-EAS1656_000;p_id=P2606;gene_id=YHR108W;tss_id=TSS2004;nbOverlaps=570;ID=YHR108W;Name=GGA2
XIV	S-MART	transcript	188051	190957	.	+	.	seqedit=false;p_id=P5727;gene_id=YNL243W;tss_id=TSS5369;nbOverlaps=0;ID=YNL243W;Name=SLA2
VIII	S-MART	transcript	330310	332067	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:86:7516:12851#0--HWUSI-EAS1656_0009_FC:3:98:2587:3400#0--HWUSI-EAS1656_0009_;p_id=P3021;gene_id=YHR109W;tss_id=TSS6794;nbOverlaps=63;ID=YHR109W;Name=CTM1
VIII	S-MART	transcript	332282	332920	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:14698:10811#0--HWUSI-EAS1656_0009_FC:3:112:5116:8485#0--HWUSI-EAS1656_000;p_id=P1812;gene_id=YHR110W;tss_id=TSS2750;nbOverlaps=171;ID=YHR110W;Name=ERP5
I	S-MART	transcript	95386	95823	.	-	.	seqedit=false;p_id=P1116;gene_id=YAL026C-A;tss_id=TSS254;nbOverlaps=0;ID=YAL026C-A;Name=YAL026C-A
VIII	S-MART	transcript	333072	334394	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:32:16631:12113#0--HWUSI-EAS1656_0009_FC:3:9:14451:11286#0--HWUSI-EAS1656_000;p_id=P549;gene_id=YHR111W;tss_id=TSS6366;nbOverlaps=86;ID=YHR111W;Name=UBA4
VIII	S-MART	transcript	336337	337809	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:39:13331:8420#0--HWUSI-EAS1656_0009_FC:3:70:4806:6937#0--HWUSI-EAS1656_0009_;p_id=P2576;gene_id=YHR113W;tss_id=TSS4600;nbOverlaps=372;ID=YHR113W;Name=APE4
Mito	S-MART	transcript	36540	42251	.	+	.	seqedit=false;p_id=P2520;gene_id=Q0120;tss_id=TSS5491;nbOverlaps=0;ID=Q0120;Name=BI4
Mito	S-MART	exon	36540	36954	.	+	.	ID=Q0120-exon1;Name=BI4-exon1;Parent=Q0120
Mito	S-MART	exon	37723	37736	.	+	.	ID=Q0120-exon2;Name=BI4-exon2;Parent=Q0120
Mito	S-MART	exon	39141	39217	.	+	.	ID=Q0120-exon3;Name=BI4-exon3;Parent=Q0120
Mito	S-MART	exon	40841	42251	.	+	.	ID=Q0120-exon4;Name=BI4-exon4;Parent=Q0120
VIII	S-MART	transcript	334527	335663	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:78:17022:2344#0--HWUSI-EAS1656_0009_FC:3:112:5858:14878#0--HWUSI-EAS1656_000;p_id=P2725;gene_id=YHR112C;tss_id=TSS6841;nbOverlaps=493;ID=YHR112C;Name=YHR112C
VIII	S-MART	transcript	338083	339984	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:6390:8901#0--HWUSI-EAS1656_0009_FC:3:35:14648:3994#0--HWUSI-EAS1656_0009_F;p_id=P3675;gene_id=YHR114W;tss_id=TSS6544;nbOverlaps=102;ID=YHR114W;Name=BZZ1
XIV	S-MART	transcript	187170	187496	.	-	.	seqedit=false;p_id=P2210;gene_id=YNL244C;tss_id=TSS2955;nbOverlaps=0;ID=YNL244C;Name=SUI1
VIII	S-MART	transcript	340109	341359	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:2676:7142#0--HWUSI-EAS1656_0009_FC:3:14:6076:11091#0--HWUSI-EAS1656_0009_;p_id=P5941;gene_id=YHR115C;tss_id=TSS2105;nbOverlaps=83;ID=YHR115C;Name=DMA1
VIII	S-MART	transcript	341665	342120	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:10330:19804#0--HWUSI-EAS1656_0009_FC:3:107:17501:21310#0--HWUSI-EAS1656_0;p_id=P4747;gene_id=YHR116W;tss_id=TSS2198;nbOverlaps=38;ID=YHR116W;Name=COX23
VIII	S-MART	transcript	159438	160511	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:13852:19275#0--HWUSI-EAS1656_0009_FC:3:72:9886:12161#0--HWUSI-EAS1656_000;p_id=P1199;gene_id=YHR025W;tss_id=TSS1242;nbOverlaps=451;ID=YHR025W;Name=THR1
VIII	S-MART	transcript	342349	344268	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:45:9781:1705#0--HWUSI-EAS1656_0009_FC:3:25:3996:2670#0--HWUSI-EAS1656_0009_F;p_id=P2516;gene_id=YHR117W;tss_id=TSS446;nbOverlaps=323;ID=YHR117W;Name=TOM71
VIII	S-MART	transcript	344321	345628	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:41:15521:17954#0--HWUSI-EAS1656_0009_FC:3:61:13575:20340#0--HWUSI-EAS1656_00;p_id=P1214;gene_id=YHR118C;tss_id=TSS1207;nbOverlaps=87;ID=YHR118C;Name=ORC6
XIV	S-MART	transcript	687243	687464	.	-	.	seqedit=false;p_id=P5725;gene_id=YNR032C-A;tss_id=TSS6475;nbOverlaps=0;ID=YNR032C-A;Name=HUB1
VIII	S-MART	transcript	346043	349285	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:10927:5009#0--HWUSI-EAS1656_0009_FC:3:71:11222:12657#0--HWUSI-EAS1656_000;p_id=P3953;gene_id=YHR119W;tss_id=TSS730;nbOverlaps=222;ID=YHR119W;Name=SET1
VIII	S-MART	transcript	349574	352453	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:98:10358:6658#0--HWUSI-EAS1656_0009_FC:3:71:5767:4314#0--HWUSI-EAS1656_0009_;p_id=P2250;gene_id=YHR120W;tss_id=TSS3049;nbOverlaps=99;ID=YHR120W;Name=MSH1
XIV	S-MART	transcript	483556	485310	.	+	.	seqedit=false;p_id=P1342;gene_id=YNL076W;tss_id=TSS718;nbOverlaps=0;ID=YNL076W;Name=MKS1
VIII	S-MART	transcript	352756	353319	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:17303:7499#0--HWUSI-EAS1656_0009_FC:3:26:19205:3137#0--HWUSI-EAS1656_000;p_id=P1321;gene_id=YHR121W;tss_id=TSS2881;nbOverlaps=114;ID=YHR121W;Name=LSM12
XII	S-MART	transcript	749034	751769	.	-	.	seqedit=false;p_id=P43;gene_id=YLR309C;tss_id=TSS525;nbOverlaps=0;ID=YLR309C;Name=IMH1
VIII	S-MART	transcript	354815	356081	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:13904:20882#0--HWUSI-EAS1656_0009_FC:3:86:1855:1493#0--HWUSI-EAS1656_0009;p_id=P1009;gene_id=YHR123W;tss_id=TSS1759;nbOverlaps=541;ID=YHR123W;Name=EPT1
VIII	S-MART	exon	354815	354864	.	+	.	ID=YHR123W-exon1;Name=EPT1-exon1;Parent=YHR123W
VIII	S-MART	exon	354956	356081	.	+	.	ID=YHR123W-exon2;Name=EPT1-exon2;Parent=YHR123W
VIII	S-MART	transcript	160844	161485	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:10723:15726#0--HWUSI-EAS1656_0009_FC:3:29:17138:2702#0--HWUSI-EAS1656_000;p_id=P557;gene_id=YHR026W;tss_id=TSS812;nbOverlaps=865;ID=YHR026W;Name=VMA16
VIII	S-MART	transcript	353625	354320	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:2321:4506#0--HWUSI-EAS1656_0009_FC:3:49:19140:3808#0--HWUSI-EAS1656_0009_;p_id=P87;gene_id=YHR122W;tss_id=TSS6886;nbOverlaps=250;ID=YHR122W;Name=YHR122W
XIV	S-MART	transcript	686010	687116	.	+	.	seqedit=false;p_id=P6663;gene_id=YNR032W;tss_id=TSS6464;nbOverlaps=0;ID=YNR032W;Name=PPG1
VIII	S-MART	transcript	356561	358444	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:10537:11107#0--HWUSI-EAS1656_0009_FC:3:66:10596:4091#0--HWUSI-EAS1656_000;p_id=P351;gene_id=YHR124W;tss_id=TSS4238;nbOverlaps=66;ID=YHR124W;Name=NDT80
XIV	S-MART	transcript	185460	186349	.	+	.	seqedit=false;p_id=P5754;gene_id=YNL246W;tss_id=TSS314;nbOverlaps=0;ID=YNL246W;Name=VPS75
XIV	S-MART	exon	185460	185491	.	+	.	ID=YNL246W-exon1;Name=VPS75-exon1;Parent=YNL246W
XIV	S-MART	exon	185587	186349	.	+	.	ID=YNL246W-exon2;Name=VPS75-exon2;Parent=YNL246W
VIII	S-MART	transcript	359702	360181	.	-	.	seqedit=false;p_id=P5391;gene_id=YHR126C;tss_id=TSS1226;nbOverlaps=0;ID=YHR126C;Name=ANS1
VIII	S-MART	transcript	358858	359163	.	+	.	seqedit=false;p_id=P4573;gene_id=YHR125W;tss_id=TSS3259;nbOverlaps=0;ID=YHR125W;Name=YHR125W
I	S-MART	transcript	87855	92270	.	-	.	seqedit=false;p_id=P3417;gene_id=YAL029C;tss_id=TSS2308;nbOverlaps=0;ID=YAL029C;Name=MYO4
VIII	S-MART	transcript	362115	362765	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:16469:11652#0--HWUSI-EAS1656_0009_FC:3:71:9631:17898#0--HWUSI-EAS1656_000;p_id=P461;gene_id=YHR128W;tss_id=TSS4165;nbOverlaps=573;ID=YHR128W;Name=FUR1
VIII	S-MART	transcript	360913	361644	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:11130:8953#0--HWUSI-EAS1656_0009_FC:3:46:16865:8300#0--HWUSI-EAS1656_0009;p_id=P6676;gene_id=YHR127W;tss_id=TSS6701;nbOverlaps=84;ID=YHR127W;Name=YHR127W
XVI	S-MART	transcript	130162	132228	.	+	.	seqedit=false;p_id=P4896;gene_id=YPL222W;tss_id=TSS3122;nbOverlaps=0;ID=YPL222W;Name=FMP40
VIII	S-MART	transcript	362999	364153	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5277:10490#0--HWUSI-EAS1656_0009_FC:3:9:18227:16987#0--HWUSI-EAS1656_000;p_id=P3206;gene_id=YHR129C;tss_id=TSS3477;nbOverlaps=95;ID=YHR129C;Name=ARP1
VIII	S-MART	transcript	367747	367992	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:10434:4227#0--HWUSI-EAS1656_0009_FC:3:55:14792:9646#0--HWUSI-EAS1656_0009;p_id=P3430;gene_id=YHR131W-A;tss_id=TSS4053;nbOverlaps=54;ID=YHR131W-A;Name=YHR131W-A
XVI	S-MART	transcript	368071	369441	.	-	.	seqedit=false;p_id=P2925;gene_id=YPL095C;tss_id=TSS5283;nbOverlaps=0;ID=YPL095C;Name=EEB1
VIII	S-MART	transcript	364965	365300	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:16:16965:14464#0--HWUSI-EAS1656_0009_FC:3:37:10497:18237#0--HWUSI-EAS1656_00;p_id=P5974;gene_id=YHR130C;tss_id=TSS6097;nbOverlaps=50;ID=YHR130C;Name=YHR130C
VIII	S-MART	transcript	365340	367892	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:4205:12679#0--HWUSI-EAS1656_0009_FC:3:64:13819:20500#0--HWUSI-EAS1656_0009;p_id=P2276;gene_id=YHR131C;tss_id=TSS3333;nbOverlaps=432;ID=YHR131C;Name=YHR131C
I	S-MART	transcript	87286	87752	.	+	.	seqedit=false;p_id=P1226;gene_id=YAL030W;tss_id=TSS6281;nbOverlaps=0;ID=YAL030W;Name=SNC1
I	S-MART	exon	87286	87387	.	+	.	ID=YAL030W-exon1;Name=SNC1-exon1;Parent=YAL030W
I	S-MART	exon	87501	87752	.	+	.	ID=YAL030W-exon2;Name=SNC1-exon2;Parent=YAL030W
VIII	S-MART	transcript	368502	369794	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:77:8136:1201#0--HWUSI-EAS1656_0009_FC:3:57:4507:19825#0--HWUSI-EAS1656_0009_;p_id=P3804;gene_id=YHR132C;tss_id=TSS4182;nbOverlaps=575;ID=YHR132C;Name=ECM14
VIII	S-MART	transcript	370054	370449	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:8270:13801#0--HWUSI-EAS1656_0009_FC:3:33:12726:16466#0--HWUSI-EAS1656_000;p_id=P4856;gene_id=YHR132W-A;tss_id=TSS3132;nbOverlaps=149;ID=YHR132W-A;Name=IGO2
XVI	S-MART	transcript	128632	129138	.	-	.	seqedit=false;p_id=P459;gene_id=YPL223C;tss_id=TSS4112;nbOverlaps=0;ID=YPL223C;Name=GRE1
VIII	S-MART	transcript	370722	371597	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:13706:10420#0--HWUSI-EAS1656_0009_FC:3:118:13203:19277#0--HWUSI-EAS1656_00;p_id=P2454;gene_id=YHR133C;tss_id=TSS2468;nbOverlaps=987;ID=YHR133C;Name=NSG1
VIII	S-MART	transcript	371749	372558	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:15169:18432#0--HWUSI-EAS1656_0009_FC:3:56:10186:19455#0--HWUSI-EAS1656_00;p_id=P505;gene_id=YHR134W;tss_id=TSS785;nbOverlaps=73;ID=YHR134W;Name=WSS1
XIV	S-MART	transcript	478566	479165	.	-	.	seqedit=false;p_id=P4673;gene_id=YNL079C;tss_id=TSS359;nbOverlaps=0;ID=YNL079C;Name=TPM1
VIII	S-MART	transcript	372694	374310	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:14777:8223#0--HWUSI-EAS1656_0009_FC:3:45:8638:4937#0--HWUSI-EAS1656_0009_;p_id=P3216;gene_id=YHR135C;tss_id=TSS5122;nbOverlaps=196;ID=YHR135C;Name=YCK1
VIII	S-MART	transcript	374654	375100	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:18659:6641#0--HWUSI-EAS1656_0009_FC:3:75:15541:15507#0--HWUSI-EAS1656_000;p_id=P5330;gene_id=YHR136C;tss_id=TSS2489;nbOverlaps=3;ID=YHR136C;Name=SPL2
VIII	S-MART	transcript	167352	167672	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:2:10713:17212#0--HWUSI-EAS1656_0009_FC:3:75:16321:13037#0--HWUSI-EAS1656_000;p_id=P3011;gene_id=YHR028W-A;tss_id=TSS1465;nbOverlaps=15;ID=YHR028W-A;Name=YHR028W-A
VIII	S-MART	transcript	375738	376388	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:18111:13092#0--HWUSI-EAS1656_0009_FC:3:96:6639:19548#0--HWUSI-EAS1656_000;p_id=P3610;gene_id=YHR137C-A;tss_id=TSS6198;nbOverlaps=121;ID=YHR137C-A;Name=YHR137C-A
VIII	S-MART	transcript	375709	377250	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:18111:13092#0--HWUSI-EAS1656_0009_FC:3:103:10853:6802#0--HWUSI-EAS1656_00;p_id=P3864;gene_id=YHR137W;tss_id=TSS3083;nbOverlaps=300;ID=YHR137W;Name=ARO9
Mito	S-MART	transcript	46723	46953	.	+	.	seqedit=false;p_id=P4965;gene_id=Q0130;tss_id=TSS3216;nbOverlaps=0;ID=Q0130;Name=OLI1
VIII	S-MART	transcript	378219	379199	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:15301:18406#0--HWUSI-EAS1656_0009_FC:3:86:15191:3319#0--HWUSI-EAS1656_000;p_id=P718;gene_id=YHR139C;tss_id=TSS3274;nbOverlaps=17;ID=YHR139C;Name=SPS100
VIII	S-MART	transcript	377355	377699	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:13555:14606#0--HWUSI-EAS1656_0009_FC:3:89:9382:5758#0--HWUSI-EAS1656_0009;p_id=P5584;gene_id=YHR138C;tss_id=TSS5041;nbOverlaps=66;ID=YHR138C;Name=YHR138C
XIV	S-MART	transcript	476932	478032	.	-	.	seqedit=false;p_id=P2700;gene_id=YNL080C;tss_id=TSS6931;nbOverlaps=0;ID=YNL080C;Name=EOS1
VIII	S-MART	transcript	380108	380419	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:78:7794:5034#0--HWUSI-EAS1656_0009_FC:3:43:14377:1410#0--HWUSI-EAS1656_0009_;p_id=P6010;gene_id=YHR139C-A;tss_id=TSS3445;nbOverlaps=7;ID=YHR139C-A;Name=YHR139C-A
VIII	S-MART	transcript	381990	382751	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:17944:5182#0--HWUSI-EAS1656_0009_FC:3:116:4446:18724#0--HWUSI-EAS1656_000;p_id=P3600;gene_id=YHR141C;tss_id=TSS4496;nbOverlaps=4553;ID=YHR141C;Name=RPL42B
VIII	S-MART	exon	381990	382306	.	-	.	ID=YHR141C-exon1;Name=RPL42B-exon1;Parent=YHR141C
VIII	S-MART	exon	382748	382751	.	-	.	ID=YHR141C-exon2;Name=RPL42B-exon2;Parent=YHR141C
VIII	S-MART	transcript	167677	168561	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:12023:18008#0--HWUSI-EAS1656_0009_FC:3:105:18588:12635#0--HWUSI-EAS1656_0;p_id=P2597;gene_id=YHR029C;tss_id=TSS4927;nbOverlaps=191;ID=YHR029C;Name=YHI9
VIII	S-MART	transcript	380572	381291	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:19647:17644#0--HWUSI-EAS1656_0009_FC:3:94:8378:5344#0--HWUSI-EAS1656_0009;p_id=P1402;gene_id=YHR140W;tss_id=TSS3188;nbOverlaps=36;ID=YHR140W;Name=YHR140W
Mito	S-MART	transcript	48901	50097	.	+	.	seqedit=false;p_id=P735;gene_id=Q0140;tss_id=TSS1772;nbOverlaps=0;ID=Q0140;Name=VAR1
VIII	S-MART	transcript	383538	384488	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:46:5049:16075#0--HWUSI-EAS1656_0009_FC:3:36:15212:17540#0--HWUSI-EAS1656_000;p_id=P286;gene_id=YHR142W;tss_id=TSS636;nbOverlaps=226;ID=YHR142W;Name=CHS7
XIV	S-MART	transcript	476188	476619	.	-	.	seqedit=false;p_id=P4133;gene_id=YNL081C;tss_id=TSS4636;nbOverlaps=0;ID=YNL081C;Name=SWS2
VIII	S-MART	transcript	385510	386487	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:5406:5970#0--HWUSI-EAS1656_0009_FC:3:37:2810:8376#0--HWUSI-EAS1656_0009_F;p_id=P2097;gene_id=YHR143W;tss_id=TSS2854;nbOverlaps=1192;ID=YHR143W;Name=DSE2
XII	S-MART	transcript	752224	756993	.	-	.	seqedit=false;p_id=P5265;gene_id=YLR310C;tss_id=TSS3636;nbOverlaps=0;ID=YLR310C;Name=CDC25
VIII	S-MART	transcript	387233	387445	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:12529:2072#0--HWUSI-EAS1656_0009_FC:3:108:12025:13661#0--HWUSI-EAS1656_0;p_id=P5024;gene_id=YHR143W-A;tss_id=TSS402;nbOverlaps=267;ID=YHR143W-A;Name=RPC10
XIII	S-MART	transcript	626921	627808	.	-	.	seqedit=false;p_id=P4448;gene_id=YMR183C;tss_id=TSS2923;nbOverlaps=0;ID=YMR183C;Name=SSO2
VIII	S-MART	transcript	387788	388726	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:15144:17986#0--HWUSI-EAS1656_0009_FC:3:9:8581:10227#0--HWUSI-EAS1656_000;p_id=P801;gene_id=YHR144C;tss_id=TSS1132;nbOverlaps=32;ID=YHR144C;Name=DCD1
VIII	S-MART	transcript	390300	391697	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:78:6636:7228#0--HWUSI-EAS1656_0009_FC:3:68:5778:9010#0--HWUSI-EAS1656_0009_F;p_id=P1484;gene_id=YHR146W;tss_id=TSS2752;nbOverlaps=387;ID=YHR146W;Name=CRP1
Mito	S-MART	transcript	51052	51228	.	+	.	seqedit=false;p_id=P2411;gene_id=Q0142;tss_id=TSS3147;nbOverlaps=0;ID=Q0142;Name=Q0142
VIII	S-MART	transcript	388981	389337	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:61:17613:18115#0--HWUSI-EAS1656_0009_FC:3:65:8521:14869#0--HWUSI-EAS1656_000;p_id=P4490;gene_id=YHR145C;tss_id=TSS5264;nbOverlaps=1015;ID=YHR145C;Name=YHR145C
VIII	S-MART	transcript	392639	393283	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:17906:7236#0--HWUSI-EAS1656_0009_FC:3:23:8121:6734#0--HWUSI-EAS1656_0009;p_id=P4394;gene_id=YHR147C;tss_id=TSS356;nbOverlaps=123;ID=YHR147C;Name=MRPL6
VI	S-MART	transcript	55366	55986	.	-	.	seqedit=false;p_id=P279;gene_id=YFL038C;tss_id=TSS4602;nbOverlaps=0;ID=YFL038C;Name=YPT1
VIII	S-MART	transcript	393534	394085	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:6661:14626#0--HWUSI-EAS1656_0009_FC:3:60:2730:19112#0--HWUSI-EAS1656_000;p_id=P2584;gene_id=YHR148W;tss_id=TSS4864;nbOverlaps=149;ID=YHR148W;Name=IMP3
VIII	S-MART	transcript	394455	396659	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18425:20864#0--HWUSI-EAS1656_0009_FC:3:35:4695:8446#0--HWUSI-EAS1656_0009;p_id=P3554;gene_id=YHR149C;tss_id=TSS485;nbOverlaps=226;ID=YHR149C;Name=SKG6
XIV	S-MART	transcript	631263	631481	.	+	.	seqedit=false;p_id=P306;gene_id=YNR001W-A;tss_id=TSS3977;nbOverlaps=0;ID=YNR001W-A;Name=YNR001W-A
VIII	S-MART	transcript	170799	172970	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:32:3371:14096#0--HWUSI-EAS1656_0009_FC:3:10:13649:19353#0--HWUSI-EAS1656_000;p_id=P1685;gene_id=YHR031C;tss_id=TSS3846;nbOverlaps=117;ID=YHR031C;Name=RRM3
VIII	S-MART	transcript	397251	398990	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:6255:16484#0--HWUSI-EAS1656_0009_FC:3:103:17193:18887#0--HWUSI-EAS1656_0;p_id=P2128;gene_id=YHR150W;tss_id=TSS5561;nbOverlaps=112;ID=YHR150W;Name=PEX28
VIII	S-MART	transcript	399268	400848	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:16337:19802#0--HWUSI-EAS1656_0009_FC:3:85:16420:20347#0--HWUSI-EAS1656_00;p_id=P817;gene_id=YHR151C;tss_id=TSS2267;nbOverlaps=189;ID=YHR151C;Name=MTC6
Mito	S-MART	transcript	51277	51429	.	+	.	seqedit=false;p_id=P4090;gene_id=Q0143;tss_id=TSS60;nbOverlaps=0;ID=Q0143;Name=Q0143
VIII	S-MART	transcript	401434	401955	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:15993:3298#0--HWUSI-EAS1656_0009_FC:3:62:16992:11536#0--HWUSI-EAS1656_000;p_id=P5730;gene_id=YHR152W;tss_id=TSS6967;nbOverlaps=39;ID=YHR152W;Name=SPO12
VIII	S-MART	transcript	402086	402682	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:8863:16662#0--HWUSI-EAS1656_0009_FC:3:3:7765:14294#0--HWUSI-EAS1656_0009_;p_id=P2452;gene_id=YHR153C;tss_id=TSS2463;nbOverlaps=17;ID=YHR153C;Name=SPO16
VI	S-MART	transcript	53260	54696	.	-	.	seqedit=false;p_id=P6005;gene_id=YFL039C;tss_id=TSS1280;nbOverlaps=0;ID=YFL039C;Name=ACT1
VI	S-MART	exon	53260	54377	.	-	.	ID=YFL039C-exon1;Name=ACT1-exon1;Parent=YFL039C
VI	S-MART	exon	54687	54696	.	-	.	ID=YFL039C-exon2;Name=ACT1-exon2;Parent=YFL039C
VIII	S-MART	transcript	402966	406178	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:64:2023:19987#0--HWUSI-EAS1656_0009_FC:3:79:11751:20101#0--HWUSI-EAS1656_000;p_id=P941;gene_id=YHR154W;tss_id=TSS4888;nbOverlaps=134;ID=YHR154W;Name=RTT107
VIII	S-MART	transcript	407103	410789	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:33:2671:17351#0--HWUSI-EAS1656_0009_FC:3:72:7521:4987#0--HWUSI-EAS1656_0009_;p_id=P4814;gene_id=YHR155W;tss_id=TSS232;nbOverlaps=263;ID=YHR155W;Name=YSP1
I	S-MART	transcript	83335	84474	.	-	.	seqedit=false;p_id=P4198;gene_id=YAL032C;tss_id=TSS471;nbOverlaps=0;ID=YAL032C;Name=PRP45
VIII	S-MART	transcript	411384	412406	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:19575:17971#0--HWUSI-EAS1656_0009_FC:3:100:10390:10225#0--HWUSI-EAS1656_0;p_id=P256;gene_id=YHR156C;tss_id=TSS6648;nbOverlaps=53;ID=YHR156C;Name=LIN1
VIII	S-MART	transcript	412907	413455	.	+	.	seqedit=false;p_id=P4210;gene_id=YHR157W;tss_id=TSS2168;nbOverlaps=0;ID=YHR157W;Name=REC104
Mito	S-MART	transcript	54109	54438	.	+	.	seqedit=false;p_id=P1601;gene_id=Q0144;tss_id=TSS2381;nbOverlaps=0;ID=Q0144;Name=Q0144
VIII	S-MART	transcript	413685	417179	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:11227:15728#0--HWUSI-EAS1656_0009_FC:3:99:5573:16428#0--HWUSI-EAS1656_0009;p_id=P420;gene_id=YHR158C;tss_id=TSS3491;nbOverlaps=203;ID=YHR158C;Name=KEL1
VIII	S-MART	transcript	417549	419063	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:2019:16573#0--HWUSI-EAS1656_0009_FC:3:14:11628:20995#0--HWUSI-EAS1656_000;p_id=P6178;gene_id=YHR159W;tss_id=TSS530;nbOverlaps=55;ID=YHR159W;Name=TDA11
XIV	S-MART	transcript	172588	174315	.	-	.	seqedit=false;p_id=P4779;gene_id=YNL251C;tss_id=TSS30;nbOverlaps=0;ID=YNL251C;Name=NRD1
VIII	S-MART	transcript	419221	420072	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:15248:18290#0--HWUSI-EAS1656_0009_FC:3:63:11090:15425#0--HWUSI-EAS1656_00;p_id=P1728;gene_id=YHR160C;tss_id=TSS3073;nbOverlaps=15;ID=YHR160C;Name=PEX18
VIII	S-MART	transcript	538742	538945	.	+	.	seqedit=false;p_id=P6001;gene_id=YHR212W-A;tss_id=TSS3546;nbOverlaps=0;ID=YHR212W-A;Name=YHR212W-A
I	S-MART	transcript	82706	83227	.	+	.	seqedit=false;p_id=P3879;gene_id=YAL033W;tss_id=TSS6289;nbOverlaps=0;ID=YAL033W;Name=POP5
V	S-MART	transcript	191959	192624	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:1682:9333#0--HWUSI-EAS1656_0009_FC:3:79:17875:15288#0--HWUSI-EAS1656_0009;p_id=P2997;gene_id=YER018C;tss_id=TSS4288;nbOverlaps=85;ID=YER018C;Name=SPC25
V	S-MART	transcript	194273	194539	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:4859:1234#0--HWUSI-EAS1656_0009_FC:3:97:5195:13817#0--HWUSI-EAS1656_0009;p_id=P6359;gene_id=YER019C-A;tss_id=TSS1987;nbOverlaps=1024;ID=YER019C-A;Name=SBH2
V	S-MART	transcript	192797	194230	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:111:11939:4260#0--HWUSI-EAS1656_0009_FC:3:82:1766:14366#0--HWUSI-EAS1656_000;p_id=P2280;gene_id=YER019W;tss_id=TSS6963;nbOverlaps=383;ID=YER019W;Name=ISC1
XIV	S-MART	transcript	467131	469623	.	+	.	seqedit=false;p_id=P2430;gene_id=YNL085W;tss_id=TSS1954;nbOverlaps=0;ID=YNL085W;Name=MKT1
V	S-MART	transcript	195168	196517	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:9563:15295#0--HWUSI-EAS1656_0009_FC:3:32:14066:10929#0--HWUSI-EAS1656_000;p_id=P6549;gene_id=YER020W;tss_id=TSS5877;nbOverlaps=76;ID=YER020W;Name=GPA2
V	S-MART	transcript	196948	198519	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:5088:15888#0--HWUSI-EAS1656_0009_FC:3:93:18364:7838#0--HWUSI-EAS1656_000;p_id=P738;gene_id=YER021W;tss_id=TSS5115;nbOverlaps=1347;ID=YER021W;Name=RPN3
I	S-MART	transcript	80710	81951	.	-	.	seqedit=false;p_id=P3277;gene_id=YAL034C;tss_id=TSS6013;nbOverlaps=0;ID=YAL034C;Name=FUN19
V	S-MART	transcript	198812	200875	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:98:15400:14815#0--HWUSI-EAS1656_0009_FC:3:28:15724:9239#0--HWUSI-EAS1656_000;p_id=P4681;gene_id=YER022W;tss_id=TSS519;nbOverlaps=100;ID=YER022W;Name=SRB4
V	S-MART	transcript	201522	201734	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:7999:8532#0--HWUSI-EAS1656_0009_FC:3:30:12672:4926#0--HWUSI-EAS1656_0009_F;p_id=P6447;gene_id=YER023C-A;tss_id=TSS6955;nbOverlaps=596;ID=YER023C-A;Name=YER023C-A
V	S-MART	transcript	201076	201936	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:12672:4926#0--HWUSI-EAS1656_0009_FC:3:118:15778:18857#0--HWUSI-EAS1656_00;p_id=P289;gene_id=YER023W;tss_id=TSS2179;nbOverlaps=2227;ID=YER023W;Name=PRO3
V	S-MART	transcript	202192	204963	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:80:4954:15301#0--HWUSI-EAS1656_0009_FC:3:91:11761:20304#0--HWUSI-EAS1656_000;p_id=P4963;gene_id=YER024W;tss_id=TSS2727;nbOverlaps=143;ID=YER024W;Name=YAT2
VI	S-MART	transcript	49139	51007	.	+	.	seqedit=false;p_id=P3856;gene_id=YFL041W;tss_id=TSS4556;nbOverlaps=0;ID=YFL041W;Name=FET5
V	S-MART	transcript	205251	206834	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:2:18661:2453#0--HWUSI-EAS1656_0009_FC:3:9:9275:4106#0--HWUSI-EAS1656_0009_FC;p_id=P4652;gene_id=YER025W;tss_id=TSS6317;nbOverlaps=2071;ID=YER025W;Name=GCD11
XII	S-MART	transcript	759480	760241	.	+	.	seqedit=false;p_id=P1067;gene_id=YLR312W-A;tss_id=TSS1382;nbOverlaps=0;ID=YLR312W-A;Name=MRPL15
V	S-MART	transcript	207644	208474	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:32:2713:20996#0--HWUSI-EAS1656_0009_FC:3:61:1827:14518#0--HWUSI-EAS1656_0009;p_id=P4552;gene_id=YER026C;tss_id=TSS238;nbOverlaps=1973;ID=YER026C;Name=CHO1
I	S-MART	transcript	79489	79842	.	-	.	seqedit=false;p_id=P4740;gene_id=YAL034C-B;tss_id=TSS4690;nbOverlaps=0;ID=YAL034C-B;Name=YAL034C-B
V	S-MART	transcript	208979	210232	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:39:2027:3339#0--HWUSI-EAS1656_0009_FC:3:20:4822:3644#0--HWUSI-EAS1656_0009_F;p_id=P4258;gene_id=YER027C;tss_id=TSS2639;nbOverlaps=193;ID=YER027C;Name=GAL83
V	S-MART	transcript	210692	211876	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:5842:4577#0--HWUSI-EAS1656_0009_FC:3:60:12164:3094#0--HWUSI-EAS1656_0009_;p_id=P6405;gene_id=YER028C;tss_id=TSS351;nbOverlaps=34;ID=YER028C;Name=MIG3
V	S-MART	transcript	212587	213177	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:14538:16403#0--HWUSI-EAS1656_0009_FC:3:65:17717:10434#0--HWUSI-EAS1656_00;p_id=P4967;gene_id=YER029C;tss_id=TSS2580;nbOverlaps=26;ID=YER029C;Name=SMB1
V	S-MART	transcript	213437	213898	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:102:3758:11310#0--HWUSI-EAS1656_0009_FC:3:37:12076:12640#0--HWUSI-EAS1656_00;p_id=P4244;gene_id=YER030W;tss_id=TSS2188;nbOverlaps=35;ID=YER030W;Name=CHZ1
XIV	S-MART	transcript	462411	465947	.	+	.	seqedit=false;p_id=P5493;gene_id=YNL087W;tss_id=TSS5820;nbOverlaps=0;ID=YNL087W;Name=TCB2
V	S-MART	transcript	214076	214747	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:44:6137:9397#0--HWUSI-EAS1656_0009_FC:3:28:15284:2255#0--HWUSI-EAS1656_0009_;p_id=P3529;gene_id=YER031C;tss_id=TSS6270;nbOverlaps=426;ID=YER031C;Name=YPT31
V	S-MART	transcript	215063	217693	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:17207:12066#0--HWUSI-EAS1656_0009_FC:3:35:1438:4749#0--HWUSI-EAS1656_000;p_id=P5736;gene_id=YER032W;tss_id=TSS723;nbOverlaps=76;ID=YER032W;Name=FIR1
I	S-MART	transcript	79718	80587	.	+	.	seqedit=false;p_id=P2718;gene_id=YAL034W-A;tss_id=TSS5796;nbOverlaps=0;ID=YAL034W-A;Name=MTW1
V	S-MART	transcript	218057	221287	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:2830:9725#0--HWUSI-EAS1656_0009_FC:3:20:3315:19370#0--HWUSI-EAS1656_0009_;p_id=P1806;gene_id=YER033C;tss_id=TSS6660;nbOverlaps=53;ID=YER033C;Name=ZRG8
V	S-MART	transcript	222639	223076	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:63:7757:16193#0--HWUSI-EAS1656_0009_FC:3:93:15181:19042#0--HWUSI-EAS1656_000;p_id=P623;gene_id=YER035W;tss_id=TSS2621;nbOverlaps=18;ID=YER035W;Name=EDC2
V	S-MART	transcript	221846	222403	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:9447:1207#0--HWUSI-EAS1656_0009_FC:3:83:8588:6003#0--HWUSI-EAS1656_0009_F;p_id=P6003;gene_id=YER034W;tss_id=TSS6301;nbOverlaps=17;ID=YER034W;Name=YER034W
V	S-MART	transcript	223367	225199	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:16512:1524#0--HWUSI-EAS1656_0009_FC:3:23:18985:14980#0--HWUSI-EAS1656_000;p_id=P6211;gene_id=YER036C;tss_id=TSS5485;nbOverlaps=2711;ID=YER036C;Name=ARB1
VI	S-MART	transcript	48734	48925	.	+	.	seqedit=false;p_id=P1400;gene_id=YFL041W-A;tss_id=TSS841;nbOverlaps=0;ID=YFL041W-A;Name=YFL041W-A
V	S-MART	transcript	225889	226854	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:4447:10176#0--HWUSI-EAS1656_0009_FC:3:1:13781:1514#0--HWUSI-EAS1656_0009_F;p_id=P3164;gene_id=YER037W;tss_id=TSS3640;nbOverlaps=39;ID=YER037W;Name=PHM8
V	S-MART	transcript	226858	228252	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:19734:13522#0--HWUSI-EAS1656_0009_FC:3:69:18141:6937#0--HWUSI-EAS1656_000;p_id=P3042;gene_id=YER038C;tss_id=TSS2467;nbOverlaps=83;ID=YER038C;Name=KRE29
VIII	S-MART	transcript	180345	181760	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:16829:13512#0--HWUSI-EAS1656_0009_FC:3:75:12965:19032#0--HWUSI-EAS1656_00;p_id=P352;gene_id=YHR036W;tss_id=TSS161;nbOverlaps=69;ID=YHR036W;Name=BRL1
V	S-MART	transcript	228451	228831	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:2415:16631#0--HWUSI-EAS1656_0009_FC:3:8:10890:18366#0--HWUSI-EAS1656_0009;p_id=P4026;gene_id=YER038W-A;tss_id=TSS758;nbOverlaps=22;ID=YER038W-A;Name=YER038W-A
V	S-MART	transcript	228456	229205	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:2415:16631#0--HWUSI-EAS1656_0009_FC:3:8:10890:18366#0--HWUSI-EAS1656_0009;p_id=P5051;gene_id=YER039C;tss_id=TSS3392;nbOverlaps=56;ID=YER039C;Name=HVG1
V	S-MART	transcript	229263	229481	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17736:12813#0--HWUSI-EAS1656_0009_FC:3:90:7122:11033#0--HWUSI-EAS1656_000;p_id=P3366;gene_id=YER039C-A;tss_id=TSS3076;nbOverlaps=21;ID=YER039C-A;Name=YER039C-A
V	S-MART	transcript	229795	231987	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:1:9618:11875#0--HWUSI-EAS1656_0009_FC:3:51:7844:16338#0--HWUSI-EAS1656_0009_;p_id=P6293;gene_id=YER040W;tss_id=TSS3461;nbOverlaps=107;ID=YER040W;Name=GLN3
XIV	S-MART	transcript	164623	167097	.	+	.	seqedit=false;p_id=P3081;gene_id=YNL256W;tss_id=TSS3582;nbOverlaps=0;ID=YNL256W;Name=FOL1
V	S-MART	transcript	232461	234740	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:9666:11344#0--HWUSI-EAS1656_0009_FC:3:105:15666:19459#0--HWUSI-EAS1656_00;p_id=P3709;gene_id=YER041W;tss_id=TSS3436;nbOverlaps=39;ID=YER041W;Name=YEN1
V	S-MART	transcript	234937	235491	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:6743:1674#0--HWUSI-EAS1656_0009_FC:3:60:16730:13520#0--HWUSI-EAS1656_0009;p_id=P5886;gene_id=YER042W;tss_id=TSS910;nbOverlaps=386;ID=YER042W;Name=MXR1
VIII	S-MART	transcript	178219	180111	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:17899:6242#0--HWUSI-EAS1656_0009_FC:3:62:14093:1628#0--HWUSI-EAS1656_000;p_id=P3738;gene_id=YHR035W;tss_id=TSS1018;nbOverlaps=32;ID=YHR035W;Name=YHR035W
V	S-MART	transcript	235770	237119	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:7922:10372#0--HWUSI-EAS1656_0009_FC:3:7:7278:19984#0--HWUSI-EAS1656_0009_;p_id=P4843;gene_id=YER043C;tss_id=TSS6798;nbOverlaps=6844;ID=YER043C;Name=SAH1
V	S-MART	transcript	237570	238016	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:43:12576:4955#0--HWUSI-EAS1656_0009_FC:3:16:6272:4947#0--HWUSI-EAS1656_0009_;p_id=P1198;gene_id=YER044C;tss_id=TSS5083;nbOverlaps=109;ID=YER044C;Name=ERG28
V	S-MART	transcript	238460	239774	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:14276:15398#0--HWUSI-EAS1656_0009_FC:3:15:16490:14209#0--HWUSI-EAS1656_000;p_id=P5629;gene_id=YER044C-A;tss_id=TSS1870;nbOverlaps=15;ID=YER044C-A;Name=MEI4
V	S-MART	exon	238460	239623	.	-	.	ID=YER044C-A-exon1;Name=MEI4-exon1;Parent=YER044C-A
V	S-MART	exon	239712	239774	.	-	.	ID=YER044C-A-exon2;Name=MEI4-exon2;Parent=YER044C-A
XVI	S-MART	transcript	799234	802017	.	+	.	seqedit=false;p_id=P3591;gene_id=YPR135W;tss_id=TSS2661;nbOverlaps=0;ID=YPR135W;Name=CTF4
VI	S-MART	transcript	45720	47744	.	-	.	seqedit=false;p_id=P1378;gene_id=YFL042C;tss_id=TSS2280;nbOverlaps=0;ID=YFL042C;Name=YFL042C
XVI	S-MART	transcript	808947	810269	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P4344;gene_id=YPR137C-A;tss_id=TSS5470;nbOverlaps=31;ID=YPR137C-A;Name=YPR137C-A
V	S-MART	transcript	240032	241501	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:43:3378:3301#0--HWUSI-EAS1656_0009_FC:3:111:9185:1145#0--HWUSI-EAS1656_0009_;p_id=P121;gene_id=YER045C;tss_id=TSS3309;nbOverlaps=40;ID=YER045C;Name=ACA1
VIII	S-MART	transcript	181977	183704	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:5326:3550#0--HWUSI-EAS1656_0009_FC:3:18:8920:9061#0--HWUSI-EAS1656_0009_FC;p_id=P6116;gene_id=YHR037W;tss_id=TSS5117;nbOverlaps=286;ID=YHR037W;Name=PUT2
V	S-MART	transcript	243180	243611	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:5607:16464#0--HWUSI-EAS1656_0009_FC:3:105:2083:13126#0--HWUSI-EAS1656_000;p_id=P6294;gene_id=YER046W;tss_id=TSS3160;nbOverlaps=25;ID=YER046W;Name=SPO73
V	S-MART	transcript	243700	244029	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:19093:11362#0--HWUSI-EAS1656_0009_FC:3:54:14672:16972#0--HWUSI-EAS1656_000;p_id=P2951;gene_id=YER046W-A;tss_id=TSS860;nbOverlaps=33;ID=YER046W-A;Name=YER046W-A
V	S-MART	transcript	243810	246503	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:14891:10973#0--HWUSI-EAS1656_0009_FC:3:20:5401:7472#0--HWUSI-EAS1656_0009;p_id=P2741;gene_id=YER047C;tss_id=TSS393;nbOverlaps=120;ID=YER047C;Name=SAP1
V	S-MART	transcript	246982	248157	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:7030:15964#0--HWUSI-EAS1656_0009_FC:3:32:7582:12924#0--HWUSI-EAS1656_0009;p_id=P4995;gene_id=YER048C;tss_id=TSS4529;nbOverlaps=350;ID=YER048C;Name=CAJ1
XIII	S-MART	transcript	628189	628785	.	+	.	seqedit=false;p_id=P3519;gene_id=YMR184W;tss_id=TSS4597;nbOverlaps=0;ID=YMR184W;Name=ADD37
VI	S-MART	transcript	43628	44392	.	-	.	seqedit=false;p_id=P5482;gene_id=YFL045C;tss_id=TSS3610;nbOverlaps=0;ID=YFL045C;Name=SEC53
V	S-MART	transcript	250718	251002	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:10191:13583#0--HWUSI-EAS1656_0009_FC:3:86:12841:8799#0--HWUSI-EAS1656_00;p_id=P2595;gene_id=YER048W-A;tss_id=TSS1816;nbOverlaps=251;ID=YER048W-A;Name=ISD11
XII	S-MART	transcript	757265	757612	.	-	.	seqedit=false;p_id=P705;gene_id=YLR311C;tss_id=TSS6244;nbOverlaps=0;ID=YLR311C;Name=YLR311C
V	S-MART	transcript	251728	253662	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:14962:7730#0--HWUSI-EAS1656_0009_FC:3:101:13278:7586#0--HWUSI-EAS1656_000;p_id=P5946;gene_id=YER049W;tss_id=TSS3728;nbOverlaps=1837;ID=YER049W;Name=TPA1
I	S-MART	transcript	72326	73300	.	-	.	seqedit=false;p_id=P906;gene_id=YAL037C-B;tss_id=TSS4236;nbOverlaps=0;ID=YAL037C-B;Name=YAL037C-B
V	S-MART	transcript	253971	254387	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:2746:2184#0--HWUSI-EAS1656_0009_FC:3:37:16658:3851#0--HWUSI-EAS1656_0009_;p_id=P4271;gene_id=YER050C;tss_id=TSS5655;nbOverlaps=81;ID=YER050C;Name=RSM18
V	S-MART	transcript	254656	256134	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:44:5219:6764#0--HWUSI-EAS1656_0009_FC:3:64:6750:1977#0--HWUSI-EAS1656_0009_F;p_id=P210;gene_id=YER051W;tss_id=TSS6076;nbOverlaps=95;ID=YER051W;Name=JHD1
V	S-MART	transcript	256375	257958	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:13049:5085#0--HWUSI-EAS1656_0009_FC:3:52:18291:15077#0--HWUSI-EAS1656_000;p_id=P2904;gene_id=YER052C;tss_id=TSS5860;nbOverlaps=595;ID=YER052C;Name=HOM3
V	S-MART	transcript	258737	259639	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:6146:6539#0--HWUSI-EAS1656_0009_FC:3:100:16285:14507#0--HWUSI-EAS1656_00;p_id=P6089;gene_id=YER053C;tss_id=TSS2183;nbOverlaps=29;ID=YER053C;Name=PIC2
VI	S-MART	transcript	42815	43438	.	+	.	seqedit=false;p_id=P6152;gene_id=YFL046W;tss_id=TSS5032;nbOverlaps=0;ID=YFL046W;Name=FMP32
V	S-MART	transcript	260933	261046	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:12354:4388#0--HWUSI-EAS1656_0009_FC:3:56:19676:13256#0--HWUSI-EAS1656_0009;p_id=P3007;gene_id=YER053C-A;tss_id=TSS4176;nbOverlaps=5;ID=YER053C-A;Name=YER053C-A
V	S-MART	transcript	262052	263698	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:72:15549:12953#0--HWUSI-EAS1656_0009_FC:3:116:3924:16795#0--HWUSI-EAS1656_00;p_id=P100;gene_id=YER054C;tss_id=TSS2599;nbOverlaps=17;ID=YER054C;Name=GIP2
VIII	S-MART	transcript	184875	186809	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:10829:20198#0--HWUSI-EAS1656_0009_FC:3:114:1713:2291#0--HWUSI-EAS1656_000;p_id=P5119;gene_id=YHR039C;tss_id=TSS5818;nbOverlaps=627;ID=YHR039C;Name=MSC7
V	S-MART	transcript	264892	265785	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:14071:20235#0--HWUSI-EAS1656_0009_FC:3:119:4065:8386#0--HWUSI-EAS1656_000;p_id=P3005;gene_id=YER055C;tss_id=TSS620;nbOverlaps=2097;ID=YER055C;Name=HIS1
V	S-MART	transcript	266512	268113	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:3843:21148#0--HWUSI-EAS1656_0009_FC:3:85:17688:19655#0--HWUSI-EAS1656_000;p_id=P5413;gene_id=YER056C;tss_id=TSS6446;nbOverlaps=3605;ID=YER056C;Name=FCY2
V	S-MART	transcript	269423	270185	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:5653:14852#0--HWUSI-EAS1656_0009_FC:3:60:8267:14030#0--HWUSI-EAS1656_000;p_id=P6557;gene_id=YER056C-A;tss_id=TSS4562;nbOverlaps=1052;ID=YER056C-A;Name=RPL34A
V	S-MART	exon	269423	269751	.	-	.	ID=YER056C-A-exon1;Name=RPL34A-exon1;Parent=YER056C-A
V	S-MART	exon	270149	270185	.	-	.	ID=YER056C-A-exon2;Name=RPL34A-exon2;Parent=YER056C-A
XVI	S-MART	transcript	825645	826559	.	-	.	seqedit=false;p_id=P1480;gene_id=YPR147C;tss_id=TSS1072;nbOverlaps=0;ID=YPR147C;Name=YPR147C
VI	S-MART	transcript	40421	42565	.	+	.	seqedit=false;p_id=P139;gene_id=YFL047W;tss_id=TSS1686;nbOverlaps=0;ID=YFL047W;Name=RGD2
XVI	S-MART	transcript	826833	828140	.	-	.	seqedit=false;p_id=P4978;gene_id=YPR148C;tss_id=TSS2572;nbOverlaps=0;ID=YPR148C;Name=YPR148C
V	S-MART	transcript	270737	271126	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17525:18880#0--HWUSI-EAS1656_0009_FC:3:68:2135:18208#0--HWUSI-EAS1656_000;p_id=P356;gene_id=YER057C;tss_id=TSS754;nbOverlaps=154;ID=YER057C;Name=HMF1
I	S-MART	transcript	74020	74823	.	+	.	seqedit=false;p_id=P6537;gene_id=YAL037W;tss_id=TSS5088;nbOverlaps=0;ID=YAL037W;Name=YAL037W
V	S-MART	transcript	271768	272091	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:10077:18666#0--HWUSI-EAS1656_0009_FC:3:13:1144:4998#0--HWUSI-EAS1656_0009_;p_id=P5764;gene_id=YER058W;tss_id=TSS4713;nbOverlaps=9;ID=YER058W;Name=PET117
V	S-MART	transcript	272624	273886	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:14083:5180#0--HWUSI-EAS1656_0009_FC:3:81:13023:13951#0--HWUSI-EAS1656_00;p_id=P429;gene_id=YER059W;tss_id=TSS631;nbOverlaps=44;ID=YER059W;Name=PCL6
V	S-MART	transcript	274567	276153	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:9353:8698#0--HWUSI-EAS1656_0009_FC:3:34:17173:8004#0--HWUSI-EAS1656_0009_;p_id=P4810;gene_id=YER060W;tss_id=TSS2011;nbOverlaps=221;ID=YER060W;Name=FCY21
V	S-MART	transcript	276572	278164	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:17034:14039#0--HWUSI-EAS1656_0009_FC:3:55:16223:19536#0--HWUSI-EAS1656_0;p_id=P83;gene_id=YER060W-A;tss_id=TSS6875;nbOverlaps=250;ID=YER060W-A;Name=FCY22
VI	S-MART	transcript	38843	40180	.	-	.	seqedit=false;p_id=P4694;gene_id=YFL048C;tss_id=TSS6606;nbOverlaps=0;ID=YFL048C;Name=EMP47
XVI	S-MART	transcript	567269	568996	.	-	.	seqedit=false;p_id=P3870;gene_id=YPR006C;tss_id=TSS3278;nbOverlaps=0;ID=YPR006C;Name=ICL2
V	S-MART	transcript	278298	279626	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:18930:4450#0--HWUSI-EAS1656_0009_FC:3:67:6335:7061#0--HWUSI-EAS1656_0009_;p_id=P3655;gene_id=YER061C;tss_id=TSS5528;nbOverlaps=162;ID=YER061C;Name=CEM1
V	S-MART	transcript	279930	280682	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:19126:17454#0--HWUSI-EAS1656_0009_FC:3:97:2773:3532#0--HWUSI-EAS1656_0009_;p_id=P5015;gene_id=YER062C;tss_id=TSS2633;nbOverlaps=147;ID=YER062C;Name=HOR2
I	S-MART	transcript	68716	69525	.	-	.	seqedit=false;p_id=P4193;gene_id=YAL039C;tss_id=TSS4198;nbOverlaps=0;ID=YAL039C;Name=CYC3
V	S-MART	transcript	281710	282366	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:15031:16742#0--HWUSI-EAS1656_0009_FC:3:10:7480:18285#0--HWUSI-EAS1656_000;p_id=P812;gene_id=YER063W;tss_id=TSS1887;nbOverlaps=62;ID=YER063W;Name=THO1
V	S-MART	transcript	285241	286914	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:14944:14421#0--HWUSI-EAS1656_0009_FC:3:111:6325:8478#0--HWUSI-EAS1656_000;p_id=P3080;gene_id=YER065C;tss_id=TSS1695;nbOverlaps=197;ID=YER065C;Name=ICL1
V	S-MART	transcript	282705	284222	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:8053:10602#0--HWUSI-EAS1656_0009_FC:3:15:17698:16602#0--HWUSI-EAS1656_000;p_id=P6429;gene_id=YER064C;tss_id=TSS660;nbOverlaps=158;ID=YER064C;Name=YER064C
V	S-MART	transcript	291703	292203	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:16071:10291#0--HWUSI-EAS1656_0009_FC:3:79:7799:5498#0--HWUSI-EAS1656_0009;p_id=P2518;gene_id=YER066C-A;tss_id=TSS4266;nbOverlaps=3;ID=YER066C-A;Name=YER066C-A
VI	S-MART	transcript	36803	38674	.	+	.	seqedit=false;p_id=P6231;gene_id=YFL049W;tss_id=TSS3323;nbOverlaps=0;ID=YFL049W;Name=SWP82
XI	S-MART	transcript	463959	464948	.	+	.	seqedit=false;p_id=P3355;gene_id=YKR013W;tss_id=TSS688;nbOverlaps=0;ID=YKR013W;Name=PRY2
XI	S-MART	transcript	461635	462696	.	-	.	seqedit=false;p_id=P5008;gene_id=YKR011C;tss_id=TSS6136;nbOverlaps=0;ID=YKR011C;Name=YKR011C
XI	S-MART	transcript	463739	464116	.	-	.	seqedit=false;p_id=P786;gene_id=YKR012C;tss_id=TSS3310;nbOverlaps=0;ID=YKR012C;Name=YKR012C
XI	S-MART	transcript	465367	466071	.	-	.	seqedit=false;p_id=P2612;gene_id=YKR014C;tss_id=TSS5207;nbOverlaps=0;ID=YKR014C;Name=YPT52
XI	S-MART	transcript	469717	471339	.	+	.	seqedit=false;p_id=P3179;gene_id=YKR016W;tss_id=TSS4013;nbOverlaps=0;ID=YKR016W;Name=FCJ1
VI	S-MART	transcript	33272	35848	.	-	.	seqedit=false;p_id=P4561;gene_id=YFL050C;tss_id=TSS2300;nbOverlaps=0;ID=YFL050C;Name=ALR2
XI	S-MART	transcript	466961	468667	.	-	.	seqedit=false;p_id=P5847;gene_id=YKR015C;tss_id=TSS1278;nbOverlaps=0;ID=YKR015C;Name=YKR015C
XII	S-MART	transcript	757637	758833	.	-	.	seqedit=false;p_id=P3149;gene_id=YLR312C;tss_id=TSS3286;nbOverlaps=0;ID=YLR312C;Name=YLR312C
XI	S-MART	transcript	476216	478063	.	-	.	seqedit=false;p_id=P6430;gene_id=YKR019C;tss_id=TSS290;nbOverlaps=0;ID=YKR019C;Name=IRS4
VIII	S-MART	transcript	187924	189024	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:4608:6506#0--HWUSI-EAS1656_0009_FC:3:60:11630:1115#0--HWUSI-EAS1656_0009_;p_id=P1655;gene_id=YHR040W;tss_id=TSS6450;nbOverlaps=61;ID=YHR040W;Name=BCD1
XI	S-MART	transcript	471694	473349	.	-	.	seqedit=false;p_id=P2334;gene_id=YKR017C;tss_id=TSS2518;nbOverlaps=0;ID=YKR017C;Name=YKR017C
XI	S-MART	transcript	473723	475900	.	-	.	seqedit=false;p_id=P1308;gene_id=YKR018C;tss_id=TSS6932;nbOverlaps=0;ID=YKR018C;Name=YKR018C
XI	S-MART	transcript	478338	478832	.	+	.	seqedit=false;p_id=P2937;gene_id=YKR020W;tss_id=TSS3680;nbOverlaps=0;ID=YKR020W;Name=VPS51
XI	S-MART	transcript	479234	481981	.	+	.	seqedit=false;p_id=P4565;gene_id=YKR021W;tss_id=TSS2584;nbOverlaps=0;ID=YKR021W;Name=ALY1
VI	S-MART	transcript	23423	25198	.	+	.	seqedit=false;p_id=P3310;gene_id=YFL053W;tss_id=TSS2921;nbOverlaps=0;ID=YFL053W;Name=DAK2
XI	S-MART	transcript	482171	483139	.	-	.	seqedit=false;p_id=P6281;gene_id=YKR022C;tss_id=TSS4879;nbOverlaps=0;ID=YKR022C;Name=NTR2
XI	S-MART	transcript	485144	487372	.	-	.	seqedit=false;p_id=P95;gene_id=YKR024C;tss_id=TSS7038;nbOverlaps=0;ID=YKR024C;Name=DBP7
XIII	S-MART	transcript	651145	651910	.	+	.	seqedit=false;p_id=P1589;gene_id=YMR194W;tss_id=TSS2684;nbOverlaps=0;ID=YMR194W;Name=RPL36A
XIII	S-MART	exon	651145	651160	.	+	.	ID=YMR194W-exon1;Name=RPL36A-exon1;Parent=YMR194W
XIII	S-MART	exon	651624	651910	.	+	.	ID=YMR194W-exon2;Name=RPL36A-exon2;Parent=YMR194W
XI	S-MART	transcript	483419	485011	.	+	.	seqedit=false;p_id=P5739;gene_id=YKR023W;tss_id=TSS6785;nbOverlaps=0;ID=YKR023W;Name=YKR023W
XI	S-MART	transcript	487770	488618	.	+	.	seqedit=false;p_id=P581;gene_id=YKR025W;tss_id=TSS6843;nbOverlaps=0;ID=YKR025W;Name=RPC37
XI	S-MART	transcript	488738	489655	.	-	.	seqedit=false;p_id=P3754;gene_id=YKR026C;tss_id=TSS5123;nbOverlaps=0;ID=YKR026C;Name=GCN3
XI	S-MART	transcript	491364	493661	.	+	.	seqedit=false;p_id=P4757;gene_id=YKR027W;tss_id=TSS2139;nbOverlaps=0;ID=YKR027W;Name=BCH2
XIV	S-MART	transcript	144280	145281	.	-	.	seqedit=false;p_id=P342;gene_id=YNL265C;tss_id=TSS1219;nbOverlaps=0;ID=YNL265C;Name=IST1
XIV	S-MART	exon	144280	145149	.	-	.	ID=YNL265C-exon1;Name=IST1-exon1;Parent=YNL265C
XIV	S-MART	exon	145255	145281	.	-	.	ID=YNL265C-exon2;Name=IST1-exon2;Parent=YNL265C
XI	S-MART	transcript	494257	497358	.	+	.	seqedit=false;p_id=P399;gene_id=YKR028W;tss_id=TSS3981;nbOverlaps=0;ID=YKR028W;Name=SAP190
XI	S-MART	transcript	497578	499833	.	-	.	seqedit=false;p_id=P2802;gene_id=YKR029C;tss_id=TSS4561;nbOverlaps=0;ID=YKR029C;Name=SET3
XI	S-MART	transcript	500282	501103	.	+	.	seqedit=false;p_id=P1528;gene_id=YKR030W;tss_id=TSS3200;nbOverlaps=0;ID=YKR030W;Name=GMH1
XI	S-MART	transcript	501344	506395	.	-	.	seqedit=false;p_id=P2672;gene_id=YKR031C;tss_id=TSS6578;nbOverlaps=0;ID=YKR031C;Name=SPO14
XI	S-MART	transcript	506898	507707	.	+	.	seqedit=false;p_id=P4523;gene_id=YKR034W;tss_id=TSS2779;nbOverlaps=0;ID=YKR034W;Name=DAL80
XI	S-MART	transcript	506517	506831	.	+	.	seqedit=false;p_id=P562;gene_id=YKR032W;tss_id=TSS6909;nbOverlaps=0;ID=YKR032W;Name=YKR032W
XIV	S-MART	transcript	441366	442358	.	-	.	seqedit=false;p_id=P1924;gene_id=YNL097C;tss_id=TSS3782;nbOverlaps=0;ID=YNL097C;Name=PHO23
XI	S-MART	transcript	506879	507304	.	-	.	seqedit=false;p_id=P6215;gene_id=YKR033C;tss_id=TSS3953;nbOverlaps=0;ID=YKR033C;Name=YKR033C
XI	S-MART	transcript	507920	508561	.	-	.	seqedit=false;p_id=P1122;gene_id=YKR035C;tss_id=TSS6964;nbOverlaps=0;ID=YKR035C;Name=OPI8
XI	S-MART	transcript	507939	508553	.	+	.	seqedit=false;p_id=P3485;gene_id=YKR035W-A;tss_id=TSS6394;nbOverlaps=0;ID=YKR035W-A;Name=DID2
XI	S-MART	transcript	508702	510633	.	-	.	seqedit=false;p_id=P4035;gene_id=YKR036C;tss_id=TSS4290;nbOverlaps=0;ID=YKR036C;Name=CAF4
XI	S-MART	transcript	510910	511797	.	-	.	seqedit=false;p_id=P4497;gene_id=YKR037C;tss_id=TSS1423;nbOverlaps=0;ID=YKR037C;Name=SPC34
XI	S-MART	transcript	511999	513159	.	-	.	seqedit=false;p_id=P1612;gene_id=YKR038C;tss_id=TSS3911;nbOverlaps=0;ID=YKR038C;Name=KAE1
XIV	S-MART	transcript	440797	440919	.	-	.	seqedit=false;p_id=P4279;gene_id=YNL097C-B;tss_id=TSS41;nbOverlaps=0;ID=YNL097C-B;Name=YNL097C-B
XI	S-MART	transcript	515063	516871	.	+	.	seqedit=false;p_id=P39;gene_id=YKR039W;tss_id=TSS4677;nbOverlaps=0;ID=YKR039W;Name=GAP1
XI	S-MART	transcript	519527	520624	.	+	.	seqedit=false;p_id=P5112;gene_id=YKR042W;tss_id=TSS2434;nbOverlaps=0;ID=YKR042W;Name=UTH1
XIII	S-MART	transcript	654034	654417	.	+	.	seqedit=false;p_id=P1373;gene_id=YMR195W;tss_id=TSS1779;nbOverlaps=0;ID=YMR195W;Name=ICY1
XI	S-MART	transcript	518063	518566	.	-	.	seqedit=false;p_id=P1769;gene_id=YKR040C;tss_id=TSS5900;nbOverlaps=0;ID=YKR040C;Name=YKR040C
XI	S-MART	transcript	518198	518950	.	+	.	seqedit=false;p_id=P4256;gene_id=YKR041W;tss_id=TSS1526;nbOverlaps=0;ID=YKR041W;Name=YKR041W
XI	S-MART	transcript	520897	521712	.	-	.	seqedit=false;p_id=P6279;gene_id=YKR043C;tss_id=TSS2846;nbOverlaps=0;ID=YKR043C;Name=SHB17
XI	S-MART	transcript	522015	523346	.	+	.	seqedit=false;p_id=P5102;gene_id=YKR044W;tss_id=TSS4211;nbOverlaps=0;ID=YKR044W;Name=UIP5
VI	S-MART	transcript	20847	22787	.	-	.	seqedit=false;p_id=P349;gene_id=YFL054C;tss_id=TSS4071;nbOverlaps=0;ID=YFL054C;Name=YFL054C
XI	S-MART	transcript	524223	525074	.	-	.	seqedit=false;p_id=P2489;gene_id=YKR046C;tss_id=TSS2332;nbOverlaps=0;ID=YKR046C;Name=PET10
XI	S-MART	transcript	523418	523969	.	-	.	seqedit=false;p_id=P445;gene_id=YKR045C;tss_id=TSS7048;nbOverlaps=0;ID=YKR045C;Name=YKR045C
XIII	S-MART	transcript	658545	659198	.	-	.	seqedit=false;p_id=P6666;gene_id=YMR197C;tss_id=TSS5807;nbOverlaps=0;ID=YMR197C;Name=VTI1
XI	S-MART	transcript	525387	526640	.	-	.	seqedit=false;p_id=P1367;gene_id=YKR048C;tss_id=TSS460;nbOverlaps=0;ID=YKR048C;Name=NAP1
XI	S-MART	transcript	525257	525562	.	+	.	seqedit=false;p_id=P5747;gene_id=YKR047W;tss_id=TSS1443;nbOverlaps=0;ID=YKR047W;Name=YKR047W
XIV	S-MART	transcript	495701	498289	.	-	.	seqedit=false;p_id=P4239;gene_id=YNL068C;tss_id=TSS647;nbOverlaps=0;ID=YNL068C;Name=FKH2
XI	S-MART	transcript	526830	527231	.	-	.	seqedit=false;p_id=P2423;gene_id=YKR049C;tss_id=TSS5791;nbOverlaps=0;ID=YKR049C;Name=FMP46
XIV	S-MART	transcript	240331	241311	.	+	.	seqedit=false;p_id=P3555;gene_id=YNL217W;tss_id=TSS5150;nbOverlaps=0;ID=YNL217W;Name=YNL217W
XI	S-MART	transcript	527815	530484	.	+	.	seqedit=false;p_id=P2223;gene_id=YKR050W;tss_id=TSS625;nbOverlaps=0;ID=YKR050W;Name=TRK2
XIV	S-MART	transcript	144245	144664	.	+	.	seqedit=false;p_id=P6573;gene_id=YNL266W;tss_id=TSS6372;nbOverlaps=0;ID=YNL266W;Name=YNL266W
XI	S-MART	transcript	532550	533464	.	-	.	seqedit=false;p_id=P5712;gene_id=YKR052C;tss_id=TSS4625;nbOverlaps=0;ID=YKR052C;Name=MRS4
XI	S-MART	transcript	530946	532202	.	+	.	seqedit=false;p_id=P5498;gene_id=YKR051W;tss_id=TSS885;nbOverlaps=0;ID=YKR051W;Name=YKR051W
VIII	S-MART	transcript	194068	194808	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:8756:20258#0--HWUSI-EAS1656_0009_FC:3:83:12941:20584#0--HWUSI-EAS1656_000;p_id=P6218;gene_id=YHR044C;tss_id=TSS628;nbOverlaps=51;ID=YHR044C;Name=DOG1
XI	S-MART	transcript	534067	535281	.	-	.	seqedit=false;p_id=P2619;gene_id=YKR053C;tss_id=TSS196;nbOverlaps=0;ID=YKR053C;Name=YSR3
XI	S-MART	transcript	535647	547925	.	-	.	seqedit=false;p_id=P3634;gene_id=YKR054C;tss_id=TSS5766;nbOverlaps=0;ID=YKR054C;Name=DYN1
XI	S-MART	transcript	548216	549091	.	+	.	seqedit=false;p_id=P3067;gene_id=YKR055W;tss_id=TSS5205;nbOverlaps=0;ID=YKR055W;Name=RHO4
XI	S-MART	transcript	549448	551367	.	+	.	seqedit=false;p_id=P4190;gene_id=YKR056W;tss_id=TSS1021;nbOverlaps=0;ID=YKR056W;Name=TRM2
XIV	S-MART	transcript	138550	140385	.	+	.	seqedit=false;p_id=P514;gene_id=YNL268W;tss_id=TSS1745;nbOverlaps=0;ID=YNL268W;Name=LYP1
XI	S-MART	transcript	551657	552242	.	+	.	seqedit=false;p_id=P354;gene_id=YKR057W;tss_id=TSS5897;nbOverlaps=0;ID=YKR057W;Name=RPS21A
XI	S-MART	exon	551657	551680	.	+	.	ID=YKR057W-exon1;Name=RPS21A-exon1;Parent=YKR057W
XI	S-MART	exon	552003	552242	.	+	.	ID=YKR057W-exon2;Name=RPS21A-exon2;Parent=YKR057W
VIII	S-MART	transcript	197398	198285	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:14669:12817#0--HWUSI-EAS1656_0009_FC:3:36:4407:19757#0--HWUSI-EAS1656_000;p_id=P5994;gene_id=YHR046C;tss_id=TSS345;nbOverlaps=266;ID=YHR046C;Name=INM1
I	S-MART	transcript	92900	94486	.	+	.	seqedit=false;p_id=P3051;gene_id=YAL028W;tss_id=TSS6876;nbOverlaps=0;ID=YAL028W;Name=FRT2
XI	S-MART	transcript	554987	556174	.	+	.	seqedit=false;p_id=P3178;gene_id=YKR059W;tss_id=TSS4531;nbOverlaps=0;ID=YKR059W;Name=TIF1
XI	S-MART	transcript	556518	557342	.	+	.	seqedit=false;p_id=P4894;gene_id=YKR060W;tss_id=TSS6900;nbOverlaps=0;ID=YKR060W;Name=UTP30
VI	S-MART	transcript	12929	13951	.	+	.	seqedit=false;p_id=P4186;gene_id=YFL058W;tss_id=TSS4028;nbOverlaps=0;ID=YFL058W;Name=THI5
XI	S-MART	transcript	557677	558954	.	+	.	seqedit=false;p_id=P5121;gene_id=YKR061W;tss_id=TSS5162;nbOverlaps=0;ID=YKR061W;Name=KTR2
XI	S-MART	transcript	559666	560652	.	+	.	seqedit=false;p_id=P2570;gene_id=YKR062W;tss_id=TSS2239;nbOverlaps=0;ID=YKR062W;Name=TFA2
VIII	S-MART	transcript	195551	197233	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:9830:2077#0--HWUSI-EAS1656_0009_FC:3:67:12781:5851#0--HWUSI-EAS1656_0009_;p_id=P1278;gene_id=YHR045W;tss_id=TSS3317;nbOverlaps=373;ID=YHR045W;Name=YHR045W
XI	S-MART	transcript	560789	562297	.	-	.	seqedit=false;p_id=P4411;gene_id=YKR063C;tss_id=TSS3221;nbOverlaps=0;ID=YKR063C;Name=LAS1
XI	S-MART	transcript	562547	565138	.	+	.	seqedit=false;p_id=P1802;gene_id=YKR064W;tss_id=TSS2989;nbOverlaps=0;ID=YKR064W;Name=OAF3
XI	S-MART	transcript	565299	565892	.	-	.	seqedit=false;p_id=P4972;gene_id=YKR065C;tss_id=TSS3567;nbOverlaps=0;ID=YKR065C;Name=PAM17
XI	S-MART	transcript	566113	567198	.	-	.	seqedit=false;p_id=P333;gene_id=YKR066C;tss_id=TSS2255;nbOverlaps=0;ID=YKR066C;Name=CCP1
XIV	S-MART	transcript	135940	137661	.	-	.	seqedit=false;p_id=P2702;gene_id=YNL270C;tss_id=TSS3238;nbOverlaps=0;ID=YNL270C;Name=ALP1
XI	S-MART	transcript	567918	570149	.	+	.	seqedit=false;p_id=P4900;gene_id=YKR067W;tss_id=TSS2711;nbOverlaps=0;ID=YKR067W;Name=GPT2
XI	S-MART	transcript	570328	570909	.	-	.	seqedit=false;p_id=P1785;gene_id=YKR068C;tss_id=TSS2532;nbOverlaps=0;ID=YKR068C;Name=BET3
I	S-MART	transcript	54584	54913	.	+	.	seqedit=false;p_id=P2873;gene_id=YAL047W-A;tss_id=TSS680;nbOverlaps=0;ID=YAL047W-A;Name=YAL047W-A
XI	S-MART	transcript	571612	573393	.	+	.	seqedit=false;p_id=P408;gene_id=YKR069W;tss_id=TSS3109;nbOverlaps=0;ID=YKR069W;Name=MET1
XII	S-MART	transcript	681186	682238	.	+	.	seqedit=false;p_id=P4233;gene_id=YLR270W;tss_id=TSS6776;nbOverlaps=0;ID=YLR270W;Name=DCS1
IV	S-MART	transcript	188154	190586	.	-	.	seqedit=false;p_id=P981;gene_id=YDL148C;tss_id=TSS6581;nbOverlaps=0;ID=YDL148C;Name=NOP14
IV	S-MART	transcript	184925	187918	.	+	.	seqedit=false;p_id=P6047;gene_id=YDL149W;tss_id=TSS5169;nbOverlaps=0;ID=YDL149W;Name=ATG9
IV	S-MART	transcript	183343	184611	.	+	.	seqedit=false;p_id=P2206;gene_id=YDL150W;tss_id=TSS6468;nbOverlaps=0;ID=YDL150W;Name=RPC53
VIII	S-MART	transcript	204607	206151	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:10808:2689#0--HWUSI-EAS1656_0009_FC:3:18:11420:17038#0--HWUSI-EAS1656_000;p_id=P1483;gene_id=YHR048W;tss_id=TSS1397;nbOverlaps=153;ID=YHR048W;Name=YHK8
IV	S-MART	transcript	183318	183899	.	-	.	seqedit=false;p_id=P4336;gene_id=YDL151C;tss_id=TSS5384;nbOverlaps=0;ID=YDL151C;Name=BUD30
IV	S-MART	transcript	181186	183018	.	-	.	seqedit=false;p_id=P3267;gene_id=YDL153C;tss_id=TSS6363;nbOverlaps=0;ID=YDL153C;Name=SAS10
IV	S-MART	transcript	182822	183187	.	+	.	seqedit=false;p_id=P405;gene_id=YDL152W;tss_id=TSS2231;nbOverlaps=0;ID=YDL152W;Name=YDL152W
IV	S-MART	transcript	178334	181039	.	+	.	seqedit=false;p_id=P4322;gene_id=YDL154W;tss_id=TSS3690;nbOverlaps=0;ID=YDL154W;Name=MSH5
IV	S-MART	transcript	176773	178056	.	+	.	seqedit=false;p_id=P1251;gene_id=YDL155W;tss_id=TSS5275;nbOverlaps=0;ID=YDL155W;Name=CLB3
IV	S-MART	transcript	173056	173232	.	-	.	seqedit=false;p_id=P233;gene_id=YDL159C-B;tss_id=TSS5700;nbOverlaps=0;ID=YDL159C-B;Name=YDL159C-B
I	S-MART	transcript	51855	52595	.	-	.	seqedit=false;p_id=P1305;gene_id=YAL049C;tss_id=TSS4667;nbOverlaps=0;ID=YAL049C;Name=AIM2
IV	S-MART	transcript	174918	176486	.	+	.	seqedit=false;p_id=P1712;gene_id=YDL156W;tss_id=TSS3302;nbOverlaps=0;ID=YDL156W;Name=YDL156W
IV	S-MART	transcript	174232	174588	.	-	.	seqedit=false;p_id=P3493;gene_id=YDL157C;tss_id=TSS4653;nbOverlaps=0;ID=YDL157C;Name=YDL157C
IV	S-MART	transcript	173866	174174	.	-	.	seqedit=false;p_id=P119;gene_id=YDL158C;tss_id=TSS3797;nbOverlaps=0;ID=YDL158C;Name=YDL158C
IV	S-MART	transcript	172481	174028	.	+	.	seqedit=false;p_id=P4921;gene_id=YDL159W;tss_id=TSS6343;nbOverlaps=0;ID=YDL159W;Name=STE7
IV	S-MART	transcript	172182	172313	.	+	.	seqedit=false;p_id=P5188;gene_id=YDL159W-A;tss_id=TSS3495;nbOverlaps=0;ID=YDL159W-A;Name=YDL159W-A
IV	S-MART	transcript	170410	171930	.	-	.	seqedit=false;p_id=P4116;gene_id=YDL160C;tss_id=TSS2077;nbOverlaps=0;ID=YDL160C;Name=DHH1
I	S-MART	transcript	48564	51707	.	+	.	seqedit=false;p_id=P3309;gene_id=YAL051W;tss_id=TSS773;nbOverlaps=0;ID=YAL051W;Name=OAF1
IV	S-MART	transcript	169366	169608	.	-	.	seqedit=false;p_id=P5332;gene_id=YDL160C-A;tss_id=TSS784;nbOverlaps=0;ID=YDL160C-A;Name=YDL160C-A
IV	S-MART	transcript	167714	169078	.	+	.	seqedit=false;p_id=P657;gene_id=YDL161W;tss_id=TSS7050;nbOverlaps=0;ID=YDL161W;Name=ENT1
IV	S-MART	transcript	164987	167254	.	-	.	seqedit=false;p_id=P3712;gene_id=YDL164C;tss_id=TSS2335;nbOverlaps=0;ID=YDL164C;Name=CDC9
IV	S-MART	transcript	167359	167715	.	-	.	seqedit=false;p_id=P361;gene_id=YDL162C;tss_id=TSS3762;nbOverlaps=0;ID=YDL162C;Name=YDL162C
IV	S-MART	transcript	166956	167258	.	+	.	seqedit=false;p_id=P1003;gene_id=YDL163W;tss_id=TSS2002;nbOverlaps=0;ID=YDL163W;Name=YDL163W
IV	S-MART	transcript	164290	164865	.	+	.	seqedit=false;p_id=P2501;gene_id=YDL165W;tss_id=TSS5140;nbOverlaps=0;ID=YDL165W;Name=CDC36
VIII	S-MART	transcript	207654	209303	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:1519:10463#0--HWUSI-EAS1656_0009_FC:3:98:8026:21225#0--HWUSI-EAS1656_0009;p_id=P365;gene_id=YHR050W;tss_id=TSS413;nbOverlaps=461;ID=YHR050W;Name=SMF2
IV	S-MART	transcript	163449	164042	.	-	.	seqedit=false;p_id=P190;gene_id=YDL166C;tss_id=TSS4871;nbOverlaps=0;ID=YDL166C;Name=FAP7
IV	S-MART	transcript	160995	163154	.	-	.	seqedit=false;p_id=P6437;gene_id=YDL167C;tss_id=TSS5571;nbOverlaps=0;ID=YDL167C;Name=NRP1
IV	S-MART	transcript	159604	160764	.	+	.	seqedit=false;p_id=P4854;gene_id=YDL168W;tss_id=TSS7033;nbOverlaps=0;ID=YDL168W;Name=SFA1
IV	S-MART	transcript	158064	158735	.	-	.	seqedit=false;p_id=P331;gene_id=YDL169C;tss_id=TSS936;nbOverlaps=0;ID=YDL169C;Name=UGX2
IV	S-MART	transcript	156318	157904	.	+	.	seqedit=false;p_id=P4036;gene_id=YDL170W;tss_id=TSS1062;nbOverlaps=0;ID=YDL170W;Name=UGA3
IV	S-MART	transcript	149203	155640	.	-	.	seqedit=false;p_id=P5552;gene_id=YDL171C;tss_id=TSS5936;nbOverlaps=0;ID=YDL171C;Name=GLT1
XIII	S-MART	transcript	668492	669655	.	+	.	seqedit=false;p_id=P1011;gene_id=YMR203W;tss_id=TSS6370;nbOverlaps=0;ID=YMR203W;Name=TOM40
IV	S-MART	transcript	148191	149078	.	+	.	seqedit=false;p_id=P4413;gene_id=YDL173W;tss_id=TSS2427;nbOverlaps=0;ID=YDL173W;Name=PAR32
IV	S-MART	transcript	148607	149086	.	-	.	seqedit=false;p_id=P6427;gene_id=YDL172C;tss_id=TSS534;nbOverlaps=0;ID=YDL172C;Name=YDL172C
IV	S-MART	transcript	145826	147589	.	-	.	seqedit=false;p_id=P4986;gene_id=YDL174C;tss_id=TSS2561;nbOverlaps=0;ID=YDL174C;Name=DLD1
IV	S-MART	transcript	144484	145518	.	-	.	seqedit=false;p_id=P769;gene_id=YDL175C;tss_id=TSS5799;nbOverlaps=0;ID=YDL175C;Name=AIR2
XIII	S-MART	transcript	634689	635984	.	-	.	seqedit=false;p_id=P1274;gene_id=YMR187C;tss_id=TSS5225;nbOverlaps=0;ID=YMR187C;Name=YMR187C
IV	S-MART	transcript	139522	141114	.	+	.	seqedit=false;p_id=P3477;gene_id=YDL178W;tss_id=TSS1424;nbOverlaps=0;ID=YDL178W;Name=DLD2
IV	S-MART	transcript	142097	144223	.	+	.	seqedit=false;p_id=P2859;gene_id=YDL176W;tss_id=TSS5573;nbOverlaps=0;ID=YDL176W;Name=YDL176W
I	S-MART	transcript	42177	42719	.	+	.	seqedit=false;p_id=P3742;gene_id=YAL055W;tss_id=TSS1654;nbOverlaps=0;ID=YAL055W;Name=PEX22
IV	S-MART	transcript	141209	141721	.	-	.	seqedit=false;p_id=P2003;gene_id=YDL177C;tss_id=TSS2430;nbOverlaps=0;ID=YDL177C;Name=YDL177C
IV	S-MART	transcript	138291	139205	.	+	.	seqedit=false;p_id=P6365;gene_id=YDL179W;tss_id=TSS947;nbOverlaps=0;ID=YDL179W;Name=PCL9
IV	S-MART	transcript	135179	135436	.	+	.	seqedit=false;p_id=P6327;gene_id=YDL181W;tss_id=TSS6147;nbOverlaps=0;ID=YDL181W;Name=INH1
IV	S-MART	transcript	135896	137539	.	+	.	seqedit=false;p_id=P1707;gene_id=YDL180W;tss_id=TSS5779;nbOverlaps=0;ID=YDL180W;Name=YDL180W
IV	S-MART	transcript	133437	134723	.	+	.	seqedit=false;p_id=P1146;gene_id=YDL182W;tss_id=TSS4971;nbOverlaps=0;ID=YDL182W;Name=LYS20
IV	S-MART	transcript	130407	130484	.	-	.	seqedit=false;p_id=P4094;gene_id=YDL184C;tss_id=TSS4114;nbOverlaps=0;ID=YDL184C;Name=RPL41A
I	S-MART	transcript	38696	39046	.	-	.	seqedit=false;p_id=P1626;gene_id=YAL056C-A;tss_id=TSS989;nbOverlaps=0;ID=YAL056C-A;Name=YAL056C-A
IV	S-MART	transcript	130871	131833	.	-	.	seqedit=false;p_id=P1658;gene_id=YDL183C;tss_id=TSS6774;nbOverlaps=0;ID=YDL183C;Name=YDL183C
IV	S-MART	transcript	126608	126835	.	-	.	seqedit=false;p_id=P6171;gene_id=YDL185C-A;tss_id=TSS229;nbOverlaps=0;ID=YDL185C-A;Name=YDL185C-A
IV	S-MART	transcript	126787	130002	.	+	.	seqedit=false;p_id=P866;gene_id=YDL185W;tss_id=TSS5894;nbOverlaps=0;ID=YDL185W;Name=VMA1
IV	S-MART	transcript	123865	124998	.	-	.	seqedit=false;p_id=P3586;gene_id=YDL188C;tss_id=TSS2153;nbOverlaps=0;ID=YDL188C;Name=PPH22
XVI	S-MART	transcript	361872	363362	.	+	.	seqedit=false;p_id=P3565;gene_id=YPL100W;tss_id=TSS4611;nbOverlaps=0;ID=YPL100W;Name=ATG21
IV	S-MART	transcript	125616	126449	.	+	.	seqedit=false;p_id=P1830;gene_id=YDL186W;tss_id=TSS7002;nbOverlaps=0;ID=YDL186W;Name=YDL186W
IV	S-MART	transcript	125509	125838	.	-	.	seqedit=false;p_id=P3297;gene_id=YDL187C;tss_id=TSS3769;nbOverlaps=0;ID=YDL187C;Name=YDL187C
I	S-MART	transcript	39259	41901	.	+	.	seqedit=false;p_id=P1;gene_id=YAL056W;tss_id=TSS1276;nbOverlaps=0;ID=YAL056W;Name=GPB2
IV	S-MART	transcript	122216	123589	.	+	.	seqedit=false;p_id=P4197;gene_id=YDL189W;tss_id=TSS5480;nbOverlaps=0;ID=YDL189W;Name=RBS1
IV	S-MART	transcript	118707	121592	.	-	.	seqedit=false;p_id=P5370;gene_id=YDL190C;tss_id=TSS3799;nbOverlaps=0;ID=YDL190C;Name=UFD2
IV	S-MART	transcript	117664	118517	.	+	.	seqedit=false;p_id=P4737;gene_id=YDL191W;tss_id=TSS6910;nbOverlaps=0;ID=YDL191W;Name=RPL35A
IV	S-MART	exon	117664	117666	.	+	.	ID=YDL191W-exon1;Name=RPL35A-exon1;Parent=YDL191W
IV	S-MART	exon	118158	118517	.	+	.	ID=YDL191W-exon2;Name=RPL35A-exon2;Parent=YDL191W
IV	S-MART	transcript	116321	116866	.	+	.	seqedit=false;p_id=P3098;gene_id=YDL192W;tss_id=TSS6815;nbOverlaps=0;ID=YDL192W;Name=ARF1
I	S-MART	transcript	37464	38972	.	+	.	seqedit=false;p_id=P3743;gene_id=YAL058W;tss_id=TSS1962;nbOverlaps=0;ID=YAL058W;Name=CNE1
IV	S-MART	transcript	114672	115799	.	+	.	seqedit=false;p_id=P6398;gene_id=YDL193W;tss_id=TSS5830;nbOverlaps=0;ID=YDL193W;Name=NUS1
IV	S-MART	transcript	111580	114234	.	+	.	seqedit=false;p_id=P282;gene_id=YDL194W;tss_id=TSS3214;nbOverlaps=0;ID=YDL194W;Name=SNF3
IV	S-MART	transcript	107208	111029	.	+	.	seqedit=false;p_id=P454;gene_id=YDL195W;tss_id=TSS872;nbOverlaps=0;ID=YDL195W;Name=SEC31
IV	S-MART	transcript	104917	106494	.	-	.	seqedit=false;p_id=P2822;gene_id=YDL197C;tss_id=TSS2722;nbOverlaps=0;ID=YDL197C;Name=ASF2
IV	S-MART	transcript	106741	107070	.	+	.	seqedit=false;p_id=P3487;gene_id=YDL196W;tss_id=TSS5540;nbOverlaps=0;ID=YDL196W;Name=YDL196W
IV	S-MART	transcript	103649	104551	.	-	.	seqedit=false;p_id=P2769;gene_id=YDL198C;tss_id=TSS1567;nbOverlaps=0;ID=YDL198C;Name=GGC1
I	S-MART	transcript	36496	36918	.	-	.	seqedit=false;p_id=P4470;gene_id=YAL059C-A;tss_id=TSS2723;nbOverlaps=0;ID=YAL059C-A;Name=YAL059C-A
IV	S-MART	transcript	100501	101067	.	-	.	seqedit=false;p_id=P1436;gene_id=YDL200C;tss_id=TSS6361;nbOverlaps=0;ID=YDL200C;Name=MGT1
IV	S-MART	transcript	101290	103353	.	-	.	seqedit=false;p_id=P6677;gene_id=YDL199C;tss_id=TSS2716;nbOverlaps=0;ID=YDL199C;Name=YDL199C
IV	S-MART	transcript	99561	100421	.	+	.	seqedit=false;p_id=P4797;gene_id=YDL201W;tss_id=TSS1385;nbOverlaps=0;ID=YDL201W;Name=TRM8
IV	S-MART	transcript	98475	99224	.	+	.	seqedit=false;p_id=P6196;gene_id=YDL202W;tss_id=TSS371;nbOverlaps=0;ID=YDL202W;Name=MRPL11
XIII	S-MART	transcript	637500	640604	.	+	.	seqedit=false;p_id=P5479;gene_id=YMR189W;tss_id=TSS6122;nbOverlaps=0;ID=YMR189W;Name=GCV2
IV	S-MART	transcript	96082	97953	.	-	.	seqedit=false;p_id=P1849;gene_id=YDL203C;tss_id=TSS4727;nbOverlaps=0;ID=YDL203C;Name=ACK1
IV	S-MART	transcript	94605	95786	.	+	.	seqedit=false;p_id=P1052;gene_id=YDL204W;tss_id=TSS1225;nbOverlaps=0;ID=YDL204W;Name=RTN2
I	S-MART	transcript	36509	37147	.	+	.	seqedit=false;p_id=P4020;gene_id=YAL059W;tss_id=TSS513;nbOverlaps=0;ID=YAL059W;Name=ECM1
I	S-MART	transcript	35155	36303	.	+	.	seqedit=false;p_id=P3935;gene_id=YAL060W;tss_id=TSS1633;nbOverlaps=0;ID=YAL060W;Name=BDH1
I	S-MART	transcript	33448	34701	.	+	.	seqedit=false;p_id=P5285;gene_id=YAL061W;tss_id=TSS6056;nbOverlaps=0;ID=YAL061W;Name=BDH2
XVI	S-MART	transcript	569336	571378	.	-	.	seqedit=false;p_id=P2865;gene_id=YPR007C;tss_id=TSS3923;nbOverlaps=0;ID=YPR007C;Name=REC8
I	S-MART	transcript	31567	32940	.	+	.	seqedit=false;p_id=P5691;gene_id=YAL062W;tss_id=TSS1120;nbOverlaps=0;ID=YAL062W;Name=GDH3
VIII	S-MART	transcript	218226	218843	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:6263:14739#0--HWUSI-EAS1656_0009_FC:3:5:10042:20817#0--HWUSI-EAS1656_0009;p_id=P1927;gene_id=YHR057C;tss_id=TSS4146;nbOverlaps=228;ID=YHR057C;Name=CPR2
XVI	S-MART	transcript	352863	355412	.	-	.	seqedit=false;p_id=P6498;gene_id=YPL105C;tss_id=TSS5433;nbOverlaps=0;ID=YPL105C;Name=SYH1
VIII	S-MART	transcript	218997	219884	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:14670:15733#0--HWUSI-EAS1656_0009_FC:3:11:16292:9026#0--HWUSI-EAS1656_000;p_id=P4249;gene_id=YHR058C;tss_id=TSS6947;nbOverlaps=59;ID=YHR058C;Name=MED6
I	S-MART	transcript	13363	13743	.	-	.	seqedit=false;p_id=P151;gene_id=YAL064C-A;tss_id=TSS2535;nbOverlaps=0;ID=YAL064C-A;Name=TDA8
VIII	S-MART	transcript	220725	221270	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:12216:2612#0--HWUSI-EAS1656_0009_FC:3:117:6705:16654#0--HWUSI-EAS1656_000;p_id=P4265;gene_id=YHR060W;tss_id=TSS3293;nbOverlaps=71;ID=YHR060W;Name=VMA22
I	S-MART	transcript	21566	21850	.	+	.	seqedit=false;p_id=P3439;gene_id=YAL064W;tss_id=TSS1432;nbOverlaps=0;ID=YAL064W;Name=YAL064W
I	S-MART	transcript	7235	9016	.	-	.	seqedit=false;p_id=P6606;gene_id=YAL067C;tss_id=TSS5465;nbOverlaps=0;ID=YAL067C;Name=SEO1
I	S-MART	transcript	11565	11951	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:16:14438:9402#0--HWUSI-EAS1656_0009_FC:3:60:15170:14015#0;p_id=P4499;gene_id=YAL065C;tss_id=TSS1360;nbOverlaps=2;ID=YAL065C;Name=YAL065C
II	S-MART	transcript	380411	381046	.	+	.	seqedit=false;p_id=P1526;gene_id=YBR071W;tss_id=TSS6986;nbOverlaps=0;ID=YBR071W;Name=YBR071W
XIII	S-MART	transcript	601562	603082	.	-	.	seqedit=false;p_id=P4886;gene_id=YMR170C;tss_id=TSS3473;nbOverlaps=0;ID=YMR170C;Name=ALD2
VIII	S-MART	transcript	141894	143558	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:7936:14038#0--HWUSI-EAS1656_0009_FC:3:30:13913:9553#0--HWUSI-EAS1656_000;p_id=P4895;gene_id=YHR019C;tss_id=TSS2484;nbOverlaps=4757;ID=YHR019C;Name=DED81
XIII	S-MART	transcript	607828	608211	.	-	.	seqedit=false;p_id=P6651;gene_id=YMR172C-A;tss_id=TSS2302;nbOverlaps=0;ID=YMR172C-A;Name=YMR172C-A
XIII	S-MART	transcript	605981	608140	.	+	.	seqedit=false;p_id=P3245;gene_id=YMR172W;tss_id=TSS6923;nbOverlaps=0;ID=YMR172W;Name=HOT1
XIII	S-MART	transcript	608689	609981	.	+	.	seqedit=false;p_id=P6662;gene_id=YMR173W;tss_id=TSS4049;nbOverlaps=0;ID=YMR173W;Name=DDR48
XIII	S-MART	transcript	608897	610081	.	+	.	seqedit=false;p_id=P141;gene_id=YMR173W-A;tss_id=TSS6433;nbOverlaps=0;ID=YMR173W-A;Name=YMR173W-A
XIII	S-MART	transcript	610159	610365	.	-	.	seqedit=false;p_id=P833;gene_id=YMR174C;tss_id=TSS5781;nbOverlaps=0;ID=YMR174C;Name=PAI3
XV	S-MART	transcript	984942	986462	.	-	.	seqedit=false;p_id=P6444;gene_id=YOR347C;tss_id=TSS6788;nbOverlaps=0;ID=YOR347C;Name=PYK2
I	S-MART	transcript	101565	105872	.	-	.	seqedit=false;p_id=P5041;gene_id=YAL024C;tss_id=TSS1525;nbOverlaps=0;ID=YAL024C;Name=LTE1
VIII	S-MART	transcript	149575	150345	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:8457:20865#0--HWUSI-EAS1656_0009_FC:3:106:12303:16394#0--HWUSI-EAS1656_00;p_id=P6184;gene_id=YHR022C;tss_id=TSS4791;nbOverlaps=15;ID=YHR022C;Name=YHR022C
VIII	S-MART	transcript	151666	157452	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:63:3689:8437#0--HWUSI-EAS1656_0009_FC:3:73:13340:17103#0--HWUSI-EAS1656_0009;p_id=P1944;gene_id=YHR023W;tss_id=TSS6485;nbOverlaps=580;ID=YHR023W;Name=MYO1
VIII	S-MART	transcript	157744	159192	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:10387:7210#0--HWUSI-EAS1656_0009_FC:3:116:5427:2648#0--HWUSI-EAS1656_0009;p_id=P3362;gene_id=YHR024C;tss_id=TSS4763;nbOverlaps=379;ID=YHR024C;Name=MAS2
XIII	S-MART	transcript	619858	622134	.	+	.	seqedit=false;p_id=P5605;gene_id=YMR179W;tss_id=TSS5988;nbOverlaps=0;ID=YMR179W;Name=SPT21
XIII	S-MART	transcript	618479	619303	.	+	.	seqedit=false;p_id=P3551;gene_id=YMR178W;tss_id=TSS4954;nbOverlaps=0;ID=YMR178W;Name=YMR178W
XIII	S-MART	transcript	622251	623213	.	-	.	seqedit=false;p_id=P6661;gene_id=YMR180C;tss_id=TSS1911;nbOverlaps=0;ID=YMR180C;Name=CTL1
XIII	S-MART	transcript	624532	625167	.	-	.	seqedit=false;p_id=P320;gene_id=YMR182C;tss_id=TSS6487;nbOverlaps=0;ID=YMR182C;Name=RGM1
XIII	S-MART	transcript	623616	624080	.	-	.	seqedit=false;p_id=P5404;gene_id=YMR181C;tss_id=TSS593;nbOverlaps=0;ID=YMR181C;Name=YMR181C
XIII	S-MART	transcript	625811	625897	.	+	.	seqedit=false;p_id=P6276;gene_id=YMR182W-A;tss_id=TSS5430;nbOverlaps=0;ID=YMR182W-A;Name=YMR182W-A
I	S-MART	transcript	84749	87031	.	-	.	seqedit=false;p_id=P3288;gene_id=YAL031C;tss_id=TSS6976;nbOverlaps=0;ID=YAL031C;Name=GIP4
I	S-MART	transcript	84669	84977	.	+	.	seqedit=false;p_id=P5416;gene_id=YAL031W-A;tss_id=TSS6293;nbOverlaps=0;ID=YAL031W-A;Name=YAL031W-A
XIII	S-MART	transcript	632355	634472	.	+	.	seqedit=false;p_id=P3344;gene_id=YMR186W;tss_id=TSS3788;nbOverlaps=0;ID=YMR186W;Name=HSC82
XIII	S-MART	transcript	629025	631970	.	+	.	seqedit=false;p_id=P5918;gene_id=YMR185W;tss_id=TSS274;nbOverlaps=0;ID=YMR185W;Name=YMR185W
XIII	S-MART	transcript	636291	637004	.	-	.	seqedit=false;p_id=P6507;gene_id=YMR188C;tss_id=TSS2023;nbOverlaps=0;ID=YMR188C;Name=MRPS17
VIII	S-MART	transcript	176965	177999	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:11210:11232#0--HWUSI-EAS1656_0009_FC:3:54:12318:15264#0--HWUSI-EAS1656_0;p_id=P4591;gene_id=YHR034C;tss_id=TSS6915;nbOverlaps=36;ID=YHR034C;Name=PIH1
VIII	S-MART	transcript	175548	176819	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:10703:14620#0--HWUSI-EAS1656_0009_FC:3:115:2568:10348#0--HWUSI-EAS1656_000;p_id=P1457;gene_id=YHR033W;tss_id=TSS1902;nbOverlaps=94;ID=YHR033W;Name=YHR033W
XIII	S-MART	transcript	640915	645258	.	-	.	seqedit=false;p_id=P2155;gene_id=YMR190C;tss_id=TSS4506;nbOverlaps=0;ID=YMR190C;Name=SGS1
XV	S-MART	transcript	992864	994855	.	-	.	seqedit=false;p_id=P2484;gene_id=YOR350C;tss_id=TSS3675;nbOverlaps=0;ID=YOR350C;Name=MNE1
XIII	S-MART	transcript	645656	646777	.	+	.	seqedit=false;p_id=P6390;gene_id=YMR191W;tss_id=TSS884;nbOverlaps=0;ID=YMR191W;Name=SPG5
XIII	S-MART	transcript	647118	649280	.	+	.	seqedit=false;p_id=P53;gene_id=YMR192W;tss_id=TSS908;nbOverlaps=0;ID=YMR192W;Name=GYL1
II	S-MART	transcript	382030	382674	.	+	.	seqedit=false;p_id=P63;gene_id=YBR072W;tss_id=TSS199;nbOverlaps=0;ID=YBR072W;Name=HSP26
XIII	S-MART	transcript	651072	651458	.	-	.	seqedit=false;p_id=P729;gene_id=YMR193C-A;tss_id=TSS6580;nbOverlaps=0;ID=YMR193C-A;Name=YMR193C-A
I	S-MART	transcript	71786	73288	.	+	.	seqedit=false;p_id=P4341;gene_id=YAL038W;tss_id=TSS1368;nbOverlaps=0;ID=YAL038W;Name=CDC19
XIII	S-MART	transcript	652912	653136	.	-	.	seqedit=false;p_id=P3023;gene_id=YMR194C-A;tss_id=TSS5231;nbOverlaps=0;ID=YMR194C-A;Name=YMR194C-A
XIII	S-MART	transcript	652594	652887	.	-	.	seqedit=false;p_id=P3293;gene_id=YMR194C-B;tss_id=TSS212;nbOverlaps=0;ID=YMR194C-B;Name=CMC4
XIII	S-MART	exon	652594	652775	.	-	.	ID=YMR194C-B-exon1;Name=CMC4-exon1;Parent=YMR194C-B
XIII	S-MART	exon	652848	652887	.	-	.	ID=YMR194C-B-exon2;Name=CMC4-exon2;Parent=YMR194C-B
XV	S-MART	transcript	995018	996511	.	-	.	seqedit=false;p_id=P4016;gene_id=YOR351C;tss_id=TSS4430;nbOverlaps=0;ID=YOR351C;Name=MEK1
I	S-MART	transcript	65778	67520	.	-	.	seqedit=false;p_id=P2000;gene_id=YAL040C;tss_id=TSS4051;nbOverlaps=0;ID=YAL040C;Name=CLN3
I	S-MART	transcript	62840	65404	.	+	.	seqedit=false;p_id=P1735;gene_id=YAL041W;tss_id=TSS4521;nbOverlaps=0;ID=YAL041W;Name=CDC24
I	S-MART	transcript	61231	61608	.	-	.	seqedit=false;p_id=P5110;gene_id=YAL042C-A;tss_id=TSS2734;nbOverlaps=0;ID=YAL042C-A;Name=YAL042C-A
I	S-MART	transcript	61316	62563	.	+	.	seqedit=false;p_id=P3885;gene_id=YAL042W;tss_id=TSS4096;nbOverlaps=0;ID=YAL042W;Name=ERV46
I	S-MART	transcript	58695	61052	.	-	.	seqedit=false;p_id=P4604;gene_id=YAL043C;tss_id=TSS793;nbOverlaps=0;ID=YAL043C;Name=PTA1
I	S-MART	transcript	57950	58462	.	-	.	seqedit=false;p_id=P2329;gene_id=YAL044C;tss_id=TSS4514;nbOverlaps=0;ID=YAL044C;Name=GCV3
XV	S-MART	transcript	998453	1000828	.	-	.	seqedit=false;p_id=P2787;gene_id=YOR353C;tss_id=TSS447;nbOverlaps=0;ID=YOR353C;Name=SOG2
I	S-MART	transcript	57518	57850	.	+	.	seqedit=false;p_id=P681;gene_id=YAL044W-A;tss_id=TSS6925;nbOverlaps=0;ID=YAL044W-A;Name=YAL044W-A
XIII	S-MART	transcript	655076	658342	.	+	.	seqedit=false;p_id=P315;gene_id=YMR196W;tss_id=TSS5787;nbOverlaps=0;ID=YMR196W;Name=YMR196W
XIII	S-MART	transcript	659745	661529	.	+	.	seqedit=false;p_id=P2574;gene_id=YMR198W;tss_id=TSS152;nbOverlaps=0;ID=YMR198W;Name=CIK1
XIII	S-MART	transcript	662644	664284	.	+	.	seqedit=false;p_id=P3053;gene_id=YMR199W;tss_id=TSS4551;nbOverlaps=0;ID=YMR199W;Name=CLN1
VIII	S-MART	transcript	198740	201310	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:16992:13639#0--HWUSI-EAS1656_0009_FC:3:76:17632:8098#0--HWUSI-EAS1656_0009;p_id=P969;gene_id=YHR047C;tss_id=TSS272;nbOverlaps=919;ID=YHR047C;Name=AAP1
XIII	S-MART	transcript	665845	667044	.	-	.	seqedit=false;p_id=P4964;gene_id=YMR201C;tss_id=TSS3237;nbOverlaps=0;ID=YMR201C;Name=RAD14
XIII	S-MART	exon	665845	666933	.	-	.	ID=YMR201C-exon1;Name=RAD14-exon1;Parent=YMR201C
XIII	S-MART	exon	667018	667044	.	-	.	ID=YMR201C-exon2;Name=RAD14-exon2;Parent=YMR201C
XV	S-MART	transcript	997213	998244	.	+	.	seqedit=false;p_id=P6396;gene_id=YOR352W;tss_id=TSS214;nbOverlaps=0;ID=YOR352W;Name=YOR352W
VIII	S-MART	transcript	207234	207530	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:93:17062:18838#0--HWUSI-EAS1656_0009_FC:3:17:11038:9893#0--HWUSI-EAS1656_000;p_id=P1175;gene_id=YHR049C-A;tss_id=TSS6751;nbOverlaps=114;ID=YHR049C-A;Name=YHR049C-A
VIII	S-MART	transcript	206462	207193	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:17788:11050#0--HWUSI-EAS1656_0009_FC:3:83:8621:8215#0--HWUSI-EAS1656_0009;p_id=P4160;gene_id=YHR049W;tss_id=TSS2018;nbOverlaps=413;ID=YHR049W;Name=FSH1
I	S-MART	transcript	45899	48250	.	+	.	seqedit=false;p_id=P3444;gene_id=YAL053W;tss_id=TSS3045;nbOverlaps=0;ID=YAL053W;Name=FLC2
I	S-MART	transcript	42881	45022	.	-	.	seqedit=false;p_id=P4033;gene_id=YAL054C;tss_id=TSS3832;nbOverlaps=0;ID=YAL054C;Name=ACS1
VIII	S-MART	transcript	209705	210151	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:17074:4996#0--HWUSI-EAS1656_0009_FC:3:72:9303:19267#0--HWUSI-EAS1656_0009;p_id=P2978;gene_id=YHR051W;tss_id=TSS2909;nbOverlaps=238;ID=YHR051W;Name=COX6
VIII	S-MART	transcript	210848	211978	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:22:1473:11482#0--HWUSI-EAS1656_0009_FC:3:14:8125:1175#0--HWUSI-EAS1656_0009_;p_id=P4350;gene_id=YHR052W;tss_id=TSS4699;nbOverlaps=575;ID=YHR052W;Name=CIC1
XV	S-MART	transcript	1001147	1003225	.	-	.	seqedit=false;p_id=P6534;gene_id=YOR354C;tss_id=TSS3431;nbOverlaps=0;ID=YOR354C;Name=MSC6
VIII	S-MART	transcript	212510	212704	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:13989:18973#0--HWUSI-EAS1656_0009_FC:3:97:9902:8638#0--HWUSI-EAS1656_000;p_id=P4949;gene_id=YHR052W-A;tss_id=TSS5232;nbOverlaps=802;ID=YHR052W-A;Name=YHR052W-A
VIII	S-MART	transcript	212535	212720	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:13989:18973#0--HWUSI-EAS1656_0009_FC:3:97:9902:8638#0--HWUSI-EAS1656_000;p_id=P3783;gene_id=YHR053C;tss_id=TSS1004;nbOverlaps=718;ID=YHR053C;Name=CUP1-1
VIII	S-MART	transcript	214508	214702	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:13989:18973#0--HWUSI-EAS1656_0009_FC:3:97:9902:8638#0--HWUSI-EAS1656_000;p_id=P971;gene_id=YHR054W-A;tss_id=TSS6154;nbOverlaps=802;ID=YHR054W-A;Name=YHR054W-A
VIII	S-MART	transcript	213185	214249	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:17096:21040#0--HWUSI-EAS1656_0009_FC:3:90:10371:3843#0--HWUSI-EAS1656_000;p_id=P4399;gene_id=YHR054C;tss_id=TSS4004;nbOverlaps=148;ID=YHR054C;Name=YHR054C
VIII	S-MART	transcript	214533	214718	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:13989:18973#0--HWUSI-EAS1656_0009_FC:3:97:9902:8638#0--HWUSI-EAS1656_000;p_id=P1958;gene_id=YHR055C;tss_id=TSS2917;nbOverlaps=718;ID=YHR055C;Name=CUP1-2
XII	S-MART	transcript	971917	973170	.	-	.	seqedit=false;p_id=P5503;gene_id=YLR423C;tss_id=TSS543;nbOverlaps=0;ID=YLR423C;Name=ATG17
VIII	S-MART	transcript	215183	217834	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:16326:1140#0--HWUSI-EAS1656_0009_FC:3:67:17096:21040#0--HWUSI-EAS1656_000;p_id=P5890;gene_id=YHR056C;tss_id=TSS1198;nbOverlaps=238;ID=YHR056C;Name=RSC30
XV	S-MART	transcript	1005137	1006705	.	+	.	seqedit=false;p_id=P3576;gene_id=YOR355W;tss_id=TSS4708;nbOverlaps=0;ID=YOR355W;Name=GDS1
VIII	S-MART	transcript	217406	217840	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:1312:4936#0--HWUSI-EAS1656_0009_FC:3:71:3321:14585#0--HWUSI-EAS1656_0009_;p_id=P5006;gene_id=YHR056W-A;tss_id=TSS579;nbOverlaps=19;ID=YHR056W-A;Name=YHR056W-A
XIII	S-MART	transcript	693381	695153	.	+	.	seqedit=false;p_id=P2395;gene_id=YMR213W;tss_id=TSS3844;nbOverlaps=0;ID=YMR213W;Name=CEF1
XIII	S-MART	transcript	695350	696483	.	+	.	seqedit=false;p_id=P963;gene_id=YMR214W;tss_id=TSS3940;nbOverlaps=0;ID=YMR214W;Name=SCJ1
XIII	S-MART	transcript	696796	698370	.	+	.	seqedit=false;p_id=P3405;gene_id=YMR215W;tss_id=TSS3101;nbOverlaps=0;ID=YMR215W;Name=GAS3
XIII	S-MART	transcript	698811	701039	.	-	.	seqedit=false;p_id=P5432;gene_id=YMR216C;tss_id=TSS526;nbOverlaps=0;ID=YMR216C;Name=SKY1
XIII	S-MART	transcript	701790	703367	.	+	.	seqedit=false;p_id=P6388;gene_id=YMR217W;tss_id=TSS421;nbOverlaps=0;ID=YMR217W;Name=GUA1
XV	S-MART	transcript	1007221	1009116	.	+	.	seqedit=false;p_id=P6104;gene_id=YOR356W;tss_id=TSS5145;nbOverlaps=0;ID=YOR356W;Name=CIR2
XIV	S-MART	transcript	644320	646950	.	-	.	seqedit=false;p_id=P5515;gene_id=YNR011C;tss_id=TSS1599;nbOverlaps=0;ID=YNR011C;Name=PRP2
XIII	S-MART	transcript	703579	706887	.	-	.	seqedit=false;p_id=P575;gene_id=YMR218C;tss_id=TSS4693;nbOverlaps=0;ID=YMR218C;Name=TRS130
VIII	S-MART	transcript	224030	225169	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:12254:10635#0--HWUSI-EAS1656_0009_FC:3:60:18755:7260#0--HWUSI-EAS1656_000;p_id=P1877;gene_id=YHR063C;tss_id=TSS2010;nbOverlaps=521;ID=YHR063C;Name=PAN5
XIII	S-MART	transcript	811089	811196	.	+	.	seqedit=false;p_id=P4038;gene_id=YMR272W-B;tss_id=TSS6318;nbOverlaps=0;ID=YMR272W-B;Name=YMR272W-B
XIII	S-MART	transcript	811233	813980	.	-	.	seqedit=false;p_id=P4157;gene_id=YMR273C;tss_id=TSS4090;nbOverlaps=0;ID=YMR273C;Name=ZDS1
XIII	S-MART	transcript	814364	815311	.	-	.	seqedit=false;p_id=P4746;gene_id=YMR274C;tss_id=TSS3410;nbOverlaps=0;ID=YMR274C;Name=RCE1
XV	S-MART	transcript	1009224	1009712	.	-	.	seqedit=false;p_id=P2857;gene_id=YOR357C;tss_id=TSS5120;nbOverlaps=0;ID=YOR357C;Name=SNX3
XIII	S-MART	transcript	815651	818581	.	-	.	seqedit=false;p_id=P3034;gene_id=YMR275C;tss_id=TSS4741;nbOverlaps=0;ID=YMR275C;Name=BUL1
XIII	S-MART	transcript	818827	819948	.	+	.	seqedit=false;p_id=P805;gene_id=YMR276W;tss_id=TSS5859;nbOverlaps=0;ID=YMR276W;Name=DSK2
XIII	S-MART	transcript	820256	822454	.	+	.	seqedit=false;p_id=P6140;gene_id=YMR277W;tss_id=TSS1774;nbOverlaps=0;ID=YMR277W;Name=FCP1
XIII	S-MART	transcript	822763	824631	.	+	.	seqedit=false;p_id=P3078;gene_id=YMR278W;tss_id=TSS6182;nbOverlaps=0;ID=YMR278W;Name=PGM3
XIII	S-MART	transcript	827028	831329	.	-	.	seqedit=false;p_id=P2881;gene_id=YMR280C;tss_id=TSS3805;nbOverlaps=0;ID=YMR280C;Name=CAT8
XIII	S-MART	transcript	824729	826351	.	-	.	seqedit=false;p_id=P2189;gene_id=YMR279C;tss_id=TSS1636;nbOverlaps=0;ID=YMR279C;Name=YMR279C
XV	S-MART	transcript	1010161	1010889	.	+	.	seqedit=false;p_id=P143;gene_id=YOR358W;tss_id=TSS5239;nbOverlaps=0;ID=YOR358W;Name=HAP5
XIII	S-MART	transcript	832339	833253	.	+	.	seqedit=false;p_id=P6006;gene_id=YMR281W;tss_id=TSS7064;nbOverlaps=0;ID=YMR281W;Name=GPI12
XIII	S-MART	transcript	833356	835098	.	-	.	seqedit=false;p_id=P5487;gene_id=YMR282C;tss_id=TSS6463;nbOverlaps=0;ID=YMR282C;Name=AEP2
XIII	S-MART	transcript	835326	836867	.	-	.	seqedit=false;p_id=P2893;gene_id=YMR283C;tss_id=TSS4660;nbOverlaps=0;ID=YMR283C;Name=RIT1
XIII	S-MART	transcript	838187	839995	.	+	.	seqedit=false;p_id=P4419;gene_id=YMR284W;tss_id=TSS5849;nbOverlaps=0;ID=YMR284W;Name=YKU70
XIII	S-MART	transcript	840144	841691	.	-	.	seqedit=false;p_id=P1332;gene_id=YMR285C;tss_id=TSS5007;nbOverlaps=0;ID=YMR285C;Name=NGL2
XIII	S-MART	transcript	841942	842202	.	+	.	seqedit=false;p_id=P6424;gene_id=YMR286W;tss_id=TSS2783;nbOverlaps=0;ID=YMR286W;Name=MRPL33
XV	S-MART	transcript	1011189	1012760	.	+	.	seqedit=false;p_id=P3222;gene_id=YOR359W;tss_id=TSS978;nbOverlaps=0;ID=YOR359W;Name=VTS1
XIII	S-MART	transcript	842436	845345	.	-	.	seqedit=false;p_id=P36;gene_id=YMR287C;tss_id=TSS3856;nbOverlaps=0;ID=YMR287C;Name=DSS1
XIII	S-MART	transcript	845571	848486	.	+	.	seqedit=false;p_id=P1973;gene_id=YMR288W;tss_id=TSS3549;nbOverlaps=0;ID=YMR288W;Name=HSH155
XIII	S-MART	transcript	848685	849809	.	+	.	seqedit=false;p_id=P5806;gene_id=YMR289W;tss_id=TSS2857;nbOverlaps=0;ID=YMR289W;Name=ABZ2
XIII	S-MART	transcript	850074	851591	.	-	.	seqedit=false;p_id=P2753;gene_id=YMR290C;tss_id=TSS6290;nbOverlaps=0;ID=YMR290C;Name=HAS1
XIII	S-MART	transcript	650036	650812	.	+	.	seqedit=false;p_id=P2368;gene_id=YMR193W;tss_id=TSS1917;nbOverlaps=0;ID=YMR193W;Name=MRPL24
XIII	S-MART	transcript	851422	851769	.	+	.	seqedit=false;p_id=P1157;gene_id=YMR290W-A;tss_id=TSS311;nbOverlaps=0;ID=YMR290W-A;Name=YMR290W-A
XIII	S-MART	transcript	852630	854390	.	+	.	seqedit=false;p_id=P1248;gene_id=YMR291W;tss_id=TSS1773;nbOverlaps=0;ID=YMR291W;Name=TDA1
XV	S-MART	transcript	1013241	1014821	.	-	.	seqedit=false;p_id=P3766;gene_id=YOR360C;tss_id=TSS544;nbOverlaps=0;ID=YOR360C;Name=PDE2
XIII	S-MART	transcript	854795	855293	.	+	.	seqedit=false;p_id=P92;gene_id=YMR292W;tss_id=TSS1671;nbOverlaps=0;ID=YMR292W;Name=GOT1
XIII	S-MART	exon	854795	854816	.	+	.	ID=YMR292W-exon1;Name=GOT1-exon1;Parent=YMR292W
XIII	S-MART	exon	854899	855293	.	+	.	ID=YMR292W-exon2;Name=GOT1-exon2;Parent=YMR292W
XIII	S-MART	transcript	855399	856793	.	-	.	seqedit=false;p_id=P2746;gene_id=YMR293C;tss_id=TSS737;nbOverlaps=0;ID=YMR293C;Name=HER2
XIII	S-MART	transcript	856966	858087	.	+	.	seqedit=false;p_id=P2110;gene_id=YMR294W;tss_id=TSS2080;nbOverlaps=0;ID=YMR294W;Name=JNM1
XIII	S-MART	transcript	858209	858568	.	+	.	seqedit=false;p_id=P6257;gene_id=YMR294W-A;tss_id=TSS3037;nbOverlaps=0;ID=YMR294W-A;Name=YMR294W-A
XV	S-MART	transcript	1015361	1017652	.	-	.	seqedit=false;p_id=P373;gene_id=YOR361C;tss_id=TSS4472;nbOverlaps=0;ID=YOR361C;Name=PRT1
XIV	S-MART	transcript	647432	648937	.	+	.	seqedit=false;p_id=P1259;gene_id=YNR012W;tss_id=TSS6069;nbOverlaps=0;ID=YNR012W;Name=URK1
XIII	S-MART	transcript	859215	860891	.	-	.	seqedit=false;p_id=P2306;gene_id=YMR296C;tss_id=TSS4204;nbOverlaps=0;ID=YMR296C;Name=LCB1
XIII	S-MART	transcript	858297	858890	.	-	.	seqedit=false;p_id=P1217;gene_id=YMR295C;tss_id=TSS2885;nbOverlaps=0;ID=YMR295C;Name=YMR295C
XIII	S-MART	transcript	861922	863520	.	+	.	seqedit=false;p_id=P5755;gene_id=YMR297W;tss_id=TSS4045;nbOverlaps=0;ID=YMR297W;Name=PRC1
XIII	S-MART	transcript	863819	864271	.	+	.	seqedit=false;p_id=P3226;gene_id=YMR298W;tss_id=TSS1555;nbOverlaps=0;ID=YMR298W;Name=LIP1
XIII	S-MART	transcript	864412	865350	.	-	.	seqedit=false;p_id=P882;gene_id=YMR299C;tss_id=TSS1405;nbOverlaps=0;ID=YMR299C;Name=DYN3
XIII	S-MART	transcript	865559	867091	.	-	.	seqedit=false;p_id=P2414;gene_id=YMR300C;tss_id=TSS5236;nbOverlaps=0;ID=YMR300C;Name=ADE4
XV	S-MART	transcript	1017880	1018746	.	-	.	seqedit=false;p_id=P4299;gene_id=YOR362C;tss_id=TSS4414;nbOverlaps=0;ID=YOR362C;Name=PRE10
XIII	S-MART	transcript	867555	869627	.	-	.	seqedit=false;p_id=P5968;gene_id=YMR301C;tss_id=TSS1180;nbOverlaps=0;ID=YMR301C;Name=ATM1
XIII	S-MART	transcript	870073	872625	.	-	.	seqedit=false;p_id=P1077;gene_id=YMR302C;tss_id=TSS1784;nbOverlaps=0;ID=YMR302C;Name=YME2
XIII	S-MART	transcript	873291	874337	.	-	.	seqedit=false;p_id=P4176;gene_id=YMR303C;tss_id=TSS1292;nbOverlaps=0;ID=YMR303C;Name=ADH2
XIII	S-MART	transcript	878780	879130	.	-	.	seqedit=false;p_id=P1186;gene_id=YMR304C-A;tss_id=TSS2867;nbOverlaps=0;ID=YMR304C-A;Name=YMR304C-A
XVI	S-MART	transcript	573018	575102	.	+	.	seqedit=false;p_id=P3367;gene_id=YPR008W;tss_id=TSS5424;nbOverlaps=0;ID=YPR008W;Name=HAA1
XIII	S-MART	transcript	874987	878679	.	+	.	seqedit=false;p_id=P5457;gene_id=YMR304W;tss_id=TSS6574;nbOverlaps=0;ID=YMR304W;Name=UBP15
XIII	S-MART	transcript	879063	880232	.	-	.	seqedit=false;p_id=P3195;gene_id=YMR305C;tss_id=TSS181;nbOverlaps=0;ID=YMR305C;Name=SCW10
XV	S-MART	transcript	1020222	1023212	.	-	.	seqedit=false;p_id=P3342;gene_id=YOR363C;tss_id=TSS4867;nbOverlaps=0;ID=YOR363C;Name=PIP2
XIII	S-MART	transcript	886183	886572	.	-	.	seqedit=false;p_id=P166;gene_id=YMR306C-A;tss_id=TSS4990;nbOverlaps=0;ID=YMR306C-A;Name=YMR306C-A
XIII	S-MART	transcript	881159	886516	.	+	.	seqedit=false;p_id=P547;gene_id=YMR306W;tss_id=TSS6206;nbOverlaps=0;ID=YMR306W;Name=FKS3
XIII	S-MART	transcript	887731	887925	.	-	.	seqedit=false;p_id=P1028;gene_id=YMR307C-A;tss_id=TSS2138;nbOverlaps=0;ID=YMR307C-A;Name=YMR307C-A
XIII	S-MART	transcript	887003	888682	.	+	.	seqedit=false;p_id=P4925;gene_id=YMR307W;tss_id=TSS2036;nbOverlaps=0;ID=YMR307W;Name=GAS1
XIII	S-MART	transcript	888952	892221	.	-	.	seqedit=false;p_id=P2709;gene_id=YMR308C;tss_id=TSS6457;nbOverlaps=0;ID=YMR308C;Name=PSE1
XIII	S-MART	transcript	892988	895426	.	-	.	seqedit=false;p_id=P4991;gene_id=YMR309C;tss_id=TSS1388;nbOverlaps=0;ID=YMR309C;Name=NIP1
XV	S-MART	transcript	1026007	1026609	.	+	.	seqedit=false;p_id=P2751;gene_id=YOR367W;tss_id=TSS6247;nbOverlaps=0;ID=YOR367W;Name=SCP1
XIII	S-MART	transcript	896914	897603	.	-	.	seqedit=false;p_id=P4495;gene_id=YMR311C;tss_id=TSS6348;nbOverlaps=0;ID=YMR311C;Name=GLC8
XIII	S-MART	transcript	895716	896669	.	-	.	seqedit=false;p_id=P6096;gene_id=YMR310C;tss_id=TSS1297;nbOverlaps=0;ID=YMR310C;Name=YMR310C
XIII	S-MART	transcript	898405	899226	.	+	.	seqedit=false;p_id=P5770;gene_id=YMR312W;tss_id=TSS5029;nbOverlaps=0;ID=YMR312W;Name=ELP6
XIII	S-MART	transcript	899379	901307	.	-	.	seqedit=false;p_id=P1536;gene_id=YMR313C;tss_id=TSS2841;nbOverlaps=0;ID=YMR313C;Name=TGL3
XIII	S-MART	transcript	901709	902413	.	+	.	seqedit=false;p_id=P3088;gene_id=YMR314W;tss_id=TSS5960;nbOverlaps=0;ID=YMR314W;Name=PRE5
XIII	S-MART	transcript	904286	904393	.	+	.	seqedit=false;p_id=P1171;gene_id=YMR315W-A;tss_id=TSS2208;nbOverlaps=0;ID=YMR315W-A;Name=YMR315W-A
XV	S-MART	transcript	1023371	1023739	.	+	.	seqedit=false;p_id=P2912;gene_id=YOR364W;tss_id=TSS6386;nbOverlaps=0;ID=YOR364W;Name=YOR364W
XIII	S-MART	transcript	902800	903849	.	+	.	seqedit=false;p_id=P5721;gene_id=YMR315W;tss_id=TSS7021;nbOverlaps=0;ID=YMR315W;Name=YMR315W
XIII	S-MART	transcript	905662	905973	.	-	.	seqedit=false;p_id=P6117;gene_id=YMR316C-A;tss_id=TSS66;nbOverlaps=0;ID=YMR316C-A;Name=YMR316C-A
XIII	S-MART	transcript	907321	907629	.	-	.	seqedit=false;p_id=P3490;gene_id=YMR316C-B;tss_id=TSS3886;nbOverlaps=0;ID=YMR316C-B;Name=YMR316C-B
XIII	S-MART	transcript	904825	905835	.	+	.	seqedit=false;p_id=P5928;gene_id=YMR316W;tss_id=TSS4676;nbOverlaps=0;ID=YMR316W;Name=DIA1
XIII	S-MART	transcript	911061	912143	.	-	.	seqedit=false;p_id=P6325;gene_id=YMR318C;tss_id=TSS98;nbOverlaps=0;ID=YMR318C;Name=ADH6
XIII	S-MART	transcript	907364	910786	.	+	.	seqedit=false;p_id=P4447;gene_id=YMR317W;tss_id=TSS1786;nbOverlaps=0;ID=YMR317W;Name=YMR317W
XV	S-MART	transcript	1023461	1025572	.	-	.	seqedit=false;p_id=P4463;gene_id=YOR365C;tss_id=TSS5667;nbOverlaps=0;ID=YOR365C;Name=YOR365C
XIII	S-MART	transcript	912880	914538	.	-	.	seqedit=false;p_id=P3613;gene_id=YMR319C;tss_id=TSS4671;nbOverlaps=0;ID=YMR319C;Name=FET4
XIII	S-MART	transcript	918366	919079	.	-	.	seqedit=false;p_id=P3414;gene_id=YMR322C;tss_id=TSS1088;nbOverlaps=0;ID=YMR322C;Name=SNO4
XIII	S-MART	transcript	916746	917051	.	+	.	seqedit=false;p_id=P4363;gene_id=YMR320W;tss_id=TSS6157;nbOverlaps=0;ID=YMR320W;Name=YMR320W
XIII	S-MART	transcript	917579	917896	.	-	.	seqedit=false;p_id=P2311;gene_id=YMR321C;tss_id=TSS1147;nbOverlaps=0;ID=YMR321C;Name=YMR321C
XIII	S-MART	transcript	920088	921401	.	+	.	seqedit=false;p_id=P5308;gene_id=YMR323W;tss_id=TSS972;nbOverlaps=0;ID=YMR323W;Name=ERR3
XV	S-MART	transcript	288420	288572	.	+	.	seqedit=false;p_id=P3045;gene_id=YOL019W-A;tss_id=TSS1538;nbOverlaps=0;ID=YOL019W-A;Name=YOL019W-A
XV	S-MART	transcript	1025256	1025609	.	+	.	seqedit=false;p_id=P2424;gene_id=YOR366W;tss_id=TSS6565;nbOverlaps=0;ID=YOR366W;Name=YOR366W
XI	S-MART	transcript	109269	110129	.	+	.	seqedit=false;p_id=P3543;gene_id=YKL180W;tss_id=TSS1111;nbOverlaps=0;ID=YKL180W;Name=RPL17A
XI	S-MART	exon	109269	109577	.	+	.	ID=YKL180W-exon1;Name=RPL17A-exon1;Parent=YKL180W
XI	S-MART	exon	109884	110129	.	+	.	ID=YKL180W-exon2;Name=RPL17A-exon2;Parent=YKL180W
V	S-MART	transcript	375215	377614	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:14367:13769#0--HWUSI-EAS1656_0009_FC:3:17:9915:12272#0--HWUSI-EAS1656_00;p_id=P6167;gene_id=YER109C;tss_id=TSS366;nbOverlaps=158;ID=YER109C;Name=FLO8
V	S-MART	transcript	378762	382103	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:115:17825:12175#0--HWUSI-EAS1656_0009_FC:3:77:8844:6599#0--HWUSI-EAS1656_000;p_id=P5338;gene_id=YER110C;tss_id=TSS4855;nbOverlaps=7602;ID=YER110C;Name=KAP123
XI	S-MART	transcript	107316	108599	.	+	.	seqedit=false;p_id=P930;gene_id=YKL181W;tss_id=TSS140;nbOverlaps=0;ID=YKL181W;Name=PRS1
XI	S-MART	transcript	100671	106826	.	+	.	seqedit=false;p_id=P608;gene_id=YKL182W;tss_id=TSS5098;nbOverlaps=0;ID=YKL182W;Name=FAS1
XV	S-MART	transcript	1026843	1028048	.	+	.	seqedit=false;p_id=P1491;gene_id=YOR368W;tss_id=TSS5876;nbOverlaps=0;ID=YOR368W;Name=RAD17
XI	S-MART	transcript	98395	98607	.	-	.	seqedit=false;p_id=P1628;gene_id=YKL183C-A;tss_id=TSS2910;nbOverlaps=0;ID=YKL183C-A;Name=YKL183C-A
XI	S-MART	transcript	98721	99641	.	+	.	seqedit=false;p_id=P6352;gene_id=YKL183W;tss_id=TSS1712;nbOverlaps=0;ID=YKL183W;Name=LOT5
XI	S-MART	transcript	96757	98157	.	+	.	seqedit=false;p_id=P3074;gene_id=YKL184W;tss_id=TSS2309;nbOverlaps=0;ID=YKL184W;Name=SPE1
V	S-MART	transcript	395348	396172	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:64:16320:6768#0--HWUSI-EAS1656_0009_FC:3:87:13234:14776#0--HWUSI-EAS1656_000;p_id=P1456;gene_id=YER116C;tss_id=TSS2589;nbOverlaps=50;ID=YER116C;Name=SLX8
XI	S-MART	transcript	92744	93298	.	-	.	seqedit=false;p_id=P599;gene_id=YKL186C;tss_id=TSS3300;nbOverlaps=0;ID=YKL186C;Name=MTR2
XI	S-MART	transcript	86225	88786	.	-	.	seqedit=false;p_id=P4241;gene_id=YKL188C;tss_id=TSS1648;nbOverlaps=0;ID=YKL188C;Name=PXA2
XV	S-MART	transcript	1028194	1028625	.	-	.	seqedit=false;p_id=P135;gene_id=YOR369C;tss_id=TSS521;nbOverlaps=0;ID=YOR369C;Name=RPS12
XI	S-MART	transcript	89284	91536	.	-	.	seqedit=false;p_id=P1024;gene_id=YKL187C;tss_id=TSS1051;nbOverlaps=0;ID=YKL187C;Name=YKL187C
XI	S-MART	transcript	84704	85903	.	+	.	seqedit=false;p_id=P5406;gene_id=YKL189W;tss_id=TSS1017;nbOverlaps=0;ID=YKL189W;Name=HYM1
XI	S-MART	transcript	82947	83550	.	+	.	seqedit=false;p_id=P5283;gene_id=YKL190W;tss_id=TSS2724;nbOverlaps=0;ID=YKL190W;Name=CNB1
XI	S-MART	exon	82947	82998	.	+	.	ID=YKL190W-exon1;Name=CNB1-exon1;Parent=YKL190W
XI	S-MART	exon	83075	83550	.	+	.	ID=YKL190W-exon2;Name=CNB1-exon2;Parent=YKL190W
V	S-MART	transcript	400867	401238	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:23:2144:6722#0--HWUSI-EAS1656_0009_FC:3:23:15093:19517#0--HWUSI-EAS1656_0009;p_id=P5276;gene_id=YER119C-A;tss_id=TSS474;nbOverlaps=49;ID=YER119C-A;Name=YER119C-A
V	S-MART	transcript	401135	401869	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:13384:6106#0--HWUSI-EAS1656_0009_FC:3:11:8477:18822#0--HWUSI-EAS1656_0009;p_id=P2230;gene_id=YER120W;tss_id=TSS3222;nbOverlaps=694;ID=YER120W;Name=SCS2
XI	S-MART	transcript	81035	82639	.	+	.	seqedit=false;p_id=P3981;gene_id=YKL191W;tss_id=TSS6960;nbOverlaps=0;ID=YKL191W;Name=DPH2
XV	S-MART	transcript	1029183	1030994	.	-	.	seqedit=false;p_id=P3923;gene_id=YOR370C;tss_id=TSS3729;nbOverlaps=0;ID=YOR370C;Name=MRS6
XI	S-MART	transcript	80160	80537	.	-	.	seqedit=false;p_id=P6586;gene_id=YKL192C;tss_id=TSS2676;nbOverlaps=0;ID=YKL192C;Name=ACP1
XI	S-MART	transcript	78866	79882	.	-	.	seqedit=false;p_id=P2810;gene_id=YKL193C;tss_id=TSS4113;nbOverlaps=0;ID=YKL193C;Name=SDS22
XI	S-MART	transcript	77258	78646	.	-	.	seqedit=false;p_id=P3151;gene_id=YKL194C;tss_id=TSS5578;nbOverlaps=0;ID=YKL194C;Name=MST1
XI	S-MART	transcript	75821	77032	.	+	.	seqedit=false;p_id=P159;gene_id=YKL195W;tss_id=TSS3009;nbOverlaps=0;ID=YKL195W;Name=MIA40
XI	S-MART	transcript	74932	75534	.	-	.	seqedit=false;p_id=P857;gene_id=YKL196C;tss_id=TSS195;nbOverlaps=0;ID=YKL196C;Name=YKT6
XI	S-MART	transcript	70734	73865	.	-	.	seqedit=false;p_id=P3770;gene_id=YKL197C;tss_id=TSS1818;nbOverlaps=0;ID=YKL197C;Name=PEX1
XV	S-MART	transcript	1031489	1034182	.	-	.	seqedit=false;p_id=P3837;gene_id=YOR371C;tss_id=TSS5182;nbOverlaps=0;ID=YOR371C;Name=GPB1
XI	S-MART	transcript	68232	70220	.	-	.	seqedit=false;p_id=P4001;gene_id=YKL198C;tss_id=TSS5249;nbOverlaps=0;ID=YKL198C;Name=PTK1
XI	S-MART	transcript	63930	67466	.	-	.	seqedit=false;p_id=P4999;gene_id=YKL201C;tss_id=TSS6679;nbOverlaps=0;ID=YKL201C;Name=MNN4
XI	S-MART	transcript	55935	63359	.	-	.	seqedit=false;p_id=P2211;gene_id=YKL203C;tss_id=TSS4511;nbOverlaps=0;ID=YKL203C;Name=TOR2
XI	S-MART	transcript	63821	64402	.	+	.	seqedit=false;p_id=P5170;gene_id=YKL202W;tss_id=TSS1496;nbOverlaps=0;ID=YKL202W;Name=YKL202W
XI	S-MART	transcript	53704	55602	.	+	.	seqedit=false;p_id=P6638;gene_id=YKL204W;tss_id=TSS289;nbOverlaps=0;ID=YKL204W;Name=EAP1
II	S-MART	transcript	301519	301821	.	+	.	seqedit=false;p_id=P2687;gene_id=YBR032W;tss_id=TSS6556;nbOverlaps=0;ID=YBR032W;Name=YBR032W
XI	S-MART	transcript	50051	53353	.	+	.	seqedit=false;p_id=P3875;gene_id=YKL205W;tss_id=TSS4563;nbOverlaps=0;ID=YKL205W;Name=LOS1
XV	S-MART	transcript	1034807	1036471	.	-	.	seqedit=false;p_id=P5668;gene_id=YOR372C;tss_id=TSS1992;nbOverlaps=0;ID=YOR372C;Name=NDD1
XI	S-MART	transcript	49006	49809	.	-	.	seqedit=false;p_id=P2007;gene_id=YKL206C;tss_id=TSS247;nbOverlaps=0;ID=YKL206C;Name=ADD66
XI	S-MART	transcript	48194	48955	.	+	.	seqedit=false;p_id=P4415;gene_id=YKL207W;tss_id=TSS3015;nbOverlaps=0;ID=YKL207W;Name=AIM27
XI	S-MART	transcript	47157	47972	.	+	.	seqedit=false;p_id=P794;gene_id=YKL208W;tss_id=TSS455;nbOverlaps=0;ID=YKL208W;Name=CBT1
V	S-MART	transcript	439616	440971	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:14207:9993#0--HWUSI-EAS1656_0009_FC:3:53:14620:7929#0--HWUSI-EAS1656_0009;p_id=P6648;gene_id=YER136W;tss_id=TSS317;nbOverlaps=646;ID=YER136W;Name=GDI1
XI	S-MART	transcript	39163	42237	.	+	.	seqedit=false;p_id=P6595;gene_id=YKL210W;tss_id=TSS1442;nbOverlaps=0;ID=YKL210W;Name=UBA1
XI	S-MART	transcript	36699	38153	.	-	.	seqedit=false;p_id=P1258;gene_id=YKL211C;tss_id=TSS6415;nbOverlaps=0;ID=YKL211C;Name=TRP3
XV	S-MART	transcript	1036834	1039389	.	+	.	seqedit=false;p_id=P5037;gene_id=YOR373W;tss_id=TSS2162;nbOverlaps=0;ID=YOR373W;Name=NUD1
XI	S-MART	transcript	34543	36414	.	+	.	seqedit=false;p_id=P5677;gene_id=YKL212W;tss_id=TSS5255;nbOverlaps=0;ID=YKL212W;Name=SAC1
XI	S-MART	transcript	31960	34107	.	-	.	seqedit=false;p_id=P1610;gene_id=YKL213C;tss_id=TSS6417;nbOverlaps=0;ID=YKL213C;Name=DOA1
XI	S-MART	transcript	31082	31693	.	-	.	seqedit=false;p_id=P4907;gene_id=YKL214C;tss_id=TSS1758;nbOverlaps=0;ID=YKL214C;Name=YRA2
XI	S-MART	transcript	26827	30687	.	-	.	seqedit=false;p_id=P4084;gene_id=YKL215C;tss_id=TSS1331;nbOverlaps=0;ID=YKL215C;Name=OXP1
XI	S-MART	transcript	25215	26159	.	+	.	seqedit=false;p_id=P2147;gene_id=YKL216W;tss_id=TSS4751;nbOverlaps=0;ID=YKL216W;Name=URA1
XI	S-MART	transcript	22234	24084	.	+	.	seqedit=false;p_id=P5180;gene_id=YKL217W;tss_id=TSS2501;nbOverlaps=0;ID=YKL217W;Name=JEN1
XV	S-MART	transcript	1039840	1041399	.	+	.	seqedit=false;p_id=P2780;gene_id=YOR374W;tss_id=TSS1289;nbOverlaps=0;ID=YOR374W;Name=ALD4
XI	S-MART	transcript	17359	18339	.	-	.	seqedit=false;p_id=P4154;gene_id=YKL218C;tss_id=TSS518;nbOverlaps=0;ID=YKL218C;Name=SRY1
XI	S-MART	transcript	14485	15708	.	+	.	seqedit=false;p_id=P4619;gene_id=YKL219W;tss_id=TSS1811;nbOverlaps=0;ID=YKL219W;Name=COS9
XI	S-MART	transcript	9091	11226	.	-	.	seqedit=false;p_id=P1646;gene_id=YKL220C;tss_id=TSS873;nbOverlaps=0;ID=YKL220C;Name=FRE2
XI	S-MART	transcript	6107	7528	.	+	.	seqedit=false;p_id=P2653;gene_id=YKL221W;tss_id=TSS5011;nbOverlaps=0;ID=YKL221W;Name=MCH2
XI	S-MART	transcript	1810	2181	.	-	.	seqedit=false;p_id=P4815;gene_id=YKL224C;tss_id=TSS5158;nbOverlaps=0;ID=YKL224C;Name=PAU16
II	S-MART	transcript	90223	90531	.	-	.	seqedit=false;p_id=P5093;gene_id=YBL071C;tss_id=TSS2282;nbOverlaps=0;ID=YBL071C;Name=YBL071C
XV	S-MART	transcript	1041678	1043042	.	-	.	seqedit=false;p_id=P5762;gene_id=YOR375C;tss_id=TSS31;nbOverlaps=0;ID=YOR375C;Name=GDH1
XI	S-MART	transcript	2389	2721	.	+	.	seqedit=false;p_id=P4735;gene_id=YKL223W;tss_id=TSS5397;nbOverlaps=0;ID=YKL223W;Name=YKL223W
V	S-MART	transcript	460526	461740	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:8649:10800#0--HWUSI-EAS1656_0009_FC:3:16:16416:8085#0--HWUSI-EAS1656_000;p_id=P3174;gene_id=YER145C;tss_id=TSS4847;nbOverlaps=3571;ID=YER145C;Name=FTR1
II	S-MART	transcript	391805	392293	.	-	.	seqedit=false;p_id=P3744;gene_id=YBR077C;tss_id=TSS4710;nbOverlaps=0;ID=YBR077C;Name=SLM4
V	S-MART	transcript	462386	462823	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:10962:12561#0--HWUSI-EAS1656_0009_FC:3:94:10756:4995#0--HWUSI-EAS1656_000;p_id=P5663;gene_id=YER145C-A;tss_id=TSS3881;nbOverlaps=129;ID=YER145C-A;Name=YER145C-A
I	S-MART	transcript	57488	57796	.	-	.	seqedit=false;p_id=P1936;gene_id=YAL045C;tss_id=TSS5020;nbOverlaps=0;ID=YAL045C;Name=YAL045C
V	S-MART	transcript	462585	462866	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:10962:12561#0--HWUSI-EAS1656_0009_FC:3:94:10756:4995#0--HWUSI-EAS1656_000;p_id=P335;gene_id=YER146W;tss_id=TSS2362;nbOverlaps=161;ID=YER146W;Name=LSM5
XIV	S-MART	transcript	220645	221421	.	+	.	seqedit=false;p_id=P5706;gene_id=YNL228W;tss_id=TSS846;nbOverlaps=0;ID=YNL228W;Name=YNL228W
V	S-MART	transcript	462968	464842	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:11818:6376#0--HWUSI-EAS1656_0009_FC:3:31:18480:15962#0--HWUSI-EAS1656_00;p_id=P6491;gene_id=YER147C;tss_id=TSS3312;nbOverlaps=145;ID=YER147C;Name=SCC4
V	S-MART	transcript	465203	465613	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:13:16936:7092#0--HWUSI-EAS1656_0009_FC:3:109:13397:8586#0--HWUSI-EAS1656_000;p_id=P2394;gene_id=YER147C-A;tss_id=TSS6461;nbOverlaps=192;ID=YER147C-A;Name=YER147C-A
XV	S-MART	transcript	1045196	1045351	.	+	.	seqedit=false;p_id=P4748;gene_id=YOR376W-A;tss_id=TSS6916;nbOverlaps=0;ID=YOR376W-A;Name=YOR376W-A
XIV	S-MART	transcript	652465	653103	.	+	.	seqedit=false;p_id=P4276;gene_id=YNR014W;tss_id=TSS4500;nbOverlaps=0;ID=YNR014W;Name=YNR014W
V	S-MART	transcript	465303	466025	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:7035:15414#0--HWUSI-EAS1656_0009_FC:3:81:3757:13401#0--HWUSI-EAS1656_0009;p_id=P6382;gene_id=YER148W;tss_id=TSS2753;nbOverlaps=345;ID=YER148W;Name=SPT15
V	S-MART	transcript	466185	466763	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:9193:9114#0--HWUSI-EAS1656_0009_FC:3:30:8480:11561#0--HWUSI-EAS1656_0009_;p_id=P4532;gene_id=YER148W-A;tss_id=TSS5554;nbOverlaps=102;ID=YER148W-A;Name=YER148W-A
XI	S-MART	transcript	450423	451217	.	-	.	seqedit=false;p_id=P2093;gene_id=YKR006C;tss_id=TSS185;nbOverlaps=0;ID=YKR006C;Name=MRPL13
XI	S-MART	transcript	448521	450167	.	-	.	seqedit=false;p_id=P1001;gene_id=YKR005C;tss_id=TSS2701;nbOverlaps=0;ID=YKR005C;Name=YKR005C
XI	S-MART	exon	448521	449951	.	-	.	ID=YKR005C-exon1;Name=YKR005C-exon1;Parent=YKR005C
XI	S-MART	exon	450021	450167	.	-	.	ID=YKR005C-exon2;Name=YKR005C-exon2;Parent=YKR005C
V	S-MART	transcript	469686	472424	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:4585:13843#0--HWUSI-EAS1656_0009_FC:3:112:16945:14613#0--HWUSI-EAS1656_0;p_id=P2346;gene_id=YER151C;tss_id=TSS1313;nbOverlaps=257;ID=YER151C;Name=UBP3
V	S-MART	transcript	473485	474051	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:16041:7708#0--HWUSI-EAS1656_0009_FC:3:16:11899:20371#0--HWUSI-EAS1656_000;p_id=P6202;gene_id=YER152W-A;tss_id=TSS6004;nbOverlaps=53;ID=YER152W-A;Name=YER152W-A
XV	S-MART	transcript	1043191	1043559	.	+	.	seqedit=false;p_id=P3612;gene_id=YOR376W;tss_id=TSS2314;nbOverlaps=0;ID=YOR376W;Name=YOR376W
XI	S-MART	transcript	451434	451988	.	+	.	seqedit=false;p_id=P5321;gene_id=YKR007W;tss_id=TSS1601;nbOverlaps=0;ID=YKR007W;Name=MEH1
XI	S-MART	transcript	452201	454078	.	+	.	seqedit=false;p_id=P3275;gene_id=YKR008W;tss_id=TSS2026;nbOverlaps=0;ID=YKR008W;Name=RSC4
XI	S-MART	transcript	454352	457054	.	-	.	seqedit=false;p_id=P768;gene_id=YKR009C;tss_id=TSS3460;nbOverlaps=0;ID=YKR009C;Name=FOX2
XI	S-MART	transcript	458924	461239	.	-	.	seqedit=false;p_id=P4421;gene_id=YKR010C;tss_id=TSS2031;nbOverlaps=0;ID=YKR010C;Name=TOF2
XV	S-MART	transcript	226611	226681	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)O1;tss_id=TSS1785;nbOverlaps=102;ID=tG(GCC)O1;Name=tG(GCC)O1
XV	S-MART	transcript	1046226	1047803	.	+	.	seqedit=false;p_id=P1652;gene_id=YOR377W;tss_id=TSS6656;nbOverlaps=0;ID=YOR377W;Name=ATF1
XIII	S-MART	transcript	183898	183968	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)M;tss_id=TSS2511;nbOverlaps=102;ID=tG(GCC)M;Name=tG(GCC)M
XV	S-MART	transcript	282164	282234	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)O2;tss_id=TSS6250;nbOverlaps=102;ID=tG(GCC)O2;Name=SUF17
XVI	S-MART	transcript	572269	572339	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)P1;tss_id=TSS2805;nbOverlaps=102;ID=tG(GCC)P1;Name=tG(GCC)P1
XVI	S-MART	transcript	860379	860449	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)P2;tss_id=TSS2704;nbOverlaps=107;ID=tG(GCC)P2;Name=tG(GCC)P2
VII	S-MART	transcript	779616	779687	.	+	.	seqedit=false;gene_id=tG(UCC)G;tss_id=TSS5842;nbOverlaps=0;ID=tG(UCC)G;Name=SUF4
XIV	S-MART	transcript	96241	96312	.	-	.	seqedit=false;gene_id=tG(UCC)N;tss_id=TSS5391;nbOverlaps=0;ID=tG(UCC)N;Name=SUF6
XV	S-MART	transcript	1051290	1052930	.	+	.	seqedit=false;p_id=P4749;gene_id=YOR380W;tss_id=TSS4588;nbOverlaps=0;ID=YOR380W;Name=RDR1
XV	S-MART	transcript	110962	111033	.	-	.	seqedit=false;gene_id=tG(UCC)O;tss_id=TSS2802;nbOverlaps=0;ID=tG(UCC)O;Name=SUF1
V	S-MART	transcript	207357	207428	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)E1;tss_id=TSS3474;nbOverlaps=738;ID=tH(GUG)E1;Name=tH(GUG)E1
Mito	S-MART	transcript	67468	67542	.	+	.	seqedit=false;gene_id=tG(UCC)Q;tss_id=TSS968;nbOverlaps=0;ID=tG(UCC)Q;Name=tG(UCC)Q
V	S-MART	transcript	434541	434612	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)E2;tss_id=TSS3290;nbOverlaps=701;ID=tH(GUG)E2;Name=tH(GUG)E2
VII	S-MART	transcript	110625	110696	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)G1;tss_id=TSS2586;nbOverlaps=692;ID=tH(GUG)G1;Name=tH(GUG)G1
VII	S-MART	transcript	319781	319852	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)G2;tss_id=TSS1223;nbOverlaps=695;ID=tH(GUG)G2;Name=tH(GUG)G2
XV	S-MART	transcript	1049511	1051058	.	+	.	seqedit=false;p_id=P1453;gene_id=YOR378W;tss_id=TSS3424;nbOverlaps=0;ID=YOR378W;Name=YOR378W
V	S-MART	transcript	443202	443275	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:90:13093:8737#0--HWUSI-EAS1656_000;gene_id=tI(AAU)E1;tss_id=TSS5108;nbOverlaps=16;ID=tI(AAU)E1;Name=tI(AAU)E1
VIII	S-MART	transcript	62755	62826	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)H;tss_id=TSS6781;nbOverlaps=703;ID=tH(GUG)H;Name=tH(GUG)H
XI	S-MART	transcript	313401	313472	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)K;tss_id=TSS5556;nbOverlaps=695;ID=tH(GUG)K;Name=tH(GUG)K
XIII	S-MART	transcript	363064	363135	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:4767:17602#0--HWUSI-EAS1656_0009_FC:3:64:4734:5995#0--HWUSI-EAS1656_0009_;gene_id=tH(GUG)M;tss_id=TSS5832;nbOverlaps=695;ID=tH(GUG)M;Name=tH(GUG)M
XIV	S-MART	transcript	217523	218662	.	-	.	seqedit=false;p_id=P5525;gene_id=YNL230C;tss_id=TSS5263;nbOverlaps=0;ID=YNL230C;Name=ELA1
Mito	S-MART	transcript	64596	64670	.	+	.	seqedit=false;gene_id=tH(GUG)Q;tss_id=TSS6178;nbOverlaps=0;ID=tH(GUG)Q;Name=tH(GUG)Q
II	S-MART	transcript	197494	197567	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;gene_id=tI(AAU)B;tss_id=TSS6315;nbOverlaps=14;ID=tI(AAU)B;Name=tI(AAU)B
XV	S-MART	transcript	1050726	1051064	.	-	.	seqedit=false;p_id=P3406;gene_id=YOR379C;tss_id=TSS5507;nbOverlaps=0;ID=YOR379C;Name=YOR379C
XIV	S-MART	transcript	654673	661374	.	-	.	seqedit=false;p_id=P175;gene_id=YNR016C;tss_id=TSS6688;nbOverlaps=0;ID=YNR016C;Name=ACC1
IV	S-MART	transcript	668007	668080	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)D;tss_id=TSS2462;nbOverlaps=14;ID=tI(AAU)D;Name=tI(AAU)D
V	S-MART	transcript	551285	551358	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:14245:1110#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)E2;tss_id=TSS3574;nbOverlaps=24;ID=tI(AAU)E2;Name=tI(AAU)E2
IX	S-MART	transcript	183440	183513	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)I1;tss_id=TSS3296;nbOverlaps=14;ID=tI(AAU)I1;Name=tI(AAU)I1
VII	S-MART	transcript	739122	739195	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;gene_id=tI(AAU)G;tss_id=TSS157;nbOverlaps=14;ID=tI(AAU)G;Name=tI(AAU)G
IX	S-MART	transcript	210665	210738	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:90:13093:8737#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)I2;tss_id=TSS6278;nbOverlaps=15;ID=tI(AAU)I2;Name=tI(AAU)I2
XII	S-MART	transcript	734802	734875	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;gene_id=tI(AAU)L1;tss_id=TSS970;nbOverlaps=15;ID=tI(AAU)L1;Name=tI(AAU)L1
XV	S-MART	transcript	1055545	1057680	.	+	.	seqedit=false;p_id=P539;gene_id=YOR381W;tss_id=TSS658;nbOverlaps=0;ID=YOR381W;Name=FRE3
XII	S-MART	transcript	1052071	1052144	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)L2;tss_id=TSS5023;nbOverlaps=14;ID=tI(AAU)L2;Name=tI(AAU)L2
XIV	S-MART	transcript	569867	569940	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)N1;tss_id=TSS5049;nbOverlaps=14;ID=tI(AAU)N1;Name=tI(AAU)N1
I	S-MART	transcript	76427	79435	.	+	.	seqedit=false;p_id=P171;gene_id=YAL035W;tss_id=TSS3471;nbOverlaps=0;ID=YAL035W;Name=FUN12
XIV	S-MART	transcript	602312	602385	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;gene_id=tI(AAU)N2;tss_id=TSS6498;nbOverlaps=14;ID=tI(AAU)N2;Name=tI(AAU)N2
XVI	S-MART	transcript	819529	819602	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;gene_id=tI(AAU)P1;tss_id=TSS792;nbOverlaps=14;ID=tI(AAU)P1;Name=tI(AAU)P1
XVI	S-MART	transcript	880296	880369	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:1265:14116#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009;gene_id=tI(AAU)P2;tss_id=TSS3516;nbOverlaps=14;ID=tI(AAU)P2;Name=tI(AAU)P2
IV	S-MART	transcript	1201750	1201822	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)D1;tss_id=TSS1272;nbOverlaps=100;ID=tK(CUU)D1;Name=tK(CUU)D1
XV	S-MART	transcript	1058423	1058590	.	+	.	seqedit=false;p_id=P5686;gene_id=YOR381W-A;tss_id=TSS2344;nbOverlaps=0;ID=YOR381W-A;Name=YOR381W-A
Mito	S-MART	transcript	70162	70237	.	+	.	seqedit=false;gene_id=tI(GAU)Q;tss_id=TSS4369;nbOverlaps=0;ID=tI(GAU)Q;Name=tI(GAU)Q
IV	S-MART	transcript	884361	884493	.	+	.	seqedit=false;gene_id=tI(UAU)D;tss_id=TSS903;nbOverlaps=0;ID=tI(UAU)D;Name=tI(UAU)D
IV	S-MART	exon	884361	884397	.	+	.	ID=tI(UAU)D-exon1;Name=tI(UAU)D-exon1;Parent=tI(UAU)D
IV	S-MART	exon	884458	884493	.	+	.	ID=tI(UAU)D-exon2;Name=tI(UAU)D-exon2;Parent=tI(UAU)D
XII	S-MART	transcript	605300	605432	.	-	.	seqedit=false;gene_id=tI(UAU)L;tss_id=TSS6859;nbOverlaps=0;ID=tI(UAU)L;Name=tI(UAU)L
XII	S-MART	exon	605300	605335	.	-	.	ID=tI(UAU)L-exon1;Name=tI(UAU)L-exon1;Parent=tI(UAU)L
XII	S-MART	exon	605396	605432	.	-	.	ID=tI(UAU)L-exon2;Name=tI(UAU)L-exon2;Parent=tI(UAU)L
XV	S-MART	transcript	1059531	1059992	.	+	.	seqedit=false;p_id=P1397;gene_id=YOR382W;tss_id=TSS1374;nbOverlaps=0;ID=YOR382W;Name=FIT2
III	S-MART	transcript	151284	151356	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)C;tss_id=TSS2620;nbOverlaps=112;ID=tK(CUU)C;Name=tK(CUU)C
IV	S-MART	transcript	1352466	1352538	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)D2;tss_id=TSS5634;nbOverlaps=105;ID=tK(CUU)D2;Name=tK(CUU)D2
V	S-MART	transcript	135425	135497	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)E1;tss_id=TSS951;nbOverlaps=122;ID=tK(CUU)E1;Name=tK(CUU)E1
V	S-MART	transcript	435752	435824	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)E2;tss_id=TSS3865;nbOverlaps=117;ID=tK(CUU)E2;Name=tK(CUU)E2
VII	S-MART	transcript	122269	122341	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)G1;tss_id=TSS4976;nbOverlaps=100;ID=tK(CUU)G1;Name=tK(CUU)G1
XV	S-MART	transcript	1060441	1061055	.	-	.	seqedit=false;p_id=P825;gene_id=YOR383C;tss_id=TSS5127;nbOverlaps=0;ID=YOR383C;Name=FIT3
VI	S-MART	transcript	226688	226760	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)F;tss_id=TSS6284;nbOverlaps=100;ID=tK(CUU)F;Name=tK(CUU)F
VII	S-MART	transcript	185714	185786	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)G2;tss_id=TSS5823;nbOverlaps=105;ID=tK(CUU)G2;Name=tK(CUU)G2
VII	S-MART	transcript	876394	876466	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)G3;tss_id=TSS6137;nbOverlaps=112;ID=tK(CUU)G3;Name=tK(CUU)G3
VII	S-MART	transcript	115488	115583	.	+	.	seqedit=false;gene_id=tK(UUU)G1;tss_id=TSS4793;nbOverlaps=0;ID=tK(UUU)G1;Name=tK(UUU)G1
VII	S-MART	exon	115488	115524	.	+	.	ID=tK(UUU)G1-exon1;Name=tK(UUU)G1-exon1;Parent=tK(UUU)G1
VII	S-MART	exon	115548	115583	.	+	.	ID=tK(UUU)G1-exon2;Name=tK(UUU)G1-exon2;Parent=tK(UUU)G1
XIV	S-MART	transcript	215987	217042	.	-	.	seqedit=false;p_id=P3064;gene_id=YNL231C;tss_id=TSS4336;nbOverlaps=0;ID=YNL231C;Name=PDR16
IX	S-MART	transcript	300228	300300	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)I;tss_id=TSS5703;nbOverlaps=105;ID=tK(CUU)I;Name=tK(CUU)I
X	S-MART	transcript	414966	415038	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)J;tss_id=TSS85;nbOverlaps=100;ID=tK(CUU)J;Name=tK(CUU)J
XV	S-MART	transcript	1061564	1063648	.	+	.	seqedit=false;p_id=P635;gene_id=YOR384W;tss_id=TSS2938;nbOverlaps=0;ID=YOR384W;Name=FRE5
XIV	S-MART	transcript	662913	663581	.	+	.	seqedit=false;p_id=P5373;gene_id=YNR017W;tss_id=TSS73;nbOverlaps=0;ID=YNR017W;Name=TIM23
XIII	S-MART	transcript	480621	480693	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)M;tss_id=TSS6837;nbOverlaps=100;ID=tK(CUU)M;Name=tK(CUU)M
XVI	S-MART	transcript	582062	582134	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)P;tss_id=TSS5434;nbOverlaps=112;ID=tK(CUU)P;Name=tK(CUU)P
IV	S-MART	transcript	359577	359672	.	+	.	seqedit=false;gene_id=tK(UUU)D;tss_id=TSS3088;nbOverlaps=0;ID=tK(UUU)D;Name=tK(UUU)D
IV	S-MART	exon	359577	359613	.	+	.	ID=tK(UUU)D-exon1;Name=tK(UUU)D-exon1;Parent=tK(UUU)D
IV	S-MART	exon	359637	359672	.	+	.	ID=tK(UUU)D-exon2;Name=tK(UUU)D-exon2;Parent=tK(UUU)D
XV	S-MART	transcript	1066839	1068536	.	+	.	seqedit=false;p_id=P5143;gene_id=YOR386W;tss_id=TSS3061;nbOverlaps=0;ID=YOR386W;Name=PHR1
I	S-MART	transcript	75043	76152	.	-	.	seqedit=false;p_id=P6102;gene_id=YAL036C;tss_id=TSS1918;nbOverlaps=0;ID=YAL036C;Name=RBG1
VII	S-MART	transcript	700953	701048	.	-	.	seqedit=false;gene_id=tK(UUU)G2;tss_id=TSS7058;nbOverlaps=0;ID=tK(UUU)G2;Name=tK(UUU)G2
VII	S-MART	exon	700953	700988	.	-	.	ID=tK(UUU)G2-exon1;Name=tK(UUU)G2-exon1;Parent=tK(UUU)G2
VII	S-MART	exon	701012	701048	.	-	.	ID=tK(UUU)G2-exon2;Name=tK(UUU)G2-exon2;Parent=tK(UUU)G2
I	S-MART	transcript	181141	181254	.	+	.	seqedit=false;gene_id=tL(CAA)A;tss_id=TSS6215;nbOverlaps=0;ID=tL(CAA)A;Name=SUP56
I	S-MART	exon	181141	181178	.	+	.	ID=tL(CAA)A-exon1;Name=SUP56-exon1;Parent=tL(CAA)A
I	S-MART	exon	181211	181254	.	+	.	ID=tL(CAA)A-exon2;Name=SUP56-exon2;Parent=tL(CAA)A
XV	S-MART	transcript	1065043	1065915	.	+	.	seqedit=false;p_id=P5348;gene_id=YOR385W;tss_id=TSS1919;nbOverlaps=0;ID=YOR385W;Name=YOR385W
XI	S-MART	transcript	578965	579060	.	+	.	seqedit=false;gene_id=tK(UUU)K;tss_id=TSS1727;nbOverlaps=0;ID=tK(UUU)K;Name=tK(UUU)K
XI	S-MART	exon	578965	579001	.	+	.	ID=tK(UUU)K-exon1;Name=tK(UUU)K-exon1;Parent=tK(UUU)K
XI	S-MART	exon	579025	579060	.	+	.	ID=tK(UUU)K-exon2;Name=tK(UUU)K-exon2;Parent=tK(UUU)K
XV	S-MART	transcript	1071793	1072923	.	-	.	seqedit=false;p_id=P2954;gene_id=YOR388C;tss_id=TSS5635;nbOverlaps=0;ID=YOR388C;Name=FDH1
XV	S-MART	transcript	1069621	1070241	.	-	.	seqedit=false;p_id=P4484;gene_id=YOR387C;tss_id=TSS2761;nbOverlaps=0;ID=YOR387C;Name=YOR387C
XV	S-MART	transcript	1078545	1079258	.	-	.	seqedit=false;p_id=P4824;gene_id=YOR391C;tss_id=TSS4197;nbOverlaps=0;ID=YOR391C;Name=HSP33
XV	S-MART	transcript	1074213	1076087	.	+	.	seqedit=false;p_id=P878;gene_id=YOR389W;tss_id=TSS5615;nbOverlaps=0;ID=YOR389W;Name=YOR389W
I	S-MART	transcript	73426	73518	.	-	.	seqedit=false;p_id=P3119;gene_id=YAL037C-A;tss_id=TSS6344;nbOverlaps=0;ID=YAL037C-A;Name=YAL037C-A
XVI	S-MART	transcript	216012	218363	.	-	.	seqedit=false;p_id=P3562;gene_id=YPL176C;tss_id=TSS1213;nbOverlaps=0;ID=YPL176C;Name=TRE1
XV	S-MART	transcript	1076784	1077911	.	+	.	seqedit=false;p_id=P4713;gene_id=YOR390W;tss_id=TSS825;nbOverlaps=0;ID=YOR390W;Name=YOR390W
XV	S-MART	transcript	1080276	1081589	.	+	.	seqedit=false;p_id=P4924;gene_id=YOR393W;tss_id=TSS3177;nbOverlaps=0;ID=YOR393W;Name=ERR1
XV	S-MART	transcript	1079282	1079725	.	+	.	seqedit=false;p_id=P534;gene_id=YOR392W;tss_id=TSS5759;nbOverlaps=0;ID=YOR392W;Name=YOR392W
XV	S-MART	transcript	1084202	1084369	.	-	.	seqedit=false;p_id=P2161;gene_id=YOR394C-A;tss_id=TSS4664;nbOverlaps=0;ID=YOR394C-A;Name=YOR394C-A
VIII	S-MART	transcript	115620	115901	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:12536:6527#0--HWUSI-EAS1656_0009_FC:3:85:2961:20978#0--HWUSI-EAS1656_000;p_id=P3247;gene_id=YHR005C-A;tss_id=TSS1768;nbOverlaps=200;ID=YHR005C-A;Name=TIM10
XV	S-MART	transcript	1082718	1083212	.	+	.	seqedit=false;p_id=P1333;gene_id=YOR394W;tss_id=TSS713;nbOverlaps=0;ID=YOR394W;Name=PAU21
XVI	S-MART	transcript	213042	213962	.	-	.	seqedit=false;p_id=P3669;gene_id=YPL177C;tss_id=TSS6044;nbOverlaps=0;ID=YPL177C;Name=CUP9
XV	S-MART	transcript	1090015	1090497	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_FC:3:12:4982:1665#0--HWUSI-EAS1656_0009_F;p_id=P688;gene_id=YOR396C-A;tss_id=TSS2788;nbOverlaps=70;ID=YOR396C-A;Name=YOR396C-A
XV	S-MART	transcript	1085473	1090863	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P2350;gene_id=YOR396W;tss_id=TSS2628;nbOverlaps=531;ID=YOR396W;Name=YRF1-8
VIII	S-MART	transcript	420373	422286	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:115:2589:1467#0--HWUSI-EAS1656_0009_FC:3:120:12925:6013#0--HWUSI-EAS1656_000;p_id=P6259;gene_id=YHR161C;tss_id=TSS6017;nbOverlaps=309;ID=YHR161C;Name=YAP1801
VIII	S-MART	transcript	423072	423461	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:61:2674:7203#0--HWUSI-EAS1656_0009_FC:3:21:8384:1575#0--HWUSI-EAS1656_0009_F;p_id=P3020;gene_id=YHR162W;tss_id=TSS6007;nbOverlaps=1272;ID=YHR162W;Name=YHR162W
VIII	S-MART	transcript	424610	429178	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:11977:14177#0--HWUSI-EAS1656_0009_FC:3:112:11807:2307#0--HWUSI-EAS1656_00;p_id=P3513;gene_id=YHR164C;tss_id=TSS5986;nbOverlaps=112;ID=YHR164C;Name=DNA2
VIII	S-MART	transcript	429707	436948	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:20:17328:15374#0--HWUSI-EAS1656_0009_FC:3:40:10680:6157#0--HWUSI-EAS1656_000;p_id=P6400;gene_id=YHR165C;tss_id=TSS6283;nbOverlaps=1204;ID=YHR165C;Name=PRP8
VIII	S-MART	transcript	436647	436958	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:1141:10293#0--HWUSI-EAS1656_0009_FC:3:37:7109:18464#0--HWUSI-EAS1656_000;p_id=P3775;gene_id=YHR165W-A;tss_id=TSS189;nbOverlaps=8;ID=YHR165W-A;Name=YHR165W-A
XVI	S-MART	transcript	554605	555729	.	+	.	seqedit=false;p_id=P298;gene_id=YPL001W;tss_id=TSS4673;nbOverlaps=0;ID=YPL001W;Name=HAT1
VIII	S-MART	transcript	437170	439050	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:5749:12333#0--HWUSI-EAS1656_0009_FC:3:117:2036:3060#0--HWUSI-EAS1656_0009;p_id=P5693;gene_id=YHR166C;tss_id=TSS2515;nbOverlaps=86;ID=YHR166C;Name=CDC23
VIII	S-MART	transcript	439342	440127	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:66:8935:18974#0--HWUSI-EAS1656_0009_FC:3:89:11696:5440#0--HWUSI-EAS1656_0009;p_id=P710;gene_id=YHR167W;tss_id=TSS6024;nbOverlaps=118;ID=YHR167W;Name=THP2
VIII	S-MART	transcript	440377	441933	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:16849:12502#0--HWUSI-EAS1656_0009_FC:3:66:12034:13308#0--HWUSI-EAS1656_000;p_id=P4974;gene_id=YHR168W;tss_id=TSS5694;nbOverlaps=44;ID=YHR168W;Name=MTG2
I	S-MART	transcript	54989	56857	.	-	.	seqedit=false;p_id=P1916;gene_id=YAL047C;tss_id=TSS3062;nbOverlaps=0;ID=YAL047C;Name=SPC72
IV	S-MART	transcript	588827	589402	.	-	.	seqedit=false;p_id=P6082;gene_id=YDR071C;tss_id=TSS6008;nbOverlaps=0;ID=YDR071C;Name=PAA1
IV	S-MART	transcript	589761	591344	.	-	.	seqedit=false;p_id=P3957;gene_id=YDR072C;tss_id=TSS5152;nbOverlaps=0;ID=YDR072C;Name=IPT1
VIII	S-MART	transcript	445713	447605	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:1:5760:6202#0--HWUSI-EAS1656_0009_FC:3:97:15004:1172#0--HWUSI-EAS1656_0009_F;p_id=P1061;gene_id=YHR171W;tss_id=TSS6272;nbOverlaps=73;ID=YHR171W;Name=ATG7
XVI	S-MART	transcript	553627	554328	.	-	.	seqedit=false;p_id=P260;gene_id=YPL002C;tss_id=TSS6211;nbOverlaps=0;ID=YPL002C;Name=SNF8
VIII	S-MART	transcript	448335	450806	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:28:18077:5940#0--HWUSI-EAS1656_0009_FC:3:100:3285:17869#0--HWUSI-EAS1656_000;p_id=P5199;gene_id=YHR172W;tss_id=TSS6449;nbOverlaps=107;ID=YHR172W;Name=SPC97
VIII	S-MART	transcript	451327	452640	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:9117:11970#0--HWUSI-EAS1656_0009_FC:3:8:2586:18011#0--HWUSI-EAS1656_0009_;p_id=P2728;gene_id=YHR174W;tss_id=TSS3986;nbOverlaps=62230;ID=YHR174W;Name=ENO2
VIII	S-MART	transcript	450815	451153	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:15925:15972#0--HWUSI-EAS1656_0009_FC:3:64:9192:1473#0--HWUSI-EAS1656_0009;p_id=P6344;gene_id=YHR173C;tss_id=TSS5547;nbOverlaps=6;ID=YHR173C;Name=YHR173C
VIII	S-MART	transcript	452872	453441	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:18928:13528#0--HWUSI-EAS1656_0009_FC:3:110:17107:7413#0--HWUSI-EAS1656_000;p_id=P4027;gene_id=YHR175W;tss_id=TSS5708;nbOverlaps=240;ID=YHR175W;Name=CTR2
VIII	S-MART	transcript	453558	453707	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:3454:19125#0--HWUSI-EAS1656_0009_FC:3:95:13541:16781#0--HWUSI-EAS1656_00;p_id=P6588;gene_id=YHR175W-A;tss_id=TSS6325;nbOverlaps=25;ID=YHR175W-A;Name=YHR175W-A
VIII	S-MART	transcript	454229	455527	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:1:12677:15915#0--HWUSI-EAS1656_0009_FC:3:67:7770:3100#0--HWUSI-EAS1656_0009_;p_id=P1603;gene_id=YHR176W;tss_id=TSS5002;nbOverlaps=38;ID=YHR176W;Name=FMO1
XVI	S-MART	transcript	552020	553408	.	+	.	seqedit=false;p_id=P5891;gene_id=YPL003W;tss_id=TSS4108;nbOverlaps=0;ID=YPL003W;Name=ULA1
VIII	S-MART	transcript	459299	461530	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:13345:20995#0--HWUSI-EAS1656_0009_FC:3:103:15896:18548#0--HWUSI-EAS1656_0;p_id=P3271;gene_id=YHR178W;tss_id=TSS3544;nbOverlaps=162;ID=YHR178W;Name=STB5
VIII	S-MART	transcript	456591	457952	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:12233:14604#0--HWUSI-EAS1656_0009_FC:3:4:13459:17868#0--HWUSI-EAS1656_00;p_id=P163;gene_id=YHR177W;tss_id=TSS4452;nbOverlaps=28;ID=YHR177W;Name=YHR177W
VIII	S-MART	transcript	462502	463704	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:8258:11382#0--HWUSI-EAS1656_0009_FC:3:61:7430:19623#0--HWUSI-EAS1656_0009;p_id=P2761;gene_id=YHR179W;tss_id=TSS4062;nbOverlaps=1851;ID=YHR179W;Name=OYE2
VIII	S-MART	transcript	466958	467062	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:7897:9853#0--HWUSI-EAS1656_0009_FC:3:18:18923:7183#0--HWUSI-EAS1656_0009_;p_id=P2392;gene_id=YHR180C-B;tss_id=TSS531;nbOverlaps=22;ID=YHR180C-B;Name=YHR180C-B
VIII	S-MART	transcript	466932	467114	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:7897:9853#0--HWUSI-EAS1656_0009_FC:3:18:18923:7183#0--HWUSI-EAS1656_0009_;p_id=P2471;gene_id=YHR180W-A;tss_id=TSS5096;nbOverlaps=22;ID=YHR180W-A;Name=YHR180W-A
XVI	S-MART	transcript	212158	212784	.	+	.	seqedit=false;p_id=P4080;gene_id=YPL178W;tss_id=TSS2994;nbOverlaps=0;ID=YPL178W;Name=CBC2
VIII	S-MART	transcript	465178	465669	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:6457:5319#0--HWUSI-EAS1656_0009_FC:3:11:1412:6174#0--HWUSI-EAS1656_0009_FC;p_id=P1727;gene_id=YHR180W;tss_id=TSS292;nbOverlaps=14;ID=YHR180W;Name=YHR180W
XVI	S-MART	transcript	550632	551657	.	-	.	seqedit=false;p_id=P4870;gene_id=YPL004C;tss_id=TSS6033;nbOverlaps=0;ID=YPL004C;Name=LSP1
VIII	S-MART	transcript	467228	467914	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:63:2005:7192#0--HWUSI-EAS1656_0009_FC:3:74:12729:8409#0--HWUSI-EAS1656_0009_;p_id=P3442;gene_id=YHR181W;tss_id=TSS6025;nbOverlaps=164;ID=YHR181W;Name=SVP26
IV	S-MART	transcript	616928	617170	.	-	.	seqedit=false;p_id=P2018;gene_id=YDR086C;tss_id=TSS5728;nbOverlaps=0;ID=YDR086C;Name=SSS1
IV	S-MART	transcript	617470	618306	.	-	.	seqedit=false;p_id=P4102;gene_id=YDR087C;tss_id=TSS6287;nbOverlaps=0;ID=YDR087C;Name=RRP1
VIII	S-MART	transcript	468219	470576	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:7898:18442#0--HWUSI-EAS1656_0009_FC:3:99:17090:4827#0--HWUSI-EAS1656_0009;p_id=P5660;gene_id=YHR182W;tss_id=TSS435;nbOverlaps=28;ID=YHR182W;Name=YHR182W
IV	S-MART	transcript	626708	628534	.	-	.	seqedit=false;p_id=P3221;gene_id=YDR091C;tss_id=TSS1621;nbOverlaps=0;ID=YDR091C;Name=RLI1
VIII	S-MART	transcript	474627	475340	.	-	.	seqedit=false;p_id=P2683;gene_id=YHR185C;tss_id=TSS832;nbOverlaps=0;ID=YHR185C;Name=PFS1
VIII	S-MART	transcript	475999	480672	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:17324:3799#0--HWUSI-EAS1656_0009_FC:3:2:11237:12349#0--HWUSI-EAS1656_0009;p_id=P130;gene_id=YHR186C;tss_id=TSS3050;nbOverlaps=250;ID=YHR186C;Name=KOG1
VIII	S-MART	transcript	480990	481919	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:36:17398:14482#0--HWUSI-EAS1656_0009_FC:3:2:5311:5600#0--HWUSI-EAS1656_0009_;p_id=P1014;gene_id=YHR187W;tss_id=TSS918;nbOverlaps=159;ID=YHR187W;Name=IKI1
VIII	S-MART	transcript	482005	483837	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:14695:3585#0--HWUSI-EAS1656_0009_FC:3:112:2251:6066#0--HWUSI-EAS1656_0009;p_id=P4426;gene_id=YHR188C;tss_id=TSS5790;nbOverlaps=334;ID=YHR188C;Name=GPI16
VIII	S-MART	transcript	484028	484600	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:18135:17406#0--HWUSI-EAS1656_0009_FC:3:104:9640:1976#0--HWUSI-EAS1656_00;p_id=P5544;gene_id=YHR189W;tss_id=TSS4087;nbOverlaps=23;ID=YHR189W;Name=PTH1
IV	S-MART	transcript	631282	636120	.	+	.	seqedit=false;p_id=P6535;gene_id=YDR093W;tss_id=TSS3449;nbOverlaps=0;ID=YDR093W;Name=DNF2
IV	S-MART	transcript	637139	639823	.	+	.	seqedit=false;p_id=P1895;gene_id=YDR096W;tss_id=TSS1976;nbOverlaps=0;ID=YDR096W;Name=GIS1
IV	S-MART	transcript	635840	636175	.	+	.	seqedit=false;p_id=P5374;gene_id=YDR094W;tss_id=TSS1733;nbOverlaps=0;ID=YDR094W;Name=YDR094W
IV	S-MART	transcript	636117	636527	.	-	.	seqedit=false;p_id=P565;gene_id=YDR095C;tss_id=TSS3174;nbOverlaps=0;ID=YDR095C;Name=YDR095C
IV	S-MART	transcript	640109	643837	.	-	.	seqedit=false;p_id=P3820;gene_id=YDR097C;tss_id=TSS5680;nbOverlaps=0;ID=YDR097C;Name=MSH6
IV	S-MART	transcript	644178	645035	.	-	.	seqedit=false;p_id=P4658;gene_id=YDR098C;tss_id=TSS3960;nbOverlaps=0;ID=YDR098C;Name=GRX3
VIII	S-MART	transcript	490747	491712	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:16444:8259#0--HWUSI-EAS1656_0009_FC:3:30:9697:7189#0--HWUSI-EAS1656_0009_;p_id=P2959;gene_id=YHR195W;tss_id=TSS2749;nbOverlaps=140;ID=YHR195W;Name=NVJ1
VIII	S-MART	transcript	491931	493658	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:3177:3628#0--HWUSI-EAS1656_0009_FC:3:110:9761:6182#0--HWUSI-EAS1656_0009_;p_id=P113;gene_id=YHR196W;tss_id=TSS6831;nbOverlaps=725;ID=YHR196W;Name=UTP9
XVI	S-MART	transcript	542082	543848	.	-	.	seqedit=false;p_id=P2132;gene_id=YPL007C;tss_id=TSS4126;nbOverlaps=0;ID=YPL007C;Name=TFC8
VIII	S-MART	transcript	493896	496187	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:14059:8388#0--HWUSI-EAS1656_0009_FC:3:13:10444:6211#0--HWUSI-EAS1656_000;p_id=P1681;gene_id=YHR197W;tss_id=TSS2175;nbOverlaps=702;ID=YHR197W;Name=RIX1
VIII	S-MART	transcript	496315	497280	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:5866:19180#0--HWUSI-EAS1656_0009_FC:3:56:1590:14311#0--HWUSI-EAS1656_0009;p_id=P3661;gene_id=YHR198C;tss_id=TSS4219;nbOverlaps=93;ID=YHR198C;Name=AIM18
VIII	S-MART	transcript	497490	498422	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:11774:2868#0--HWUSI-EAS1656_0009_FC:3:6:17296:19169#0--HWUSI-EAS1656_0009;p_id=P4541;gene_id=YHR199C;tss_id=TSS2411;nbOverlaps=125;ID=YHR199C;Name=AIM46
VIII	S-MART	transcript	498571	498859	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:7863:9255#0--HWUSI-EAS1656_0009_FC:3:112:10958:5283#0--HWUSI-EAS1656_0009;p_id=P6492;gene_id=YHR199C-A;tss_id=TSS3032;nbOverlaps=19;ID=YHR199C-A;Name=NBL1
VIII	S-MART	exon	498571	498719	.	-	.	ID=YHR199C-A-exon1;Name=NBL1-exon1;Parent=YHR199C-A
VIII	S-MART	exon	498787	498859	.	-	.	ID=YHR199C-A-exon2;Name=NBL1-exon2;Parent=YHR199C-A
XII	S-MART	transcript	590562	592043	.	-	.	seqedit=false;p_id=P4483;gene_id=YLR227C;tss_id=TSS2521;nbOverlaps=0;ID=YLR227C;Name=ADY4
IV	S-MART	transcript	655686	657467	.	-	.	seqedit=false;p_id=P3832;gene_id=YDR101C;tss_id=TSS6075;nbOverlaps=0;ID=YDR101C;Name=ARX1
IV	S-MART	transcript	658350	661103	.	+	.	seqedit=false;p_id=P3324;gene_id=YDR103W;tss_id=TSS2804;nbOverlaps=0;ID=YDR103W;Name=STE5
XVI	S-MART	transcript	539385	541970	.	+	.	seqedit=false;p_id=P444;gene_id=YPL008W;tss_id=TSS4985;nbOverlaps=0;ID=YPL008W;Name=CHL1
VIII	S-MART	transcript	499079	499885	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:12199:6586#0--HWUSI-EAS1656_0009_FC:3:6:13467:17366#0--HWUSI-EAS1656_0009;p_id=P5843;gene_id=YHR200W;tss_id=TSS2284;nbOverlaps=638;ID=YHR200W;Name=RPN10
VIII	S-MART	transcript	499950	501143	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:71:15244:1491#0--HWUSI-EAS1656_0009_FC:3:94:1863:6832#0--HWUSI-EAS1656_0009_;p_id=P1459;gene_id=YHR201C;tss_id=TSS3235;nbOverlaps=382;ID=YHR201C;Name=PPX1
VIII	S-MART	transcript	504476	505530	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:94:12562:2640#0--HWUSI-EAS1656_0009_FC:3:3:3357:5782#0--HWUSI-EAS1656_0009_F;p_id=P2288;gene_id=YHR203C;tss_id=TSS4409;nbOverlaps=8402;ID=YHR203C;Name=RPS4B
VIII	S-MART	exon	504476	505247	.	-	.	ID=YHR203C-exon1;Name=RPS4B-exon1;Parent=YHR203C
VIII	S-MART	exon	505517	505530	.	-	.	ID=YHR203C-exon2;Name=RPS4B-exon2;Parent=YHR203C
VIII	S-MART	transcript	502388	504196	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:2472:7671#0--HWUSI-EAS1656_0009_FC:3:71:9893:19763#0--HWUSI-EAS1656_0009_;p_id=P3229;gene_id=YHR202W;tss_id=TSS6374;nbOverlaps=50;ID=YHR202W;Name=YHR202W
IV	S-MART	transcript	669016	671034	.	-	.	seqedit=false;p_id=P5295;gene_id=YDR107C;tss_id=TSS1579;nbOverlaps=0;ID=YDR107C;Name=TMN2
XVI	S-MART	transcript	208157	209806	.	+	.	seqedit=false;p_id=P6316;gene_id=YPL179W;tss_id=TSS4705;nbOverlaps=0;ID=YPL179W;Name=PPQ1
IV	S-MART	transcript	671269	673365	.	+	.	seqedit=false;p_id=P2449;gene_id=YDR108W;tss_id=TSS4896;nbOverlaps=0;ID=YDR108W;Name=TRS85
XVI	S-MART	transcript	535820	538936	.	-	.	seqedit=false;p_id=P6616;gene_id=YPL009C;tss_id=TSS6595;nbOverlaps=0;ID=YPL009C;Name=TAE2
VIII	S-MART	transcript	506319	508709	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:2355:3305#0--HWUSI-EAS1656_0009_FC:3:25:11826:2969#0--HWUSI-EAS1656_0009_;p_id=P1604;gene_id=YHR204W;tss_id=TSS5720;nbOverlaps=313;ID=YHR204W;Name=MNL1
VIII	S-MART	transcript	509363	511837	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:6591:2742#0--HWUSI-EAS1656_0009_FC:3:39:8178:16104#0--HWUSI-EAS1656_0009_;p_id=P2107;gene_id=YHR205W;tss_id=TSS1438;nbOverlaps=227;ID=YHR205W;Name=SCH9
VIII	S-MART	transcript	512732	514600	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:14877:15464#0--HWUSI-EAS1656_0009_FC:3:26:5152:16972#0--HWUSI-EAS1656_000;p_id=P6449;gene_id=YHR206W;tss_id=TSS3551;nbOverlaps=166;ID=YHR206W;Name=SKN7
VIII	S-MART	transcript	514905	516485	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:10716:8309#0--HWUSI-EAS1656_0009_FC:3:25:2228:1965#0--HWUSI-EAS1656_0009_F;p_id=P5564;gene_id=YHR207C;tss_id=TSS3135;nbOverlaps=153;ID=YHR207C;Name=SET5
IV	S-MART	transcript	680496	681617	.	-	.	seqedit=false;p_id=P5924;gene_id=YDR113C;tss_id=TSS3833;nbOverlaps=0;ID=YDR113C;Name=PDS1
VIII	S-MART	transcript	519437	520312	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:5830:4339#0--HWUSI-EAS1656_0009_FC:3:10:11475:11845#0--HWUSI-EAS1656_0009;p_id=P3290;gene_id=YHR209W;tss_id=TSS3755;nbOverlaps=47;ID=YHR209W;Name=CRG1
XVI	S-MART	transcript	535018	535587	.	+	.	seqedit=false;p_id=P2035;gene_id=YPL010W;tss_id=TSS11;nbOverlaps=0;ID=YPL010W;Name=RET3
VIII	S-MART	transcript	525392	528619	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:17086:20465#0--HWUSI-EAS1656_0009_FC:3:48:6143:12452#0--HWUSI-EAS1656_00;p_id=P5383;gene_id=YHR211W;tss_id=TSS3178;nbOverlaps=104;ID=YHR211W;Name=FLO5
VIII	S-MART	transcript	520712	521737	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:12388:6525#0--HWUSI-EAS1656_0009_FC:3:120:4588:18511#0--HWUSI-EAS1656_000;p_id=P3631;gene_id=YHR210C;tss_id=TSS4630;nbOverlaps=19;ID=YHR210C;Name=YHR210C
X	S-MART	transcript	453683	454681	.	-	.	seqedit=false;p_id=P3961;gene_id=YJR009C;tss_id=TSS6480;nbOverlaps=0;ID=YJR009C;Name=TDH2
VIII	S-MART	transcript	537759	538094	.	-	.	seqedit=false;p_id=P6572;gene_id=YHR212C;tss_id=TSS3817;nbOverlaps=0;ID=YHR212C;Name=YHR212C
V	S-MART	transcript	374394	374714	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:3526:9569#0--HWUSI-EAS1656_0009_FC:3:36:12208:13564#0--HWUSI-EAS1656_0009;p_id=P2002;gene_id=YER107W-A;tss_id=TSS5743;nbOverlaps=78;ID=YER107W-A;Name=YER107W-A
XVI	S-MART	transcript	205248	207647	.	+	.	seqedit=false;p_id=P482;gene_id=YPL180W;tss_id=TSS1492;nbOverlaps=0;ID=YPL180W;Name=TCO89
V	S-MART	transcript	382595	385876	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:6529:2138#0--HWUSI-EAS1656_0009_FC:3:115:16967:14467#0--HWUSI-EAS1656_00;p_id=P6334;gene_id=YER111C;tss_id=TSS944;nbOverlaps=178;ID=YER111C;Name=SWI4
V	S-MART	transcript	387232	387795	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:11545:4848#0--HWUSI-EAS1656_0009_FC:3:48:19661:3728#0--HWUSI-EAS1656_0009;p_id=P1904;gene_id=YER112W;tss_id=TSS3561;nbOverlaps=146;ID=YER112W;Name=LSM4
XV	S-MART	transcript	589942	592587	.	-	.	seqedit=false;p_id=P4662;gene_id=YOR141C;tss_id=TSS5646;nbOverlaps=0;ID=YOR141C;Name=ARP8
V	S-MART	transcript	387932	390052	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:19514:9006#0--HWUSI-EAS1656_0009_FC:3:1:18295:9030#0--HWUSI-EAS1656_0009_;p_id=P473;gene_id=YER113C;tss_id=TSS1744;nbOverlaps=183;ID=YER113C;Name=TMN3
V	S-MART	transcript	390590	393712	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:15625:12343#0--HWUSI-EAS1656_0009_FC:3:110:12252:7574#0--HWUSI-EAS1656_00;p_id=P1291;gene_id=YER114C;tss_id=TSS4276;nbOverlaps=235;ID=YER114C;Name=BOI2
XVI	S-MART	transcript	203421	204941	.	+	.	seqedit=false;p_id=P4682;gene_id=YPL181W;tss_id=TSS7013;nbOverlaps=0;ID=YPL181W;Name=CTI6
V	S-MART	transcript	394292	394867	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:8532:19044#0--HWUSI-EAS1656_0009_FC:3:7:6711:7863#0--HWUSI-EAS1656_0009_F;p_id=P4819;gene_id=YER115C;tss_id=TSS2942;nbOverlaps=112;ID=YER115C;Name=SPR6
XI	S-MART	transcript	94499	96265	.	+	.	seqedit=false;p_id=P6024;gene_id=YKL185W;tss_id=TSS1649;nbOverlaps=0;ID=YKL185W;Name=ASH1
V	S-MART	transcript	396769	397653	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:11647:13834#0--HWUSI-EAS1656_0009_FC:3:48:17058:17328#0--HWUSI-EAS1656_00;p_id=P194;gene_id=YER117W;tss_id=TSS6043;nbOverlaps=4557;ID=YER117W;Name=RPL23B
V	S-MART	exon	396769	396810	.	+	.	ID=YER117W-exon1;Name=RPL23B-exon1;Parent=YER117W
V	S-MART	exon	397282	397653	.	+	.	ID=YER117W-exon2;Name=RPL23B-exon2;Parent=YER117W
XIV	S-MART	transcript	466334	466642	.	+	.	seqedit=false;p_id=P4525;gene_id=YNL086W;tss_id=TSS1020;nbOverlaps=0;ID=YNL086W;Name=SNN1
XI	S-MART	transcript	573574	574632	.	+	.	seqedit=false;p_id=P2784;gene_id=YKR070W;tss_id=TSS557;nbOverlaps=0;ID=YKR070W;Name=YKR070W
XI	S-MART	transcript	576435	578123	.	-	.	seqedit=false;p_id=P4383;gene_id=YKR072C;tss_id=TSS2326;nbOverlaps=0;ID=YKR072C;Name=SIS2
XI	S-MART	transcript	579209	579676	.	+	.	seqedit=false;p_id=P1296;gene_id=YKR074W;tss_id=TSS488;nbOverlaps=0;ID=YKR074W;Name=AIM29
XI	S-MART	transcript	578187	578507	.	-	.	seqedit=false;p_id=P6018;gene_id=YKR073C;tss_id=TSS6935;nbOverlaps=0;ID=YKR073C;Name=YKR073C
XI	S-MART	transcript	580212	580481	.	+	.	seqedit=false;p_id=P2830;gene_id=YKR075W-A;tss_id=TSS4252;nbOverlaps=0;ID=YKR075W-A;Name=YKR075W-A
XI	S-MART	transcript	579827	580750	.	-	.	seqedit=false;p_id=P2009;gene_id=YKR075C;tss_id=TSS29;nbOverlaps=0;ID=YKR075C;Name=YKR075C
XI	S-MART	transcript	582283	583395	.	+	.	seqedit=false;p_id=P5080;gene_id=YKR076W;tss_id=TSS1696;nbOverlaps=0;ID=YKR076W;Name=ECM4
XI	S-MART	transcript	583653	584744	.	+	.	seqedit=false;p_id=P3716;gene_id=YKR077W;tss_id=TSS2890;nbOverlaps=0;ID=YKR077W;Name=MSA2
II	S-MART	transcript	306269	306955	.	-	.	seqedit=false;p_id=P6203;gene_id=YBR035C;tss_id=TSS6780;nbOverlaps=0;ID=YBR035C;Name=PDX3
XI	S-MART	transcript	586789	589305	.	-	.	seqedit=false;p_id=P834;gene_id=YKR079C;tss_id=TSS383;nbOverlaps=0;ID=YKR079C;Name=TRZ1
XI	S-MART	transcript	584952	586709	.	+	.	seqedit=false;p_id=P423;gene_id=YKR078W;tss_id=TSS3033;nbOverlaps=0;ID=YKR078W;Name=YKR078W
XI	S-MART	transcript	590395	591357	.	+	.	seqedit=false;p_id=P2716;gene_id=YKR080W;tss_id=TSS2850;nbOverlaps=0;ID=YKR080W;Name=MTD1
XI	S-MART	transcript	591506	592540	.	-	.	seqedit=false;p_id=P5427;gene_id=YKR081C;tss_id=TSS1932;nbOverlaps=0;ID=YKR081C;Name=RPF2
XI	S-MART	transcript	592825	596298	.	+	.	seqedit=false;p_id=P2868;gene_id=YKR082W;tss_id=TSS5014;nbOverlaps=0;ID=YKR082W;Name=NUP133
XI	S-MART	transcript	596421	596822	.	-	.	seqedit=false;p_id=P3208;gene_id=YKR083C;tss_id=TSS2377;nbOverlaps=0;ID=YKR083C;Name=DAD2
XI	S-MART	transcript	597055	598890	.	-	.	seqedit=false;p_id=P6306;gene_id=YKR084C;tss_id=TSS223;nbOverlaps=0;ID=YKR084C;Name=HBS1
V	S-MART	transcript	397952	399055	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:115:2625:13129#0--HWUSI-EAS1656_0009_FC:3:24:8196:16438#0--HWUSI-EAS1656_000;p_id=P5209;gene_id=YER118C;tss_id=TSS5143;nbOverlaps=62;ID=YER118C;Name=SHO1
XI	S-MART	transcript	599094	599681	.	-	.	seqedit=false;p_id=P4371;gene_id=YKR085C;tss_id=TSS1073;nbOverlaps=0;ID=YKR085C;Name=MRPL20
XI	S-MART	transcript	599857	603072	.	+	.	seqedit=false;p_id=P6097;gene_id=YKR086W;tss_id=TSS3354;nbOverlaps=0;ID=YKR086W;Name=PRP16
XI	S-MART	transcript	603195	604232	.	-	.	seqedit=false;p_id=P2360;gene_id=YKR087C;tss_id=TSS2398;nbOverlaps=0;ID=YKR087C;Name=OMA1
XI	S-MART	transcript	604405	605418	.	-	.	seqedit=false;p_id=P5059;gene_id=YKR088C;tss_id=TSS6588;nbOverlaps=0;ID=YKR088C;Name=TVP38
XI	S-MART	transcript	605633	608365	.	-	.	seqedit=false;p_id=P294;gene_id=YKR089C;tss_id=TSS3679;nbOverlaps=0;ID=YKR089C;Name=TGL4
XI	S-MART	transcript	608946	611066	.	+	.	seqedit=false;p_id=P698;gene_id=YKR090W;tss_id=TSS3247;nbOverlaps=0;ID=YKR090W;Name=PXL1
V	S-MART	transcript	399496	400842	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:8287:13349#0--HWUSI-EAS1656_0009_FC:3:53:1141:20931#0--HWUSI-EAS1656_0009;p_id=P5540;gene_id=YER119C;tss_id=TSS2167;nbOverlaps=197;ID=YER119C;Name=AVT6
XI	S-MART	transcript	611525	612265	.	+	.	seqedit=false;p_id=P3943;gene_id=YKR091W;tss_id=TSS183;nbOverlaps=0;ID=YKR091W;Name=SRL3
XI	S-MART	transcript	612665	613885	.	-	.	seqedit=false;p_id=P913;gene_id=YKR092C;tss_id=TSS6274;nbOverlaps=0;ID=YKR092C;Name=SRP40
XI	S-MART	transcript	615730	617535	.	+	.	seqedit=false;p_id=P1454;gene_id=YKR093W;tss_id=TSS3777;nbOverlaps=0;ID=YKR093W;Name=PTR2
XI	S-MART	transcript	617996	618750	.	-	.	seqedit=false;p_id=P3302;gene_id=YKR094C;tss_id=TSS4352;nbOverlaps=0;ID=YKR094C;Name=RPL40B
XI	S-MART	exon	617996	618374	.	-	.	ID=YKR094C-exon1;Name=RPL40B-exon1;Parent=YKR094C
XI	S-MART	exon	618743	618750	.	-	.	ID=YKR094C-exon2;Name=RPL40B-exon2;Parent=YKR094C
XIII	S-MART	transcript	664752	665522	.	+	.	seqedit=false;p_id=P613;gene_id=YMR200W;tss_id=TSS443;nbOverlaps=0;ID=YMR200W;Name=ROT1
XI	S-MART	transcript	619805	625432	.	+	.	seqedit=false;p_id=P5786;gene_id=YKR095W;tss_id=TSS969;nbOverlaps=0;ID=YKR095W;Name=MLP1
XI	S-MART	transcript	625864	626205	.	+	.	seqedit=false;p_id=P747;gene_id=YKR095W-A;tss_id=TSS4438;nbOverlaps=0;ID=YKR095W-A;Name=PCC1
XI	S-MART	exon	625864	625901	.	+	.	ID=YKR095W-A-exon1;Name=PCC1-exon1;Parent=YKR095W-A
XI	S-MART	exon	625977	626205	.	+	.	ID=YKR095W-A-exon2;Name=PCC1-exon2;Parent=YKR095W-A
XI	S-MART	transcript	631152	632801	.	+	.	seqedit=false;p_id=P1502;gene_id=YKR097W;tss_id=TSS4817;nbOverlaps=0;ID=YKR097W;Name=PCK1
XI	S-MART	transcript	626793	630380	.	+	.	seqedit=false;p_id=P5884;gene_id=YKR096W;tss_id=TSS5078;nbOverlaps=0;ID=YKR096W;Name=YKR096W
XI	S-MART	transcript	633026	635179	.	-	.	seqedit=false;p_id=P4291;gene_id=YKR098C;tss_id=TSS1185;nbOverlaps=0;ID=YKR098C;Name=UBP11
XI	S-MART	transcript	635851	638286	.	+	.	seqedit=false;p_id=P25;gene_id=YKR099W;tss_id=TSS6350;nbOverlaps=0;ID=YKR099W;Name=BAS1
XI	S-MART	transcript	638901	639968	.	-	.	seqedit=false;p_id=P6453;gene_id=YKR100C;tss_id=TSS577;nbOverlaps=0;ID=YKR100C;Name=SKG1
XI	S-MART	transcript	640540	642504	.	+	.	seqedit=false;p_id=P3884;gene_id=YKR101W;tss_id=TSS3319;nbOverlaps=0;ID=YKR101W;Name=SIR1
XI	S-MART	transcript	646356	649865	.	+	.	seqedit=false;p_id=P5156;gene_id=YKR102W;tss_id=TSS4451;nbOverlaps=0;ID=YKR102W;Name=FLO10
XI	S-MART	transcript	653080	656736	.	+	.	seqedit=false;p_id=P2526;gene_id=YKR103W;tss_id=TSS79;nbOverlaps=0;ID=YKR103W;Name=NFT1
V	S-MART	transcript	402871	404352	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:56:11941:13601#0--HWUSI-EAS1656_0009_FC:3:58:14113:16990#0--HWUSI-EAS1656_00;p_id=P3516;gene_id=YER122C;tss_id=TSS303;nbOverlaps=767;ID=YER122C;Name=GLO3
XI	S-MART	transcript	658716	660464	.	-	.	seqedit=false;p_id=P5925;gene_id=YKR105C;tss_id=TSS3438;nbOverlaps=0;ID=YKR105C;Name=VBA5
XI	S-MART	transcript	656836	657756	.	+	.	seqedit=false;p_id=P224;gene_id=YKR104W;tss_id=TSS6602;nbOverlaps=0;ID=YKR104W;Name=YKR104W
XI	S-MART	transcript	661442	663289	.	+	.	seqedit=false;p_id=P3317;gene_id=YKR106W;tss_id=TSS47;nbOverlaps=0;ID=YKR106W;Name=GEX2
XII	S-MART	transcript	147890	150163	.	+	.	seqedit=false;p_id=P4579;gene_id=YLL001W;tss_id=TSS6175;nbOverlaps=0;ID=YLL001W;Name=DNM1
XII	S-MART	transcript	146291	147601	.	+	.	seqedit=false;p_id=P1324;gene_id=YLL002W;tss_id=TSS1066;nbOverlaps=0;ID=YLL002W;Name=RTT109
XII	S-MART	transcript	143201	146041	.	+	.	seqedit=false;p_id=P2359;gene_id=YLL003W;tss_id=TSS2943;nbOverlaps=0;ID=YLL003W;Name=SFI1
V	S-MART	transcript	402375	402719	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:39:10620:7748#0--HWUSI-EAS1656_0009_FC:3:31:9669:20040#0--HWUSI-EAS1656_0009;p_id=P3498;gene_id=YER121W;tss_id=TSS71;nbOverlaps=9;ID=YER121W;Name=YER121W
XII	S-MART	transcript	141073	142923	.	+	.	seqedit=false;p_id=P273;gene_id=YLL004W;tss_id=TSS1475;nbOverlaps=0;ID=YLL004W;Name=ORC3
XII	S-MART	transcript	137940	140546	.	-	.	seqedit=false;p_id=P5272;gene_id=YLL005C;tss_id=TSS4015;nbOverlaps=0;ID=YLL005C;Name=SPO75
XII	S-MART	transcript	136586	137866	.	+	.	seqedit=false;p_id=P5184;gene_id=YLL006W;tss_id=TSS4786;nbOverlaps=0;ID=YLL006W;Name=MMM1
XII	S-MART	transcript	136345	136521	.	+	.	seqedit=false;p_id=P183;gene_id=YLL006W-A;tss_id=TSS4017;nbOverlaps=0;ID=YLL006W-A;Name=YLL006W-A
XII	S-MART	transcript	131729	133987	.	+	.	seqedit=false;p_id=P1948;gene_id=YLL008W;tss_id=TSS5272;nbOverlaps=0;ID=YLL008W;Name=DRS1
XII	S-MART	transcript	134302	136299	.	-	.	seqedit=false;p_id=P3219;gene_id=YLL007C;tss_id=TSS4244;nbOverlaps=0;ID=YLL007C;Name=YLL007C
V	S-MART	transcript	404813	406387	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:17087:16462#0--HWUSI-EAS1656_0009_FC:3:40:11548:4789#0--HWUSI-EAS1656_000;p_id=P2884;gene_id=YER123W;tss_id=TSS5645;nbOverlaps=181;ID=YER123W;Name=YCK3
XII	S-MART	transcript	131205	131414	.	-	.	seqedit=false;p_id=P6214;gene_id=YLL009C;tss_id=TSS6135;nbOverlaps=0;ID=YLL009C;Name=COX17
XII	S-MART	transcript	129330	130613	.	-	.	seqedit=false;p_id=P1850;gene_id=YLL010C;tss_id=TSS803;nbOverlaps=0;ID=YLL010C;Name=PSR1
XII	S-MART	transcript	127523	128992	.	+	.	seqedit=false;p_id=P1218;gene_id=YLL011W;tss_id=TSS481;nbOverlaps=0;ID=YLL011W;Name=SOF1
XII	S-MART	transcript	125534	127255	.	+	.	seqedit=false;p_id=P1884;gene_id=YLL012W;tss_id=TSS3388;nbOverlaps=0;ID=YLL012W;Name=YEH1
XII	S-MART	transcript	122075	124714	.	-	.	seqedit=false;p_id=P5133;gene_id=YLL013C;tss_id=TSS3684;nbOverlaps=0;ID=YLL013C;Name=PUF3
XII	S-MART	transcript	121322	121648	.	+	.	seqedit=false;p_id=P4851;gene_id=YLL014W;tss_id=TSS1790;nbOverlaps=0;ID=YLL014W;Name=EMC6
V	S-MART	transcript	407342	409063	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:15531:4696#0--HWUSI-EAS1656_0009_FC:3:26:3192:8498#0--HWUSI-EAS1656_0009_;p_id=P4668;gene_id=YER124C;tss_id=TSS7055;nbOverlaps=1979;ID=YER124C;Name=DSE1
XII	S-MART	transcript	116432	121111	.	+	.	seqedit=false;p_id=P3145;gene_id=YLL015W;tss_id=TSS5602;nbOverlaps=0;ID=YLL015W;Name=BPT1
XII	S-MART	transcript	112847	115993	.	+	.	seqedit=false;gene_id=YLL016W;tss_id=TSS4118;nbOverlaps=0;ID=YLL016W;Name=SDC25
XII	S-MART	transcript	109902	111575	.	-	.	seqedit=false;p_id=P2286;gene_id=YLL018C;tss_id=TSS213;nbOverlaps=0;ID=YLL018C;Name=DPS1
XII	S-MART	transcript	112234	112545	.	+	.	seqedit=false;gene_id=YLL017W;tss_id=TSS6502;nbOverlaps=0;ID=YLL017W;Name=YLL017W
XIV	S-MART	transcript	198502	199977	.	-	.	seqedit=false;p_id=P1187;gene_id=YNL240C;tss_id=TSS1944;nbOverlaps=0;ID=YNL240C;Name=NAR1
XII	S-MART	transcript	108676	108972	.	-	.	seqedit=false;p_id=P1801;gene_id=YLL018C-A;tss_id=TSS2013;nbOverlaps=0;ID=YLL018C-A;Name=COX19
XII	S-MART	transcript	105686	107899	.	-	.	seqedit=false;p_id=P5472;gene_id=YLL019C;tss_id=TSS2937;nbOverlaps=0;ID=YLL019C;Name=KNS1
V	S-MART	transcript	410189	412618	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:12:19175:12036#0--HWUSI-EAS1656_0009_FC:3:26:19804:4753#0--HWUSI-EAS1656_000;p_id=P2644;gene_id=YER125W;tss_id=TSS1142;nbOverlaps=2120;ID=YER125W;Name=RSP5
IV	S-MART	transcript	92762	93745	.	-	.	seqedit=false;p_id=P3199;gene_id=YDL205C;tss_id=TSS2022;nbOverlaps=0;ID=YDL205C;Name=HEM3
IV	S-MART	transcript	88248	89864	.	+	.	seqedit=false;p_id=P5570;gene_id=YDL207W;tss_id=TSS4725;nbOverlaps=0;ID=YDL207W;Name=GLE1
IV	S-MART	transcript	90176	92464	.	+	.	seqedit=false;p_id=P4301;gene_id=YDL206W;tss_id=TSS5076;nbOverlaps=0;ID=YDL206W;Name=YDL206W
XII	S-MART	transcript	593438	594760	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P4451;gene_id=YLR227W-A;tss_id=TSS2667;nbOverlaps=22;ID=YLR227W-A;Name=YLR227W-A
IV	S-MART	transcript	87512	87982	.	+	.	seqedit=false;p_id=P4502;gene_id=YDL208W;tss_id=TSS3840;nbOverlaps=0;ID=YDL208W;Name=NHP2
IV	S-MART	transcript	86207	87226	.	-	.	seqedit=false;p_id=P691;gene_id=YDL209C;tss_id=TSS3486;nbOverlaps=0;ID=YDL209C;Name=CWC2
V	S-MART	transcript	413394	414179	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:77:7543:14021#0--HWUSI-EAS1656_0009_FC:3:109:4406:19937#0--HWUSI-EAS1656_000;p_id=P2551;gene_id=YER126C;tss_id=TSS4003;nbOverlaps=408;ID=YER126C;Name=NSA2
IV	S-MART	transcript	84270	85985	.	+	.	seqedit=false;p_id=P3407;gene_id=YDL210W;tss_id=TSS170;nbOverlaps=0;ID=YDL210W;Name=UGA4
IV	S-MART	transcript	78426	79058	.	+	.	seqedit=false;p_id=P6264;gene_id=YDL212W;tss_id=TSS1945;nbOverlaps=0;ID=YDL212W;Name=SHR3
VII	S-MART	transcript	1027370	1031509	.	+	.	seqedit=false;p_id=P6487;gene_id=YGR270W;tss_id=TSS5595;nbOverlaps=0;ID=YGR270W;Name=YTA7
IV	S-MART	transcript	79294	80412	.	-	.	seqedit=false;p_id=P3583;gene_id=YDL211C;tss_id=TSS4872;nbOverlaps=0;ID=YDL211C;Name=YDL211C
IV	S-MART	transcript	77289	77966	.	-	.	seqedit=false;p_id=P3605;gene_id=YDL213C;tss_id=TSS2622;nbOverlaps=0;ID=YDL213C;Name=NOP6
IV	S-MART	transcript	74446	76545	.	-	.	seqedit=false;p_id=P5522;gene_id=YDL214C;tss_id=TSS2353;nbOverlaps=0;ID=YDL214C;Name=PRR2
IV	S-MART	transcript	70640	73918	.	-	.	seqedit=false;p_id=P4758;gene_id=YDL215C;tss_id=TSS2006;nbOverlaps=0;ID=YDL215C;Name=GDH2
V	S-MART	transcript	414481	415554	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:9608:1644#0--HWUSI-EAS1656_0009_FC:3:118:8811:15345#0--HWUSI-EAS1656_0009;p_id=P3350;gene_id=YER127W;tss_id=TSS426;nbOverlaps=136;ID=YER127W;Name=LCP5
IV	S-MART	transcript	68997	70319	.	-	.	seqedit=false;p_id=P2919;gene_id=YDL216C;tss_id=TSS2144;nbOverlaps=0;ID=YDL216C;Name=RRI1
IV	S-MART	transcript	67983	68606	.	-	.	seqedit=false;p_id=P355;gene_id=YDL217C;tss_id=TSS3158;nbOverlaps=0;ID=YDL217C;Name=TIM22
VII	S-MART	transcript	1037800	1038501	.	-	.	seqedit=false;p_id=P161;gene_id=YGR271C-A;tss_id=TSS2218;nbOverlaps=0;ID=YGR271C-A;Name=EFG1
IV	S-MART	transcript	65242	65765	.	+	.	seqedit=false;p_id=P1918;gene_id=YDL219W;tss_id=TSS5290;nbOverlaps=0;ID=YDL219W;Name=DTD1
IV	S-MART	exon	65242	65306	.	+	.	ID=YDL219W-exon1;Name=DTD1-exon1;Parent=YDL219W
IV	S-MART	exon	65378	65765	.	+	.	ID=YDL219W-exon2;Name=DTD1-exon2;Parent=YDL219W
IV	S-MART	transcript	66493	67446	.	+	.	seqedit=false;p_id=P2513;gene_id=YDL218W;tss_id=TSS6020;nbOverlaps=0;ID=YDL218W;Name=YDL218W
V	S-MART	transcript	415859	416470	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:5993:6935#0--HWUSI-EAS1656_0009_FC:3:117:4511:13231#0--HWUSI-EAS1656_0009;p_id=P5724;gene_id=YER128W;tss_id=TSS4043;nbOverlaps=21;ID=YER128W;Name=VFA1
IV	S-MART	transcript	62244	65018	.	-	.	seqedit=false;p_id=P4292;gene_id=YDL220C;tss_id=TSS3915;nbOverlaps=0;ID=YDL220C;Name=CDC13
IV	S-MART	transcript	60872	61801	.	-	.	seqedit=false;p_id=P696;gene_id=YDL222C;tss_id=TSS5448;nbOverlaps=0;ID=YDL222C;Name=FMP45
VII	S-MART	transcript	1031791	1037694	.	+	.	seqedit=false;p_id=P852;gene_id=YGR271W;tss_id=TSS1757;nbOverlaps=0;ID=YGR271W;Name=SLH1
IV	S-MART	transcript	62011	62562	.	+	.	seqedit=false;p_id=P4674;gene_id=YDL221W;tss_id=TSS3364;nbOverlaps=0;ID=YDL221W;Name=YDL221W
IV	S-MART	transcript	57265	60405	.	-	.	seqedit=false;p_id=P5394;gene_id=YDL223C;tss_id=TSS1149;nbOverlaps=0;ID=YDL223C;Name=HBT1
IV	S-MART	transcript	54397	56346	.	-	.	seqedit=false;p_id=P3096;gene_id=YDL224C;tss_id=TSS1110;nbOverlaps=0;ID=YDL224C;Name=WHI4
IV	S-MART	transcript	52445	54100	.	+	.	seqedit=false;p_id=P3617;gene_id=YDL225W;tss_id=TSS537;nbOverlaps=0;ID=YDL225W;Name=SHS1
V	S-MART	transcript	417281	420709	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:117:4062:10057#0--HWUSI-EAS1656_0009_FC:3:73:3210:8907#0--HWUSI-EAS1656_0009;p_id=P3965;gene_id=YER129W;tss_id=TSS1462;nbOverlaps=327;ID=YER129W;Name=SAK1
IV	S-MART	transcript	51115	52173	.	-	.	seqedit=false;p_id=P2387;gene_id=YDL226C;tss_id=TSS2100;nbOverlaps=0;ID=YDL226C;Name=GCS1
IV	S-MART	transcript	46271	48031	.	-	.	seqedit=false;p_id=P205;gene_id=YDL227C;tss_id=TSS6523;nbOverlaps=0;ID=YDL227C;Name=HO
VII	S-MART	transcript	1039895	1043095	.	-	.	seqedit=false;p_id=P3339;gene_id=YGR274C;tss_id=TSS2348;nbOverlaps=0;ID=YGR274C;Name=TAF1
IV	S-MART	transcript	44065	45906	.	+	.	seqedit=false;p_id=P155;gene_id=YDL229W;tss_id=TSS2666;nbOverlaps=0;ID=YDL229W;Name=SSB1
IV	S-MART	transcript	45277	45918	.	-	.	seqedit=false;p_id=P4335;gene_id=YDL228C;tss_id=TSS4065;nbOverlaps=0;ID=YDL228C;Name=YDL228C
IV	S-MART	transcript	42700	43707	.	+	.	seqedit=false;p_id=P73;gene_id=YDL230W;tss_id=TSS2421;nbOverlaps=0;ID=YDL230W;Name=PTP1
IV	S-MART	transcript	38867	42244	.	-	.	seqedit=false;p_id=P6108;gene_id=YDL231C;tss_id=TSS920;nbOverlaps=0;ID=YDL231C;Name=BRE4
V	S-MART	transcript	423952	424311	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:14804:21039#0--HWUSI-EAS1656_0009_FC:3:63:16969:10857#0--HWUSI-EAS1656_00;p_id=P3375;gene_id=YER131W;tss_id=TSS3984;nbOverlaps=1436;ID=YER131W;Name=RPS26B
IV	S-MART	transcript	38487	38597	.	+	.	seqedit=false;p_id=P5539;gene_id=YDL232W;tss_id=TSS291;nbOverlaps=0;ID=YDL232W;Name=OST4
XIV	S-MART	transcript	674923	675876	.	+	.	seqedit=false;p_id=P2821;gene_id=YNR027W;tss_id=TSS3485;nbOverlaps=0;ID=YNR027W;Name=BUD17
IV	S-MART	transcript	34237	36477	.	-	.	seqedit=false;p_id=P5305;gene_id=YDL234C;tss_id=TSS3995;nbOverlaps=0;ID=YDL234C;Name=GYP7
VII	S-MART	transcript	1038715	1039239	.	-	.	seqedit=false;p_id=P6079;gene_id=YGR273C;tss_id=TSS193;nbOverlaps=0;ID=YGR273C;Name=YGR273C
IV	S-MART	transcript	36797	38173	.	+	.	seqedit=false;p_id=P4807;gene_id=YDL233W;tss_id=TSS1839;nbOverlaps=0;ID=YDL233W;Name=YDL233W
IV	S-MART	transcript	33415	33918	.	-	.	seqedit=false;p_id=P3066;gene_id=YDL235C;tss_id=TSS3071;nbOverlaps=0;ID=YDL235C;Name=YPD1
IV	S-MART	transcript	32296	33234	.	+	.	seqedit=false;p_id=P5022;gene_id=YDL236W;tss_id=TSS551;nbOverlaps=0;ID=YDL236W;Name=PHO13
IV	S-MART	transcript	30657	31829	.	+	.	seqedit=false;p_id=P3560;gene_id=YDL237W;tss_id=TSS1738;nbOverlaps=0;ID=YDL237W;Name=AIM6
V	S-MART	transcript	421115	422446	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7493:19247#0--HWUSI-EAS1656_0009_FC:3:38:4537:3246#0--HWUSI-EAS1656_0009_;p_id=P2162;gene_id=YER130C;tss_id=TSS2374;nbOverlaps=115;ID=YER130C;Name=YER130C
IV	S-MART	transcript	28985	30454	.	-	.	seqedit=false;p_id=P5001;gene_id=YDL238C;tss_id=TSS662;nbOverlaps=0;ID=YDL238C;Name=GUD1
IV	S-MART	transcript	26403	28775	.	-	.	seqedit=false;p_id=P3102;gene_id=YDL239C;tss_id=TSS3005;nbOverlaps=0;ID=YDL239C;Name=ADY3
VII	S-MART	transcript	1043276	1043749	.	+	.	seqedit=false;p_id=P4004;gene_id=YGR275W;tss_id=TSS3760;nbOverlaps=0;ID=YGR275W;Name=RTT102
IV	S-MART	transcript	22471	22608	.	-	.	seqedit=false;p_id=P3424;gene_id=YDL240C-A;tss_id=TSS5757;nbOverlaps=0;ID=YDL240C-A;Name=YDL240C-A
IV	S-MART	transcript	22823	25876	.	+	.	seqedit=false;p_id=P60;gene_id=YDL240W;tss_id=TSS477;nbOverlaps=0;ID=YDL240W;Name=LRG1
IV	S-MART	transcript	17577	18566	.	-	.	seqedit=false;p_id=P1066;gene_id=YDL243C;tss_id=TSS2528;nbOverlaps=0;ID=YDL243C;Name=AAD4
IV	S-MART	transcript	20635	21006	.	+	.	seqedit=false;p_id=P2845;gene_id=YDL241W;tss_id=TSS333;nbOverlaps=0;ID=YDL241W;Name=YDL241W
V	S-MART	transcript	425188	430449	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:17600:9410#0--HWUSI-EAS1656_0009_FC:3:17:17860:9166#0--HWUSI-EAS1656_0009_;p_id=P5743;gene_id=YER132C;tss_id=TSS3337;nbOverlaps=202;ID=YER132C;Name=PMD1
IV	S-MART	transcript	18959	19312	.	+	.	seqedit=false;p_id=P808;gene_id=YDL242W;tss_id=TSS1973;nbOverlaps=0;ID=YDL242W;Name=YDL242W
IV	S-MART	transcript	16204	17226	.	+	.	seqedit=false;p_id=P1602;gene_id=YDL244W;tss_id=TSS4247;nbOverlaps=0;ID=YDL244W;Name=THI13
VII	S-MART	transcript	1043819	1045480	.	-	.	seqedit=false;p_id=P4131;gene_id=YGR276C;tss_id=TSS4057;nbOverlaps=0;ID=YGR276C;Name=RNH70
IV	S-MART	transcript	11657	13360	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:3921:11814#0--HWUSI-EAS1656_0009_FC:3:49:17464:5461#0--HWUSI-EAS1656_0009;p_id=P5422;gene_id=YDL245C;tss_id=TSS5302;nbOverlaps=3;ID=YDL245C;Name=HXT15
IV	S-MART	transcript	8683	9756	.	-	.	seqedit=false;p_id=P2425;gene_id=YDL246C;tss_id=TSS2856;nbOverlaps=0;ID=YDL246C;Name=SOR2
IV	S-MART	transcript	5985	7814	.	+	.	seqedit=false;p_id=P4857;gene_id=YDL247W;tss_id=TSS1311;nbOverlaps=0;ID=YDL247W;Name=MPH2
IV	S-MART	transcript	3762	3836	.	+	.	seqedit=false;p_id=P500;gene_id=YDL247W-A;tss_id=TSS5772;nbOverlaps=0;ID=YDL247W-A;Name=YDL247W-A
V	S-MART	transcript	432495	433958	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:71:5372:10479#0--HWUSI-EAS1656_0009_FC:3:32:1098:8327#0--HWUSI-EAS1656_0009_;p_id=P2285;gene_id=YER133W;tss_id=TSS1602;nbOverlaps=1058;ID=YER133W;Name=GLC7
V	S-MART	exon	432495	432671	.	+	.	ID=YER133W-exon1;Name=GLC7-exon1;Parent=YER133W
V	S-MART	exon	433197	433958	.	+	.	ID=YER133W-exon2;Name=GLC7-exon2;Parent=YER133W
IV	S-MART	transcript	1802	2953	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:6411:16379#0--HWUSI-EAS1656_0009_FC:3:79:10015:12707#0--HWUSI-EAS1656_000;p_id=P1842;gene_id=YDL248W;tss_id=TSS2027;nbOverlaps=3;ID=YDL248W;Name=COS7
IV	S-MART	transcript	450220	452475	.	-	.	seqedit=false;p_id=P2948;gene_id=YDR001C;tss_id=TSS4942;nbOverlaps=0;ID=YDR001C;Name=NTH1
VII	S-MART	transcript	1045644	1046561	.	-	.	seqedit=false;p_id=P5254;gene_id=YGR277C;tss_id=TSS2197;nbOverlaps=0;ID=YGR277C;Name=CAB4
IV	S-MART	transcript	453045	453650	.	+	.	seqedit=false;p_id=P1455;gene_id=YDR002W;tss_id=TSS6845;nbOverlaps=0;ID=YDR002W;Name=YRB1
IV	S-MART	transcript	454122	454754	.	+	.	seqedit=false;p_id=P5420;gene_id=YDR003W;tss_id=TSS2253;nbOverlaps=0;ID=YDR003W;Name=RCR2
IV	S-MART	transcript	454782	454904	.	+	.	seqedit=false;p_id=P1355;gene_id=YDR003W-A;tss_id=TSS2114;nbOverlaps=0;ID=YDR003W-A;Name=YDR003W-A
IV	S-MART	transcript	455201	456583	.	+	.	seqedit=false;p_id=P250;gene_id=YDR004W;tss_id=TSS5975;nbOverlaps=0;ID=YDR004W;Name=RAD57
IV	S-MART	transcript	456836	458103	.	-	.	seqedit=false;p_id=P2695;gene_id=YDR005C;tss_id=TSS6420;nbOverlaps=0;ID=YDR005C;Name=MAF1
IV	S-MART	exon	456836	458017	.	-	.	ID=YDR005C-exon1;Name=MAF1-exon1;Parent=YDR005C
IV	S-MART	exon	458098	458103	.	-	.	ID=YDR005C-exon2;Name=MAF1-exon2;Parent=YDR005C
XIII	S-MART	transcript	415688	416053	.	-	.	seqedit=false;p_id=P2438;gene_id=YMR075C-A;tss_id=TSS4515;nbOverlaps=0;ID=YMR075C-A;Name=YMR075C-A
XIV	S-MART	transcript	456693	457169	.	-	.	seqedit=false;p_id=P1893;gene_id=YNL089C;tss_id=TSS6462;nbOverlaps=0;ID=YNL089C;Name=YNL089C
IV	S-MART	transcript	458542	461247	.	-	.	seqedit=false;p_id=P2969;gene_id=YDR006C;tss_id=TSS5313;nbOverlaps=0;ID=YDR006C;Name=SOK1
IV	S-MART	transcript	461842	462516	.	+	.	seqedit=false;p_id=P2498;gene_id=YDR007W;tss_id=TSS5698;nbOverlaps=0;ID=YDR007W;Name=TRP1
IV	S-MART	transcript	463434	464996	.	+	.	seqedit=false;p_id=P4022;gene_id=YDR009W;tss_id=TSS468;nbOverlaps=0;ID=YDR009W;Name=GAL3
IV	S-MART	transcript	462252	462602	.	-	.	seqedit=false;p_id=P6348;gene_id=YDR008C;tss_id=TSS849;nbOverlaps=0;ID=YDR008C;Name=YDR008C
IV	S-MART	transcript	465919	470424	.	+	.	seqedit=false;p_id=P664;gene_id=YDR011W;tss_id=TSS3243;nbOverlaps=0;ID=YDR011W;Name=SNQ2
XIII	S-MART	transcript	413036	413473	.	-	.	seqedit=false;p_id=P1131;gene_id=YMR074C;tss_id=TSS7006;nbOverlaps=0;ID=YMR074C;Name=YMR074C
IV	S-MART	transcript	465051	465383	.	-	.	seqedit=false;p_id=P3774;gene_id=YDR010C;tss_id=TSS4109;nbOverlaps=0;ID=YDR010C;Name=YDR010C
IV	S-MART	transcript	471853	472941	.	+	.	seqedit=false;p_id=P6076;gene_id=YDR012W;tss_id=TSS288;nbOverlaps=0;ID=YDR012W;Name=RPL4B
V	S-MART	transcript	437191	437532	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:46:7277:12312#0--HWUSI-EAS1656_0009_FC:3:54:15873:3934#0--HWUSI-EAS1656_0009;p_id=P886;gene_id=YER133W-A;tss_id=TSS1271;nbOverlaps=68;ID=YER133W-A;Name=YER133W-A
XIII	S-MART	transcript	413982	416036	.	+	.	seqedit=false;p_id=P1548;gene_id=YMR075W;tss_id=TSS1528;nbOverlaps=0;ID=YMR075W;Name=RCO1
XVI	S-MART	transcript	194512	195426	.	-	.	seqedit=false;p_id=P2450;gene_id=YPL186C;tss_id=TSS5016;nbOverlaps=0;ID=YPL186C;Name=UIP4
XI	S-MART	transcript	42423	46295	.	-	.	seqedit=false;p_id=P3093;gene_id=YKL209C;tss_id=TSS1664;nbOverlaps=0;ID=YKL209C;Name=STE6
XIII	S-MART	transcript	416196	420029	.	-	.	seqedit=false;p_id=P3671;gene_id=YMR076C;tss_id=TSS4257;nbOverlaps=0;ID=YMR076C;Name=PDS5
V	S-MART	transcript	437267	437803	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:46:7277:12312#0--HWUSI-EAS1656_0009_FC:3:54:15873:3934#0--HWUSI-EAS1656_0009;p_id=P5550;gene_id=YER134C;tss_id=TSS1441;nbOverlaps=76;ID=YER134C;Name=YER134C
VII	S-MART	transcript	1057783	1058724	.	-	.	seqedit=false;p_id=P2532;gene_id=YGR282C;tss_id=TSS2453;nbOverlaps=0;ID=YGR282C;Name=BGL2
XIII	S-MART	transcript	667537	668205	.	+	.	seqedit=false;p_id=P3714;gene_id=YMR202W;tss_id=TSS1970;nbOverlaps=0;ID=YMR202W;Name=ERG2
V	S-MART	transcript	437952	438344	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:115:13556:3813#0--HWUSI-EAS1656_0009_FC:3:27:17761:3402#0--HWUSI-EAS1656_000;p_id=P3532;gene_id=YER135C;tss_id=TSS4959;nbOverlaps=8;ID=YER135C;Name=YER135C
VII	S-MART	transcript	1060658	1061590	.	-	.	seqedit=false;p_id=P6383;gene_id=YGR284C;tss_id=TSS4470;nbOverlaps=0;ID=YGR284C;Name=ERV29
XIV	S-MART	transcript	452408	456130	.	+	.	seqedit=false;p_id=P4717;gene_id=YNL091W;tss_id=TSS1725;nbOverlaps=0;ID=YNL091W;Name=NST1
V	S-MART	transcript	447702	449024	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P2643;gene_id=YER137C-A;tss_id=TSS2311;nbOverlaps=33;ID=YER137C-A;Name=YER137C-A
VII	S-MART	transcript	1059015	1060040	.	-	.	seqedit=false;p_id=P56;gene_id=YGR283C;tss_id=TSS5774;nbOverlaps=0;ID=YGR283C;Name=YGR283C
V	S-MART	transcript	441373	441819	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:7999:9193#0--HWUSI-EAS1656_0009_FC:3:53:17053:19220#0--HWUSI-EAS1656_0009;p_id=P2101;gene_id=YER137C;tss_id=TSS1038;nbOverlaps=7;ID=YER137C;Name=YER137C
XVI	S-MART	transcript	195253	195648	.	+	.	seqedit=false;p_id=P5875;gene_id=YPL185W;tss_id=TSS4010;nbOverlaps=0;ID=YPL185W;Name=YPL185W
V	S-MART	transcript	441575	441880	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:7999:9193#0--HWUSI-EAS1656_0009_FC:3:81:8917:15822#0--HWUSI-EAS1656_0009_;p_id=P6221;gene_id=YER137W-A;tss_id=TSS6460;nbOverlaps=4;ID=YER137W-A;Name=YER137W-A
XV	S-MART	transcript	601383	602342	.	-	.	seqedit=false;p_id=P4783;gene_id=YOR143C;tss_id=TSS1888;nbOverlaps=0;ID=YOR143C;Name=THI80
V	S-MART	transcript	449474	449578	.	+	.	seqedit=false;p_id=P6219;gene_id=YER138W-A;tss_id=TSS5679;nbOverlaps=0;ID=YER138W-A;Name=YER138W-A
VII	S-MART	transcript	1067222	1068991	.	-	.	seqedit=false;p_id=P4065;gene_id=YGR287C;tss_id=TSS4305;nbOverlaps=0;ID=YGR287C;Name=IMA1
V	S-MART	transcript	443756	449024	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:10578:16663#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_000;p_id=P4992;gene_id=YER138C;tss_id=TSS2311;nbOverlaps=114;ID=YER138C;Name=YER138C
V	S-MART	exon	443756	447721	.	-	.	ID=YER138C-exon1;Name=YER138C-exon1;Parent=YER138C
V	S-MART	exon	447723	449024	.	-	.	ID=YER138C-exon2;Name=YER138C-exon2;Parent=YER138C
VII	S-MART	transcript	1070293	1071714	.	+	.	seqedit=false;p_id=P6566;gene_id=YGR288W;tss_id=TSS1047;nbOverlaps=0;ID=YGR288W;Name=MAL13
XIV	S-MART	transcript	449868	450530	.	+	.	seqedit=false;p_id=P5674;gene_id=YNL093W;tss_id=TSS3734;nbOverlaps=0;ID=YNL093W;Name=YPT53
VII	S-MART	transcript	1073963	1075813	.	-	.	seqedit=false;p_id=P3130;gene_id=YGR289C;tss_id=TSS1846;nbOverlaps=0;ID=YGR289C;Name=MAL11
VII	S-MART	transcript	1076599	1078353	.	+	.	seqedit=false;p_id=P6391;gene_id=YGR292W;tss_id=TSS380;nbOverlaps=0;ID=YGR292W;Name=MAL12
I	S-MART	transcript	57029	57385	.	-	.	seqedit=false;p_id=P5792;gene_id=YAL046C;tss_id=TSS4158;nbOverlaps=0;ID=YAL046C;Name=AIM1
I	S-MART	transcript	10091	10399	.	+	.	seqedit=false;p_id=P2552;gene_id=YAL066W;tss_id=TSS2674;nbOverlaps=0;ID=YAL066W;Name=YAL066W
I	S-MART	transcript	2480	2707	.	+	.	seqedit=false;p_id=P5000;gene_id=YAL067W-A;tss_id=TSS1247;nbOverlaps=0;ID=YAL067W-A;Name=YAL067W-A
I	S-MART	transcript	1807	2169	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:9:6232:2282#0;p_id=P3469;gene_id=YAL068C;tss_id=TSS248;nbOverlaps=1;ID=YAL068C;Name=PAU8
V	S-MART	transcript	450563	451243	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:8235:14179#0--HWUSI-EAS1656_0009_FC:3:14:11529:20437#0--HWUSI-EAS1656_000;p_id=P1407;gene_id=YER139C;tss_id=TSS3532;nbOverlaps=47;ID=YER139C;Name=RTR1
I	S-MART	transcript	538	792	.	+	.	seqedit=false;p_id=P3278;gene_id=YAL068W-A;tss_id=TSS5440;nbOverlaps=0;ID=YAL068W-A;Name=YAL068W-A
I	S-MART	transcript	154065	154724	.	-	.	seqedit=false;p_id=P3016;gene_id=YAR002C-A;tss_id=TSS3647;nbOverlaps=0;ID=YAR002C-A;Name=ERP1
VII	S-MART	transcript	1075482	1075925	.	+	.	seqedit=false;p_id=P6147;gene_id=YGR290W;tss_id=TSS324;nbOverlaps=0;ID=YGR290W;Name=YGR290W
I	S-MART	transcript	335	649	.	+	.	seqedit=false;p_id=P1273;gene_id=YAL069W;tss_id=TSS1127;nbOverlaps=0;ID=YAL069W;Name=YAL069W
I	S-MART	transcript	152257	153876	.	+	.	seqedit=false;p_id=P5160;gene_id=YAR002W;tss_id=TSS6226;nbOverlaps=0;ID=YAR002W;Name=NUP60
XIV	S-MART	transcript	586090	586175	.	+	.	seqedit=false;gene_id=snR66;tss_id=TSS3550;nbOverlaps=0;ID=snR66;Name=SNR66
I	S-MART	transcript	155005	156285	.	+	.	seqedit=false;p_id=P1636;gene_id=YAR003W;tss_id=TSS2359;nbOverlaps=0;ID=YAR003W;Name=SWD1
I	S-MART	transcript	156754	158619	.	-	.	seqedit=false;p_id=P5611;gene_id=YAR007C;tss_id=TSS5828;nbOverlaps=0;ID=YAR007C;Name=RFA1
V	S-MART	transcript	453459	454919	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:111:17422:14759#0--HWUSI-EAS1656_0009_FC:3:39:18631:6777#0--HWUSI-EAS1656_00;p_id=P5273;gene_id=YER141W;tss_id=TSS2246;nbOverlaps=374;ID=YER141W;Name=COX15
I	S-MART	transcript	158966	159793	.	+	.	seqedit=false;p_id=P5862;gene_id=YAR008W;tss_id=TSS1650;nbOverlaps=0;ID=YAR008W;Name=SEN34
I	S-MART	transcript	166742	168871	.	-	.	seqedit=false;p_id=P2678;gene_id=YAR014C;tss_id=TSS5060;nbOverlaps=0;ID=YAR014C;Name=BUD14
VII	S-MART	transcript	1076283	1076504	.	-	.	seqedit=false;p_id=P5912;gene_id=YGR291C;tss_id=TSS2319;nbOverlaps=0;ID=YGR291C;Name=YGR291C
I	S-MART	transcript	160597	164187	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:1103:13645#0--HWUSI-EAS1656_0009_FC:3:87:9399:19654#0--HWUSI-EAS1656_0009;p_id=P3725;gene_id=YAR009C;tss_id=TSS3712;nbOverlaps=37;ID=YAR009C;Name=YAR009C
I	S-MART	transcript	164544	165866	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P2614;gene_id=YAR010C;tss_id=TSS3899;nbOverlaps=31;ID=YAR010C;Name=YAR010C
V	S-MART	transcript	61352	61433	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:14977:16309#0--HWUSI-EAS1656_0009_FC:3:23:16577:20624#0--HWUSI-EAS1656_00;gene_id=snR67;tss_id=TSS3007;nbOverlaps=2356;ID=snR67;Name=SNR67
I	S-MART	transcript	169375	170295	.	+	.	seqedit=false;p_id=P16;gene_id=YAR015W;tss_id=TSS177;nbOverlaps=0;ID=YAR015W;Name=ADE1
XIII	S-MART	transcript	670063	671325	.	-	.	seqedit=false;p_id=P5389;gene_id=YMR204C;tss_id=TSS3542;nbOverlaps=0;ID=YMR204C;Name=INP1
XV	S-MART	transcript	882899	884134	.	+	.	seqedit=false;p_id=P4410;gene_id=YOR303W;tss_id=TSS5154;nbOverlaps=0;ID=YOR303W;Name=CPA1
I	S-MART	transcript	170396	171703	.	-	.	seqedit=false;p_id=P6643;gene_id=YAR018C;tss_id=TSS6012;nbOverlaps=0;ID=YAR018C;Name=KIN3
V	S-MART	transcript	451565	453235	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:110:16237:9049#0--HWUSI-EAS1656_0009_FC:3:78:11011:1894#0--HWUSI-EAS1656_000;p_id=P3470;gene_id=YER140W;tss_id=TSS136;nbOverlaps=115;ID=YER140W;Name=YER140W
I	S-MART	transcript	172211	175135	.	-	.	seqedit=false;p_id=P5159;gene_id=YAR019C;tss_id=TSS7037;nbOverlaps=0;ID=YAR019C;Name=CDC15
I	S-MART	transcript	174998	175330	.	+	.	seqedit=false;p_id=P2781;gene_id=YAR019W-A;tss_id=TSS1007;nbOverlaps=0;ID=YAR019W-A;Name=YAR019W-A
XIII	S-MART	transcript	437491	438789	.	+	.	seqedit=false;p_id=P458;gene_id=YMR085W;tss_id=TSS6028;nbOverlaps=0;ID=YMR085W;Name=YMR085W
I	S-MART	transcript	176856	177023	.	-	.	seqedit=false;p_id=P2235;gene_id=YAR020C;tss_id=TSS1634;nbOverlaps=0;ID=YAR020C;Name=PAU7
XIV	S-MART	transcript	450871	452073	.	+	.	seqedit=false;p_id=P3723;gene_id=YNL092W;tss_id=TSS4463;nbOverlaps=0;ID=YNL092W;Name=YNL092W
I	S-MART	transcript	183770	184477	.	+	.	seqedit=false;p_id=P2582;gene_id=YAR027W;tss_id=TSS3921;nbOverlaps=0;ID=YAR027W;Name=UIP3
IX	S-MART	transcript	97111	97246	.	+	.	seqedit=false;gene_id=snR68;tss_id=TSS2688;nbOverlaps=0;ID=snR68;Name=SNR68
XIV	S-MART	transcript	186346	186885	.	-	.	seqedit=false;p_id=P2714;gene_id=YNL245C;tss_id=TSS539;nbOverlaps=0;ID=YNL245C;Name=CWC25
I	S-MART	transcript	179281	179820	.	-	.	seqedit=false;p_id=P1910;gene_id=YAR023C;tss_id=TSS6323;nbOverlaps=0;ID=YAR023C;Name=YAR023C
I	S-MART	transcript	186836	187732	.	+	.	seqedit=false;p_id=P6589;gene_id=YAR031W;tss_id=TSS1848;nbOverlaps=0;ID=YAR031W;Name=PRM9
V	S-MART	transcript	455146	456036	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:17477:8582#0--HWUSI-EAS1656_0009_FC:3:36:16363:7467#0--HWUSI-EAS1656_0009;p_id=P2376;gene_id=YER142C;tss_id=TSS3506;nbOverlaps=27;ID=YER142C;Name=MAG1
I	S-MART	transcript	184892	185596	.	+	.	seqedit=false;p_id=P5637;gene_id=YAR028W;tss_id=TSS8;nbOverlaps=0;ID=YAR028W;Name=YAR028W
XIV	S-MART	transcript	680694	685433	.	-	.	seqedit=false;p_id=P1025;gene_id=YNR031C;tss_id=TSS5469;nbOverlaps=0;ID=YNR031C;Name=SSK2
I	S-MART	transcript	186321	186545	.	+	.	seqedit=false;p_id=P5972;gene_id=YAR029W;tss_id=TSS2646;nbOverlaps=0;ID=YAR029W;Name=YAR029W
XIII	S-MART	transcript	443414	445102	.	-	.	seqedit=false;p_id=P127;gene_id=YMR088C;tss_id=TSS4674;nbOverlaps=0;ID=YMR088C;Name=VBA1
I	S-MART	transcript	186512	186853	.	-	.	seqedit=false;p_id=P1823;gene_id=YAR030C;tss_id=TSS3793;nbOverlaps=0;ID=YAR030C;Name=YAR030C
I	S-MART	transcript	188107	188811	.	+	.	seqedit=false;p_id=P846;gene_id=YAR033W;tss_id=TSS3058;nbOverlaps=0;ID=YAR033W;Name=MST28
XI	S-MART	transcript	364776	364876	.	+	.	seqedit=false;gene_id=snR69;tss_id=TSS3754;nbOverlaps=0;ID=snR69;Name=SNR69
I	S-MART	transcript	192337	192417	.	-	.	seqedit=false;p_id=P133;gene_id=YAR035C-A;tss_id=TSS3556;nbOverlaps=0;ID=YAR035C-A;Name=YAR035C-A
I	S-MART	transcript	190193	192256	.	+	.	seqedit=false;p_id=P2617;gene_id=YAR035W;tss_id=TSS4931;nbOverlaps=0;ID=YAR035W;Name=YAT1
XI	S-MART	transcript	3503	5620	.	-	.	seqedit=false;p_id=P1722;gene_id=YKL222C;tss_id=TSS3173;nbOverlaps=0;ID=YKL222C;Name=YKL222C
I	S-MART	transcript	192619	196185	.	+	.	seqedit=false;p_id=P6522;gene_id=YAR042W;tss_id=TSS1474;nbOverlaps=0;ID=YAR042W;Name=SWH1
I	S-MART	transcript	203403	208016	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:9754:12802#0--HWUSI-EAS1656_0009_FC:3:48:6143:12452#0--HWUSI-EAS1656_0009;p_id=P1778;gene_id=YAR050W;tss_id=TSS2806;nbOverlaps=27;ID=YAR050W;Name=FLO1
XIII	S-MART	transcript	439208	442090	.	+	.	seqedit=false;p_id=P3228;gene_id=YMR086W;tss_id=TSS1181;nbOverlaps=0;ID=YMR086W;Name=YMR086W
I	S-MART	transcript	201467	201787	.	-	.	seqedit=false;p_id=P3629;gene_id=YAR047C;tss_id=TSS1947;nbOverlaps=0;ID=YAR047C;Name=YAR047C
I	S-MART	transcript	225460	226863	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:17621:18125#0--HWUSI-EAS1656_0009_FC:3:100:8547:14823#0--HWUSI-EAS1656_0;p_id=P4575;gene_id=YAR071W;tss_id=TSS2979;nbOverlaps=53;ID=YAR071W;Name=PHO11
VII	S-MART	transcript	939459	939672	.	-	.	seqedit=false;gene_id=snR7-L;tss_id=TSS6911;nbOverlaps=0;ID=snR7-L;Name=SNR7-L
I	S-MART	transcript	208367	208663	.	+	.	seqedit=false;p_id=P105;gene_id=YAR053W;tss_id=TSS6822;nbOverlaps=0;ID=YAR053W;Name=YAR053W
I	S-MART	transcript	217157	217492	.	-	.	seqedit=false;p_id=P2690;gene_id=YAR060C;tss_id=TSS2682;nbOverlaps=0;ID=YAR060C;Name=YAR060C
XVI	S-MART	transcript	191406	192650	.	+	.	seqedit=false;p_id=P5571;gene_id=YPL188W;tss_id=TSS4218;nbOverlaps=0;ID=YPL188W;Name=POS5
V	S-MART	transcript	457806	460223	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:1767:8165#0--HWUSI-EAS1656_0009_FC:3:95:5170:15710#0--HWUSI-EAS1656_0009_;p_id=P6451;gene_id=YER144C;tss_id=TSS3224;nbOverlaps=54;ID=YER144C;Name=UBP5
I	S-MART	transcript	218140	218343	.	+	.	seqedit=false;gene_id=YAR061W;tss_id=TSS2533;nbOverlaps=0;ID=YAR061W;Name=YAR061W
I	S-MART	transcript	218549	219145	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:3242:8287#0--HWUSI-EAS1656_0009_FC:3:66:6823:12358#0;gene_id=YAR062W;tss_id=TSS6168;nbOverlaps=2;ID=YAR062W;Name=YAR062W
VII	S-MART	transcript	1088870	1089445	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P861;gene_id=YGR296C-A;tss_id=TSS1390;nbOverlaps=32;ID=YGR296C-A;Name=YGR296C-A
I	S-MART	transcript	220198	220497	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:7550:14373#0;p_id=P3621;gene_id=YAR064W;tss_id=TSS5368;nbOverlaps=1;ID=YAR064W;Name=YAR064W
I	S-MART	transcript	221049	221660	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:4282:19264#0--HWUSI-EAS1656_0009_FC:3:13:19396:18323#0--HWUSI-EAS1656_000;p_id=P3065;gene_id=YAR066W;tss_id=TSS3836;nbOverlaps=10;ID=YAR066W;Name=YAR066W
VII	S-MART	transcript	939494	939672	.	-	.	seqedit=false;gene_id=snR7-S;tss_id=TSS6911;nbOverlaps=0;ID=snR7-S;Name=SNR7-S
I	S-MART	transcript	222406	222891	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:15898:4239#0--HWUSI-EAS1656_0009_FC:3:52:16880:21226#0--HWUSI-EAS1656_000;p_id=P563;gene_id=YAR068W;tss_id=TSS6434;nbOverlaps=20;ID=YAR068W;Name=YAR068W
I	S-MART	transcript	224011	224304	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:3560:17712#0--HWUSI-EAS1656_0009_FC:3:63:17285:19819#0;p_id=P477;gene_id=YAR069C;tss_id=TSS2603;nbOverlaps=2;ID=YAR069C;Name=YAR069C
XI	S-MART	transcript	440608	442722	.	-	.	seqedit=false;p_id=P5567;gene_id=YKR001C;tss_id=TSS4038;nbOverlaps=0;ID=YKR001C;Name=VPS1
I	S-MART	transcript	224563	224862	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:2193:7166#0--HWUSI-EAS1656_0009_FC:3:96:1678:1625#0;p_id=P856;gene_id=YAR070C;tss_id=TSS433;nbOverlaps=2;ID=YAR070C;Name=YAR070C
I	S-MART	transcript	227742	228953	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:11551:6472#0--HWUSI-EAS1656_0009_FC:3:4:17122:18392#0--HWUSI-EAS1656_000;p_id=P5043;gene_id=YAR073W;tss_id=TSS874;nbOverlaps=141;ID=YAR073W;Name=IMD1
VII	S-MART	transcript	1089746	1090228	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:8694:17363#0--HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_;p_id=P1871;gene_id=YGR296C-B;tss_id=TSS1206;nbOverlaps=76;ID=YGR296C-B;Name=YGR296C-B
II	S-MART	transcript	237153	237467	.	-	.	seqedit=false;p_id=P208;gene_id=YBL001C;tss_id=TSS5915;nbOverlaps=0;ID=YBL001C;Name=ECM15
I	S-MART	transcript	228844	229317	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:16098:19793#0--HWUSI-EAS1656_0009_FC:3:118:14881:9576#0--HWUSI-EAS1656_00;p_id=P4950;gene_id=YAR075W;tss_id=TSS5050;nbOverlaps=40;ID=YAR075W;Name=YAR075W
XVI	S-MART	transcript	718887	719050	.	-	.	seqedit=false;gene_id=snR70;tss_id=TSS3800;nbOverlaps=0;ID=snR70;Name=SNR70
II	S-MART	transcript	236492	236887	.	+	.	seqedit=false;p_id=P4678;gene_id=YBL002W;tss_id=TSS1604;nbOverlaps=0;ID=YBL002W;Name=HTB2
XIII	S-MART	transcript	671887	674766	.	-	.	seqedit=false;p_id=P1124;gene_id=YMR205C;tss_id=TSS2182;nbOverlaps=0;ID=YMR205C;Name=PFK2
II	S-MART	transcript	235394	235792	.	-	.	seqedit=false;p_id=P3578;gene_id=YBL003C;tss_id=TSS4733;nbOverlaps=0;ID=YBL003C;Name=HTA2
XI	S-MART	transcript	451	798	.	+	.	seqedit=false;p_id=P4842;gene_id=YKL225W;tss_id=TSS5354;nbOverlaps=0;ID=YKL225W;Name=YKL225W
II	S-MART	transcript	227636	235117	.	+	.	seqedit=false;p_id=P4255;gene_id=YBL004W;tss_id=TSS4599;nbOverlaps=0;ID=YBL004W;Name=UTP20
II	S-MART	transcript	217470	220400	.	+	.	seqedit=false;p_id=P4454;gene_id=YBL005W;tss_id=TSS3125;nbOverlaps=0;ID=YBL005W;Name=PDR3
VII	S-MART	transcript	1084864	1090591	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0;p_id=P1560;gene_id=YGR296W;tss_id=TSS3775;nbOverlaps=563;ID=YGR296W;Name=YRF1-3
VII	S-MART	exon	1084864	1084882	.	+	.	ID=YGR296W-exon1;Name=YRF1-3-exon1;Parent=YGR296W
VII	S-MART	exon	1085031	1090591	.	+	.	ID=YGR296W-exon2;Name=YRF1-3-exon2;Parent=YGR296W
II	S-MART	transcript	221330	222652	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009_FC:3:15:9777:20932#0;p_id=P3386;gene_id=YBL005W-A;tss_id=TSS172;nbOverlaps=2;ID=YBL005W-A;Name=YBL005W-A
XIV	S-MART	transcript	447611	449374	.	+	.	seqedit=false;p_id=P2940;gene_id=YNL094W;tss_id=TSS5475;nbOverlaps=0;ID=YNL094W;Name=APP1
II	S-MART	transcript	221330	226598	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P4264;gene_id=YBL005W-B;tss_id=TSS172;nbOverlaps=450;ID=YBL005W-B;Name=YBL005W-B
II	S-MART	exon	221330	222634	.	+	.	ID=YBL005W-B-exon1;Name=YBL005W-B-exon1;Parent=YBL005W-B
II	S-MART	exon	222636	226598	.	+	.	ID=YBL005W-B-exon2;Name=YBL005W-B-exon2;Parent=YBL005W-B
VIII	S-MART	transcript	411228	411317	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:2697:2271#0--HWUSI-EAS1656_0009_FC:3:62:11905:8181#0--HWUSI-EAS1656_0009_;gene_id=snR71;tss_id=TSS6650;nbOverlaps=7646;ID=snR71;Name=SNR71
XI	S-MART	transcript	443232	444938	.	+	.	seqedit=false;p_id=P3376;gene_id=YKR002W;tss_id=TSS2490;nbOverlaps=0;ID=YKR002W;Name=PAP1
II	S-MART	transcript	216587	217129	.	-	.	seqedit=false;p_id=P2175;gene_id=YBL006C;tss_id=TSS3576;nbOverlaps=0;ID=YBL006C;Name=LDB7
II	S-MART	transcript	216711	216860	.	+	.	seqedit=false;p_id=P4780;gene_id=YBL006W-A;tss_id=TSS5315;nbOverlaps=0;ID=YBL006W-A;Name=YBL006W-A
XV	S-MART	transcript	628360	630540	.	-	.	seqedit=false;p_id=P5132;gene_id=YOR156C;tss_id=TSS6582;nbOverlaps=0;ID=YOR156C;Name=NFI1
II	S-MART	transcript	212632	216366	.	-	.	seqedit=false;p_id=P6267;gene_id=YBL007C;tss_id=TSS3341;nbOverlaps=0;ID=YBL007C;Name=SLA1
II	S-MART	transcript	209653	212175	.	+	.	seqedit=false;p_id=P3640;gene_id=YBL008W;tss_id=TSS5987;nbOverlaps=0;ID=YBL008W;Name=HIR1
XIII	S-MART	transcript	298554	298651	.	+	.	seqedit=false;gene_id=snR72;tss_id=TSS930;nbOverlaps=0;ID=snR72;Name=SNR72
II	S-MART	transcript	209409	209648	.	+	.	seqedit=false;p_id=P1054;gene_id=YBL008W-A;tss_id=TSS1083;nbOverlaps=0;ID=YBL008W-A;Name=YBL008W-A
II	S-MART	transcript	207194	209224	.	+	.	seqedit=false;p_id=P5492;gene_id=YBL009W;tss_id=TSS1022;nbOverlaps=0;ID=YBL009W;Name=ALK2
XI	S-MART	transcript	445381	446727	.	+	.	seqedit=false;p_id=P4212;gene_id=YKR003W;tss_id=TSS3768;nbOverlaps=0;ID=YKR003W;Name=OSH6
II	S-MART	transcript	203538	205817	.	+	.	seqedit=false;p_id=P5758;gene_id=YBL011W;tss_id=TSS2820;nbOverlaps=0;ID=YBL011W;Name=SCT1
II	S-MART	transcript	206107	206949	.	-	.	seqedit=false;p_id=P5998;gene_id=YBL010C;tss_id=TSS5223;nbOverlaps=0;ID=YBL010C;Name=YBL010C
XV	S-MART	transcript	630966	631751	.	-	.	seqedit=false;p_id=P4624;gene_id=YOR157C;tss_id=TSS4412;nbOverlaps=0;ID=YOR157C;Name=PUP1
II	S-MART	transcript	202056	203261	.	+	.	seqedit=false;p_id=P5832;gene_id=YBL013W;tss_id=TSS5640;nbOverlaps=0;ID=YBL013W;Name=FMT1
II	S-MART	transcript	203406	203807	.	-	.	seqedit=false;p_id=P2507;gene_id=YBL012C;tss_id=TSS6539;nbOverlaps=0;ID=YBL012C;Name=YBL012C
XIII	S-MART	transcript	298307	298412	.	+	.	seqedit=false;gene_id=snR73;tss_id=TSS1050;nbOverlaps=0;ID=snR73;Name=SNR73
II	S-MART	transcript	199064	201748	.	-	.	seqedit=false;p_id=P5524;gene_id=YBL014C;tss_id=TSS3871;nbOverlaps=0;ID=YBL014C;Name=RRN6
II	S-MART	transcript	194122	195702	.	+	.	seqedit=false;p_id=P5634;gene_id=YBL015W;tss_id=TSS4246;nbOverlaps=0;ID=YBL015W;Name=ACH1
XVI	S-MART	transcript	188307	188513	.	-	.	seqedit=false;p_id=P663;gene_id=YPL189C-A;tss_id=TSS3757;nbOverlaps=0;ID=YPL189C-A;Name=COA2
XI	S-MART	transcript	446799	448036	.	-	.	seqedit=false;p_id=P1395;gene_id=YKR004C;tss_id=TSS1840;nbOverlaps=0;ID=YKR004C;Name=ECM9
XI	S-MART	exon	446799	447706	.	-	.	ID=YKR004C-exon1;Name=ECM9-exon1;Parent=YKR004C
XI	S-MART	exon	447811	448036	.	-	.	ID=YKR004C-exon2;Name=ECM9-exon2;Parent=YKR004C
XIII	S-MART	transcript	454015	455556	.	+	.	seqedit=false;p_id=P4401;gene_id=YMR093W;tss_id=TSS2839;nbOverlaps=0;ID=YMR093W;Name=UTP15
XIII	S-MART	transcript	298138	298225	.	+	.	seqedit=false;gene_id=snR74;tss_id=TSS3747;nbOverlaps=0;ID=snR74;Name=SNR74
XV	S-MART	transcript	633282	633566	.	-	.	seqedit=false;p_id=P3019;gene_id=YOR159C;tss_id=TSS4773;nbOverlaps=0;ID=YOR159C;Name=SME1
XIII	S-MART	transcript	297918	298006	.	+	.	seqedit=false;gene_id=snR75;tss_id=TSS3741;nbOverlaps=0;ID=snR75;Name=SNR75
XIII	S-MART	transcript	677193	683564	.	-	.	seqedit=false;p_id=P1783;gene_id=YMR207C;tss_id=TSS1351;nbOverlaps=0;ID=YMR207C;Name=HFA1
XV	S-MART	transcript	633839	636757	.	+	.	seqedit=false;p_id=P6622;gene_id=YOR160W;tss_id=TSS6221;nbOverlaps=0;ID=YOR160W;Name=MTR10
XIV	S-MART	transcript	443398	444315	.	-	.	seqedit=false;p_id=P5850;gene_id=YNL096C;tss_id=TSS1200;nbOverlaps=0;ID=YNL096C;Name=RPS7B
XIV	S-MART	exon	443398	443826	.	-	.	ID=YNL096C-exon1;Name=RPS7B-exon1;Parent=YNL096C
XIV	S-MART	exon	444172	444315	.	-	.	ID=YNL096C-exon2;Name=RPS7B-exon2;Parent=YNL096C
XIII	S-MART	transcript	297725	297833	.	+	.	seqedit=false;gene_id=snR76;tss_id=TSS6432;nbOverlaps=0;ID=snR76;Name=SNR76
V	S-MART	transcript	466208	467470	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:9193:9114#0--HWUSI-EAS1656_0009_FC:3:30:8480:11561#0--HWUSI-EAS1656_0009_;p_id=P4111;gene_id=YER149C;tss_id=TSS1924;nbOverlaps=153;ID=YER149C;Name=PEA2
XIII	S-MART	transcript	458408	459301	.	+	.	seqedit=false;p_id=P806;gene_id=YMR096W;tss_id=TSS2091;nbOverlaps=0;ID=YMR096W;Name=SNZ1
XIII	S-MART	transcript	297506	297593	.	+	.	seqedit=false;gene_id=snR77;tss_id=TSS2893;nbOverlaps=0;ID=snR77;Name=SNR77
V	S-MART	transcript	468370	468816	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:18466:9658#0--HWUSI-EAS1656_0009_FC:3:94:13151:10054#0--HWUSI-EAS1656_000;p_id=P5426;gene_id=YER150W;tss_id=TSS2487;nbOverlaps=20;ID=YER150W;Name=SPI1
XIII	S-MART	transcript	459424	460527	.	-	.	seqedit=false;p_id=P2361;gene_id=YMR097C;tss_id=TSS5273;nbOverlaps=0;ID=YMR097C;Name=MTG1
XIII	S-MART	transcript	297278	297364	.	+	.	seqedit=false;gene_id=snR78;tss_id=TSS834;nbOverlaps=0;ID=snR78;Name=SNR78
XIII	S-MART	transcript	460771	462609	.	-	.	seqedit=false;p_id=P854;gene_id=YMR098C;tss_id=TSS3929;nbOverlaps=0;ID=YMR098C;Name=ATP25
XII	S-MART	transcript	348427	348510	.	-	.	seqedit=false;gene_id=snR79;tss_id=TSS1718;nbOverlaps=0;ID=snR79;Name=SNR79
VIII	S-MART	transcript	99219	100403	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:13654:3757#0--HWUSI-EAS1656_0009_FC:3:84:17044:18639#0--HWUSI-EAS1656_00;p_id=P137;gene_id=YHL004W;tss_id=TSS4962;nbOverlaps=110;ID=YHL004W;Name=MRP4
XV	S-MART	transcript	832332	832521	.	+	.	seqedit=false;gene_id=snR8;tss_id=TSS1672;nbOverlaps=0;ID=snR8;Name=SNR8
XIII	S-MART	transcript	675896	676837	.	+	.	seqedit=false;p_id=P1514;gene_id=YMR206W;tss_id=TSS3579;nbOverlaps=0;ID=YMR206W;Name=YMR206W
V	S-MART	transcript	472657	473988	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:23:5910:12705#0--HWUSI-EAS1656_0009_FC:3:28:18055:14560#0--HWUSI-EAS1656_000;p_id=P4956;gene_id=YER152C;tss_id=TSS1689;nbOverlaps=229;ID=YER152C;Name=YER152C
XIII	S-MART	transcript	463934	464827	.	-	.	seqedit=false;p_id=P893;gene_id=YMR099C;tss_id=TSS1900;nbOverlaps=0;ID=YMR099C;Name=YMR099C
XIV	S-MART	transcript	444912	446840	.	-	.	seqedit=false;p_id=P4150;gene_id=YNL095C;tss_id=TSS5116;nbOverlaps=0;ID=YNL095C;Name=YNL095C
V	S-MART	transcript	52150	52320	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:41:18150:10668#0--HWUSI-EAS1656_0009_FC:3:40:13301:3932#0--HWUSI-EAS1656_000;gene_id=snR80;tss_id=TSS4538;nbOverlaps=11095;ID=snR80;Name=SNR80
V	S-MART	transcript	474041	474805	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:9912:1520#0--HWUSI-EAS1656_0009_FC:3:18:14872:8898#0--HWUSI-EAS1656_0009_;p_id=P2887;gene_id=YER153C;tss_id=TSS4917;nbOverlaps=14;ID=YER153C;Name=PET122
XIII	S-MART	transcript	468445	469476	.	-	.	seqedit=false;p_id=P2290;gene_id=YMR101C;tss_id=TSS2567;nbOverlaps=0;ID=YMR101C;Name=SRT1
XV	S-MART	transcript	234346	234546	.	+	.	seqedit=false;gene_id=snR81;tss_id=TSS3227;nbOverlaps=0;ID=snR81;Name=SNR81
V	S-MART	transcript	475020	476228	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:2438:13562#0--HWUSI-EAS1656_0009_FC:3:74:10477:9060#0--HWUSI-EAS1656_0009;p_id=P1276;gene_id=YER154W;tss_id=TSS154;nbOverlaps=66;ID=YER154W;Name=OXA1
VIII	S-MART	transcript	97732	98085	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:13769:2288#0--HWUSI-EAS1656_0009_FC:3:52:1879:17687#0--HWUSI-EAS1656_000;p_id=P3976;gene_id=YHL006W-A;tss_id=TSS2111;nbOverlaps=14;ID=YHL006W-A;Name=YHL006W-A
I	S-MART	transcript	52801	54789	.	-	.	seqedit=false;p_id=P1676;gene_id=YAL048C;tss_id=TSS6850;nbOverlaps=0;ID=YAL048C;Name=GEM1
VII	S-MART	transcript	316788	317055	.	+	.	seqedit=false;gene_id=snR82;tss_id=TSS6564;nbOverlaps=0;ID=snR82;Name=SNR82
V	S-MART	transcript	476345	482848	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:10395:20472#0--HWUSI-EAS1656_0009_FC:3:82:5879:9740#0--HWUSI-EAS1656_0009_;p_id=P5341;gene_id=YER155C;tss_id=TSS6807;nbOverlaps=1379;ID=YER155C;Name=BEM2
VIII	S-MART	transcript	95118	97937	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:95:2303:12474#0--HWUSI-EAS1656_0009_FC:3:37:10732:6675#0--HWUSI-EAS1656_0009;p_id=P3118;gene_id=YHL007C;tss_id=TSS895;nbOverlaps=291;ID=YHL007C;Name=STE20
XIII	S-MART	transcript	626349	626654	.	+	.	seqedit=false;gene_id=snR83;tss_id=TSS6686;nbOverlaps=0;ID=snR83;Name=SNR83
XIII	S-MART	transcript	922202	922444	.	-	.	seqedit=false;p_id=P1533;gene_id=YMR324C;tss_id=TSS5155;nbOverlaps=0;ID=YMR324C;Name=YMR324C
XIV	S-MART	transcript	627456	628616	.	+	.	seqedit=false;p_id=P3263;gene_id=YNL001W;tss_id=TSS74;nbOverlaps=0;ID=YNL001W;Name=DOM34
V	S-MART	transcript	491487	491702	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:54:11060:18878#0--HWUSI-EAS1656_0009_FC:3:92:12569:20906#0--HWUSI-EAS1656_00;p_id=P3769;gene_id=YER158W-A;tss_id=TSS6494;nbOverlaps=18;ID=YER158W-A;Name=YER158W-A
XIII	S-MART	transcript	472902	473264	.	-	.	seqedit=false;p_id=P4492;gene_id=YMR103C;tss_id=TSS3155;nbOverlaps=0;ID=YMR103C;Name=YMR103C
XIV	S-MART	transcript	626174	627142	.	-	.	seqedit=false;p_id=P3720;gene_id=YNL002C;tss_id=TSS6392;nbOverlaps=0;ID=YNL002C;Name=RLP7
XIV	S-MART	transcript	624975	625829	.	-	.	seqedit=false;p_id=P2548;gene_id=YNL003C;tss_id=TSS20;nbOverlaps=0;ID=YNL003C;Name=PET8
IV	S-MART	transcript	1492477	1493026	.	-	.	seqedit=false;gene_id=snR84;tss_id=TSS1597;nbOverlaps=0;ID=snR84;Name=SNR84
XIV	S-MART	transcript	622915	624621	.	+	.	seqedit=false;p_id=P5098;gene_id=YNL004W;tss_id=TSS3091;nbOverlaps=0;ID=YNL004W;Name=HRB1
XIV	S-MART	exon	622915	622944	.	+	.	ID=YNL004W-exon1;Name=HRB1-exon1;Parent=YNL004W
XIV	S-MART	exon	623287	624621	.	+	.	ID=YNL004W-exon2;Name=HRB1-exon2;Parent=YNL004W
XIII	S-MART	transcript	684467	685798	.	+	.	seqedit=false;p_id=P4387;gene_id=YMR208W;tss_id=TSS7054;nbOverlaps=0;ID=YMR208W;Name=ERG12
V	S-MART	transcript	499347	500348	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:2:2780:14987#0--HWUSI-EAS1656_0009_FC:3:3:1682:16109#0--HWUSI-EAS1656_0009_F;p_id=P4542;gene_id=YER161C;tss_id=TSS3335;nbOverlaps=70;ID=YER161C;Name=SPT2
V	S-MART	transcript	492856	498124	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P2268;gene_id=YER160C;tss_id=TSS5267;nbOverlaps=537;ID=YER160C;Name=YER160C
V	S-MART	exon	492856	496821	.	-	.	ID=YER160C-exon1;Name=YER160C-exon1;Parent=YER160C
V	S-MART	exon	496823	498124	.	-	.	ID=YER160C-exon2;Name=YER160C-exon2;Parent=YER160C
XIV	S-MART	transcript	621313	622428	.	-	.	seqedit=false;p_id=P3979;gene_id=YNL005C;tss_id=TSS6699;nbOverlaps=0;ID=YNL005C;Name=MRP7
VIII	S-MART	transcript	92627	94510	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:14176:15645#0--HWUSI-EAS1656_0009_FC:3:99:11825:16071#0--HWUSI-EAS1656_00;p_id=P6126;gene_id=YHL008C;tss_id=TSS75;nbOverlaps=86;ID=YHL008C;Name=YHL008C
XIV	S-MART	transcript	620067	620978	.	+	.	seqedit=false;p_id=P3843;gene_id=YNL006W;tss_id=TSS6620;nbOverlaps=0;ID=YNL006W;Name=LST8
XIV	S-MART	transcript	618507	619565	.	-	.	seqedit=false;p_id=P6381;gene_id=YNL007C;tss_id=TSS827;nbOverlaps=0;ID=YNL007C;Name=SIS1
XIII	S-MART	transcript	67768	67938	.	-	.	seqedit=false;gene_id=snR85;tss_id=TSS4587;nbOverlaps=0;ID=snR85;Name=SNR85
XIV	S-MART	transcript	181361	182608	.	-	.	seqedit=false;p_id=P2999;gene_id=YNL248C;tss_id=TSS5443;nbOverlaps=0;ID=YNL248C;Name=RPA49
XIV	S-MART	transcript	616211	618241	.	-	.	seqedit=false;p_id=P167;gene_id=YNL008C;tss_id=TSS2447;nbOverlaps=0;ID=YNL008C;Name=ASI3
XIV	S-MART	transcript	614821	616083	.	+	.	seqedit=false;p_id=P1134;gene_id=YNL009W;tss_id=TSS5513;nbOverlaps=0;ID=YNL009W;Name=IDP3
XIV	S-MART	transcript	609686	611665	.	+	.	seqedit=false;p_id=P4937;gene_id=YNL012W;tss_id=TSS3104;nbOverlaps=0;ID=YNL012W;Name=SPO1
XIV	S-MART	exon	609686	609790	.	+	.	ID=YNL012W-exon1;Name=SPO1-exon1;Parent=YNL012W
XIV	S-MART	exon	609875	611665	.	+	.	ID=YNL012W-exon2;Name=SPO1-exon2;Parent=YNL012W
XIV	S-MART	transcript	613635	614360	.	+	.	seqedit=false;p_id=P2775;gene_id=YNL010W;tss_id=TSS1565;nbOverlaps=0;ID=YNL010W;Name=YNL010W
VIII	S-MART	transcript	85909	87150	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:14818:2800#0--HWUSI-EAS1656_0009_FC:3:18:13081:11103#0--HWUSI-EAS1656_000;p_id=P1994;gene_id=YHL009W-A;tss_id=TSS6151;nbOverlaps=16;ID=YHL009W-A;Name=YHL009W-A
XIV	S-MART	transcript	611836	613170	.	-	.	seqedit=false;p_id=P6062;gene_id=YNL011C;tss_id=TSS498;nbOverlaps=0;ID=YNL011C;Name=YNL011C
V	S-MART	transcript	518216	520771	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:5964:8930#0--HWUSI-EAS1656_0009_FC:3:52:14543:20683#0--HWUSI-EAS1656_000;p_id=P1433;gene_id=YER167W;tss_id=TSS483;nbOverlaps=362;ID=YER167W;Name=BCK2
XIII	S-MART	transcript	762110	763113	.	-	.	seqedit=false;gene_id=snR86;tss_id=TSS1460;nbOverlaps=0;ID=snR86;Name=SNR86
V	S-MART	transcript	521029	522669	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:2:3987:9173#0--HWUSI-EAS1656_0009_FC:3:49:13105:21248#0--HWUSI-EAS1656_0009_;p_id=P4632;gene_id=YER168C;tss_id=TSS1576;nbOverlaps=254;ID=YER168C;Name=CCA1
XIV	S-MART	transcript	606319	609453	.	+	.	seqedit=false;p_id=P4820;gene_id=YNL014W;tss_id=TSS5624;nbOverlaps=0;ID=YNL014W;Name=HEF3
V	S-MART	transcript	525974	526651	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:55:18081:7948#0--HWUSI-EAS1656_0009_FC:3:55:7139:7786#0--HWUSI-EAS1656_0009_;p_id=P4659;gene_id=YER170W;tss_id=TSS6988;nbOverlaps=58;ID=YER170W;Name=ADK2
XIV	S-MART	transcript	605384	605611	.	+	.	seqedit=false;p_id=P3185;gene_id=YNL015W;tss_id=TSS3994;nbOverlaps=0;ID=YNL015W;Name=PBI2
XIII	S-MART	transcript	478301	480190	.	-	.	seqedit=false;p_id=P3274;gene_id=YMR106C;tss_id=TSS1721;nbOverlaps=0;ID=YMR106C;Name=YKU80
XIV	S-MART	transcript	602907	604268	.	+	.	seqedit=false;p_id=P4760;gene_id=YNL016W;tss_id=TSS6169;nbOverlaps=0;ID=YNL016W;Name=PUB1
XIV	S-MART	transcript	595623	597539	.	-	.	seqedit=false;p_id=P2620;gene_id=YNL020C;tss_id=TSS629;nbOverlaps=0;ID=YNL020C;Name=ARK1
XI	S-MART	transcript	431030	431138	.	-	.	seqedit=false;gene_id=snR87;tss_id=TSS2678;nbOverlaps=0;ID=snR87;Name=SNR87
V	S-MART	transcript	536300	538279	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:18751:19999#0--HWUSI-EAS1656_0009_FC:3:75:9725:11148#0--HWUSI-EAS1656_000;p_id=P2413;gene_id=YER173W;tss_id=TSS340;nbOverlaps=82;ID=YER173W;Name=RAD24
XIV	S-MART	transcript	599936	601774	.	-	.	seqedit=false;p_id=P3868;gene_id=YNL018C;tss_id=TSS7036;nbOverlaps=0;ID=YNL018C;Name=YNL018C
XIV	S-MART	transcript	598376	599230	.	-	.	seqedit=false;p_id=P1756;gene_id=YNL019C;tss_id=TSS5845;nbOverlaps=0;ID=YNL019C;Name=YNL019C
XIV	S-MART	transcript	593227	595347	.	+	.	seqedit=false;p_id=P5438;gene_id=YNL021W;tss_id=TSS4617;nbOverlaps=0;ID=YNL021W;Name=HDA1
XIV	S-MART	transcript	588263	591160	.	-	.	seqedit=false;p_id=P6177;gene_id=YNL023C;tss_id=TSS2174;nbOverlaps=0;ID=YNL023C;Name=FAP1
XIV	S-MART	transcript	591427	592899	.	-	.	seqedit=false;p_id=P4372;gene_id=YNL022C;tss_id=TSS5464;nbOverlaps=0;ID=YNL022C;Name=YNL022C
XV	S-MART	transcript	407948	408134	.	-	.	seqedit=false;gene_id=snR9;tss_id=TSS1411;nbOverlaps=0;ID=snR9;Name=SNR9
XIV	S-MART	transcript	586602	586820	.	-	.	seqedit=false;p_id=P5639;gene_id=YNL024C-A;tss_id=TSS6423;nbOverlaps=0;ID=YNL024C-A;Name=KSH1
XIV	S-MART	transcript	587107	587847	.	-	.	seqedit=false;p_id=P1211;gene_id=YNL024C;tss_id=TSS5286;nbOverlaps=0;ID=YNL024C;Name=YNL024C
XIV	S-MART	transcript	584320	585291	.	-	.	seqedit=false;p_id=P48;gene_id=YNL025C;tss_id=TSS7040;nbOverlaps=0;ID=YNL025C;Name=SSN8
XIV	S-MART	transcript	581920	583374	.	+	.	seqedit=false;p_id=P6307;gene_id=YNL026W;tss_id=TSS6734;nbOverlaps=0;ID=YNL026W;Name=SAM50
XIV	S-MART	transcript	579580	581616	.	+	.	seqedit=false;p_id=P5838;gene_id=YNL027W;tss_id=TSS3402;nbOverlaps=0;ID=YNL027W;Name=CRZ1
XIV	S-MART	transcript	577205	578773	.	-	.	seqedit=false;p_id=P1762;gene_id=YNL029C;tss_id=TSS452;nbOverlaps=0;ID=YNL029C;Name=KTR5
XI	S-MART	transcript	219895	219967	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:8605:7936#0--HWUSI-EAS1656_0009_FC:3:87:4416:18600#0--HWUSI-EAS1656_0009_;gene_id=tA(AGC)K1;tss_id=TSS2460;nbOverlaps=23;ID=tA(AGC)K1;Name=tA(AGC)K1
XIV	S-MART	transcript	578679	578996	.	+	.	seqedit=false;p_id=P5380;gene_id=YNL028W;tss_id=TSS349;nbOverlaps=0;ID=YNL028W;Name=YNL028W
XIII	S-MART	transcript	689083	690510	.	+	.	seqedit=false;p_id=P935;gene_id=YMR211W;tss_id=TSS1699;nbOverlaps=0;ID=YMR211W;Name=DML1
XIV	S-MART	transcript	576727	577038	.	+	.	seqedit=false;p_id=P2903;gene_id=YNL030W;tss_id=TSS3926;nbOverlaps=0;ID=YNL030W;Name=HHF2
XIV	S-MART	transcript	575640	576050	.	-	.	seqedit=false;p_id=P4067;gene_id=YNL031C;tss_id=TSS1466;nbOverlaps=0;ID=YNL031C;Name=HHT2
XIV	S-MART	transcript	574506	575351	.	+	.	seqedit=false;p_id=P6514;gene_id=YNL032W;tss_id=TSS6903;nbOverlaps=0;ID=YNL032W;Name=SIW14
VIII	S-MART	transcript	81964	83721	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:81:2472:3768#0--HWUSI-EAS1656_0009_FC:3:18:2131:21340#0--HWUSI-EAS1656_0009_;p_id=P1338;gene_id=YHL010C;tss_id=TSS5878;nbOverlaps=50;ID=YHL010C;Name=ETP1
XIV	S-MART	transcript	559814	560479	.	+	.	seqedit=false;p_id=P1191;gene_id=YNL036W;tss_id=TSS2594;nbOverlaps=0;ID=YNL036W;Name=NCE103
XIV	S-MART	transcript	572999	573853	.	+	.	seqedit=false;p_id=P6475;gene_id=YNL033W;tss_id=TSS3992;nbOverlaps=0;ID=YNL033W;Name=YNL033W
IV	S-MART	transcript	410379	410451	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)D;tss_id=TSS3356;nbOverlaps=7;ID=tA(AGC)D;Name=tA(AGC)D
XIV	S-MART	transcript	182875	185178	.	+	.	seqedit=false;p_id=P4425;gene_id=YNL247W;tss_id=TSS6145;nbOverlaps=0;ID=YNL247W;Name=YNL247W
XIV	S-MART	transcript	570477	572315	.	+	.	seqedit=false;p_id=P3369;gene_id=YNL034W;tss_id=TSS230;nbOverlaps=0;ID=YNL034W;Name=YNL034W
XIV	S-MART	transcript	568522	569691	.	-	.	seqedit=false;p_id=P1221;gene_id=YNL035C;tss_id=TSS1957;nbOverlaps=0;ID=YNL035C;Name=YNL035C
XIV	S-MART	transcript	557920	559002	.	-	.	seqedit=false;p_id=P4028;gene_id=YNL037C;tss_id=TSS6359;nbOverlaps=0;ID=YNL037C;Name=IDH1
XIV	S-MART	transcript	692561	692857	.	+	.	seqedit=false;p_id=P675;gene_id=YNR034W-A;tss_id=TSS6867;nbOverlaps=0;ID=YNR034W-A;Name=YNR034W-A
XIV	S-MART	transcript	557020	557783	.	+	.	seqedit=false;p_id=P4522;gene_id=YNL038W;tss_id=TSS3467;nbOverlaps=0;ID=YNL038W;Name=GPI15
XIV	S-MART	exon	557020	557610	.	+	.	ID=YNL038W-exon1;Name=GPI15-exon1;Parent=YNL038W
XIV	S-MART	exon	557685	557783	.	+	.	ID=YNL038W-exon2;Name=GPI15-exon2;Parent=YNL038W
VIII	S-MART	transcript	80654	81616	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:64:9020:10640#0--HWUSI-EAS1656_0009_FC:3:43:3861:12968#0--HWUSI-EAS1656_0009;p_id=P722;gene_id=YHL011C;tss_id=TSS4166;nbOverlaps=1419;ID=YHL011C;Name=PRS3
V	S-MART	transcript	571155	571523	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:1482:14832#0--HWUSI-EAS1656_0009_FC:3:18:14365:8377#0--HWUSI-EAS1656_0009;p_id=P3514;gene_id=YER189W;tss_id=TSS2237;nbOverlaps=44;ID=YER189W;Name=YER189W
V	S-MART	transcript	575680	576162	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:8694:17363#0--HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_;p_id=P3292;gene_id=YER190C-B;tss_id=TSS2117;nbOverlaps=76;ID=YER190C-B;Name=YER190C-B
VI	S-MART	transcript	204924	204996	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)F;tss_id=TSS188;nbOverlaps=6;ID=tA(AGC)F;Name=tA(AGC)F
XIV	S-MART	transcript	555048	556832	.	+	.	seqedit=false;p_id=P5204;gene_id=YNL039W;tss_id=TSS490;nbOverlaps=0;ID=YNL039W;Name=BDP1
XIV	S-MART	transcript	549468	551987	.	-	.	seqedit=false;p_id=P1193;gene_id=YNL041C;tss_id=TSS5642;nbOverlaps=0;ID=YNL041C;Name=COG6
XIV	S-MART	transcript	553380	554750	.	+	.	seqedit=false;p_id=P6332;gene_id=YNL040W;tss_id=TSS4208;nbOverlaps=0;ID=YNL040W;Name=YNL040W
XIV	S-MART	transcript	548100	549290	.	+	.	seqedit=false;p_id=P5499;gene_id=YNL042W;tss_id=TSS668;nbOverlaps=0;ID=YNL042W;Name=BOP3
VIII	S-MART	transcript	77430	78353	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:7592:12970#0--HWUSI-EAS1656_0009_FC:3:89:5394:9743#0--HWUSI-EAS1656_0009_;p_id=P4874;gene_id=YHL013C;tss_id=TSS6491;nbOverlaps=53;ID=YHL013C;Name=OTU2
XIV	S-MART	transcript	547113	547370	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;p_id=P6139;gene_id=YNL042W-B;tss_id=TSS720;nbOverlaps=2725;ID=YNL042W-B;Name=YNL042W-B
XVI	S-MART	transcript	425251	425847	.	-	.	seqedit=false;p_id=P318;gene_id=YPL067C;tss_id=TSS3395;nbOverlaps=0;ID=YPL067C;Name=YPL067C
XIV	S-MART	transcript	545268	545877	.	+	.	seqedit=false;p_id=P4589;gene_id=YNL044W;tss_id=TSS2971;nbOverlaps=0;ID=YNL044W;Name=YIP3
XIV	S-MART	exon	545268	545291	.	+	.	ID=YNL044W-exon1;Name=YIP3-exon1;Parent=YNL044W
XIV	S-MART	exon	545371	545877	.	+	.	ID=YNL044W-exon2;Name=YIP3-exon2;Parent=YNL044W
VII	S-MART	transcript	774349	774421	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)G;tss_id=TSS2898;nbOverlaps=7;ID=tA(AGC)G;Name=tA(AGC)G
XIV	S-MART	transcript	545589	545909	.	-	.	seqedit=false;p_id=P1246;gene_id=YNL043C;tss_id=TSS2102;nbOverlaps=0;ID=YNL043C;Name=YNL043C
VI	S-MART	transcript	134521	137157	.	-	.	seqedit=false;p_id=P5647;gene_id=YFL003C;tss_id=TSS5810;nbOverlaps=0;ID=YFL003C;Name=MSH4
XVI	S-MART	transcript	183597	184679	.	-	.	seqedit=false;p_id=P3188;gene_id=YPL191C;tss_id=TSS1616;nbOverlaps=0;ID=YPL191C;Name=YPL191C
VI	S-MART	transcript	131810	134296	.	+	.	seqedit=false;p_id=P1747;gene_id=YFL004W;tss_id=TSS4860;nbOverlaps=0;ID=YFL004W;Name=VTC2
XIV	S-MART	transcript	542963	544978	.	+	.	seqedit=false;p_id=P2011;gene_id=YNL045W;tss_id=TSS1143;nbOverlaps=0;ID=YNL045W;Name=LAP2
VIII	S-MART	transcript	78936	80417	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:13:18079:6958#0--HWUSI-EAS1656_0009_FC:3:28:9708:19028#0--HWUSI-EAS1656_0009;p_id=P2177;gene_id=YHL012W;tss_id=TSS1408;nbOverlaps=37;ID=YHL012W;Name=YHL012W
XI	S-MART	transcript	153269	153706	.	+	.	seqedit=false;p_id=P4498;gene_id=YKL160W;tss_id=TSS4029;nbOverlaps=0;ID=YKL160W;Name=ELF1
XIV	S-MART	transcript	539911	541881	.	-	.	seqedit=false;p_id=P3086;gene_id=YNL047C;tss_id=TSS1386;nbOverlaps=0;ID=YNL047C;Name=SLM2
XIV	S-MART	transcript	542304	542822	.	+	.	seqedit=false;p_id=P2422;gene_id=YNL046W;tss_id=TSS3730;nbOverlaps=0;ID=YNL046W;Name=YNL046W
VIII	S-MART	transcript	146242	146314	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:8605:7936#0--HWUSI-EAS1656_0009_FC:3:87:4416:18600#0--HWUSI-EAS1656_0009_;gene_id=tA(AGC)H;tss_id=TSS694;nbOverlaps=36;ID=tA(AGC)H;Name=tA(AGC)H
XIV	S-MART	transcript	538173	539819	.	+	.	seqedit=false;p_id=P3659;gene_id=YNL048W;tss_id=TSS197;nbOverlaps=0;ID=YNL048W;Name=ALG11
XIV	S-MART	transcript	535281	537911	.	-	.	seqedit=false;p_id=P1083;gene_id=YNL049C;tss_id=TSS375;nbOverlaps=0;ID=YNL049C;Name=SFB2
VI	S-MART	transcript	114990	115274	.	+	.	seqedit=false;p_id=P2646;gene_id=YFL010W-A;tss_id=TSS2172;nbOverlaps=0;ID=YFL010W-A;Name=AUA1
XIV	S-MART	transcript	534079	534982	.	-	.	seqedit=false;p_id=P3305;gene_id=YNL050C;tss_id=TSS4799;nbOverlaps=0;ID=YNL050C;Name=YNL050C
XIV	S-MART	exon	534079	534874	.	-	.	ID=YNL050C-exon1;Name=YNL050C-exon1;Parent=YNL050C
XIV	S-MART	exon	534966	534982	.	-	.	ID=YNL050C-exon2;Name=YNL050C-exon2;Parent=YNL050C
VIII	S-MART	transcript	76097	77314	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:17817:13423#0--HWUSI-EAS1656_0009_FC:3:4:7381:3664#0--HWUSI-EAS1656_0009;p_id=P6125;gene_id=YHL014C;tss_id=TSS6874;nbOverlaps=64;ID=YHL014C;Name=YLF2
X	S-MART	transcript	197313	197385	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_0009_FC:3:39:13854:9802#0--HWUSI-EAS1656_0009;gene_id=tA(AGC)J;tss_id=TSS4203;nbOverlaps=17;ID=tA(AGC)J;Name=tA(AGC)J
XII	S-MART	transcript	875376	875471	.	+	.	seqedit=false;gene_id=tK(UUU)L;tss_id=TSS2073;nbOverlaps=0;ID=tK(UUU)L;Name=tK(UUU)L
XII	S-MART	exon	875376	875412	.	+	.	ID=tK(UUU)L-exon1;Name=tK(UUU)L-exon1;Parent=tK(UUU)L
XII	S-MART	exon	875436	875471	.	+	.	ID=tK(UUU)L-exon2;Name=tK(UUU)L-exon2;Parent=tK(UUU)L
XIII	S-MART	transcript	685911	687284	.	-	.	seqedit=false;p_id=P1711;gene_id=YMR209C;tss_id=TSS1071;nbOverlaps=0;ID=YMR209C;Name=YMR209C
XV	S-MART	transcript	438643	438738	.	+	.	seqedit=false;gene_id=tK(UUU)O;tss_id=TSS904;nbOverlaps=0;ID=tK(UUU)O;Name=tK(UUU)O
XV	S-MART	exon	438643	438679	.	+	.	ID=tK(UUU)O-exon1;Name=tK(UUU)O-exon1;Parent=tK(UUU)O
XV	S-MART	exon	438703	438738	.	+	.	ID=tK(UUU)O-exon2;Name=tK(UUU)O-exon2;Parent=tK(UUU)O
VIII	S-MART	transcript	75412	75777	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:3424:18530#0--HWUSI-EAS1656_0009_FC:3:58:5572:20127#0--HWUSI-EAS1656_0009;p_id=P5679;gene_id=YHL015W;tss_id=TSS3572;nbOverlaps=7358;ID=YHL015W;Name=RPS20
XVI	S-MART	transcript	886524	887837	.	-	.	seqedit=false;p_id=P2521;gene_id=YPR173C;tss_id=TSS1114;nbOverlaps=0;ID=YPR173C;Name=VPS4
XI	S-MART	transcript	517988	518060	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)K2;tss_id=TSS1707;nbOverlaps=6;ID=tA(AGC)K2;Name=tA(AGC)K2
XVI	S-MART	transcript	769207	769302	.	-	.	seqedit=false;gene_id=tK(UUU)P;tss_id=TSS1224;nbOverlaps=0;ID=tK(UUU)P;Name=tK(UUU)P
XVI	S-MART	exon	769207	769242	.	-	.	ID=tK(UUU)P-exon1;Name=tK(UUU)P-exon1;Parent=tK(UUU)P
XVI	S-MART	exon	769266	769302	.	-	.	ID=tK(UUU)P-exon2;Name=tK(UUU)P-exon2;Parent=tK(UUU)P
XIV	S-MART	transcript	693019	694047	.	-	.	seqedit=false;p_id=P3099;gene_id=YNR035C;tss_id=TSS4261;nbOverlaps=0;ID=YNR035C;Name=ARC35
Mito	S-MART	transcript	67061	67134	.	+	.	seqedit=false;gene_id=tK(UUU)Q;tss_id=TSS998;nbOverlaps=0;ID=tK(UUU)Q;Name=tK(UUU)Q
VIII	S-MART	transcript	74699	74782	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:10037:17841#0--HWUSI-EAS1656_0009_FC:3:119:3084:12806#0--HWUSI-EAS1656_00;p_id=P5116;gene_id=YHL015W-A;tss_id=TSS2292;nbOverlaps=7;ID=YHL015W-A;Name=YHL015W-A
III	S-MART	transcript	96281	101191	.	+	.	seqedit=false;p_id=P5626;gene_id=YCL014W;tss_id=TSS5094;nbOverlaps=0;ID=YCL014W;Name=BUD3
XIII	S-MART	transcript	321147	321219	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)M1;tss_id=TSS3583;nbOverlaps=6;ID=tA(AGC)M1;Name=tA(AGC)M1
III	S-MART	transcript	90859	90972	.	+	.	seqedit=false;gene_id=tL(CAA)C;tss_id=TSS6757;nbOverlaps=0;ID=tL(CAA)C;Name=SUP53
III	S-MART	exon	90859	90896	.	+	.	ID=tL(CAA)C-exon1;Name=SUP53-exon1;Parent=tL(CAA)C
III	S-MART	exon	90929	90972	.	+	.	ID=tL(CAA)C-exon2;Name=SUP53-exon2;Parent=tL(CAA)C
VII	S-MART	transcript	205521	205634	.	+	.	seqedit=false;gene_id=tL(CAA)G1;tss_id=TSS6550;nbOverlaps=0;ID=tL(CAA)G1;Name=tL(CAA)G1
VII	S-MART	exon	205521	205558	.	+	.	ID=tL(CAA)G1-exon1;Name=tL(CAA)G1-exon1;Parent=tL(CAA)G1
VII	S-MART	exon	205591	205634	.	+	.	ID=tL(CAA)G1-exon2;Name=tL(CAA)G1-exon2;Parent=tL(CAA)G1
VIII	S-MART	transcript	72037	74244	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:13472:20349#0--HWUSI-EAS1656_0009_FC:3:76:4488:12268#0--HWUSI-EAS1656_000;p_id=P656;gene_id=YHL016C;tss_id=TSS5591;nbOverlaps=36;ID=YHL016C;Name=DUR3
IV	S-MART	transcript	1461715	1461829	.	-	.	seqedit=false;gene_id=tL(CAA)D;tss_id=TSS5438;nbOverlaps=0;ID=tL(CAA)D;Name=tL(CAA)D
IV	S-MART	exon	1461715	1461758	.	-	.	ID=tL(CAA)D-exon1;Name=tL(CAA)D-exon1;Parent=tL(CAA)D
IV	S-MART	exon	1461792	1461829	.	-	.	ID=tL(CAA)D-exon2;Name=tL(CAA)D-exon2;Parent=tL(CAA)D
XVI	S-MART	transcript	424215	425096	.	-	.	seqedit=false;p_id=P1445;gene_id=YPL068C;tss_id=TSS1204;nbOverlaps=0;ID=YPL068C;Name=YPL068C
XII	S-MART	transcript	656934	657006	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:80:7747:11139#0--HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_000;gene_id=tA(AGC)L;tss_id=TSS6101;nbOverlaps=8;ID=tA(AGC)L;Name=tA(AGC)L
XVI	S-MART	transcript	181403	182548	.	+	.	seqedit=false;p_id=P5117;gene_id=YPL193W;tss_id=TSS3590;nbOverlaps=0;ID=YPL193W;Name=RSA1
VII	S-MART	transcript	423092	423205	.	+	.	seqedit=false;gene_id=tL(CAA)G2;tss_id=TSS6153;nbOverlaps=0;ID=tL(CAA)G2;Name=SUP54
VII	S-MART	exon	423092	423129	.	+	.	ID=tL(CAA)G2-exon1;Name=SUP54-exon1;Parent=tL(CAA)G2
VII	S-MART	exon	423162	423205	.	+	.	ID=tL(CAA)G2-exon2;Name=SUP54-exon2;Parent=tL(CAA)G2
XV	S-MART	transcript	674352	675167	.	-	.	seqedit=false;p_id=P564;gene_id=YOR180C;tss_id=TSS3835;nbOverlaps=0;ID=YOR180C;Name=DCI1
XIII	S-MART	transcript	768369	768441	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)M2;tss_id=TSS6690;nbOverlaps=7;ID=tA(AGC)M2;Name=tA(AGC)M2
VII	S-MART	transcript	857378	857491	.	-	.	seqedit=false;gene_id=tL(CAA)G3;tss_id=TSS4334;nbOverlaps=0;ID=tL(CAA)G3;Name=tL(CAA)G3
VII	S-MART	exon	857378	857421	.	-	.	ID=tL(CAA)G3-exon1;Name=tL(CAA)G3-exon1;Parent=tL(CAA)G3
VII	S-MART	exon	857454	857491	.	-	.	ID=tL(CAA)G3-exon2;Name=tL(CAA)G3-exon2;Parent=tL(CAA)G3
II	S-MART	transcript	9583	9666	.	+	.	seqedit=false;gene_id=tL(UAA)B1;tss_id=TSS2135;nbOverlaps=0;ID=tL(UAA)B1;Name=tL(UAA)B1
XV	S-MART	transcript	675939	677840	.	+	.	seqedit=false;p_id=P3076;gene_id=YOR181W;tss_id=TSS1575;nbOverlaps=0;ID=YOR181W;Name=LAS17
XI	S-MART	transcript	458557	458670	.	+	.	seqedit=false;gene_id=tL(CAA)K;tss_id=TSS776;nbOverlaps=0;ID=tL(CAA)K;Name=tL(CAA)K
XI	S-MART	exon	458557	458594	.	+	.	ID=tL(CAA)K-exon1;Name=tL(CAA)K-exon1;Parent=tL(CAA)K
XI	S-MART	exon	458627	458670	.	+	.	ID=tL(CAA)K-exon2;Name=tL(CAA)K-exon2;Parent=tL(CAA)K
XVI	S-MART	transcript	435893	435964	.	-	.	seqedit=false;gene_id=tC(GCA)P1;tss_id=TSS5462;nbOverlaps=0;ID=tC(GCA)P1;Name=tC(GCA)P1
XIII	S-MART	transcript	687516	688865	.	+	.	seqedit=false;p_id=P1940;gene_id=YMR210W;tss_id=TSS4027;nbOverlaps=0;ID=YMR210W;Name=YMR210W
XII	S-MART	transcript	628383	628497	.	+	.	seqedit=false;gene_id=tL(CAA)L;tss_id=TSS4894;nbOverlaps=0;ID=tL(CAA)L;Name=tL(CAA)L
XII	S-MART	exon	628383	628420	.	+	.	ID=tL(CAA)L-exon1;Name=tL(CAA)L-exon1;Parent=tL(CAA)L
XII	S-MART	exon	628454	628497	.	+	.	ID=tL(CAA)L-exon2;Name=tL(CAA)L-exon2;Parent=tL(CAA)L
VIII	S-MART	transcript	69708	70070	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:39:13302:17516#0--HWUSI-EAS1656_0009_FC:3:59:4455:9849#0--HWUSI-EAS1656_0009;p_id=P4580;gene_id=YHL018W;tss_id=TSS2870;nbOverlaps=30;ID=YHL018W;Name=YHL018W
XIII	S-MART	transcript	504895	505008	.	+	.	seqedit=false;gene_id=tL(CAA)M;tss_id=TSS4019;nbOverlaps=0;ID=tL(CAA)M;Name=tL(CAA)M
XIII	S-MART	exon	504895	504932	.	+	.	ID=tL(CAA)M-exon1;Name=tL(CAA)M-exon1;Parent=tL(CAA)M
XIII	S-MART	exon	504965	505008	.	+	.	ID=tL(CAA)M-exon2;Name=tL(CAA)M-exon2;Parent=tL(CAA)M
II	S-MART	transcript	426333	427058	.	-	.	seqedit=false;p_id=P3622;gene_id=YBR090C;tss_id=TSS4436;nbOverlaps=0;ID=YBR090C;Name=YBR090C
II	S-MART	exon	426333	426516	.	-	.	ID=YBR090C-exon1;Name=YBR090C-exon1;Parent=YBR090C
II	S-MART	exon	426874	427058	.	-	.	ID=YBR090C-exon2;Name=YBR090C-exon2;Parent=YBR090C
XVI	S-MART	transcript	856902	856974	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:1496:16635#0--HWUSI-EAS1656_0009_FC:3:76:1761:13716#0--HWUSI-EAS1656_000;gene_id=tA(AGC)P;tss_id=TSS2156;nbOverlaps=6;ID=tA(AGC)P;Name=tA(AGC)P
XIV	S-MART	transcript	175410	179348	.	+	.	seqedit=false;p_id=P3014;gene_id=YNL250W;tss_id=TSS6368;nbOverlaps=0;ID=YNL250W;Name=RAD50
XIV	S-MART	transcript	443006	443119	.	+	.	seqedit=false;gene_id=tL(CAA)N;tss_id=TSS5959;nbOverlaps=0;ID=tL(CAA)N;Name=tL(CAA)N
XIV	S-MART	exon	443006	443043	.	+	.	ID=tL(CAA)N-exon1;Name=tL(CAA)N-exon1;Parent=tL(CAA)N
XIV	S-MART	exon	443076	443119	.	+	.	ID=tL(CAA)N-exon2;Name=tL(CAA)N-exon2;Parent=tL(CAA)N
XIV	S-MART	transcript	694361	694822	.	-	.	seqedit=false;p_id=P5954;gene_id=YNR036C;tss_id=TSS6023;nbOverlaps=0;ID=YNR036C;Name=MRPS12
VIII	S-MART	transcript	67711	68304	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:78:6851:5661#0--HWUSI-EAS1656_0009_FC:3:16:11154:6110#0--HWUSI-EAS1656_0009_;p_id=P2892;gene_id=YHL019W-A;tss_id=TSS1416;nbOverlaps=49;ID=YHL019W-A;Name=YHL019W-A
VII	S-MART	transcript	700675	700756	.	+	.	seqedit=false;gene_id=tL(GAG)G;tss_id=TSS2915;nbOverlaps=0;ID=tL(GAG)G;Name=tL(GAG)G
III	S-MART	transcript	101317	101788	.	-	.	seqedit=false;p_id=P1164;gene_id=YCL012C;tss_id=TSS5136;nbOverlaps=0;ID=YCL012C;Name=YCL012C
III	S-MART	exon	101317	101633	.	-	.	ID=YCL012C-exon1;Name=YCL012C-exon1;Parent=YCL012C
III	S-MART	exon	101701	101788	.	-	.	ID=YCL012C-exon2;Name=YCL012C-exon2;Parent=YCL012C
I	S-MART	transcript	166267	166339	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:14786:6189#0--HWUSI-EAS1656_0009_FC:3:8:11514:18422#0--HWUSI-EAS1656_0009;gene_id=tA(UGC)A;tss_id=TSS3162;nbOverlaps=266;ID=tA(UGC)A;Name=tA(UGC)A
X	S-MART	transcript	424432	424515	.	-	.	seqedit=false;gene_id=tL(UAA)J;tss_id=TSS5821;nbOverlaps=0;ID=tL(UAA)J;Name=SUP51
IV	S-MART	transcript	519743	519826	.	+	.	seqedit=false;gene_id=tL(UAA)D;tss_id=TSS2390;nbOverlaps=0;ID=tL(UAA)D;Name=tL(UAA)D
XII	S-MART	transcript	592519	592619	.	-	.	seqedit=false;gene_id=tL(UAG)L1;tss_id=TSS4119;nbOverlaps=0;ID=tL(UAG)L1;Name=tL(UAG)L1
XII	S-MART	exon	592519	592562	.	-	.	ID=tL(UAG)L1-exon1;Name=tL(UAG)L1-exon1;Parent=tL(UAG)L1
XII	S-MART	exon	592582	592619	.	-	.	ID=tL(UAG)L1-exon2;Name=tL(UAG)L1-exon2;Parent=tL(UAG)L1
XI	S-MART	transcript	84208	84291	.	+	.	seqedit=false;gene_id=tL(UAA)K;tss_id=TSS7029;nbOverlaps=0;ID=tL(UAA)K;Name=tL(UAA)K
XIII	S-MART	transcript	502144	502734	.	-	.	seqedit=false;p_id=P5568;gene_id=YMR118C;tss_id=TSS2465;nbOverlaps=0;ID=YMR118C;Name=YMR118C
XII	S-MART	transcript	962972	963055	.	-	.	seqedit=false;gene_id=tL(UAA)L;tss_id=TSS1920;nbOverlaps=0;ID=tL(UAA)L;Name=tL(UAA)L
XVI	S-MART	transcript	420948	422786	.	+	.	seqedit=false;p_id=P1301;gene_id=YPL070W;tss_id=TSS2566;nbOverlaps=0;ID=YPL070W;Name=MUK1
XIV	S-MART	transcript	726134	726217	.	-	.	seqedit=false;gene_id=tL(UAA)N;tss_id=TSS6116;nbOverlaps=0;ID=tL(UAA)N;Name=tL(UAA)N
V	S-MART	transcript	312023	312095	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:14786:6189#0--HWUSI-EAS1656_0009_FC:3:8:11514:18422#0--HWUSI-EAS1656_0009;gene_id=tA(UGC)E;tss_id=TSS6079;nbOverlaps=295;ID=tA(UGC)E;Name=tA(UGC)E
Mito	S-MART	transcript	66095	66179	.	+	.	seqedit=false;gene_id=tL(UAA)Q;tss_id=TSS4782;nbOverlaps=0;ID=tL(UAA)Q;Name=tL(UAA)Q
X	S-MART	transcript	617919	618019	.	+	.	seqedit=false;gene_id=tL(UAG)J;tss_id=TSS2469;nbOverlaps=0;ID=tL(UAG)J;Name=tL(UAG)J
X	S-MART	exon	617919	617956	.	+	.	ID=tL(UAG)J-exon1;Name=tL(UAG)J-exon1;Parent=tL(UAG)J
X	S-MART	exon	617976	618019	.	+	.	ID=tL(UAG)J-exon2;Name=tL(UAG)J-exon2;Parent=tL(UAG)J
XVI	S-MART	transcript	179277	181115	.	+	.	seqedit=false;p_id=P5473;gene_id=YPL194W;tss_id=TSS673;nbOverlaps=0;ID=YPL194W;Name=DDC1
VIII	S-MART	transcript	151217	151306	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:53:15081:5743#0--HWUSI-EAS1656_0009_FC:3:114:10762:8834#0--HWUSI-EAS1656_000;p_id=P3038;gene_id=YHR022C-A;tss_id=TSS1651;nbOverlaps=10;ID=YHR022C-A;Name=YHR022C-A
VIII	S-MART	transcript	64462	65859	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:91:11845:3918#0--HWUSI-EAS1656_0009_FC:3:1:19296:6305#0--HWUSI-EAS1656_0009_;p_id=P136;gene_id=YHL021C;tss_id=TSS1058;nbOverlaps=138;ID=YHL021C;Name=AIM17
VII	S-MART	transcript	794417	794489	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:14786:6189#0--HWUSI-EAS1656_0009_FC:3:8:11514:18422#0--HWUSI-EAS1656_0009;gene_id=tA(UGC)G;tss_id=TSS5400;nbOverlaps=261;ID=tA(UGC)G;Name=tA(UGC)G
XII	S-MART	transcript	732090	732190	.	+	.	seqedit=false;gene_id=tL(UAG)L2;tss_id=TSS6563;nbOverlaps=0;ID=tL(UAG)L2;Name=tL(UAG)L2
XII	S-MART	exon	732090	732127	.	+	.	ID=tL(UAG)L2-exon1;Name=tL(UAG)L2-exon1;Parent=tL(UAG)L2
XII	S-MART	exon	732147	732190	.	+	.	ID=tL(UAG)L2-exon2;Name=tL(UAG)L2-exon2;Parent=tL(UAG)L2
IV	S-MART	transcript	1175829	1175901	.	+	.	seqedit=false;gene_id=tM(CAU)D;tss_id=TSS2692;nbOverlaps=0;ID=tM(CAU)D;Name=EMT1
VIII	S-MART	transcript	62961	64157	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:1435:6578#0--HWUSI-EAS1656_0009_FC:3:1:6186:15079#0--HWUSI-EAS1656_0009_;p_id=P5410;gene_id=YHL022C;tss_id=TSS988;nbOverlaps=11;ID=YHL022C;Name=SPO11
III	S-MART	transcript	149920	149991	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:111:8822:19296#0--HWUSI-EAS1656_0009_FC:3:57:11579:18582#0--HWUSI-EAS1656_00;gene_id=tM(CAU)C;tss_id=TSS5895;nbOverlaps=5;ID=tM(CAU)C;Name=tM(CAU)C
V	S-MART	transcript	100133	100204	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:9421:15429#0--HWUSI-EAS1656_0009_FC:3:55:8096:3487#0--HWUSI-EAS1656_0009_;gene_id=tM(CAU)E;tss_id=TSS5406;nbOverlaps=26;ID=tM(CAU)E;Name=IMT4
XII	S-MART	transcript	214883	214955	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:14786:6189#0--HWUSI-EAS1656_0009_FC:3:8:11514:18422#0--HWUSI-EAS1656_0009;gene_id=tA(UGC)L;tss_id=TSS4989;nbOverlaps=263;ID=tA(UGC)L;Name=tA(UGC)L
X	S-MART	transcript	391043	391115	.	-	.	seqedit=false;gene_id=tM(CAU)J1;tss_id=TSS3034;nbOverlaps=0;ID=tM(CAU)J1;Name=EMT5
XIII	S-MART	transcript	690695	693043	.	-	.	seqedit=false;p_id=P715;gene_id=YMR212C;tss_id=TSS3683;nbOverlaps=0;ID=YMR212C;Name=EFR3
X	S-MART	transcript	422937	423009	.	+	.	seqedit=false;gene_id=tM(CAU)J2;tss_id=TSS4237;nbOverlaps=0;ID=tM(CAU)J2;Name=EMT3
IV	S-MART	transcript	687768	687884	.	+	.	seqedit=false;p_id=P725;gene_id=YDR118W-A;tss_id=TSS3963;nbOverlaps=0;ID=YDR118W-A;Name=YDR118W-A
IV	S-MART	transcript	688227	690533	.	+	.	seqedit=false;p_id=P4064;gene_id=YDR119W;tss_id=TSS2645;nbOverlaps=0;ID=YDR119W;Name=VBA4
XIV	S-MART	transcript	441431	441586	.	+	.	seqedit=false;p_id=P2377;gene_id=YNL097W-A;tss_id=TSS3847;nbOverlaps=0;ID=YNL097W-A;Name=YNL097W-A
IV	S-MART	transcript	691014	691214	.	+	.	seqedit=false;p_id=P2685;gene_id=YDR119W-A;tss_id=TSS3287;nbOverlaps=0;ID=YDR119W-A;Name=YDR119W-A
IV	S-MART	transcript	691549	693261	.	-	.	seqedit=false;p_id=P624;gene_id=YDR120C;tss_id=TSS1080;nbOverlaps=0;ID=YDR120C;Name=TRM1
IV	S-MART	transcript	693585	694175	.	+	.	seqedit=false;p_id=P2629;gene_id=YDR121W;tss_id=TSS2093;nbOverlaps=0;ID=YDR121W;Name=DPB4
IV	S-MART	transcript	694700	697894	.	+	.	seqedit=false;p_id=P4865;gene_id=YDR122W;tss_id=TSS6167;nbOverlaps=0;ID=YDR122W;Name=KIN1
XIV	S-MART	transcript	695052	695327	.	-	.	seqedit=false;p_id=P106;gene_id=YNR037C;tss_id=TSS1109;nbOverlaps=0;ID=YNR037C;Name=RSM19
IV	S-MART	transcript	698554	699468	.	-	.	seqedit=false;p_id=P2583;gene_id=YDR123C;tss_id=TSS2471;nbOverlaps=0;ID=YDR123C;Name=INO2
IV	S-MART	transcript	701397	702758	.	-	.	seqedit=false;p_id=P2217;gene_id=YDR125C;tss_id=TSS6625;nbOverlaps=0;ID=YDR125C;Name=ECM18
IV	S-MART	transcript	700315	701289	.	+	.	seqedit=false;p_id=P479;gene_id=YDR124W;tss_id=TSS3646;nbOverlaps=0;ID=YDR124W;Name=YDR124W
IV	S-MART	transcript	703234	704244	.	+	.	seqedit=false;p_id=P4059;gene_id=YDR126W;tss_id=TSS411;nbOverlaps=0;ID=YDR126W;Name=SWF1
IV	S-MART	transcript	704484	709250	.	+	.	seqedit=false;p_id=P3454;gene_id=YDR127W;tss_id=TSS6469;nbOverlaps=0;ID=YDR127W;Name=ARO1
IV	S-MART	transcript	709549	712995	.	+	.	seqedit=false;p_id=P1858;gene_id=YDR128W;tss_id=TSS2;nbOverlaps=0;ID=YDR128W;Name=MTC5
IV	S-MART	transcript	713340	715379	.	-	.	seqedit=false;p_id=P6191;gene_id=YDR129C;tss_id=TSS6890;nbOverlaps=0;ID=YDR129C;Name=SAC6
IV	S-MART	exon	713340	715247	.	-	.	ID=YDR129C-exon1;Name=SAC6-exon1;Parent=YDR129C
IV	S-MART	exon	715359	715379	.	-	.	ID=YDR129C-exon2;Name=SAC6-exon2;Parent=YDR129C
XV	S-MART	transcript	61325	65350	.	-	.	seqedit=false;p_id=P4378;gene_id=YOL138C;tss_id=TSS4281;nbOverlaps=0;ID=YOL138C;Name=RTC1
XVI	S-MART	transcript	418512	420011	.	+	.	seqedit=false;p_id=P6246;gene_id=YPL072W;tss_id=TSS3490;nbOverlaps=0;ID=YPL072W;Name=UBP16
XV	S-MART	transcript	60383	61024	.	-	.	seqedit=false;p_id=P5757;gene_id=YOL139C;tss_id=TSS4889;nbOverlaps=0;ID=YOL139C;Name=CDC33
II	S-MART	transcript	643007	643078	.	-	.	seqedit=false;gene_id=tC(GCA)B;tss_id=TSS5995;nbOverlaps=0;ID=tC(GCA)B;Name=tC(GCA)B
IV	S-MART	transcript	715747	716622	.	-	.	seqedit=false;p_id=P1613;gene_id=YDR130C;tss_id=TSS6786;nbOverlaps=0;ID=YDR130C;Name=FIN1
IV	S-MART	transcript	723004	727551	.	-	.	seqedit=false;p_id=P5625;gene_id=YDR135C;tss_id=TSS428;nbOverlaps=0;ID=YDR135C;Name=YCF1
XVI	S-MART	transcript	176223	179021	.	+	.	seqedit=false;p_id=P5819;gene_id=YPL195W;tss_id=TSS5057;nbOverlaps=0;ID=YPL195W;Name=APL5
IV	S-MART	transcript	716790	718460	.	-	.	seqedit=false;p_id=P218;gene_id=YDR131C;tss_id=TSS4826;nbOverlaps=0;ID=YDR131C;Name=YDR131C
IV	S-MART	transcript	718816	720303	.	-	.	seqedit=false;p_id=P4477;gene_id=YDR132C;tss_id=TSS3933;nbOverlaps=0;ID=YDR132C;Name=YDR132C
IV	S-MART	transcript	720962	721297	.	-	.	seqedit=false;p_id=P2366;gene_id=YDR133C;tss_id=TSS6452;nbOverlaps=0;ID=YDR133C;Name=YDR133C
IV	S-MART	transcript	721071	721481	.	-	.	seqedit=false;gene_id=YDR134C;tss_id=TSS6395;nbOverlaps=0;ID=YDR134C;Name=YDR134C
VII	S-MART	transcript	707108	707179	.	-	.	seqedit=false;gene_id=tC(GCA)G;tss_id=TSS437;nbOverlaps=0;ID=tC(GCA)G;Name=tC(GCA)G
IV	S-MART	transcript	727711	728283	.	-	.	seqedit=false;p_id=P2945;gene_id=YDR136C;tss_id=TSS4530;nbOverlaps=0;ID=YDR136C;Name=VPS61
IV	S-MART	transcript	728259	730250	.	+	.	seqedit=false;p_id=P1934;gene_id=YDR137W;tss_id=TSS1881;nbOverlaps=0;ID=YDR137W;Name=RGP1
IV	S-MART	transcript	730578	732836	.	+	.	seqedit=false;p_id=P3696;gene_id=YDR138W;tss_id=TSS6744;nbOverlaps=0;ID=YDR138W;Name=HPR1
IV	S-MART	transcript	733618	733924	.	-	.	seqedit=false;p_id=P3779;gene_id=YDR139C;tss_id=TSS2375;nbOverlaps=0;ID=YDR139C;Name=RUB1
IV	S-MART	exon	733618	733702	.	-	.	ID=YDR139C-exon1;Name=RUB1-exon1;Parent=YDR139C
IV	S-MART	exon	733776	733924	.	-	.	ID=YDR139C-exon2;Name=RUB1-exon2;Parent=YDR139C
XV	S-MART	transcript	43694	44722	.	+	.	seqedit=false;p_id=P4365;gene_id=YOL151W;tss_id=TSS6288;nbOverlaps=0;ID=YOL151W;Name=GRE2
XV	S-MART	transcript	44473	44784	.	-	.	seqedit=false;p_id=P4207;gene_id=YOL150C;tss_id=TSS4657;nbOverlaps=0;ID=YOL150C;Name=YOL150C
XVI	S-MART	transcript	775765	775836	.	-	.	seqedit=false;gene_id=tC(GCA)P2;tss_id=TSS5329;nbOverlaps=0;ID=tC(GCA)P2;Name=tC(GCA)P2
IV	S-MART	transcript	734138	734803	.	+	.	seqedit=false;p_id=P3259;gene_id=YDR140W;tss_id=TSS1332;nbOverlaps=0;ID=YDR140W;Name=MTQ2
IV	S-MART	transcript	734901	739997	.	-	.	seqedit=false;p_id=P2874;gene_id=YDR141C;tss_id=TSS2970;nbOverlaps=0;ID=YDR141C;Name=DOP1
IV	S-MART	transcript	740473	741600	.	-	.	seqedit=false;p_id=P5334;gene_id=YDR142C;tss_id=TSS4641;nbOverlaps=0;ID=YDR142C;Name=PEX7
IV	S-MART	transcript	742042	743874	.	-	.	seqedit=false;p_id=P1266;gene_id=YDR143C;tss_id=TSS2313;nbOverlaps=0;ID=YDR143C;Name=SAN1
IV	S-MART	transcript	744311	746101	.	-	.	seqedit=false;p_id=P3611;gene_id=YDR144C;tss_id=TSS5044;nbOverlaps=0;ID=YDR144C;Name=MKC7
IV	S-MART	transcript	746738	748357	.	+	.	seqedit=false;p_id=P5289;gene_id=YDR145W;tss_id=TSS2191;nbOverlaps=0;ID=YDR145W;Name=TAF12
IV	S-MART	transcript	748613	750742	.	-	.	seqedit=false;p_id=P4881;gene_id=YDR146C;tss_id=TSS2544;nbOverlaps=0;ID=YDR146C;Name=SWI5
IV	S-MART	transcript	751631	753235	.	+	.	seqedit=false;p_id=P6355;gene_id=YDR147W;tss_id=TSS6586;nbOverlaps=0;ID=YDR147W;Name=EKI1
IV	S-MART	transcript	753675	755066	.	-	.	seqedit=false;p_id=P6546;gene_id=YDR148C;tss_id=TSS2835;nbOverlaps=0;ID=YDR148C;Name=KGD2
XIV	S-MART	transcript	695595	697484	.	+	.	seqedit=false;p_id=P943;gene_id=YNR038W;tss_id=TSS520;nbOverlaps=0;ID=YNR038W;Name=DBP6
IV	S-MART	transcript	755628	763874	.	+	.	seqedit=false;p_id=P6330;gene_id=YDR150W;tss_id=TSS1266;nbOverlaps=0;ID=YDR150W;Name=NUM1
IV	S-MART	transcript	755555	756262	.	-	.	seqedit=false;p_id=P4245;gene_id=YDR149C;tss_id=TSS6334;nbOverlaps=0;ID=YDR149C;Name=YDR149C
IV	S-MART	transcript	764178	765155	.	-	.	seqedit=false;p_id=P1005;gene_id=YDR151C;tss_id=TSS2440;nbOverlaps=0;ID=YDR151C;Name=CTH1
IV	S-MART	transcript	765706	766503	.	+	.	seqedit=false;p_id=P6485;gene_id=YDR152W;tss_id=TSS845;nbOverlaps=0;ID=YDR152W;Name=GIR2
IV	S-MART	transcript	766736	767971	.	-	.	seqedit=false;p_id=P2847;gene_id=YDR153C;tss_id=TSS5229;nbOverlaps=0;ID=YDR153C;Name=ENT5
IV	S-MART	transcript	768512	769000	.	-	.	seqedit=false;p_id=P5993;gene_id=YDR155C;tss_id=TSS863;nbOverlaps=0;ID=YDR155C;Name=CPR1
IV	S-MART	transcript	768403	768753	.	-	.	seqedit=false;p_id=P6602;gene_id=YDR154C;tss_id=TSS1412;nbOverlaps=0;ID=YDR154C;Name=YDR154C
IV	S-MART	transcript	769525	769938	.	+	.	seqedit=false;p_id=P350;gene_id=YDR156W;tss_id=TSS299;nbOverlaps=0;ID=YDR156W;Name=RPA14
XVI	S-MART	transcript	420048	420518	.	-	.	seqedit=false;p_id=P1370;gene_id=YPL071C;tss_id=TSS669;nbOverlaps=0;ID=YPL071C;Name=YPL071C
IV	S-MART	transcript	770357	771454	.	+	.	seqedit=false;p_id=P367;gene_id=YDR158W;tss_id=TSS933;nbOverlaps=0;ID=YDR158W;Name=HOM2
II	S-MART	transcript	405960	406031	.	+	.	seqedit=false;gene_id=tD(GUC)B;tss_id=TSS208;nbOverlaps=0;ID=tD(GUC)B;Name=tD(GUC)B
IV	S-MART	transcript	769931	770332	.	+	.	seqedit=false;p_id=P440;gene_id=YDR157W;tss_id=TSS1167;nbOverlaps=0;ID=YDR157W;Name=YDR157W
IV	S-MART	transcript	771877	775782	.	+	.	seqedit=false;p_id=P5468;gene_id=YDR159W;tss_id=TSS2115;nbOverlaps=0;ID=YDR159W;Name=SAC3
XVI	S-MART	transcript	175043	175864	.	+	.	seqedit=false;p_id=P96;gene_id=YPL196W;tss_id=TSS6897;nbOverlaps=0;ID=YPL196W;Name=OXR1
IV	S-MART	transcript	776163	778721	.	+	.	seqedit=false;p_id=P2089;gene_id=YDR160W;tss_id=TSS2956;nbOverlaps=0;ID=YDR160W;Name=SSY1
IV	S-MART	transcript	780390	781100	.	-	.	seqedit=false;p_id=P795;gene_id=YDR162C;tss_id=TSS4758;nbOverlaps=0;ID=YDR162C;Name=NBP2
IV	S-MART	transcript	779043	780206	.	+	.	seqedit=false;p_id=P5541;gene_id=YDR161W;tss_id=TSS2285;nbOverlaps=0;ID=YDR161W;Name=YDR161W
IV	S-MART	transcript	781423	781950	.	+	.	seqedit=false;p_id=P2795;gene_id=YDR163W;tss_id=TSS650;nbOverlaps=0;ID=YDR163W;Name=CWC15
IV	S-MART	transcript	568964	569035	.	+	.	seqedit=false;gene_id=tD(GUC)D;tss_id=TSS4487;nbOverlaps=0;ID=tD(GUC)D;Name=tD(GUC)D
IV	S-MART	transcript	782041	784215	.	-	.	seqedit=false;p_id=P5419;gene_id=YDR164C;tss_id=TSS6647;nbOverlaps=0;ID=YDR164C;Name=SEC1
IV	S-MART	transcript	784871	786205	.	+	.	seqedit=false;p_id=P1705;gene_id=YDR165W;tss_id=TSS747;nbOverlaps=0;ID=YDR165W;Name=TRM82
IV	S-MART	transcript	786306	789221	.	-	.	seqedit=false;p_id=P1759;gene_id=YDR166C;tss_id=TSS220;nbOverlaps=0;ID=YDR166C;Name=SEC5
IV	S-MART	transcript	789449	790069	.	+	.	seqedit=false;p_id=P4171;gene_id=YDR167W;tss_id=TSS2808;nbOverlaps=0;ID=YDR167W;Name=TAF10
IV	S-MART	transcript	790328	791848	.	+	.	seqedit=false;p_id=P456;gene_id=YDR168W;tss_id=TSS6949;nbOverlaps=0;ID=YDR168W;Name=CDC37
IV	S-MART	transcript	792348	793889	.	-	.	seqedit=false;p_id=P5012;gene_id=YDR169C;tss_id=TSS3641;nbOverlaps=0;ID=YDR169C;Name=STB3
VII	S-MART	transcript	544577	544648	.	-	.	seqedit=false;gene_id=tD(GUC)G2;tss_id=TSS1098;nbOverlaps=0;ID=tD(GUC)G2;Name=tD(GUC)G2
IV	S-MART	transcript	794574	794723	.	-	.	seqedit=false;p_id=P5676;gene_id=YDR169C-A;tss_id=TSS1981;nbOverlaps=0;ID=YDR169C-A;Name=YDR169C-A
IV	S-MART	transcript	796193	802222	.	-	.	seqedit=false;p_id=P5079;gene_id=YDR170C;tss_id=TSS5955;nbOverlaps=0;ID=YDR170C;Name=SEC7
IV	S-MART	transcript	803195	804517	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_0009_FC:3:106:1656:20507#0--HWUSI-EAS1656_00;p_id=P1553;gene_id=YDR170W-A;tss_id=TSS6166;nbOverlaps=11;ID=YDR170W-A;Name=YDR170W-A
IV	S-MART	transcript	806621	807748	.	+	.	seqedit=false;p_id=P964;gene_id=YDR171W;tss_id=TSS6704;nbOverlaps=0;ID=YDR171W;Name=HSP42
XVI	S-MART	transcript	469939	471996	.	+	.	seqedit=false;p_id=P2909;gene_id=YPL043W;tss_id=TSS1383;nbOverlaps=0;ID=YPL043W;Name=NOP4
IV	S-MART	transcript	808324	810381	.	+	.	seqedit=false;p_id=P379;gene_id=YDR172W;tss_id=TSS1889;nbOverlaps=0;ID=YDR172W;Name=SUP35
II	S-MART	transcript	427698	429101	.	-	.	seqedit=false;p_id=P241;gene_id=YBR092C;tss_id=TSS3400;nbOverlaps=0;ID=YBR092C;Name=PHO3
IV	S-MART	transcript	810565	811632	.	-	.	seqedit=false;p_id=P6282;gene_id=YDR173C;tss_id=TSS4190;nbOverlaps=0;ID=YDR173C;Name=ARG82
IX	S-MART	transcript	324303	324374	.	-	.	seqedit=false;gene_id=tD(GUC)I1;tss_id=TSS1505;nbOverlaps=0;ID=tD(GUC)I1;Name=tD(GUC)I1
XVI	S-MART	transcript	943880	944188	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:17817:12043#0--HWUSI-EAS1656_0009_FC:3:1:7350:6281#0--HWUSI-EAS1656_0009_;p_id=P4951;gene_id=YPR203W;tss_id=TSS2481;nbOverlaps=61;ID=YPR203W;Name=YPR203W
VII	S-MART	transcript	345986	346230	.	+	.	seqedit=false;gene_id=snR10;tss_id=TSS3692;nbOverlaps=0;ID=snR10;Name=SNR10
XVI	S-MART	transcript	944603	947701	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:11690:21395#0--HWUSI-EAS1656_0009_FC:3:32:2798:6722#0--HWUSI-EAS1656_0009;p_id=P2697;gene_id=YPR204W;tss_id=TSS839;nbOverlaps=331;ID=YPR204W;Name=YPR204W
IX	S-MART	transcript	336349	336420	.	-	.	seqedit=false;gene_id=tD(GUC)I2;tss_id=TSS6117;nbOverlaps=0;ID=tD(GUC)I2;Name=tD(GUC)I2
XIII	S-MART	transcript	652275	652532	.	+	.	seqedit=false;gene_id=snR11;tss_id=TSS5494;nbOverlaps=0;ID=snR11;Name=SNR11
X	S-MART	transcript	139566	139691	.	-	.	seqedit=false;gene_id=snR128;tss_id=TSS1112;nbOverlaps=0;ID=snR128;Name=SNR128
IV	S-MART	transcript	1402919	1403042	.	+	.	seqedit=false;gene_id=snR13;tss_id=TSS1910;nbOverlaps=0;ID=snR13;Name=SNR13
V	S-MART	transcript	167427	167586	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:118:17576:10404#0--HWUSI-EAS1656_0009_FC:3:70:13629:18806#0--HWUSI-EAS1656_0;gene_id=snR14;tss_id=TSS4111;nbOverlaps=1039;ID=snR14;Name=SNR14
II	S-MART	transcript	307185	307345	.	-	.	seqedit=false;gene_id=snR161;tss_id=TSS2137;nbOverlaps=0;ID=snR161;Name=SNR161
XVI	S-MART	transcript	415763	418027	.	+	.	seqedit=false;p_id=P1247;gene_id=YPL074W;tss_id=TSS2258;nbOverlaps=0;ID=YPL074W;Name=YTA6
XV	S-MART	transcript	780107	780596	.	+	.	seqedit=false;gene_id=snR17a;tss_id=TSS4720;nbOverlaps=0;ID=snR17a;Name=SNR17A
XV	S-MART	exon	780107	780120	.	+	.	ID=snR17a-exon1;Name=SNR17A-exon1;Parent=snR17a
XV	S-MART	exon	780278	780596	.	+	.	ID=snR17a-exon2;Name=SNR17A-exon2;Parent=snR17a
X	S-MART	transcript	204735	204806	.	+	.	seqedit=false;gene_id=tD(GUC)J1;tss_id=TSS1491;nbOverlaps=0;ID=tD(GUC)J1;Name=tD(GUC)J1
XVI	S-MART	transcript	173152	174702	.	+	.	seqedit=false;p_id=P2601;gene_id=YPL198W;tss_id=TSS5415;nbOverlaps=0;ID=YPL198W;Name=RPL7B
XVI	S-MART	exon	173152	173162	.	+	.	ID=YPL198W-exon1;Name=RPL7B-exon1;Parent=YPL198W
XVI	S-MART	exon	173572	173665	.	+	.	ID=YPL198W-exon2;Name=RPL7B-exon2;Parent=YPL198W
XVI	S-MART	exon	174073	174702	.	+	.	ID=YPL198W-exon3;Name=RPL7B-exon3;Parent=YPL198W
XVI	S-MART	transcript	281056	281517	.	-	.	seqedit=false;gene_id=snR17b;tss_id=TSS201;nbOverlaps=0;ID=snR17b;Name=SNR17B
XVI	S-MART	exon	281056	281373	.	-	.	ID=snR17b-exon1;Name=SNR17B-exon1;Parent=snR17b
XVI	S-MART	exon	281504	281517	.	-	.	ID=snR17b-exon2;Name=SNR17B-exon2;Parent=snR17b
III	S-MART	transcript	139185	140933	.	-	.	seqedit=false;p_id=P6387;gene_id=YCR014C;tss_id=TSS3514;nbOverlaps=0;ID=YCR014C;Name=POL4
I	S-MART	transcript	142367	142468	.	+	.	seqedit=false;gene_id=snR18;tss_id=TSS3970;nbOverlaps=0;ID=snR18;Name=SNR18
X	S-MART	transcript	355456	355527	.	+	.	seqedit=false;gene_id=tD(GUC)J2;tss_id=TSS3714;nbOverlaps=0;ID=tD(GUC)J2;Name=tD(GUC)J2
III	S-MART	transcript	178610	178798	.	-	.	seqedit=false;gene_id=snR189;tss_id=TSS2363;nbOverlaps=0;ID=snR189;Name=SNR189
XIV	S-MART	transcript	230105	230672	.	-	.	seqedit=false;gene_id=snR19;tss_id=TSS316;nbOverlaps=0;ID=snR19;Name=SNR19
X	S-MART	transcript	139761	139950	.	-	.	seqedit=false;gene_id=snR190;tss_id=TSS5252;nbOverlaps=0;ID=snR190;Name=SNR190
XIV	S-MART	transcript	721938	722211	.	-	.	seqedit=false;gene_id=snR191;tss_id=TSS5996;nbOverlaps=0;ID=snR191;Name=SNR191
XIII	S-MART	transcript	499984	500072	.	-	.	seqedit=false;gene_id=snR24;tss_id=TSS6906;nbOverlaps=0;ID=snR24;Name=SNR24
X	S-MART	transcript	663749	663942	.	+	.	seqedit=false;gene_id=snR3;tss_id=TSS932;nbOverlaps=0;ID=snR3;Name=SNR3
X	S-MART	transcript	374424	374495	.	-	.	seqedit=false;gene_id=tD(GUC)J3;tss_id=TSS2032;nbOverlaps=0;ID=tD(GUC)J3;Name=tD(GUC)J3
XII	S-MART	transcript	198784	199389	.	+	.	seqedit=false;gene_id=snR30;tss_id=TSS6772;nbOverlaps=0;ID=snR30;Name=SNR30
XV	S-MART	transcript	841958	842182	.	-	.	seqedit=false;gene_id=snR31;tss_id=TSS1444;nbOverlaps=0;ID=snR31;Name=SNR31
VIII	S-MART	transcript	381540	381727	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:18669:10062#0--HWUSI-EAS1656_0009_FC:3:115:17087:1580#0--HWUSI-EAS1656_00;gene_id=snR32;tss_id=TSS3329;nbOverlaps=11711;ID=snR32;Name=SNR32
III	S-MART	transcript	142364	142546	.	-	.	seqedit=false;gene_id=snR33;tss_id=TSS102;nbOverlaps=0;ID=snR33;Name=SNR33
XII	S-MART	transcript	899180	899382	.	+	.	seqedit=false;gene_id=snR34;tss_id=TSS3632;nbOverlaps=0;ID=snR34;Name=SNR34
XIV	S-MART	transcript	437613	438317	.	+	.	seqedit=false;p_id=P6469;gene_id=YNL100W;tss_id=TSS4153;nbOverlaps=0;ID=YNL100W;Name=AIM37
XV	S-MART	transcript	759326	759529	.	-	.	seqedit=false;gene_id=snR35;tss_id=TSS3197;nbOverlaps=0;ID=snR35;Name=SNR35
X	S-MART	transcript	541508	541579	.	+	.	seqedit=false;gene_id=tD(GUC)J4;tss_id=TSS4948;nbOverlaps=0;ID=tD(GUC)J4;Name=tD(GUC)J4
XV	S-MART	transcript	680685	680866	.	-	.	seqedit=false;gene_id=snR36;tss_id=TSS4365;nbOverlaps=0;ID=snR36;Name=SNR36
X	S-MART	transcript	228094	228479	.	-	.	seqedit=false;gene_id=snR37;tss_id=TSS4444;nbOverlaps=0;ID=snR37;Name=SNR37
XI	S-MART	transcript	283185	283279	.	+	.	seqedit=false;gene_id=snR38;tss_id=TSS4285;nbOverlaps=0;ID=snR38;Name=SNR38
VII	S-MART	transcript	365163	365251	.	-	.	seqedit=false;gene_id=snR39;tss_id=TSS2028;nbOverlaps=0;ID=snR39;Name=SNR39
XVI	S-MART	transcript	195950	197788	.	-	.	seqedit=false;p_id=P6532;gene_id=YPL184C;tss_id=TSS6863;nbOverlaps=0;ID=YPL184C;Name=MRN1
VII	S-MART	transcript	366374	366469	.	-	.	seqedit=false;gene_id=snR39B;tss_id=TSS62;nbOverlaps=0;ID=snR39B;Name=SNR39B
V	S-MART	transcript	424698	424883	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:39:12709:20557#0--HWUSI-EAS1656_0009_FC:3:9:6755:16916#0--HWUSI-EAS1656_0009;gene_id=snR4;tss_id=TSS3860;nbOverlaps=10385;ID=snR4;Name=SNR4
XII	S-MART	transcript	427132	427203	.	+	.	seqedit=false;gene_id=tD(GUC)L1;tss_id=TSS4669;nbOverlaps=0;ID=tD(GUC)L1;Name=tD(GUC)L1
XIV	S-MART	transcript	89210	89306	.	+	.	seqedit=false;gene_id=snR40;tss_id=TSS3207;nbOverlaps=0;ID=snR40;Name=SNR40
XVI	S-MART	transcript	719148	719242	.	-	.	seqedit=false;gene_id=snR41;tss_id=TSS1523;nbOverlaps=0;ID=snR41;Name=SNR41
XI	S-MART	transcript	559016	559366	.	-	.	seqedit=false;gene_id=snR42;tss_id=TSS3864;nbOverlaps=0;ID=snR42;Name=SNR42
III	S-MART	transcript	107504	107712	.	-	.	seqedit=false;gene_id=snR43;tss_id=TSS3362;nbOverlaps=0;ID=snR43;Name=SNR43
XII	S-MART	transcript	856710	856920	.	+	.	seqedit=false;gene_id=snR44;tss_id=TSS6160;nbOverlaps=0;ID=snR44;Name=SNR44
XVI	S-MART	transcript	418499	418984	.	-	.	seqedit=false;p_id=P894;gene_id=YPL073C;tss_id=TSS3666;nbOverlaps=0;ID=YPL073C;Name=YPL073C
XVI	S-MART	transcript	821732	821903	.	+	.	seqedit=false;gene_id=snR45;tss_id=TSS475;nbOverlaps=0;ID=snR45;Name=SNR45
XI	S-MART	transcript	513332	513403	.	-	.	seqedit=false;gene_id=tD(GUC)K;tss_id=TSS1286;nbOverlaps=0;ID=tD(GUC)K;Name=tD(GUC)K
VII	S-MART	transcript	545370	545566	.	+	.	seqedit=false;gene_id=snR46;tss_id=TSS6799;nbOverlaps=0;ID=snR46;Name=SNR46
IV	S-MART	transcript	541602	541700	.	-	.	seqedit=false;gene_id=snR47;tss_id=TSS6100;nbOverlaps=0;ID=snR47;Name=SNR47
XVI	S-MART	transcript	174343	174756	.	-	.	seqedit=false;p_id=P2085;gene_id=YPL197C;tss_id=TSS1005;nbOverlaps=0;ID=YPL197C;Name=YPL197C
VII	S-MART	transcript	609584	609696	.	+	.	seqedit=false;gene_id=snR48;tss_id=TSS1862;nbOverlaps=0;ID=snR48;Name=SNR48
XIV	S-MART	transcript	716120	716284	.	+	.	seqedit=false;gene_id=snR49;tss_id=TSS6342;nbOverlaps=0;ID=snR49;Name=SNR49
XV	S-MART	transcript	842403	842606	.	+	.	seqedit=false;gene_id=snR5;tss_id=TSS4537;nbOverlaps=0;ID=snR5;Name=SNR5
XV	S-MART	transcript	259489	259578	.	+	.	seqedit=false;gene_id=snR50;tss_id=TSS6010;nbOverlaps=0;ID=snR50;Name=SNR50
XII	S-MART	transcript	793918	793989	.	+	.	seqedit=false;gene_id=tD(GUC)L2;tss_id=TSS3443;nbOverlaps=0;ID=tD(GUC)L2;Name=tD(GUC)L2
XVI	S-MART	transcript	718700	718806	.	-	.	seqedit=false;gene_id=snR51;tss_id=TSS3958;nbOverlaps=0;ID=snR51;Name=SNR51
V	S-MART	transcript	431129	431220	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:2800:8825#0--HWUSI-EAS1656_0009_FC:3:18:18319:18665#0--HWUSI-EAS1656_000;gene_id=snR52;tss_id=TSS501;nbOverlaps=8313;ID=snR52;Name=SNR52
V	S-MART	transcript	61699	61789	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:16792:18823#0--HWUSI-EAS1656_0009_FC:3:120:1254:19957#0--HWUSI-EAS1656_00;gene_id=snR53;tss_id=TSS580;nbOverlaps=708;ID=snR53;Name=SNR53
XIII	S-MART	transcript	163535	163620	.	-	.	seqedit=false;gene_id=snR54;tss_id=TSS1333;nbOverlaps=0;ID=snR54;Name=SNR54
XII	S-MART	transcript	794697	794794	.	-	.	seqedit=false;gene_id=snR55;tss_id=TSS3021;nbOverlaps=0;ID=snR55;Name=SNR55
II	S-MART	transcript	88190	88277	.	+	.	seqedit=false;gene_id=snR56;tss_id=TSS774;nbOverlaps=0;ID=snR56;Name=SNR56
V	S-MART	transcript	177099	177170	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)E1;tss_id=TSS5107;nbOverlaps=1982;ID=tE(UUC)E1;Name=tE(UUC)E1
XII	S-MART	transcript	794937	795024	.	-	.	seqedit=false;gene_id=snR57;tss_id=TSS467;nbOverlaps=0;ID=snR57;Name=SNR57
XV	S-MART	transcript	136088	136183	.	-	.	seqedit=false;gene_id=snR58;tss_id=TSS6041;nbOverlaps=0;ID=snR58;Name=SNR58
XVI	S-MART	transcript	173827	173904	.	+	.	seqedit=false;gene_id=snR59;tss_id=TSS4616;nbOverlaps=0;ID=snR59;Name=SNR59
XII	S-MART	transcript	366235	366346	.	+	.	seqedit=false;gene_id=snR6;tss_id=TSS7;nbOverlaps=0;ID=snR6;Name=SNR6
X	S-MART	transcript	349130	349233	.	-	.	seqedit=false;gene_id=snR60;tss_id=TSS6332;nbOverlaps=0;ID=snR60;Name=SNR60
XII	S-MART	transcript	794486	794575	.	-	.	seqedit=false;gene_id=snR61;tss_id=TSS506;nbOverlaps=0;ID=snR61;Name=SNR61
XIII	S-MART	transcript	463554	463625	.	+	.	seqedit=false;gene_id=tD(GUC)M;tss_id=TSS1480;nbOverlaps=0;ID=tD(GUC)M;Name=tD(GUC)M
XV	S-MART	transcript	409765	409864	.	-	.	seqedit=false;gene_id=snR62;tss_id=TSS2526;nbOverlaps=0;ID=snR62;Name=SNR62
IV	S-MART	transcript	323217	323471	.	-	.	seqedit=false;gene_id=snR63;tss_id=TSS993;nbOverlaps=0;ID=snR63;Name=SNR63
XI	S-MART	transcript	38811	38911	.	+	.	seqedit=false;gene_id=snR64;tss_id=TSS5177;nbOverlaps=0;ID=snR64;Name=SNR64
III	S-MART	transcript	177183	177282	.	+	.	seqedit=false;gene_id=snR65;tss_id=TSS5549;nbOverlaps=0;ID=snR65;Name=SNR65
VIII	S-MART	transcript	540549	540782	.	+	.	seqedit=false;p_id=P1388;gene_id=YHR213W-A;tss_id=TSS3614;nbOverlaps=0;ID=YHR213W-A;Name=YHR213W-A
VIII	S-MART	transcript	539151	539747	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:3242:8287#0--HWUSI-EAS1656_0009_FC:3:66:6823:12358#0;p_id=P5781;gene_id=YHR213W;tss_id=TSS2379;nbOverlaps=2;ID=YHR213W;Name=YHR213W
VIII	S-MART	transcript	540800	541099	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:7550:14373#0;p_id=P6258;gene_id=YHR213W-B;tss_id=TSS2235;nbOverlaps=1;ID=YHR213W-B;Name=YHR213W-B
VIII	S-MART	transcript	543964	549346	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P3377;gene_id=YHR214C-B;tss_id=TSS2878;nbOverlaps=429;ID=YHR214C-B;Name=YHR214C-B
VIII	S-MART	exon	543964	547929	.	-	.	ID=YHR214C-B-exon1;Name=YHR214C-B-exon1;Parent=YHR214C-B
VIII	S-MART	exon	547931	549346	.	-	.	ID=YHR214C-B-exon2;Name=YHR214C-B-exon2;Parent=YHR214C-B
VIII	S-MART	transcript	547910	549346	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P3683;gene_id=YHR214C-C;tss_id=TSS2878;nbOverlaps=13;ID=YHR214C-C;Name=YHR214C-C
VIII	S-MART	transcript	550648	550941	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:3560:17712#0--HWUSI-EAS1656_0009_FC:3:63:17285:19819#0;p_id=P4282;gene_id=YHR214C-D;tss_id=TSS3545;nbOverlaps=2;ID=YHR214C-D;Name=YHR214C-D
VIII	S-MART	transcript	551200	551499	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:2193:7166#0--HWUSI-EAS1656_0009_FC:3:96:1678:1625#0;p_id=P5587;gene_id=YHR214C-E;tss_id=TSS2009;nbOverlaps=2;ID=YHR214C-E;Name=YHR214C-E
VIII	S-MART	transcript	543008	543493	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:17814:4640#0--HWUSI-EAS1656_0009_FC:3:28:18340:11756#0--HWUSI-EAS1656_000;p_id=P5266;gene_id=YHR214W-A;tss_id=TSS6054;nbOverlaps=27;ID=YHR214W-A;Name=YHR214W-A
VIII	S-MART	transcript	541651	542262	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:2552:7817#0--HWUSI-EAS1656_0009_FC:3:43:10035:1277#0--HWUSI-EAS1656_0009_;p_id=P2474;gene_id=YHR214W;tss_id=TSS5898;nbOverlaps=16;ID=YHR214W;Name=YHR214W
VIII	S-MART	transcript	552099	553502	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:17621:18125#0--HWUSI-EAS1656_0009_FC:3:100:8547:14823#0--HWUSI-EAS1656_0;p_id=P5324;gene_id=YHR215W;tss_id=TSS192;nbOverlaps=59;ID=YHR215W;Name=PHO12
VIII	S-MART	transcript	554396	555967	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:16177:16365#0--HWUSI-EAS1656_0009_FC:3:35:18003:5039#0--HWUSI-EAS1656_000;p_id=P6630;gene_id=YHR216W;tss_id=TSS1630;nbOverlaps=926;ID=YHR216W;Name=IMD2
VIII	S-MART	transcript	559932	560249	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:89:2460:15441#0--HWUSI-EAS1656_0009_FC:3:112:9913:18751#0--HWUSI-EAS1656_000;p_id=P6115;gene_id=YHR218W-A;tss_id=TSS53;nbOverlaps=25;ID=YHR218W-A;Name=YHR218W-A
VIII	S-MART	transcript	556581	557042	.	-	.	seqedit=false;p_id=P1919;gene_id=YHR217C;tss_id=TSS3313;nbOverlaps=0;ID=YHR217C;Name=YHR217C
VIII	S-MART	transcript	558014	559924	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:32:2798:6722#0--HWUSI-EAS1656_0009;p_id=P2704;gene_id=YHR218W;tss_id=TSS3228;nbOverlaps=216;ID=YHR218W;Name=YHR218W
VIII	S-MART	exon	558014	558615	.	+	.	ID=YHR218W-exon1;Name=YHR218W-exon1;Parent=YHR218W
VIII	S-MART	exon	558715	559924	.	+	.	ID=YHR218W-exon2;Name=YHR218W-exon2;Parent=YHR218W
VIII	S-MART	transcript	561199	561681	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:8694:17363#0--HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_;p_id=P6678;gene_id=YHR219C-A;tss_id=TSS6353;nbOverlaps=74;ID=YHR219C-A;Name=YHR219C-A
IX	S-MART	transcript	350591	353431	.	-	.	seqedit=false;p_id=P803;gene_id=YIL002C;tss_id=TSS2891;nbOverlaps=0;ID=YIL002C;Name=INP51
VIII	S-MART	transcript	560173	562047	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:5808:5521#0--HWUSI-EAS1656_0009_FC:3:85:16259:3682#0--HWUSI-EAS1656_0009_;p_id=P1867;gene_id=YHR219W;tss_id=TSS6014;nbOverlaps=184;ID=YHR219W;Name=YHR219W
IX	S-MART	transcript	353940	355481	.	+	.	seqedit=false;p_id=P2051;gene_id=YIL001W;tss_id=TSS823;nbOverlaps=0;ID=YIL001W;Name=YIL001W
IX	S-MART	transcript	350301	350510	.	+	.	seqedit=false;p_id=P4750;gene_id=YIL002W-A;tss_id=TSS3650;nbOverlaps=0;ID=YIL002W-A;Name=YIL002W-A
IX	S-MART	transcript	349122	350003	.	+	.	seqedit=false;p_id=P6482;gene_id=YIL003W;tss_id=TSS4413;nbOverlaps=0;ID=YIL003W;Name=CFD1
IX	S-MART	transcript	347946	348505	.	-	.	seqedit=false;p_id=P980;gene_id=YIL004C;tss_id=TSS4047;nbOverlaps=0;ID=YIL004C;Name=BET1
IX	S-MART	exon	347946	348363	.	-	.	ID=YIL004C-exon1;Name=BET1-exon1;Parent=YIL004C
IX	S-MART	exon	348495	348505	.	-	.	ID=YIL004C-exon2;Name=BET1-exon2;Parent=YIL004C
IX	S-MART	transcript	345692	347797	.	+	.	seqedit=false;p_id=P2729;gene_id=YIL005W;tss_id=TSS4683;nbOverlaps=0;ID=YIL005W;Name=EPS1
IX	S-MART	transcript	344062	345183	.	+	.	seqedit=false;p_id=P1292;gene_id=YIL006W;tss_id=TSS5797;nbOverlaps=0;ID=YIL006W;Name=YIA6
VII	S-MART	transcript	368596	368922	.	-	.	seqedit=false;p_id=P2943;gene_id=YGL074C;tss_id=TSS1162;nbOverlaps=0;ID=YGL074C;Name=YGL074C
IX	S-MART	transcript	342994	343656	.	-	.	seqedit=false;p_id=P1062;gene_id=YIL007C;tss_id=TSS6194;nbOverlaps=0;ID=YIL007C;Name=NAS2
IX	S-MART	transcript	342536	342835	.	+	.	seqedit=false;p_id=P4433;gene_id=YIL008W;tss_id=TSS6220;nbOverlaps=0;ID=YIL008W;Name=URM1
IX	S-MART	transcript	335666	336212	.	-	.	seqedit=false;p_id=P748;gene_id=YIL009C-A;tss_id=TSS4254;nbOverlaps=0;ID=YIL009C-A;Name=EST3
IX	S-MART	exon	335666	335935	.	-	.	ID=YIL009C-A-exon1;Name=EST3-exon1;Parent=YIL009C-A
IX	S-MART	exon	335937	336212	.	-	.	ID=YIL009C-A-exon2;Name=EST3-exon2;Parent=YIL009C-A
IX	S-MART	transcript	339344	341428	.	+	.	seqedit=false;p_id=P5171;gene_id=YIL009W;tss_id=TSS6001;nbOverlaps=0;ID=YIL009W;Name=FAA3
IX	S-MART	transcript	334882	335529	.	+	.	seqedit=false;p_id=P1496;gene_id=YIL010W;tss_id=TSS1960;nbOverlaps=0;ID=YIL010W;Name=DOT5
IX	S-MART	transcript	333727	334536	.	+	.	seqedit=false;p_id=P2041;gene_id=YIL011W;tss_id=TSS4154;nbOverlaps=0;ID=YIL011W;Name=TIR3
IX	S-MART	transcript	328207	332442	.	-	.	seqedit=false;p_id=P4520;gene_id=YIL013C;tss_id=TSS5917;nbOverlaps=0;ID=YIL013C;Name=PDR11
IX	S-MART	transcript	333011	333352	.	+	.	seqedit=false;p_id=P3639;gene_id=YIL012W;tss_id=TSS5670;nbOverlaps=0;ID=YIL012W;Name=YIL012W
IX	S-MART	transcript	325212	325526	.	-	.	seqedit=false;p_id=P246;gene_id=YIL014C-A;tss_id=TSS3662;nbOverlaps=0;ID=YIL014C-A;Name=YIL014C-A
IX	S-MART	transcript	326103	327995	.	+	.	seqedit=false;p_id=P4418;gene_id=YIL014W;tss_id=TSS535;nbOverlaps=0;ID=YIL014W;Name=MNT3
IX	S-MART	transcript	322342	324105	.	+	.	seqedit=false;p_id=P4376;gene_id=YIL015W;tss_id=TSS2297;nbOverlaps=0;ID=YIL015W;Name=BAR1
IX	S-MART	transcript	321454	321933	.	+	.	seqedit=false;p_id=P6045;gene_id=YIL016W;tss_id=TSS503;nbOverlaps=0;ID=YIL016W;Name=SNL1
IX	S-MART	transcript	318200	320965	.	-	.	seqedit=false;p_id=P1760;gene_id=YIL017C;tss_id=TSS2222;nbOverlaps=0;ID=YIL017C;Name=VID28
IX	S-MART	transcript	316768	317932	.	+	.	seqedit=false;p_id=P4562;gene_id=YIL018W;tss_id=TSS4188;nbOverlaps=0;ID=YIL018W;Name=RPL2B
IX	S-MART	exon	316768	316771	.	+	.	ID=YIL018W-exon1;Name=RPL2B-exon1;Parent=YIL018W
IX	S-MART	exon	317172	317932	.	+	.	ID=YIL018W-exon2;Name=RPL2B-exon2;Parent=YIL018W
XI	S-MART	transcript	202999	203071	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:24:7254:4911#0--HWUSI-EAS1656_0009_FC:3:32:8248:8693#0--HWUSI-EAS1656_0009_F;gene_id=tK(CUU)K;tss_id=TSS6456;nbOverlaps=116;ID=tK(CUU)K;Name=tK(CUU)K
IX	S-MART	transcript	315093	316133	.	+	.	seqedit=false;p_id=P6336;gene_id=YIL019W;tss_id=TSS6571;nbOverlaps=0;ID=YIL019W;Name=FAF1
IX	S-MART	transcript	314035	314820	.	-	.	seqedit=false;p_id=P1222;gene_id=YIL020C;tss_id=TSS3345;nbOverlaps=0;ID=YIL020C;Name=HIS6
IX	S-MART	transcript	313713	314051	.	-	.	seqedit=false;p_id=P2433;gene_id=YIL020C-A;tss_id=TSS5736;nbOverlaps=0;ID=YIL020C-A;Name=YIL020C-A
IX	S-MART	transcript	313199	313468	.	-	.	seqedit=false;p_id=P5952;gene_id=YIL021C-A;tss_id=TSS1002;nbOverlaps=0;ID=YIL021C-A;Name=YIL021C-A
IX	S-MART	transcript	312905	313861	.	+	.	seqedit=false;p_id=P2580;gene_id=YIL021W;tss_id=TSS799;nbOverlaps=0;ID=YIL021W;Name=RPB3
IX	S-MART	transcript	311165	312460	.	+	.	seqedit=false;p_id=P3421;gene_id=YIL022W;tss_id=TSS5497;nbOverlaps=0;ID=YIL022W;Name=TIM44
IX	S-MART	transcript	309386	310426	.	-	.	seqedit=false;p_id=P5032;gene_id=YIL023C;tss_id=TSS4007;nbOverlaps=0;ID=YIL023C;Name=YKE4
IX	S-MART	transcript	304477	307929	.	-	.	seqedit=false;p_id=P695;gene_id=YIL026C;tss_id=TSS2872;nbOverlaps=0;ID=YIL026C;Name=IRR1
IX	S-MART	transcript	308602	309171	.	-	.	seqedit=false;p_id=P511;gene_id=YIL024C;tss_id=TSS3026;nbOverlaps=0;ID=YIL024C;Name=YIL024C
IX	S-MART	transcript	308201	308575	.	-	.	seqedit=false;p_id=P522;gene_id=YIL025C;tss_id=TSS2277;nbOverlaps=0;ID=YIL025C;Name=YIL025C
IX	S-MART	transcript	303679	304104	.	-	.	seqedit=false;p_id=P3690;gene_id=YIL027C;tss_id=TSS591;nbOverlaps=0;ID=YIL027C;Name=KRE27
IX	S-MART	transcript	299735	300106	.	+	.	seqedit=false;p_id=P3132;gene_id=YIL029W-A;tss_id=TSS740;nbOverlaps=0;ID=YIL029W-A;Name=YIL029W-A
IX	S-MART	transcript	302100	302498	.	+	.	seqedit=false;p_id=P476;gene_id=YIL028W;tss_id=TSS3168;nbOverlaps=0;ID=YIL028W;Name=YIL028W
IX	S-MART	transcript	300829	301257	.	-	.	seqedit=false;p_id=P6265;gene_id=YIL029C;tss_id=TSS973;nbOverlaps=0;ID=YIL029C;Name=YIL029C
IX	S-MART	transcript	296050	300009	.	-	.	seqedit=false;p_id=P2926;gene_id=YIL030C;tss_id=TSS5371;nbOverlaps=0;ID=YIL030C;Name=SSM4
IX	S-MART	transcript	295565	295903	.	+	.	seqedit=false;p_id=P258;gene_id=YIL030W-A;tss_id=TSS3029;nbOverlaps=0;ID=YIL030W-A;Name=YIL030W-A
XII	S-MART	transcript	106908	107000	.	+	.	seqedit=false;p_id=P3387;gene_id=YLL019W-A;tss_id=TSS377;nbOverlaps=0;ID=YLL019W-A;Name=YLL019W-A
XII	S-MART	transcript	100947	105347	.	+	.	seqedit=false;p_id=P385;gene_id=YLL021W;tss_id=TSS2764;nbOverlaps=0;ID=YLL021W;Name=SPA2
XII	S-MART	transcript	105556	105861	.	-	.	seqedit=false;p_id=P1851;gene_id=YLL020C;tss_id=TSS487;nbOverlaps=0;ID=YLL020C;Name=YLL020C
XII	S-MART	transcript	99044	100201	.	-	.	seqedit=false;p_id=P1023;gene_id=YLL022C;tss_id=TSS2940;nbOverlaps=0;ID=YLL022C;Name=HIF1
XII	S-MART	transcript	97997	98836	.	-	.	seqedit=false;p_id=P394;gene_id=YLL023C;tss_id=TSS5317;nbOverlaps=0;ID=YLL023C;Name=POM33
XII	S-MART	transcript	95566	97485	.	-	.	seqedit=false;p_id=P3824;gene_id=YLL024C;tss_id=TSS1476;nbOverlaps=0;ID=YLL024C;Name=SSA2
XII	S-MART	transcript	94747	95121	.	+	.	seqedit=false;p_id=P6418;gene_id=YLL025W;tss_id=TSS1194;nbOverlaps=0;ID=YLL025W;Name=PAU17
XII	S-MART	transcript	88623	91349	.	+	.	seqedit=false;p_id=P583;gene_id=YLL026W;tss_id=TSS5251;nbOverlaps=0;ID=YLL026W;Name=HSP104
XII	S-MART	transcript	87403	88155	.	+	.	seqedit=false;p_id=P1281;gene_id=YLL027W;tss_id=TSS444;nbOverlaps=0;ID=YLL027W;Name=ISA1
XII	S-MART	transcript	84804	86564	.	+	.	seqedit=false;p_id=P5824;gene_id=YLL028W;tss_id=TSS3130;nbOverlaps=0;ID=YLL028W;Name=TPO1
XII	S-MART	transcript	81461	83710	.	+	.	seqedit=false;p_id=P6421;gene_id=YLL029W;tss_id=TSS2060;nbOverlaps=0;ID=YLL029W;Name=FRA1
XII	S-MART	transcript	80356	80697	.	-	.	seqedit=false;p_id=P1879;gene_id=YLL030C;tss_id=TSS883;nbOverlaps=0;ID=YLL030C;Name=RRT7
XII	S-MART	transcript	77152	80205	.	-	.	seqedit=false;p_id=P2171;gene_id=YLL031C;tss_id=TSS2250;nbOverlaps=0;ID=YLL031C;Name=GPI13
XII	S-MART	transcript	73409	74101	.	+	.	seqedit=false;p_id=P2561;gene_id=YLL033W;tss_id=TSS4462;nbOverlaps=0;ID=YLL033W;Name=IRC19
XII	S-MART	transcript	74270	76747	.	-	.	seqedit=false;p_id=P3509;gene_id=YLL032C;tss_id=TSS6838;nbOverlaps=0;ID=YLL032C;Name=YLL032C
XII	S-MART	transcript	70633	73146	.	-	.	seqedit=false;p_id=P6308;gene_id=YLL034C;tss_id=TSS3978;nbOverlaps=0;ID=YLL034C;Name=RIX7
XIII	S-MART	transcript	707133	712109	.	+	.	seqedit=false;p_id=P6467;gene_id=YMR219W;tss_id=TSS347;nbOverlaps=0;ID=YMR219W;Name=ESC1
XII	S-MART	transcript	68580	70478	.	+	.	seqedit=false;p_id=P4539;gene_id=YLL035W;tss_id=TSS4075;nbOverlaps=0;ID=YLL035W;Name=GRC3
XII	S-MART	transcript	66745	68256	.	-	.	seqedit=false;p_id=P3384;gene_id=YLL036C;tss_id=TSS2473;nbOverlaps=0;ID=YLL036C;Name=PRP19
XII	S-MART	transcript	65775	66518	.	-	.	seqedit=false;p_id=P5858;gene_id=YLL038C;tss_id=TSS1457;nbOverlaps=0;ID=YLL038C;Name=ENT4
XII	S-MART	transcript	66562	66942	.	+	.	seqedit=false;p_id=P6088;gene_id=YLL037W;tss_id=TSS4570;nbOverlaps=0;ID=YLL037W;Name=YLL037W
XII	S-MART	transcript	64062	65207	.	-	.	seqedit=false;p_id=P4287;gene_id=YLL039C;tss_id=TSS6630;nbOverlaps=0;ID=YLL039C;Name=UBI4
XII	S-MART	transcript	54211	63645	.	-	.	seqedit=false;p_id=P4710;gene_id=YLL040C;tss_id=TSS5372;nbOverlaps=0;ID=YLL040C;Name=VPS13
XII	S-MART	transcript	53131	53931	.	-	.	seqedit=false;p_id=P6241;gene_id=YLL041C;tss_id=TSS1182;nbOverlaps=0;ID=YLL041C;Name=SDH2
XII	S-MART	transcript	52087	52590	.	-	.	seqedit=false;p_id=P544;gene_id=YLL042C;tss_id=TSS2221;nbOverlaps=0;ID=YLL042C;Name=ATG10
XII	S-MART	transcript	49938	51947	.	+	.	seqedit=false;p_id=P6263;gene_id=YLL043W;tss_id=TSS6538;nbOverlaps=0;ID=YLL043W;Name=FPS1
XII	S-MART	transcript	47859	48629	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:5399:19510#0--HWUSI-EAS1656_0009_FC:3:40:17896:1996#0--HWUSI-EAS1656_0009;p_id=P180;gene_id=YLL045C;tss_id=TSS4766;nbOverlaps=832;ID=YLL045C;Name=RPL8B
XII	S-MART	transcript	48216	48662	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:59:5399:19510#0--HWUSI-EAS1656_0009_FC:3:9:1514:17714#0--HWUSI-EAS1656_0009_;p_id=P829;gene_id=YLL044W;tss_id=TSS2669;nbOverlaps=645;ID=YLL044W;Name=YLL044W
XII	S-MART	transcript	46714	47463	.	-	.	seqedit=false;p_id=P424;gene_id=YLL046C;tss_id=TSS4363;nbOverlaps=0;ID=YLL046C;Name=RNP1
XII	S-MART	transcript	41280	46265	.	-	.	seqedit=false;p_id=P3988;gene_id=YLL048C;tss_id=TSS3342;nbOverlaps=0;ID=YLL048C;Name=YBT1
XII	S-MART	transcript	46672	47055	.	+	.	seqedit=false;p_id=P6644;gene_id=YLL047W;tss_id=TSS2385;nbOverlaps=0;ID=YLL047W;Name=YLL047W
XII	S-MART	transcript	40666	41205	.	+	.	seqedit=false;p_id=P994;gene_id=YLL049W;tss_id=TSS5546;nbOverlaps=0;ID=YLL049W;Name=LDB18
XII	S-MART	transcript	39804	40414	.	-	.	seqedit=false;p_id=P5359;gene_id=YLL050C;tss_id=TSS6731;nbOverlaps=0;ID=YLL050C;Name=COF1
XII	S-MART	exon	39804	40221	.	-	.	ID=YLL050C-exon1;Name=COF1-exon1;Parent=YLL050C
XII	S-MART	exon	40401	40414	.	-	.	ID=YLL050C-exon2;Name=COF1-exon2;Parent=YLL050C
XVI	S-MART	transcript	410443	411285	.	+	.	seqedit=false;p_id=P3316;gene_id=YPL076W;tss_id=TSS696;nbOverlaps=0;ID=YPL076W;Name=GPI2
XII	S-MART	transcript	37333	39471	.	-	.	seqedit=false;p_id=P6220;gene_id=YLL051C;tss_id=TSS3365;nbOverlaps=0;ID=YLL051C;Name=FRE6
XVI	S-MART	transcript	171484	171954	.	+	.	seqedit=false;p_id=P1390;gene_id=YPL200W;tss_id=TSS5688;nbOverlaps=0;ID=YPL200W;Name=CSM4
XII	S-MART	transcript	35912	36361	.	-	.	seqedit=false;p_id=P4042;gene_id=YLL052C;tss_id=TSS651;nbOverlaps=0;ID=YLL052C;Name=AQY2
III	S-MART	transcript	138402	139049	.	-	.	seqedit=false;p_id=P3846;gene_id=YCR013C;tss_id=TSS5085;nbOverlaps=0;ID=YCR013C;Name=YCR013C
XII	S-MART	transcript	30109	31704	.	+	.	seqedit=false;p_id=P5837;gene_id=YLL055W;tss_id=TSS2864;nbOverlaps=0;ID=YLL055W;Name=YCT1
XII	S-MART	transcript	35503	35961	.	-	.	seqedit=false;p_id=P174;gene_id=YLL053C;tss_id=TSS1381;nbOverlaps=0;ID=YLL053C;Name=YLL053C
XII	S-MART	transcript	32673	35204	.	-	.	seqedit=false;p_id=P3540;gene_id=YLL054C;tss_id=TSS1498;nbOverlaps=0;ID=YLL054C;Name=YLL054C
XII	S-MART	transcript	25756	26994	.	-	.	seqedit=false;p_id=P4501;gene_id=YLL057C;tss_id=TSS6234;nbOverlaps=0;ID=YLL057C;Name=JLP1
XII	S-MART	transcript	27409	28305	.	-	.	seqedit=false;p_id=P4693;gene_id=YLL056C;tss_id=TSS2294;nbOverlaps=0;ID=YLL056C;Name=YLL056C
XII	S-MART	transcript	21138	21839	.	-	.	seqedit=false;p_id=P3512;gene_id=YLL060C;tss_id=TSS3280;nbOverlaps=0;ID=YLL060C;Name=GTT2
XII	S-MART	transcript	23569	25296	.	+	.	seqedit=false;p_id=P5508;gene_id=YLL058W;tss_id=TSS664;nbOverlaps=0;ID=YLL058W;Name=YLL058W
XII	S-MART	transcript	22474	22980	.	-	.	seqedit=false;p_id=P6311;gene_id=YLL059C;tss_id=TSS2670;nbOverlaps=0;ID=YLL059C;Name=YLL059C
XII	S-MART	transcript	17956	19707	.	+	.	seqedit=false;p_id=P4657;gene_id=YLL061W;tss_id=TSS704;nbOverlaps=0;ID=YLL061W;Name=MMP1
XII	S-MART	transcript	16639	17613	.	-	.	seqedit=false;p_id=P5636;gene_id=YLL062C;tss_id=TSS5165;nbOverlaps=0;ID=YLL062C;Name=MHT1
XII	S-MART	transcript	14648	16072	.	-	.	seqedit=false;p_id=P22;gene_id=YLL063C;tss_id=TSS6193;nbOverlaps=0;ID=YLL063C;Name=AYT1
XII	S-MART	transcript	13083	13445	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0;p_id=P3872;gene_id=YLL064C;tss_id=TSS3685;nbOverlaps=1;ID=YLL064C;Name=PAU18
XII	S-MART	transcript	6486	6968	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P5107;gene_id=YLL066W-A;tss_id=TSS6560;nbOverlaps=68;ID=YLL066W-A;Name=YLL066W-A
XII	S-MART	transcript	11726	12076	.	+	.	seqedit=false;p_id=P2410;gene_id=YLL065W;tss_id=TSS4566;nbOverlaps=0;ID=YLL065W;Name=YLL065W
XII	S-MART	transcript	6120	9836	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_0009_FC:3:103:8471:2201#0--HWUSI-EAS1656_000;p_id=P3580;gene_id=YLL066C;tss_id=TSS1283;nbOverlaps=395;ID=YLL066C;Name=YLL066C
XII	S-MART	exon	6120	9450	.	-	.	ID=YLL066C-exon1;Name=YLL066C-exon1;Parent=YLL066C
XII	S-MART	exon	9550	9836	.	-	.	ID=YLL066C-exon2;Name=YLL066C-exon2;Parent=YLL066C
XII	S-MART	transcript	5605	5775	.	+	.	seqedit=false;p_id=P5365;gene_id=YLL066W-B;tss_id=TSS332;nbOverlaps=0;ID=YLL066W-B;Name=YLL066W-B
XII	S-MART	transcript	843	1325	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P4846;gene_id=YLL067W-A;tss_id=TSS3619;nbOverlaps=68;ID=YLL067W-A;Name=YLL067W-A
XII	S-MART	transcript	585	4301	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_0009_FC:3:103:8471:2201#0--HWUSI-EAS1656_000;p_id=P2370;gene_id=YLL067C;tss_id=TSS2042;nbOverlaps=378;ID=YLL067C;Name=YLL067C
XII	S-MART	exon	585	3915	.	-	.	ID=YLL067C-exon1;Name=YLL067C-exon1;Parent=YLL067C
XII	S-MART	exon	4015	4301	.	-	.	ID=YLL067C-exon2;Name=YLL067C-exon2;Parent=YLL067C
XII	S-MART	transcript	154343	156334	.	-	.	seqedit=false;p_id=P612;gene_id=YLR002C;tss_id=TSS1826;nbOverlaps=0;ID=YLR002C;Name=NOC3
XII	S-MART	transcript	151389	153977	.	-	.	seqedit=false;p_id=P2256;gene_id=YLR001C;tss_id=TSS1666;nbOverlaps=0;ID=YLR001C;Name=YLR001C
XII	S-MART	transcript	156855	157730	.	-	.	seqedit=false;p_id=P6145;gene_id=YLR003C;tss_id=TSS3067;nbOverlaps=0;ID=YLR003C;Name=CMS1
XII	S-MART	transcript	157934	159505	.	-	.	seqedit=false;p_id=P3585;gene_id=YLR004C;tss_id=TSS5487;nbOverlaps=0;ID=YLR004C;Name=THI73
XII	S-MART	transcript	160049	161434	.	+	.	seqedit=false;p_id=P2379;gene_id=YLR005W;tss_id=TSS5658;nbOverlaps=0;ID=YLR005W;Name=SSL1
I	S-MART	transcript	24000	27968	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:97:13970:5187#0--HWUSI-EAS1656_0009_FC:3:65:8770:8378#0--HWUSI-EAS1656_0009_;p_id=P595;gene_id=YAL063C;tss_id=TSS5419;nbOverlaps=33;ID=YAL063C;Name=FLO9
XVI	S-MART	transcript	409368	410090	.	-	.	seqedit=false;p_id=P6640;gene_id=YPL077C;tss_id=TSS1535;nbOverlaps=0;ID=YPL077C;Name=YPL077C
I	S-MART	transcript	22395	22685	.	-	.	seqedit=false;p_id=P2743;gene_id=YAL063C-A;tss_id=TSS6762;nbOverlaps=0;ID=YAL063C-A;Name=YAL063C-A
XVI	S-MART	transcript	406636	407539	.	+	.	seqedit=false;p_id=P2883;gene_id=YPL079W;tss_id=TSS2796;nbOverlaps=0;ID=YPL079W;Name=RPL21B
XVI	S-MART	exon	406636	406646	.	+	.	ID=YPL079W-exon1;Name=RPL21B-exon1;Parent=YPL079W
XVI	S-MART	exon	407068	407539	.	+	.	ID=YPL079W-exon2;Name=RPL21B-exon2;Parent=YPL079W
XVI	S-MART	transcript	168088	169338	.	-	.	seqedit=false;p_id=P6015;gene_id=YPL202C;tss_id=TSS3498;nbOverlaps=0;ID=YPL202C;Name=AFT2
X	S-MART	transcript	517813	517884	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:11579:18582#0--HWUSI-EAS1656_0009_FC:3:85:11283:2015#0--HWUSI-EAS1656_000;gene_id=tM(CAU)J3;tss_id=TSS1131;nbOverlaps=7;ID=tM(CAU)J3;Name=IMT3
XIII	S-MART	transcript	572883	572955	.	-	.	seqedit=false;gene_id=tM(CAU)M;tss_id=TSS6941;nbOverlaps=0;ID=tM(CAU)M;Name=EMT4
XV	S-MART	transcript	710201	710272	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:11579:18582#0--HWUSI-EAS1656_0009_FC:3:32:6911:4127#0--HWUSI-EAS1656_0009;gene_id=tM(CAU)O1;tss_id=TSS2536;nbOverlaps=7;ID=tM(CAU)O1;Name=IMT1
XV	S-MART	transcript	976421	976493	.	+	.	seqedit=false;gene_id=tM(CAU)O2;tss_id=TSS3611;nbOverlaps=0;ID=tM(CAU)O2;Name=EMT2
XVI	S-MART	transcript	338848	338919	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:9031:4975#0--HWUSI-EAS1656_0009_FC:3:57:11579:18582#0--HWUSI-EAS1656_000;gene_id=tM(CAU)P;tss_id=TSS4504;nbOverlaps=5;ID=tM(CAU)P;Name=IMT2
Mito	S-MART	transcript	72630	72705	.	+	.	seqedit=false;gene_id=tM(CAU)Q1;tss_id=TSS6619;nbOverlaps=0;ID=tM(CAU)Q1;Name=tM(CAU)Q1
Mito	S-MART	transcript	85035	85112	.	+	.	seqedit=false;gene_id=tM(CAU)Q2;tss_id=TSS3023;nbOverlaps=0;ID=tM(CAU)Q2;Name=tM(CAU)Q2
XIV	S-MART	transcript	102716	102789	.	+	.	seqedit=false;gene_id=tN(GUU)N1;tss_id=TSS538;nbOverlaps=0;ID=tN(GUU)N1;Name=tN(GUU)N1
III	S-MART	transcript	127716	127789	.	+	.	seqedit=false;gene_id=tN(GUU)C;tss_id=TSS4291;nbOverlaps=0;ID=tN(GUU)C;Name=tN(GUU)C
VI	S-MART	transcript	137486	137559	.	-	.	seqedit=false;gene_id=tN(GUU)F;tss_id=TSS2291;nbOverlaps=0;ID=tN(GUU)F;Name=tN(GUU)F
VII	S-MART	transcript	731137	731210	.	+	.	seqedit=false;gene_id=tN(GUU)G;tss_id=TSS357;nbOverlaps=0;ID=tN(GUU)G;Name=tN(GUU)G
XI	S-MART	transcript	74624	74697	.	+	.	seqedit=false;gene_id=tN(GUU)K;tss_id=TSS1123;nbOverlaps=0;ID=tN(GUU)K;Name=tN(GUU)K
XII	S-MART	transcript	975983	976056	.	-	.	seqedit=false;gene_id=tN(GUU)L;tss_id=TSS2671;nbOverlaps=0;ID=tN(GUU)L;Name=tN(GUU)L
XIV	S-MART	transcript	632599	632672	.	+	.	seqedit=false;gene_id=tN(GUU)N2;tss_id=TSS4161;nbOverlaps=0;ID=tN(GUU)N2;Name=tN(GUU)N2
XV	S-MART	transcript	228331	228404	.	+	.	seqedit=false;gene_id=tN(GUU)O1;tss_id=TSS6177;nbOverlaps=0;ID=tN(GUU)O1;Name=tN(GUU)O1
XV	S-MART	transcript	487439	487512	.	+	.	seqedit=false;gene_id=tN(GUU)O2;tss_id=TSS876;nbOverlaps=0;ID=tN(GUU)O2;Name=tN(GUU)O2
III	S-MART	transcript	123577	123648	.	-	.	seqedit=false;gene_id=tP(AGG)C;tss_id=TSS5927;nbOverlaps=0;ID=tP(AGG)C;Name=SUF2
XVI	S-MART	transcript	810676	810749	.	+	.	seqedit=false;gene_id=tN(GUU)P;tss_id=TSS6922;nbOverlaps=0;ID=tN(GUU)P;Name=tN(GUU)P
Mito	S-MART	transcript	71433	71503	.	+	.	seqedit=false;gene_id=tN(GUU)Q;tss_id=TSS3596;nbOverlaps=0;ID=tN(GUU)Q;Name=tN(GUU)Q
XIV	S-MART	transcript	631846	631917	.	-	.	seqedit=false;gene_id=tP(AGG)N;tss_id=TSS4128;nbOverlaps=0;ID=tP(AGG)N;Name=SUF10
I	S-MART	transcript	139152	139254	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)A;tss_id=TSS4210;nbOverlaps=2342;ID=tP(UGG)A;Name=TRN1
I	S-MART	exon	139152	139187	.	+	.	ID=tP(UGG)A-exon1;Name=TRN1-exon1;Parent=tP(UGG)A
I	S-MART	exon	139219	139254	.	+	.	ID=tP(UGG)A-exon2;Name=TRN1-exon2;Parent=tP(UGG)A
VI	S-MART	transcript	101376	101478	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)F;tss_id=TSS5933;nbOverlaps=2341;ID=tP(UGG)F;Name=SUF9
VI	S-MART	exon	101376	101411	.	+	.	ID=tP(UGG)F-exon1;Name=SUF9-exon1;Parent=tP(UGG)F
VI	S-MART	exon	101443	101478	.	+	.	ID=tP(UGG)F-exon2;Name=SUF9-exon2;Parent=tP(UGG)F
VIII	S-MART	transcript	388893	388995	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:117:2658:8624#0--HWUSI-EAS1656_000;gene_id=tP(UGG)H;tss_id=TSS5321;nbOverlaps=2788;ID=tP(UGG)H;Name=SUF8
VIII	S-MART	exon	388893	388928	.	-	.	ID=tP(UGG)H-exon1;Name=SUF8-exon1;Parent=tP(UGG)H
VIII	S-MART	exon	388960	388995	.	-	.	ID=tP(UGG)H-exon2;Name=SUF8-exon2;Parent=tP(UGG)H
XVI	S-MART	transcript	166256	167398	.	+	.	seqedit=false;p_id=P4945;gene_id=YPL203W;tss_id=TSS3236;nbOverlaps=0;ID=YPL203W;Name=TPK2
XV	S-MART	transcript	595112	600380	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P5144;gene_id=YOR142W-B;tss_id=TSS5949;nbOverlaps=396;ID=YOR142W-B;Name=YOR142W-B
XV	S-MART	exon	595112	596416	.	+	.	ID=YOR142W-B-exon1;Name=YOR142W-B-exon1;Parent=YOR142W-B
XV	S-MART	exon	596418	600380	.	+	.	ID=YOR142W-B-exon2;Name=YOR142W-B-exon2;Parent=YOR142W-B
XII	S-MART	transcript	92548	92650	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)L;tss_id=TSS450;nbOverlaps=2342;ID=tP(UGG)L;Name=tP(UGG)L
XII	S-MART	exon	92548	92583	.	+	.	ID=tP(UGG)L-exon1;Name=tP(UGG)L-exon1;Parent=tP(UGG)L
XII	S-MART	exon	92615	92650	.	+	.	ID=tP(UGG)L-exon2;Name=tP(UGG)L-exon2;Parent=tP(UGG)L
XIV	S-MART	transcript	547094	547196	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)N1;tss_id=TSS337;nbOverlaps=2725;ID=tP(UGG)N1;Name=tP(UGG)N1
XIV	S-MART	exon	547094	547129	.	+	.	ID=tP(UGG)N1-exon1;Name=tP(UGG)N1-exon1;Parent=tP(UGG)N1
XIV	S-MART	exon	547161	547196	.	+	.	ID=tP(UGG)N1-exon2;Name=tP(UGG)N1-exon2;Parent=tP(UGG)N1
XIV	S-MART	transcript	568115	568217	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)N2;tss_id=TSS1449;nbOverlaps=2725;ID=tP(UGG)N2;Name=tP(UGG)N2
XIV	S-MART	exon	568115	568150	.	+	.	ID=tP(UGG)N2-exon1;Name=tP(UGG)N2-exon1;Parent=tP(UGG)N2
XIV	S-MART	exon	568182	568217	.	+	.	ID=tP(UGG)N2-exon2;Name=tP(UGG)N2-exon2;Parent=tP(UGG)N2
XV	S-MART	transcript	301097	301198	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:65:8521:14869#0--HWUSI-EAS1656_0009_FC:3:99:8728:14773#0--HWUSI-EAS1656_0009;gene_id=tP(UGG)O1;tss_id=TSS5819;nbOverlaps=963;ID=tP(UGG)O1;Name=tP(UGG)O1
XV	S-MART	exon	301097	301132	.	+	.	ID=tP(UGG)O1-exon1;Name=tP(UGG)O1-exon1;Parent=tP(UGG)O1
XV	S-MART	exon	301163	301198	.	+	.	ID=tP(UGG)O1-exon2;Name=tP(UGG)O1-exon2;Parent=tP(UGG)O1
XV	S-MART	transcript	464450	464551	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;gene_id=tP(UGG)O2;tss_id=TSS4;nbOverlaps=2337;ID=tP(UGG)O2;Name=SUF11
XV	S-MART	exon	464450	464485	.	+	.	ID=tP(UGG)O2-exon1;Name=SUF11-exon1;Parent=tP(UGG)O2
XV	S-MART	exon	464516	464551	.	+	.	ID=tP(UGG)O2-exon2;Name=SUF11-exon2;Parent=tP(UGG)O2
XV	S-MART	transcript	980683	980787	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:14535:15666#0--HWUSI-EAS1656_0009_FC:3:37:16087:20147#0--HWUSI-EAS1656_0;gene_id=tP(UGG)O3;tss_id=TSS906;nbOverlaps=13;ID=tP(UGG)O3;Name=tP(UGG)O3
XV	S-MART	exon	980683	980718	.	+	.	ID=tP(UGG)O3-exon1;Name=tP(UGG)O3-exon1;Parent=tP(UGG)O3
XV	S-MART	exon	980752	980787	.	+	.	ID=tP(UGG)O3-exon2;Name=tP(UGG)O3-exon2;Parent=tP(UGG)O3
XIII	S-MART	transcript	808246	808317	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:14728:13881#0--HWUSI-EAS1656_0009_FC:3:29:18403:13819#0;gene_id=tQ(CUG)M;tss_id=TSS5361;nbOverlaps=2;ID=tQ(CUG)M;Name=CDC65
Mito	S-MART	transcript	731	802	.	+	.	seqedit=false;gene_id=tP(UGG)Q;tss_id=TSS5104;nbOverlaps=0;ID=tP(UGG)Q;Name=tP(UGG)Q
IV	S-MART	transcript	520972	521043	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)D1;tss_id=TSS6840;nbOverlaps=475;ID=tQ(UUG)D1;Name=tQ(UUG)D1
II	S-MART	transcript	350827	350898	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:5111:12954#0--HWUSI-EAS1656_0009_FC:3:3:6839:9419#0--HWUSI-EAS1656_0009_F;gene_id=tQ(UUG)B;tss_id=TSS6974;nbOverlaps=1985;ID=tQ(UUG)B;Name=tQ(UUG)B
I	S-MART	transcript	12046	12426	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:42:12698:4816#0--HWUSI-EAS1656_0009_FC:3:73:16933:15953#0--HWUSI-EAS1656_000;p_id=P6268;gene_id=YAL064W-B;tss_id=TSS583;nbOverlaps=3;ID=YAL064W-B;Name=YAL064W-B
III	S-MART	transcript	168301	168372	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)C;tss_id=TSS3194;nbOverlaps=483;ID=tQ(UUG)C;Name=tQ(UUG)C
IV	S-MART	transcript	645153	645224	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)D2;tss_id=TSS4297;nbOverlaps=477;ID=tQ(UUG)D2;Name=tQ(UUG)D2
IV	S-MART	transcript	802731	802802	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)D3;tss_id=TSS105;nbOverlaps=477;ID=tQ(UUG)D3;Name=tQ(UUG)D3
XVI	S-MART	transcript	164276	165760	.	+	.	seqedit=false;p_id=P3217;gene_id=YPL204W;tss_id=TSS6649;nbOverlaps=0;ID=YPL204W;Name=HRR25
V	S-MART	transcript	250286	250357	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)E1;tss_id=TSS309;nbOverlaps=483;ID=tQ(UUG)E1;Name=tQ(UUG)E1
V	S-MART	transcript	131082	131153	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:5111:12954#0--HWUSI-EAS1656_0009_FC:3:3:6839:9419#0--HWUSI-EAS1656_0009_F;gene_id=tQ(UUG)E2;tss_id=TSS4608;nbOverlaps=1952;ID=tQ(UUG)E2;Name=tQ(UUG)E2
Mito	S-MART	transcript	63862	63937	.	+	.	seqedit=false;gene_id=tT(UGU)Q1;tss_id=TSS5441;nbOverlaps=0;ID=tT(UGU)Q1;Name=tT(UGU)Q1
VIII	S-MART	transcript	134321	134392	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)H;tss_id=TSS1537;nbOverlaps=510;ID=tQ(UUG)H;Name=tQ(UUG)H
XII	S-MART	transcript	448650	448721	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:114:4430:13389#0--HWUSI-EAS1656_0009_FC:3:35:8343:21066#0--HWUSI-EAS1656_000;gene_id=tQ(UUG)L;tss_id=TSS2339;nbOverlaps=480;ID=tQ(UUG)L;Name=tQ(UUG)L
Mito	S-MART	transcript	66210	66285	.	+	.	seqedit=false;gene_id=tQ(UUG)Q;tss_id=TSS2565;nbOverlaps=0;ID=tQ(UUG)Q;Name=tQ(UUG)Q
II	S-MART	transcript	192451	193512	.	+	.	seqedit=false;p_id=P6452;gene_id=YBL016W;tss_id=TSS5437;nbOverlaps=0;ID=YBL016W;Name=FUS3
II	S-MART	transcript	186844	191583	.	-	.	seqedit=false;p_id=P5542;gene_id=YBL017C;tss_id=TSS564;nbOverlaps=0;ID=YBL017C;Name=PEP1
II	S-MART	transcript	185998	186474	.	-	.	seqedit=false;p_id=P5161;gene_id=YBL018C;tss_id=TSS6299;nbOverlaps=0;ID=YBL018C;Name=POP8
II	S-MART	exon	185998	186352	.	-	.	ID=YBL018C-exon1;Name=POP8-exon1;Parent=YBL018C
II	S-MART	exon	186428	186474	.	-	.	ID=YBL018C-exon2;Name=POP8-exon2;Parent=YBL018C
II	S-MART	transcript	184353	185915	.	+	.	seqedit=false;p_id=P758;gene_id=YBL019W;tss_id=TSS1495;nbOverlaps=0;ID=YBL019W;Name=APN2
II	S-MART	transcript	182401	184125	.	+	.	seqedit=false;p_id=P4926;gene_id=YBL020W;tss_id=TSS5648;nbOverlaps=0;ID=YBL020W;Name=RFT1
II	S-MART	transcript	181660	182094	.	-	.	seqedit=false;p_id=P2344;gene_id=YBL021C;tss_id=TSS4501;nbOverlaps=0;ID=YBL021C;Name=HAP3
II	S-MART	transcript	177874	181275	.	-	.	seqedit=false;p_id=P5352;gene_id=YBL022C;tss_id=TSS1635;nbOverlaps=0;ID=YBL022C;Name=PIM1
II	S-MART	transcript	174920	177526	.	-	.	seqedit=false;p_id=P4677;gene_id=YBL023C;tss_id=TSS6027;nbOverlaps=0;ID=YBL023C;Name=MCM2
II	S-MART	transcript	172534	174588	.	+	.	seqedit=false;p_id=P6673;gene_id=YBL024W;tss_id=TSS751;nbOverlaps=0;ID=YBL024W;Name=NCL1
II	S-MART	transcript	171481	171918	.	+	.	seqedit=false;p_id=P1149;gene_id=YBL025W;tss_id=TSS1500;nbOverlaps=0;ID=YBL025W;Name=RRN10
II	S-MART	transcript	170623	171038	.	+	.	seqedit=false;p_id=P3970;gene_id=YBL026W;tss_id=TSS6773;nbOverlaps=0;ID=YBL026W;Name=LSM2
II	S-MART	exon	170623	170676	.	+	.	ID=YBL026W-exon1;Name=LSM2-exon1;Parent=YBL026W
II	S-MART	exon	170805	171038	.	+	.	ID=YBL026W-exon2;Name=LSM2-exon2;Parent=YBL026W
II	S-MART	transcript	168423	169376	.	+	.	seqedit=false;p_id=P2487;gene_id=YBL027W;tss_id=TSS5350;nbOverlaps=0;ID=YBL027W;Name=RPL19B
II	S-MART	exon	168423	168424	.	+	.	ID=YBL027W-exon1;Name=RPL19B-exon1;Parent=YBL027W
II	S-MART	exon	168809	169376	.	+	.	ID=YBL027W-exon2;Name=RPL19B-exon2;Parent=YBL027W
II	S-MART	transcript	164488	164772	.	-	.	seqedit=false;p_id=P2136;gene_id=YBL029C-A;tss_id=TSS6627;nbOverlaps=0;ID=YBL029C-A;Name=YBL029C-A
IV	S-MART	transcript	1450198	1450853	.	-	.	seqedit=false;p_id=P1746;gene_id=YDR500C;tss_id=TSS6140;nbOverlaps=0;ID=YDR500C;Name=RPL37B
IV	S-MART	exon	1450198	1450457	.	-	.	ID=YDR500C-exon1;Name=RPL37B-exon1;Parent=YDR500C
IV	S-MART	exon	1450847	1450853	.	-	.	ID=YDR500C-exon2;Name=RPL37B-exon2;Parent=YDR500C
II	S-MART	transcript	167518	167838	.	-	.	seqedit=false;p_id=P1449;gene_id=YBL028C;tss_id=TSS4039;nbOverlaps=0;ID=YBL028C;Name=YBL028C
II	S-MART	transcript	163041	163997	.	-	.	seqedit=false;p_id=P4293;gene_id=YBL030C;tss_id=TSS4762;nbOverlaps=0;ID=YBL030C;Name=PET9
XVI	S-MART	transcript	404950	406044	.	+	.	seqedit=false;p_id=P6659;gene_id=YPL081W;tss_id=TSS6513;nbOverlaps=0;ID=YPL081W;Name=RPS9A
XVI	S-MART	exon	404950	404956	.	+	.	ID=YPL081W-exon1;Name=RPS9A-exon1;Parent=YPL081W
XVI	S-MART	exon	405458	406044	.	+	.	ID=YPL081W-exon2;Name=RPS9A-exon2;Parent=YPL081W
II	S-MART	transcript	166134	167264	.	+	.	seqedit=false;p_id=P5483;gene_id=YBL029W;tss_id=TSS5289;nbOverlaps=0;ID=YBL029W;Name=YBL029W
II	S-MART	transcript	161699	162715	.	+	.	seqedit=false;p_id=P4829;gene_id=YBL031W;tss_id=TSS635;nbOverlaps=0;ID=YBL031W;Name=SHE1
XVI	S-MART	transcript	162632	163597	.	-	.	seqedit=false;p_id=P1470;gene_id=YPL206C;tss_id=TSS6235;nbOverlaps=0;ID=YPL206C;Name=PGC1
II	S-MART	transcript	160184	161329	.	+	.	seqedit=false;p_id=P6170;gene_id=YBL032W;tss_id=TSS5584;nbOverlaps=0;ID=YBL032W;Name=HEK2
II	S-MART	transcript	158656	159693	.	-	.	seqedit=false;p_id=P1967;gene_id=YBL033C;tss_id=TSS6504;nbOverlaps=0;ID=YBL033C;Name=RIB1
II	S-MART	transcript	153848	158389	.	-	.	seqedit=false;p_id=P411;gene_id=YBL034C;tss_id=TSS7032;nbOverlaps=0;ID=YBL034C;Name=STU1
II	S-MART	transcript	151493	153610	.	-	.	seqedit=false;p_id=P6228;gene_id=YBL035C;tss_id=TSS2334;nbOverlaps=0;ID=YBL035C;Name=POL12
II	S-MART	transcript	147209	150286	.	+	.	seqedit=false;p_id=P1677;gene_id=YBL037W;tss_id=TSS2037;nbOverlaps=0;ID=YBL037W;Name=APL3
II	S-MART	transcript	150447	151220	.	-	.	seqedit=false;p_id=P5264;gene_id=YBL036C;tss_id=TSS3386;nbOverlaps=0;ID=YBL036C;Name=YBL036C
II	S-MART	transcript	146187	146885	.	+	.	seqedit=false;p_id=P1682;gene_id=YBL038W;tss_id=TSS639;nbOverlaps=0;ID=YBL038W;Name=MRPL16
II	S-MART	transcript	143989	145728	.	-	.	seqedit=false;p_id=P6198;gene_id=YBL039C;tss_id=TSS2403;nbOverlaps=0;ID=YBL039C;Name=URA7
II	S-MART	transcript	144948	145031	.	-	.	seqedit=false;p_id=P49;gene_id=YBL039C-A;tss_id=TSS4654;nbOverlaps=0;ID=YBL039C-A;Name=YBL039C-A
II	S-MART	transcript	143393	143572	.	+	.	seqedit=false;p_id=P6248;gene_id=YBL039W-B;tss_id=TSS1257;nbOverlaps=0;ID=YBL039W-B;Name=YBL039W-B
II	S-MART	transcript	142112	142868	.	-	.	seqedit=false;p_id=P4486;gene_id=YBL040C;tss_id=TSS4349;nbOverlaps=0;ID=YBL040C;Name=ERD2
II	S-MART	exon	142112	142749	.	-	.	ID=YBL040C-exon1;Name=ERD2-exon1;Parent=YBL040C
II	S-MART	exon	142847	142868	.	-	.	ID=YBL040C-exon2;Name=ERD2-exon2;Parent=YBL040C
II	S-MART	transcript	141247	141972	.	+	.	seqedit=false;p_id=P5922;gene_id=YBL041W;tss_id=TSS569;nbOverlaps=0;ID=YBL041W;Name=PRE7
II	S-MART	transcript	138341	140260	.	-	.	seqedit=false;p_id=P4312;gene_id=YBL042C;tss_id=TSS2784;nbOverlaps=0;ID=YBL042C;Name=FUI1
II	S-MART	transcript	136688	137461	.	+	.	seqedit=false;p_id=P5164;gene_id=YBL043W;tss_id=TSS1845;nbOverlaps=0;ID=YBL043W;Name=ECM13
II	S-MART	transcript	134143	135516	.	-	.	seqedit=false;p_id=P3453;gene_id=YBL045C;tss_id=TSS824;nbOverlaps=0;ID=YBL045C;Name=COR1
II	S-MART	transcript	135998	136366	.	+	.	seqedit=false;p_id=P6448;gene_id=YBL044W;tss_id=TSS4883;nbOverlaps=0;ID=YBL044W;Name=YBL044W
II	S-MART	transcript	132424	133749	.	+	.	seqedit=false;p_id=P2402;gene_id=YBL046W;tss_id=TSS1229;nbOverlaps=0;ID=YBL046W;Name=PSY4
II	S-MART	transcript	127895	132040	.	-	.	seqedit=false;p_id=P1820;gene_id=YBL047C;tss_id=TSS1234;nbOverlaps=0;ID=YBL047C;Name=EDE1
II	S-MART	transcript	127299	127610	.	+	.	seqedit=false;p_id=P5221;gene_id=YBL048W;tss_id=TSS205;nbOverlaps=0;ID=YBL048W;Name=RRT1
II	S-MART	transcript	126828	127244	.	+	.	seqedit=false;p_id=P642;gene_id=YBL049W;tss_id=TSS5641;nbOverlaps=0;ID=YBL049W;Name=MOH1
II	S-MART	transcript	125125	126119	.	+	.	seqedit=false;p_id=P3056;gene_id=YBL050W;tss_id=TSS186;nbOverlaps=0;ID=YBL050W;Name=SEC17
II	S-MART	exon	125125	125154	.	+	.	ID=YBL050W-exon1;Name=SEC17-exon1;Parent=YBL050W
II	S-MART	exon	125271	126119	.	+	.	ID=YBL050W-exon2;Name=SEC17-exon2;Parent=YBL050W
II	S-MART	transcript	122753	124759	.	-	.	seqedit=false;p_id=P784;gene_id=YBL051C;tss_id=TSS5661;nbOverlaps=0;ID=YBL051C;Name=PIN4
II	S-MART	transcript	119379	121874	.	-	.	seqedit=false;p_id=P2920;gene_id=YBL052C;tss_id=TSS4418;nbOverlaps=0;ID=YBL052C;Name=SAS3
II	S-MART	transcript	117589	119166	.	+	.	seqedit=false;p_id=P527;gene_id=YBL054W;tss_id=TSS1013;nbOverlaps=0;ID=YBL054W;Name=TOD6
XVI	S-MART	transcript	406172	406498	.	-	.	seqedit=false;p_id=P1469;gene_id=YPL080C;tss_id=TSS3258;nbOverlaps=0;ID=YPL080C;Name=YPL080C
II	S-MART	transcript	119335	119709	.	+	.	seqedit=false;p_id=P3008;gene_id=YBL053W;tss_id=TSS3885;nbOverlaps=0;ID=YBL053W;Name=YBL053W
II	S-MART	transcript	113762	115168	.	+	.	seqedit=false;p_id=P5185;gene_id=YBL056W;tss_id=TSS3803;nbOverlaps=0;ID=YBL056W;Name=PTC3
II	S-MART	transcript	115573	116829	.	-	.	seqedit=false;p_id=P3667;gene_id=YBL055C;tss_id=TSS1710;nbOverlaps=0;ID=YBL055C;Name=YBL055C
II	S-MART	transcript	112801	113427	.	-	.	seqedit=false;p_id=P290;gene_id=YBL057C;tss_id=TSS3703;nbOverlaps=0;ID=YBL057C;Name=PTH2
II	S-MART	transcript	111437	112708	.	+	.	seqedit=false;p_id=P3955;gene_id=YBL058W;tss_id=TSS6255;nbOverlaps=0;ID=YBL058W;Name=SHP1
II	S-MART	transcript	110125	110539	.	-	.	seqedit=false;p_id=P6369;gene_id=YBL059C-A;tss_id=TSS5713;nbOverlaps=0;ID=YBL059C-A;Name=CMC2
II	S-MART	exon	110125	110420	.	-	.	ID=YBL059C-A-exon1;Name=CMC2-exon1;Parent=YBL059C-A
II	S-MART	exon	110506	110539	.	-	.	ID=YBL059C-A-exon2;Name=CMC2-exon2;Parent=YBL059C-A
II	S-MART	transcript	436951	441315	.	+	.	seqedit=false;p_id=P2391;gene_id=YBR097W;tss_id=TSS3359;nbOverlaps=0;ID=YBR097W;Name=VPS15
II	S-MART	transcript	110594	111244	.	+	.	seqedit=false;p_id=P5856;gene_id=YBL059W;tss_id=TSS2773;nbOverlaps=0;ID=YBL059W;Name=YBL059W
II	S-MART	exon	110594	110879	.	+	.	ID=YBL059W-exon1;Name=YBL059W-exon1;Parent=YBL059W
II	S-MART	exon	110949	111244	.	+	.	ID=YBL059W-exon2;Name=YBL059W-exon2;Parent=YBL059W
XIV	S-MART	transcript	250055	250315	.	-	.	seqedit=false;p_id=P2908;gene_id=YNL211C;tss_id=TSS5518;nbOverlaps=0;ID=YNL211C;Name=YNL211C
XIV	S-MART	transcript	246460	247104	.	-	.	seqedit=false;p_id=P2115;gene_id=YNL213C;tss_id=TSS2683;nbOverlaps=0;ID=YNL213C;Name=RRG9
XIV	S-MART	transcript	531725	532186	.	+	.	seqedit=false;p_id=P6112;gene_id=YNL052W;tss_id=TSS5045;nbOverlaps=0;ID=YNL052W;Name=COX5A
XIV	S-MART	transcript	529942	531411	.	+	.	seqedit=false;p_id=P494;gene_id=YNL053W;tss_id=TSS6765;nbOverlaps=0;ID=YNL053W;Name=MSG5
XIV	S-MART	transcript	526086	529583	.	+	.	seqedit=false;p_id=P6160;gene_id=YNL054W;tss_id=TSS770;nbOverlaps=0;ID=YNL054W;Name=VAC7
XIV	S-MART	transcript	519456	520778	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_000;p_id=P2586;gene_id=YNL054W-A;tss_id=TSS1187;nbOverlaps=21;ID=YNL054W-A;Name=YNL054W-A
VI	S-MART	transcript	106469	106963	.	-	.	seqedit=false;p_id=P5105;gene_id=YFL015C;tss_id=TSS360;nbOverlaps=0;ID=YFL015C;Name=YFL015C
VI	S-MART	transcript	104701	106236	.	-	.	seqedit=false;p_id=P3340;gene_id=YFL016C;tss_id=TSS3637;nbOverlaps=0;ID=YFL016C;Name=MDJ1
XIV	S-MART	transcript	234413	235714	.	+	.	seqedit=false;p_id=P84;gene_id=YNL220W;tss_id=TSS2815;nbOverlaps=0;ID=YNL220W;Name=ADE12
VI	S-MART	transcript	103699	103932	.	+	.	seqedit=false;p_id=P3547;gene_id=YFL017W-A;tss_id=TSS4680;nbOverlaps=0;ID=YFL017W-A;Name=SMX2
XIV	S-MART	transcript	229094	229714	.	+	.	seqedit=false;p_id=P2662;gene_id=YNL222W;tss_id=TSS3116;nbOverlaps=0;ID=YNL222W;Name=SSU72
XIV	S-MART	transcript	227370	228854	.	+	.	seqedit=false;p_id=P4289;gene_id=YNL223W;tss_id=TSS4068;nbOverlaps=0;ID=YNL223W;Name=ATG4
XIV	S-MART	transcript	224796	227099	.	-	.	seqedit=false;p_id=P5405;gene_id=YNL224C;tss_id=TSS3743;nbOverlaps=0;ID=YNL224C;Name=SQS1
XIV	S-MART	transcript	222724	224469	.	-	.	seqedit=false;p_id=P2832;gene_id=YNL225C;tss_id=TSS3230;nbOverlaps=0;ID=YNL225C;Name=CNM67
XIV	S-MART	transcript	510540	512396	.	+	.	seqedit=false;p_id=P2682;gene_id=YNL061W;tss_id=TSS6029;nbOverlaps=0;ID=YNL061W;Name=NOP2
XIV	S-MART	transcript	508776	510212	.	-	.	seqedit=false;p_id=P6150;gene_id=YNL062C;tss_id=TSS3159;nbOverlaps=0;ID=YNL062C;Name=GCD10
XIV	S-MART	transcript	219137	220201	.	-	.	seqedit=false;p_id=P4671;gene_id=YNL229C;tss_id=TSS6324;nbOverlaps=0;ID=YNL229C;Name=URE2
VI	S-MART	transcript	87847	90345	.	-	.	seqedit=false;p_id=P4931;gene_id=YFL024C;tss_id=TSS5923;nbOverlaps=0;ID=YFL024C;Name=EPL1
VI	S-MART	transcript	84145	87234	.	-	.	seqedit=false;p_id=P3341;gene_id=YFL025C;tss_id=TSS5689;nbOverlaps=0;ID=YFL025C;Name=BST1
VI	S-MART	transcript	82580	83875	.	+	.	seqedit=false;p_id=P4877;gene_id=YFL026W;tss_id=TSS686;nbOverlaps=0;ID=YFL026W;Name=STE2
XIV	S-MART	transcript	499681	500256	.	+	.	seqedit=false;p_id=P3133;gene_id=YNL067W;tss_id=TSS1125;nbOverlaps=0;ID=YNL067W;Name=RPL9B
XIV	S-MART	transcript	498538	498684	.	+	.	seqedit=false;p_id=P3189;gene_id=YNL067W-A;tss_id=TSS1384;nbOverlaps=0;ID=YNL067W-A;Name=YNL067W-A
XIV	S-MART	transcript	499417	499557	.	+	.	seqedit=false;p_id=P1335;gene_id=YNL067W-B;tss_id=TSS2575;nbOverlaps=0;ID=YNL067W-B;Name=YNL067W-B
XIV	S-MART	transcript	210233	211513	.	+	.	seqedit=false;p_id=P5831;gene_id=YNL234W;tss_id=TSS368;nbOverlaps=0;ID=YNL234W;Name=YNL234W
XV	S-MART	transcript	649303	651732	.	+	.	seqedit=false;p_id=P3840;gene_id=YOR168W;tss_id=TSS346;nbOverlaps=0;ID=YOR168W;Name=GLN4
XIV	S-MART	transcript	493956	495001	.	-	.	seqedit=false;p_id=P5652;gene_id=YNL069C;tss_id=TSS1885;nbOverlaps=0;ID=YNL069C;Name=RPL16B
XIV	S-MART	exon	493956	494524	.	-	.	ID=YNL069C-exon1;Name=RPL16B-exon1;Parent=YNL069C
XIV	S-MART	exon	494974	495001	.	-	.	ID=YNL069C-exon2;Name=RPL16B-exon2;Parent=YNL069C
VI	S-MART	transcript	75179	76147	.	+	.	seqedit=false;p_id=P5058;gene_id=YFL031W;tss_id=TSS6514;nbOverlaps=0;ID=YFL031W;Name=HAC1
VI	S-MART	exon	75179	75839	.	+	.	ID=YFL031W-exon1;Name=HAC1-exon1;Parent=YFL031W
VI	S-MART	exon	76092	76147	.	+	.	ID=YFL031W-exon2;Name=HAC1-exon2;Parent=YFL031W
XIV	S-MART	transcript	202428	204872	.	+	.	seqedit=false;p_id=P5491;gene_id=YNL238W;tss_id=TSS615;nbOverlaps=0;ID=YNL238W;Name=KEX2
XIV	S-MART	transcript	200569	201933	.	+	.	seqedit=false;p_id=P4377;gene_id=YNL239W;tss_id=TSS6286;nbOverlaps=0;ID=YNL239W;Name=LAP3
XIV	S-MART	transcript	491523	492971	.	+	.	seqedit=false;p_id=P4234;gene_id=YNL071W;tss_id=TSS361;nbOverlaps=0;ID=YNL071W;Name=LAT1
XIV	S-MART	transcript	490317	491240	.	+	.	seqedit=false;p_id=P2605;gene_id=YNL072W;tss_id=TSS6080;nbOverlaps=0;ID=YNL072W;Name=RNH201
XIV	S-MART	transcript	488386	490116	.	+	.	seqedit=false;p_id=P6034;gene_id=YNL073W;tss_id=TSS1598;nbOverlaps=0;ID=YNL073W;Name=MSK1
XIV	S-MART	transcript	486766	488124	.	-	.	seqedit=false;p_id=P3311;gene_id=YNL074C;tss_id=TSS6367;nbOverlaps=0;ID=YNL074C;Name=MLF3
XIV	S-MART	transcript	485607	486479	.	+	.	seqedit=false;p_id=P57;gene_id=YNL075W;tss_id=TSS3018;nbOverlaps=0;ID=YNL075W;Name=IMP4
VI	S-MART	transcript	63016	63993	.	-	.	seqedit=false;p_id=P3756;gene_id=YFL034C-B;tss_id=TSS844;nbOverlaps=0;ID=YFL034C-B;Name=MOB2
VI	S-MART	exon	63016	63859	.	-	.	ID=YFL034C-B-exon1;Name=MOB2-exon1;Parent=YFL034C-B
VI	S-MART	exon	63974	63993	.	-	.	ID=YFL034C-B-exon2;Name=MOB2-exon2;Parent=YFL034C-B
XIV	S-MART	transcript	481391	482977	.	+	.	seqedit=false;p_id=P1615;gene_id=YNL077W;tss_id=TSS3450;nbOverlaps=0;ID=YNL077W;Name=APJ1
XIV	S-MART	transcript	479768	480991	.	+	.	seqedit=false;p_id=P934;gene_id=YNL078W;tss_id=TSS2384;nbOverlaps=0;ID=YNL078W;Name=NIS1
VI	S-MART	transcript	58782	62837	.	+	.	seqedit=false;p_id=P5710;gene_id=YFL036W;tss_id=TSS596;nbOverlaps=0;ID=YFL036W;Name=RPO41
VI	S-MART	transcript	65477	68698	.	+	.	seqedit=false;p_id=P182;gene_id=YFL034W;tss_id=TSS2086;nbOverlaps=0;ID=YFL034W;Name=YFL034W
VI	S-MART	transcript	56336	57709	.	+	.	seqedit=false;p_id=P2496;gene_id=YFL037W;tss_id=TSS4981;nbOverlaps=0;ID=YFL037W;Name=TUB2
XIV	S-MART	transcript	179394	181022	.	-	.	seqedit=false;p_id=P2631;gene_id=YNL249C;tss_id=TSS1961;nbOverlaps=0;ID=YNL249C;Name=MPA43
XIV	S-MART	transcript	471377	472861	.	+	.	seqedit=false;p_id=P5699;gene_id=YNL083W;tss_id=TSS4123;nbOverlaps=0;ID=YNL083W;Name=SAL1
XIV	S-MART	transcript	470053	471102	.	-	.	seqedit=false;p_id=P3623;gene_id=YNL084C;tss_id=TSS5769;nbOverlaps=0;ID=YNL084C;Name=END3
XIV	S-MART	transcript	171441	172286	.	-	.	seqedit=false;p_id=P1323;gene_id=YNL252C;tss_id=TSS4898;nbOverlaps=0;ID=YNL252C;Name=MRPL17
XIV	S-MART	transcript	170018	171286	.	+	.	seqedit=false;p_id=P938;gene_id=YNL253W;tss_id=TSS7031;nbOverlaps=0;ID=YNL253W;Name=TEX1
XIV	S-MART	transcript	168043	169248	.	-	.	seqedit=false;p_id=P383;gene_id=YNL254C;tss_id=TSS5989;nbOverlaps=0;ID=YNL254C;Name=RTC4
XIV	S-MART	transcript	167329	167790	.	-	.	seqedit=false;p_id=P2262;gene_id=YNL255C;tss_id=TSS6053;nbOverlaps=0;ID=YNL255C;Name=GIS2
VI	S-MART	transcript	44655	45560	.	-	.	seqedit=false;p_id=P3374;gene_id=YFL044C;tss_id=TSS3231;nbOverlaps=0;ID=YFL044C;Name=OTU1
XIV	S-MART	transcript	160631	164320	.	-	.	seqedit=false;p_id=P3322;gene_id=YNL257C;tss_id=TSS787;nbOverlaps=0;ID=YNL257C;Name=SIP3
XIV	S-MART	transcript	158109	160373	.	-	.	seqedit=false;p_id=P4982;gene_id=YNL258C;tss_id=TSS2062;nbOverlaps=0;ID=YNL258C;Name=DSL1
XIV	S-MART	transcript	157644	157865	.	-	.	seqedit=false;p_id=P2860;gene_id=YNL259C;tss_id=TSS5221;nbOverlaps=0;ID=YNL259C;Name=ATX1
XIV	S-MART	transcript	155100	156539	.	+	.	seqedit=false;p_id=P4930;gene_id=YNL261W;tss_id=TSS3292;nbOverlaps=0;ID=YNL261W;Name=ORC5
XIV	S-MART	transcript	156859	157455	.	-	.	seqedit=false;p_id=P3918;gene_id=YNL260C;tss_id=TSS6702;nbOverlaps=0;ID=YNL260C;Name=YNL260C
XIV	S-MART	transcript	148212	154880	.	+	.	seqedit=false;p_id=P4034;gene_id=YNL262W;tss_id=TSS4405;nbOverlaps=0;ID=YNL262W;Name=POL2
XIV	S-MART	transcript	146896	147840	.	-	.	seqedit=false;p_id=P6615;gene_id=YNL263C;tss_id=TSS3156;nbOverlaps=0;ID=YNL263C;Name=YIF1
XIV	S-MART	transcript	145563	146615	.	-	.	seqedit=false;p_id=P755;gene_id=YNL264C;tss_id=TSS2559;nbOverlaps=0;ID=YNL264C;Name=PDR17
VI	S-MART	transcript	30058	30540	.	-	.	seqedit=false;p_id=P982;gene_id=YFL051C;tss_id=TSS3945;nbOverlaps=0;ID=YFL051C;Name=YFL051C
VI	S-MART	transcript	28232	29629	.	+	.	seqedit=false;p_id=P3886;gene_id=YFL052W;tss_id=TSS3328;nbOverlaps=0;ID=YFL052W;Name=YFL052W
VI	S-MART	transcript	17004	18680	.	+	.	seqedit=false;p_id=P6607;gene_id=YFL055W;tss_id=TSS5261;nbOverlaps=0;ID=YFL055W;Name=AGP3
XIV	S-MART	transcript	140878	144078	.	+	.	seqedit=false;p_id=P413;gene_id=YNL267W;tss_id=TSS318;nbOverlaps=0;ID=YNL267W;Name=PIK1
XIV	S-MART	transcript	439602	440570	.	-	.	seqedit=false;p_id=P4629;gene_id=YNL098C;tss_id=TSS1010;nbOverlaps=0;ID=YNL098C;Name=RAS2
XIV	S-MART	transcript	438567	439283	.	-	.	seqedit=false;p_id=P531;gene_id=YNL099C;tss_id=TSS1901;nbOverlaps=0;ID=YNL099C;Name=OCA1
XIV	S-MART	transcript	137699	138094	.	+	.	seqedit=false;p_id=P4563;gene_id=YNL269W;tss_id=TSS5356;nbOverlaps=0;ID=YNL269W;Name=BSC4
XIV	S-MART	transcript	434999	437140	.	+	.	seqedit=false;p_id=P5325;gene_id=YNL101W;tss_id=TSS6022;nbOverlaps=0;ID=YNL101W;Name=AVT4
XVI	S-MART	transcript	398480	404083	.	-	.	seqedit=false;p_id=P3800;gene_id=YPL082C;tss_id=TSS6615;nbOverlaps=0;ID=YPL082C;Name=MOT1
XVI	S-MART	transcript	156490	157593	.	-	.	seqedit=false;p_id=P4571;gene_id=YPL209C;tss_id=TSS3451;nbOverlaps=0;ID=YPL209C;Name=IPL1
XVI	S-MART	transcript	360209	361579	.	+	.	seqedit=false;p_id=P1845;gene_id=YPL101W;tss_id=TSS1467;nbOverlaps=0;ID=YPL101W;Name=ELP4
XVI	S-MART	transcript	396702	398105	.	-	.	seqedit=false;p_id=P3162;gene_id=YPL083C;tss_id=TSS5228;nbOverlaps=0;ID=YPL083C;Name=SEN54
XVI	S-MART	transcript	154290	156212	.	-	.	seqedit=false;p_id=P9;gene_id=YPL210C;tss_id=TSS6789;nbOverlaps=0;ID=YPL210C;Name=SRP72
IV	S-MART	transcript	1331237	1332841	.	+	.	seqedit=false;p_id=P4914;gene_id=YDR434W;tss_id=TSS1448;nbOverlaps=0;ID=YDR434W;Name=GPI17
III	S-MART	transcript	109105	110670	.	+	.	seqedit=false;p_id=P475;gene_id=YCL004W;tss_id=TSS108;nbOverlaps=0;ID=YCL004W;Name=PGS1
I	S-MART	transcript	99305	99868	.	+	.	seqedit=false;gene_id=HRA1;tss_id=TSS6124;nbOverlaps=0;ID=HRA1;Name=HRA1
II	S-MART	transcript	107932	109995	.	+	.	seqedit=false;p_id=P776;gene_id=YBL060W;tss_id=TSS3942;nbOverlaps=0;ID=YBL060W;Name=YEL1
VIII	S-MART	transcript	26241	27881	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:33:8452:14577#0--HWUSI-EAS1656_0009_FC:3:24:10047:20936#0--HWUSI-EAS1656_000;p_id=P3995;gene_id=YHL036W;tss_id=TSS3113;nbOverlaps=342;ID=YHL036W;Name=MUP3
Mito	S-MART	transcript	6546	8194	.	+	.	seqedit=false;gene_id=15S_rRNA;tss_id=TSS2211;nbOverlaps=0;ID=15S_rRNA;Name=15S_RRNA
Mito	S-MART	transcript	58009	62447	.	+	.	seqedit=false;gene_id=21S_rRNA;tss_id=TSS4005;nbOverlaps=0;ID=21S_rRNA;Name=21S_RRNA
Mito	S-MART	exon	58009	60724	.	+	.	ID=21S_rRNA-exon1;Name=21S_RRNA-exon1;Parent=21S_rRNA
Mito	S-MART	exon	61868	62447	.	+	.	ID=21S_rRNA-exon2;Name=21S_RRNA-exon2;Parent=21S_rRNA
IX	S-MART	transcript	393884	397082	.	-	.	seqedit=false;gene_id=ICR1;tss_id=TSS2368;nbOverlaps=0;ID=ICR1;Name=ICR1
II	S-MART	transcript	680688	681862	.	-	.	seqedit=false;gene_id=LSR1;tss_id=TSS550;nbOverlaps=0;ID=LSR1;Name=LSR1
XV	S-MART	transcript	360461	361084	.	-	.	seqedit=false;p_id=P1142;gene_id=YOR016C;tss_id=TSS5741;nbOverlaps=0;ID=YOR016C;Name=ERP4
XV	S-MART	transcript	359993	360352	.	+	.	seqedit=false;p_id=P1088;gene_id=YOR015W;tss_id=TSS1764;nbOverlaps=0;ID=YOR015W;Name=YOR015W
XV	S-MART	transcript	361412	363814	.	+	.	seqedit=false;p_id=P822;gene_id=YOR017W;tss_id=TSS2056;nbOverlaps=0;ID=YOR017W;Name=PET127
XV	S-MART	transcript	364369	366882	.	+	.	seqedit=false;p_id=P6488;gene_id=YOR018W;tss_id=TSS1969;nbOverlaps=0;ID=YOR018W;Name=ROD1
XV	S-MART	transcript	370524	370844	.	-	.	seqedit=false;p_id=P5340;gene_id=YOR020C;tss_id=TSS6036;nbOverlaps=0;ID=YOR020C;Name=HSP10
XV	S-MART	transcript	368127	370319	.	+	.	seqedit=false;p_id=P4577;gene_id=YOR019W;tss_id=TSS5879;nbOverlaps=0;ID=YOR019W;Name=YOR019W
XV	S-MART	transcript	371685	371957	.	+	.	seqedit=false;p_id=P5225;gene_id=YOR020W-A;tss_id=TSS4624;nbOverlaps=0;ID=YOR020W-A;Name=YOR020W-A
XV	S-MART	transcript	376012	377712	.	-	.	seqedit=false;p_id=P1750;gene_id=YOR023C;tss_id=TSS5606;nbOverlaps=0;ID=YOR023C;Name=AHC1
XV	S-MART	transcript	372798	373439	.	-	.	seqedit=false;p_id=P2365;gene_id=YOR021C;tss_id=TSS3344;nbOverlaps=0;ID=YOR021C;Name=YOR021C
XVI	S-MART	transcript	394038	396572	.	+	.	seqedit=false;p_id=P2202;gene_id=YPL084W;tss_id=TSS6133;nbOverlaps=0;ID=YPL084W;Name=BRO1
XV	S-MART	transcript	373710	375857	.	-	.	seqedit=false;p_id=P3238;gene_id=YOR022C;tss_id=TSS1861;nbOverlaps=0;ID=YOR022C;Name=YOR022C
XV	S-MART	transcript	378219	379562	.	+	.	seqedit=false;p_id=P4319;gene_id=YOR025W;tss_id=TSS6002;nbOverlaps=0;ID=YOR025W;Name=HST3
XV	S-MART	transcript	377847	378170	.	+	.	seqedit=false;p_id=P3727;gene_id=YOR024W;tss_id=TSS1284;nbOverlaps=0;ID=YOR024W;Name=YOR024W
XV	S-MART	transcript	379781	380806	.	+	.	seqedit=false;p_id=P1252;gene_id=YOR026W;tss_id=TSS2626;nbOverlaps=0;ID=YOR026W;Name=BUB3
XIV	S-MART	transcript	672409	672969	.	+	.	seqedit=false;p_id=P3630;gene_id=YNR024W;tss_id=TSS132;nbOverlaps=0;ID=YNR024W;Name=MPP6
XV	S-MART	transcript	381053	382822	.	+	.	seqedit=false;p_id=P308;gene_id=YOR027W;tss_id=TSS1760;nbOverlaps=0;ID=YOR027W;Name=STI1
XV	S-MART	transcript	383533	384420	.	-	.	seqedit=false;p_id=P4545;gene_id=YOR028C;tss_id=TSS3284;nbOverlaps=0;ID=YOR028C;Name=CIN5
XV	S-MART	transcript	386825	388684	.	+	.	seqedit=false;p_id=P6634;gene_id=YOR030W;tss_id=TSS5939;nbOverlaps=0;ID=YOR030W;Name=DFG16
XV	S-MART	transcript	384600	384935	.	+	.	seqedit=false;p_id=P6275;gene_id=YOR029W;tss_id=TSS4408;nbOverlaps=0;ID=YOR029W;Name=YOR029W
XV	S-MART	transcript	389213	389422	.	+	.	seqedit=false;p_id=P1241;gene_id=YOR031W;tss_id=TSS2604;nbOverlaps=0;ID=YOR031W;Name=CRS5
XV	S-MART	transcript	389771	391075	.	-	.	seqedit=false;p_id=P6674;gene_id=YOR032C;tss_id=TSS3428;nbOverlaps=0;ID=YOR032C;Name=HMS1
XV	S-MART	transcript	392176	392376	.	+	.	seqedit=false;p_id=P4049;gene_id=YOR032W-A;tss_id=TSS6093;nbOverlaps=0;ID=YOR032W-A;Name=YOR032W-A
XV	S-MART	transcript	392416	394524	.	-	.	seqedit=false;p_id=P3210;gene_id=YOR033C;tss_id=TSS5637;nbOverlaps=0;ID=YOR033C;Name=EXO1
XV	S-MART	transcript	394837	397086	.	-	.	seqedit=false;p_id=P5849;gene_id=YOR034C;tss_id=TSS113;nbOverlaps=0;ID=YOR034C;Name=AKR2
XV	S-MART	transcript	397426	397668	.	-	.	seqedit=false;p_id=P3776;gene_id=YOR034C-A;tss_id=TSS1930;nbOverlaps=0;ID=YOR034C-A;Name=YOR034C-A
XV	S-MART	transcript	397735	400104	.	-	.	seqedit=false;p_id=P5549;gene_id=YOR035C;tss_id=TSS2703;nbOverlaps=0;ID=YOR035C;Name=SHE4
XV	S-MART	transcript	400348	401214	.	+	.	seqedit=false;p_id=P5260;gene_id=YOR036W;tss_id=TSS334;nbOverlaps=0;ID=YOR036W;Name=PEP12
XV	S-MART	transcript	401555	402655	.	+	.	seqedit=false;p_id=P5752;gene_id=YOR037W;tss_id=TSS4036;nbOverlaps=0;ID=YOR037W;Name=CYC2
XV	S-MART	transcript	402761	405388	.	-	.	seqedit=false;p_id=P3431;gene_id=YOR038C;tss_id=TSS6882;nbOverlaps=0;ID=YOR038C;Name=HIR2
XV	S-MART	transcript	405768	406544	.	+	.	seqedit=false;p_id=P5141;gene_id=YOR039W;tss_id=TSS1220;nbOverlaps=0;ID=YOR039W;Name=CKB2
XV	S-MART	transcript	407064	407921	.	+	.	seqedit=false;p_id=P2550;gene_id=YOR040W;tss_id=TSS5854;nbOverlaps=0;ID=YOR040W;Name=GLO4
XV	S-MART	transcript	408425	409660	.	+	.	seqedit=false;p_id=P3032;gene_id=YOR042W;tss_id=TSS795;nbOverlaps=0;ID=YOR042W;Name=CUE5
XV	S-MART	transcript	408358	408789	.	-	.	seqedit=false;p_id=P4866;gene_id=YOR041C;tss_id=TSS4143;nbOverlaps=0;ID=YOR041C;Name=YOR041C
XV	S-MART	transcript	410870	412330	.	+	.	seqedit=false;p_id=P6303;gene_id=YOR043W;tss_id=TSS5046;nbOverlaps=0;ID=YOR043W;Name=WHI2
XV	S-MART	transcript	413007	413480	.	+	.	seqedit=false;p_id=P3827;gene_id=YOR044W;tss_id=TSS2449;nbOverlaps=0;ID=YOR044W;Name=IRC23
XV	S-MART	transcript	413852	414037	.	+	.	seqedit=false;p_id=P4993;gene_id=YOR045W;tss_id=TSS1274;nbOverlaps=0;ID=YOR045W;Name=TOM6
XV	S-MART	transcript	414459	415907	.	-	.	seqedit=false;p_id=P5883;gene_id=YOR046C;tss_id=TSS6697;nbOverlaps=0;ID=YOR046C;Name=DBP5
XV	S-MART	transcript	416347	417681	.	-	.	seqedit=false;p_id=P3351;gene_id=YOR047C;tss_id=TSS1493;nbOverlaps=0;ID=YOR047C;Name=STD1
XV	S-MART	transcript	418630	421650	.	-	.	seqedit=false;p_id=P5014;gene_id=YOR048C;tss_id=TSS6737;nbOverlaps=0;ID=YOR048C;Name=RAT1
XV	S-MART	transcript	422668	423732	.	-	.	seqedit=false;p_id=P5424;gene_id=YOR049C;tss_id=TSS5492;nbOverlaps=0;ID=YOR049C;Name=RSB1
XV	S-MART	transcript	424846	426084	.	-	.	seqedit=false;p_id=P5530;gene_id=YOR051C;tss_id=TSS6678;nbOverlaps=0;ID=YOR051C;Name=ETT1
XVI	S-MART	transcript	387067	393654	.	+	.	seqedit=false;p_id=P5081;gene_id=YPL085W;tss_id=TSS5439;nbOverlaps=0;ID=YPL085W;Name=SEC16
XV	S-MART	transcript	424270	424617	.	-	.	seqedit=false;p_id=P24;gene_id=YOR050C;tss_id=TSS4094;nbOverlaps=0;ID=YOR050C;Name=YOR050C
XV	S-MART	transcript	427833	429857	.	-	.	seqedit=false;p_id=P3197;gene_id=YOR054C;tss_id=TSS995;nbOverlaps=0;ID=YOR054C;Name=VHS3
XV	S-MART	transcript	426772	427224	.	-	.	seqedit=false;p_id=P1111;gene_id=YOR052C;tss_id=TSS5452;nbOverlaps=0;ID=YOR052C;Name=YOR052C
XV	S-MART	transcript	427817	428158	.	+	.	seqedit=false;p_id=P2490;gene_id=YOR053W;tss_id=TSS6852;nbOverlaps=0;ID=YOR053W;Name=YOR053W
XVI	S-MART	transcript	310210	312900	.	+	.	seqedit=false;p_id=P2283;gene_id=YPL126W;tss_id=TSS2510;nbOverlaps=0;ID=YPL126W;Name=NAN1
XV	S-MART	transcript	430247	431626	.	-	.	seqedit=false;p_id=P2005;gene_id=YOR056C;tss_id=TSS5644;nbOverlaps=0;ID=YOR056C;Name=NOB1
XV	S-MART	transcript	429478	429912	.	+	.	seqedit=false;p_id=P4168;gene_id=YOR055W;tss_id=TSS3946;nbOverlaps=0;ID=YOR055W;Name=YOR055W
XV	S-MART	transcript	432186	433373	.	+	.	seqedit=false;p_id=P158;gene_id=YOR057W;tss_id=TSS3993;nbOverlaps=0;ID=YOR057W;Name=SGT1
XV	S-MART	transcript	433688	436345	.	-	.	seqedit=false;p_id=P1911;gene_id=YOR058C;tss_id=TSS1693;nbOverlaps=0;ID=YOR058C;Name=ASE1
XV	S-MART	transcript	440390	441163	.	-	.	seqedit=false;p_id=P2872;gene_id=YOR060C;tss_id=TSS1658;nbOverlaps=0;ID=YOR060C;Name=SLD7
XV	S-MART	transcript	438906	440258	.	-	.	seqedit=false;p_id=P5501;gene_id=YOR059C;tss_id=TSS2190;nbOverlaps=0;ID=YOR059C;Name=YOR059C
XV	S-MART	transcript	441534	442553	.	+	.	seqedit=false;p_id=P6013;gene_id=YOR061W;tss_id=TSS3732;nbOverlaps=0;ID=YOR061W;Name=CKA2
XV	S-MART	transcript	444686	445849	.	+	.	seqedit=false;p_id=P2119;gene_id=YOR063W;tss_id=TSS6224;nbOverlaps=0;ID=YOR063W;Name=RPL3
XV	S-MART	transcript	442725	443531	.	-	.	seqedit=false;p_id=P6550;gene_id=YOR062C;tss_id=TSS5890;nbOverlaps=0;ID=YOR062C;Name=YOR062C
XV	S-MART	transcript	446079	446738	.	-	.	seqedit=false;p_id=P2178;gene_id=YOR064C;tss_id=TSS6118;nbOverlaps=0;ID=YOR064C;Name=YNG1
XV	S-MART	transcript	447439	448368	.	+	.	seqedit=false;p_id=P4235;gene_id=YOR065W;tss_id=TSS6813;nbOverlaps=0;ID=YOR065W;Name=CYT1
XV	S-MART	transcript	449436	451325	.	+	.	seqedit=false;p_id=P6055;gene_id=YOR066W;tss_id=TSS4745;nbOverlaps=0;ID=YOR066W;Name=MSA1
XV	S-MART	transcript	451729	453462	.	-	.	seqedit=false;p_id=P6065;gene_id=YOR067C;tss_id=TSS5362;nbOverlaps=0;ID=YOR067C;Name=ALG8
XV	S-MART	transcript	453869	454213	.	-	.	seqedit=false;p_id=P470;gene_id=YOR068C;tss_id=TSS2842;nbOverlaps=0;ID=YOR068C;Name=VAM10
XV	S-MART	transcript	453768	455795	.	+	.	seqedit=false;p_id=P4587;gene_id=YOR069W;tss_id=TSS4064;nbOverlaps=0;ID=YOR069W;Name=VPS5
XV	S-MART	transcript	455907	457820	.	-	.	seqedit=false;p_id=P3604;gene_id=YOR070C;tss_id=TSS382;nbOverlaps=0;ID=YOR070C;Name=GYP1
XV	S-MART	transcript	459480	461276	.	-	.	seqedit=false;p_id=P4787;gene_id=YOR071C;tss_id=TSS4729;nbOverlaps=0;ID=YOR071C;Name=NRT1
XV	S-MART	transcript	461791	462039	.	+	.	seqedit=false;p_id=P3980;gene_id=YOR072W-A;tss_id=TSS35;nbOverlaps=0;ID=YOR072W-A;Name=YOR072W-A
XV	S-MART	transcript	461502	461816	.	+	.	seqedit=false;p_id=P5527;gene_id=YOR072W;tss_id=TSS3967;nbOverlaps=0;ID=YOR072W;Name=YOR072W
XV	S-MART	transcript	464469	464630	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:82:12113:20764#0--HWUSI-EAS1656_0009_FC:3:99:6030:10756#0--HWUSI-EAS1656_000;p_id=P1081;gene_id=YOR072W-B;tss_id=TSS3446;nbOverlaps=2337;ID=YOR072W-B;Name=YOR072W-B
IV	S-MART	transcript	812110	812850	.	+	.	seqedit=false;p_id=P4594;gene_id=YDR174W;tss_id=TSS7047;nbOverlaps=0;ID=YDR174W;Name=HMO1
IV	S-MART	transcript	813193	814152	.	-	.	seqedit=false;p_id=P4698;gene_id=YDR175C;tss_id=TSS3719;nbOverlaps=0;ID=YDR175C;Name=RSM24
IV	S-MART	transcript	814452	816560	.	+	.	seqedit=false;p_id=P4302;gene_id=YDR176W;tss_id=TSS5837;nbOverlaps=0;ID=YDR176W;Name=NGG1
IV	S-MART	transcript	816878	817525	.	+	.	seqedit=false;p_id=P3213;gene_id=YDR177W;tss_id=TSS4735;nbOverlaps=0;ID=YDR177W;Name=UBC1
IV	S-MART	transcript	817950	818495	.	+	.	seqedit=false;p_id=P976;gene_id=YDR178W;tss_id=TSS3651;nbOverlaps=0;ID=YDR178W;Name=SDH4
XVI	S-MART	transcript	384773	386446	.	-	.	seqedit=false;p_id=P1119;gene_id=YPL086C;tss_id=TSS2899;nbOverlaps=0;ID=YPL086C;Name=ELP3
IV	S-MART	transcript	818708	819196	.	-	.	seqedit=false;p_id=P798;gene_id=YDR179C;tss_id=TSS6515;nbOverlaps=0;ID=YDR179C;Name=CSN9
IV	S-MART	transcript	819433	820824	.	+	.	seqedit=false;p_id=P276;gene_id=YDR179W-A;tss_id=TSS3030;nbOverlaps=0;ID=YDR179W-A;Name=YDR179W-A
XVI	S-MART	transcript	850989	856257	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:9121:2269#0--HWUSI-EAS1656_0009_FC:3:96:13349:11886#0--HWUSI-EAS1656_0009;p_id=P958;gene_id=YPR158C-D;tss_id=TSS458;nbOverlaps=331;ID=YPR158C-D;Name=YPR158C-D
XVI	S-MART	exon	850989	854951	.	-	.	ID=YPR158C-D-exon1;Name=YPR158C-D-exon1;Parent=YPR158C-D
XVI	S-MART	exon	854953	856257	.	-	.	ID=YPR158C-D-exon2;Name=YPR158C-D-exon2;Parent=YPR158C-D
IV	S-MART	transcript	821295	825776	.	+	.	seqedit=false;p_id=P2010;gene_id=YDR180W;tss_id=TSS5298;nbOverlaps=0;ID=YDR180W;Name=SCC2
IV	S-MART	transcript	825910	827355	.	-	.	seqedit=false;p_id=P6036;gene_id=YDR181C;tss_id=TSS6682;nbOverlaps=0;ID=YDR181C;Name=SAS4
IV	S-MART	transcript	827582	829057	.	+	.	seqedit=false;p_id=P5162;gene_id=YDR182W;tss_id=TSS3153;nbOverlaps=0;ID=YDR182W;Name=CDC1
IV	S-MART	transcript	829151	829354	.	+	.	seqedit=false;p_id=P3647;gene_id=YDR182W-A;tss_id=TSS1358;nbOverlaps=0;ID=YDR182W-A;Name=YDR182W-A
IV	S-MART	transcript	830397	830654	.	-	.	seqedit=false;p_id=P2014;gene_id=YDR183C-A;tss_id=TSS4979;nbOverlaps=0;ID=YDR183C-A;Name=YDR183C-A
IV	S-MART	transcript	829585	830277	.	+	.	seqedit=false;p_id=P216;gene_id=YDR183W;tss_id=TSS5970;nbOverlaps=0;ID=YDR183W;Name=PLP1
IV	S-MART	transcript	830629	831513	.	-	.	seqedit=false;p_id=P1814;gene_id=YDR184C;tss_id=TSS1631;nbOverlaps=0;ID=YDR184C;Name=ATC1
IV	S-MART	transcript	831934	832473	.	-	.	seqedit=false;p_id=P4540;gene_id=YDR185C;tss_id=TSS202;nbOverlaps=0;ID=YDR185C;Name=UPS3
IV	S-MART	transcript	836421	838061	.	+	.	seqedit=false;p_id=P3472;gene_id=YDR188W;tss_id=TSS4224;nbOverlaps=0;ID=YDR188W;Name=CCT6
IV	S-MART	transcript	832859	835492	.	-	.	seqedit=false;p_id=P2364;gene_id=YDR186C;tss_id=TSS4902;nbOverlaps=0;ID=YDR186C;Name=YDR186C
IV	S-MART	transcript	836228	836746	.	-	.	seqedit=false;p_id=P712;gene_id=YDR187C;tss_id=TSS1824;nbOverlaps=0;ID=YDR187C;Name=YDR187C
IV	S-MART	transcript	838392	840392	.	+	.	seqedit=false;p_id=P5074;gene_id=YDR189W;tss_id=TSS6280;nbOverlaps=0;ID=YDR189W;Name=SLY1
VIII	S-MART	transcript	21783	23540	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:11966:7236#0--HWUSI-EAS1656_0009_FC:3:1:16712:20458#0--HWUSI-EAS1656_0009;p_id=P396;gene_id=YHL039W;tss_id=TSS6733;nbOverlaps=475;ID=YHL039W;Name=EFM1
IV	S-MART	transcript	580687	581784	.	+	.	seqedit=false;p_id=P5632;gene_id=YDR065W;tss_id=TSS3106;nbOverlaps=0;ID=YDR065W;Name=RRG1
IV	S-MART	transcript	840604	841995	.	-	.	seqedit=false;p_id=P3665;gene_id=YDR190C;tss_id=TSS5479;nbOverlaps=0;ID=YDR190C;Name=RVB1
IV	S-MART	transcript	842337	843449	.	+	.	seqedit=false;p_id=P1725;gene_id=YDR191W;tss_id=TSS1735;nbOverlaps=0;ID=YDR191W;Name=HST4
IV	S-MART	transcript	843569	844861	.	-	.	seqedit=false;p_id=P4295;gene_id=YDR192C;tss_id=TSS3468;nbOverlaps=0;ID=YDR192C;Name=NUP42
IV	S-MART	transcript	845952	847946	.	-	.	seqedit=false;p_id=P4626;gene_id=YDR194C;tss_id=TSS4936;nbOverlaps=0;ID=YDR194C;Name=MSS116
IV	S-MART	transcript	844554	844952	.	+	.	seqedit=false;p_id=P4804;gene_id=YDR193W;tss_id=TSS4009;nbOverlaps=0;ID=YDR193W;Name=YDR193W
IV	S-MART	transcript	848071	848223	.	+	.	seqedit=false;p_id=P4317;gene_id=YDR194W-A;tss_id=TSS816;nbOverlaps=0;ID=YDR194W-A;Name=YDR194W-A
IV	S-MART	transcript	581908	582498	.	-	.	seqedit=false;p_id=P3079;gene_id=YDR066C;tss_id=TSS2591;nbOverlaps=0;ID=YDR066C;Name=RTR2
IV	S-MART	transcript	848599	850200	.	+	.	seqedit=false;p_id=P1844;gene_id=YDR195W;tss_id=TSS4492;nbOverlaps=0;ID=YDR195W;Name=REF2
IV	S-MART	transcript	850274	850999	.	-	.	seqedit=false;p_id=P3230;gene_id=YDR196C;tss_id=TSS1586;nbOverlaps=0;ID=YDR196C;Name=CAB5
IV	S-MART	transcript	851228	852397	.	+	.	seqedit=false;p_id=P2292;gene_id=YDR197W;tss_id=TSS5843;nbOverlaps=0;ID=YDR197W;Name=CBS2
IV	S-MART	transcript	852533	853972	.	-	.	seqedit=false;p_id=P344;gene_id=YDR198C;tss_id=TSS2466;nbOverlaps=0;ID=YDR198C;Name=RKM2
IV	S-MART	transcript	854279	856093	.	-	.	seqedit=false;p_id=P6351;gene_id=YDR200C;tss_id=TSS374;nbOverlaps=0;ID=YDR200C;Name=VPS64
IV	S-MART	transcript	854175	854540	.	+	.	seqedit=false;p_id=P4488;gene_id=YDR199W;tss_id=TSS1983;nbOverlaps=0;ID=YDR199W;Name=YDR199W
IV	S-MART	transcript	582791	583465	.	-	.	seqedit=false;p_id=P5975;gene_id=YDR067C;tss_id=TSS354;nbOverlaps=0;ID=YDR067C;Name=OCA6
IV	S-MART	transcript	856317	856814	.	+	.	seqedit=false;p_id=P2930;gene_id=YDR201W;tss_id=TSS2437;nbOverlaps=0;ID=YDR201W;Name=SPC19
IV	S-MART	transcript	856898	857953	.	-	.	seqedit=false;p_id=P744;gene_id=YDR202C;tss_id=TSS3658;nbOverlaps=0;ID=YDR202C;Name=RAV2
IV	S-MART	transcript	858137	859144	.	+	.	seqedit=false;p_id=P3999;gene_id=YDR204W;tss_id=TSS1561;nbOverlaps=0;ID=YDR204W;Name=COQ4
IV	S-MART	transcript	857682	857999	.	+	.	seqedit=false;p_id=P704;gene_id=YDR203W;tss_id=TSS663;nbOverlaps=0;ID=YDR203W;Name=YDR203W
XVI	S-MART	transcript	383455	384408	.	+	.	seqedit=false;p_id=P5258;gene_id=YPL087W;tss_id=TSS1169;nbOverlaps=0;ID=YPL087W;Name=YDC1
IV	S-MART	transcript	859346	861520	.	+	.	seqedit=false;p_id=P5969;gene_id=YDR205W;tss_id=TSS4357;nbOverlaps=0;ID=YDR205W;Name=MSC2
IV	S-MART	transcript	862054	864708	.	+	.	seqedit=false;p_id=P5783;gene_id=YDR206W;tss_id=TSS209;nbOverlaps=0;ID=YDR206W;Name=EBS1
IV	S-MART	transcript	583713	584645	.	+	.	seqedit=false;p_id=P4453;gene_id=YDR068W;tss_id=TSS4102;nbOverlaps=0;ID=YDR068W;Name=DOS2
IV	S-MART	transcript	865012	867522	.	-	.	seqedit=false;p_id=P5809;gene_id=YDR207C;tss_id=TSS2980;nbOverlaps=0;ID=YDR207C;Name=UME6
IV	S-MART	transcript	868224	870563	.	+	.	seqedit=false;p_id=P1745;gene_id=YDR208W;tss_id=TSS5496;nbOverlaps=0;ID=YDR208W;Name=MSS4
IV	S-MART	transcript	882605	883927	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P2316;gene_id=YDR210C-C;tss_id=TSS6823;nbOverlaps=12;ID=YDR210C-C;Name=YDR210C-C
IV	S-MART	transcript	871036	871449	.	-	.	seqedit=false;p_id=P3636;gene_id=YDR209C;tss_id=TSS4121;nbOverlaps=0;ID=YDR209C;Name=YDR209C
IV	S-MART	transcript	878659	883927	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:108:14572:20526#0--HWUSI-EAS1656_00;p_id=P5558;gene_id=YDR210C-D;tss_id=TSS6823;nbOverlaps=13;ID=YDR210C-D;Name=YDR210C-D
IV	S-MART	exon	878659	882621	.	-	.	ID=YDR210C-D-exon1;Name=YDR210C-D-exon1;Parent=YDR210C-D
IV	S-MART	exon	882623	883927	.	-	.	ID=YDR210C-D-exon2;Name=YDR210C-D-exon2;Parent=YDR210C-D
XV	S-MART	transcript	854187	854259	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:14786:6189#0--HWUSI-EAS1656_0009_FC:3:8:11514:18422#0--HWUSI-EAS1656_0009;gene_id=tA(UGC)O;tss_id=TSS4428;nbOverlaps=267;ID=tA(UGC)O;Name=tA(UGC)O
IV	S-MART	transcript	584939	587719	.	-	.	seqedit=false;p_id=P30;gene_id=YDR069C;tss_id=TSS2849;nbOverlaps=0;ID=YDR069C;Name=DOA4
Mito	S-MART	transcript	69846	69921	.	+	.	seqedit=false;gene_id=tA(UGC)Q;tss_id=TSS934;nbOverlaps=0;ID=tA(UGC)Q;Name=tA(UGC)Q
IV	S-MART	transcript	872112	873428	.	+	.	seqedit=false;p_id=P2928;gene_id=YDR210W-A;tss_id=TSS3839;nbOverlaps=0;ID=YDR210W-A;Name=YDR210W-A
IV	S-MART	transcript	871074	871301	.	+	.	seqedit=false;p_id=P5804;gene_id=YDR210W;tss_id=TSS2457;nbOverlaps=0;ID=YDR210W;Name=YDR210W
IV	S-MART	transcript	872112	877425	.	+	.	seqedit=false;p_id=P2568;gene_id=YDR210W-B;tss_id=TSS3839;nbOverlaps=0;ID=YDR210W-B;Name=YDR210W-B
IV	S-MART	exon	872112	873404	.	+	.	ID=YDR210W-B-exon1;Name=YDR210W-B-exon1;Parent=YDR210W-B
IV	S-MART	exon	873406	877425	.	+	.	ID=YDR210W-B-exon2;Name=YDR210W-B-exon2;Parent=YDR210W-B
VII	S-MART	transcript	531610	531681	.	+	.	seqedit=false;gene_id=tD(GUC)G1;tss_id=TSS3720;nbOverlaps=0;ID=tD(GUC)G1;Name=tD(GUC)G1
Mito	S-MART	transcript	64415	64490	.	+	.	seqedit=false;gene_id=tC(GCA)Q;tss_id=TSS3823;nbOverlaps=0;ID=tC(GCA)Q;Name=tC(GCA)Q
VIII	S-MART	transcript	19088	20971	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:4827:19817#0--HWUSI-EAS1656_0009_FC:3:13:9236:7503#0--HWUSI-EAS1656_0009_;p_id=P2764;gene_id=YHL040C;tss_id=TSS568;nbOverlaps=374;ID=YHL040C;Name=ARN1
IV	S-MART	transcript	588098	588379	.	-	.	seqedit=false;p_id=P2638;gene_id=YDR070C;tss_id=TSS595;nbOverlaps=0;ID=YDR070C;Name=FMP16
IV	S-MART	transcript	884727	886865	.	+	.	seqedit=false;p_id=P2228;gene_id=YDR211W;tss_id=TSS4792;nbOverlaps=0;ID=YDR211W;Name=GCD6
IV	S-MART	transcript	887232	888911	.	+	.	seqedit=false;p_id=P1376;gene_id=YDR212W;tss_id=TSS5477;nbOverlaps=0;ID=YDR212W;Name=TCP1
IV	S-MART	transcript	889751	892492	.	+	.	seqedit=false;p_id=P3103;gene_id=YDR213W;tss_id=TSS4269;nbOverlaps=0;ID=YDR213W;Name=UPC2
XVI	S-MART	transcript	885796	886398	.	+	.	seqedit=false;p_id=P6053;gene_id=YPR172W;tss_id=TSS2950;nbOverlaps=0;ID=YPR172W;Name=YPR172W
IV	S-MART	transcript	892875	893927	.	+	.	seqedit=false;p_id=P517;gene_id=YDR214W;tss_id=TSS6156;nbOverlaps=0;ID=YDR214W;Name=AHA1
IV	S-MART	transcript	895035	899006	.	+	.	seqedit=false;p_id=P2389;gene_id=YDR216W;tss_id=TSS4076;nbOverlaps=0;ID=YDR216W;Name=ADR1
IV	S-MART	transcript	894089	894502	.	-	.	seqedit=false;p_id=P3934;gene_id=YDR215C;tss_id=TSS6204;nbOverlaps=0;ID=YDR215C;Name=YDR215C
VIII	S-MART	transcript	442181	443476	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:7550:11316#0--HWUSI-EAS1656_0009_FC:3:107:10465:19871#0--HWUSI-EAS1656_00;p_id=P4544;gene_id=YHR169W;tss_id=TSS6893;nbOverlaps=379;ID=YHR169W;Name=DBP8
IV	S-MART	transcript	899551	903480	.	-	.	seqedit=false;p_id=P270;gene_id=YDR217C;tss_id=TSS6898;nbOverlaps=0;ID=YDR217C;Name=RAD9
IV	S-MART	transcript	903781	905052	.	-	.	seqedit=false;p_id=P2475;gene_id=YDR218C;tss_id=TSS3048;nbOverlaps=0;ID=YDR218C;Name=SPR28
IV	S-MART	transcript	905455	906852	.	-	.	seqedit=false;p_id=P5240;gene_id=YDR219C;tss_id=TSS6032;nbOverlaps=0;ID=YDR219C;Name=MFB1
IV	S-MART	transcript	907330	909438	.	+	.	seqedit=false;p_id=P4588;gene_id=YDR221W;tss_id=TSS4023;nbOverlaps=0;ID=YDR221W;Name=GTB1
IV	S-MART	transcript	907000	907293	.	-	.	seqedit=false;p_id=P1444;gene_id=YDR220C;tss_id=TSS6626;nbOverlaps=0;ID=YDR220C;Name=YDR220C
IV	S-MART	transcript	912099	913502	.	+	.	seqedit=false;p_id=P4338;gene_id=YDR223W;tss_id=TSS215;nbOverlaps=0;ID=YDR223W;Name=CRF1
VIII	S-MART	transcript	443828	445384	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:51:3415:10386#0--HWUSI-EAS1656_0009_FC:3:57:18808:15506#0--HWUSI-EAS1656_000;p_id=P2001;gene_id=YHR170W;tss_id=TSS5185;nbOverlaps=1689;ID=YHR170W;Name=NMD3
IV	S-MART	transcript	910054	911301	.	+	.	seqedit=false;p_id=P4450;gene_id=YDR222W;tss_id=TSS4311;nbOverlaps=0;ID=YDR222W;Name=YDR222W
IV	S-MART	transcript	914317	914712	.	-	.	seqedit=false;p_id=P5118;gene_id=YDR224C;tss_id=TSS117;nbOverlaps=0;ID=YDR224C;Name=HTB1
IX	S-MART	transcript	292633	295737	.	+	.	seqedit=false;p_id=P6455;gene_id=YIL031W;tss_id=TSS2318;nbOverlaps=0;ID=YIL031W;Name=ULP2
IX	S-MART	transcript	290419	291669	.	-	.	seqedit=false;p_id=P3913;gene_id=YIL033C;tss_id=TSS5815;nbOverlaps=0;ID=YIL033C;Name=BCY1
IX	S-MART	transcript	291961	292317	.	-	.	seqedit=false;p_id=P3418;gene_id=YIL032C;tss_id=TSS5697;nbOverlaps=0;ID=YIL032C;Name=YIL032C
IV	S-MART	transcript	592439	592948	.	+	.	seqedit=false;p_id=P1581;gene_id=YDR073W;tss_id=TSS5033;nbOverlaps=0;ID=YDR073W;Name=SNF11
IX	S-MART	transcript	289226	290089	.	-	.	seqedit=false;p_id=P2173;gene_id=YIL034C;tss_id=TSS6664;nbOverlaps=0;ID=YIL034C;Name=CAP2
IX	S-MART	transcript	287790	288908	.	-	.	seqedit=false;p_id=P4031;gene_id=YIL035C;tss_id=TSS1570;nbOverlaps=0;ID=YIL035C;Name=CKA1
IX	S-MART	transcript	285666	287429	.	+	.	seqedit=false;p_id=P5690;gene_id=YIL036W;tss_id=TSS3180;nbOverlaps=0;ID=YIL036W;Name=CST6
IX	S-MART	transcript	283029	284999	.	-	.	seqedit=false;p_id=P1840;gene_id=YIL037C;tss_id=TSS2707;nbOverlaps=0;ID=YIL037C;Name=PRM2
IX	S-MART	transcript	280142	282652	.	-	.	seqedit=false;p_id=P2233;gene_id=YIL038C;tss_id=TSS6633;nbOverlaps=0;ID=YIL038C;Name=NOT3
IX	S-MART	transcript	278426	279847	.	+	.	seqedit=false;p_id=P4660;gene_id=YIL039W;tss_id=TSS6674;nbOverlaps=0;ID=YIL039W;Name=TED1
IV	S-MART	transcript	593893	596583	.	+	.	seqedit=false;p_id=P724;gene_id=YDR074W;tss_id=TSS5467;nbOverlaps=0;ID=YDR074W;Name=TPS2
IX	S-MART	transcript	277723	278139	.	+	.	seqedit=false;p_id=P300;gene_id=YIL040W;tss_id=TSS5511;nbOverlaps=0;ID=YIL040W;Name=APQ12
IX	S-MART	transcript	276525	277505	.	+	.	seqedit=false;p_id=P4321;gene_id=YIL041W;tss_id=TSS6273;nbOverlaps=0;ID=YIL041W;Name=GVP36
IX	S-MART	transcript	275108	276292	.	-	.	seqedit=false;p_id=P2307;gene_id=YIL042C;tss_id=TSS4346;nbOverlaps=0;ID=YIL042C;Name=PKP1
IX	S-MART	transcript	274072	274926	.	-	.	seqedit=false;p_id=P6054;gene_id=YIL043C;tss_id=TSS3379;nbOverlaps=0;ID=YIL043C;Name=CBR1
IX	S-MART	transcript	272950	273846	.	-	.	seqedit=false;p_id=P2156;gene_id=YIL044C;tss_id=TSS5342;nbOverlaps=0;ID=YIL044C;Name=AGE2
IX	S-MART	transcript	271161	272777	.	+	.	seqedit=false;p_id=P5977;gene_id=YIL045W;tss_id=TSS851;nbOverlaps=0;ID=YIL045W;Name=PIG2
VIII	S-MART	transcript	14901	15413	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:2633:20140#0--HWUSI-EAS1656_0009_FC:3:23:16969:15586#0--HWUSI-EAS1656_000;p_id=P5375;gene_id=YHL043W;tss_id=TSS4908;nbOverlaps=9;ID=YHL043W;Name=ECM34
IV	S-MART	transcript	597156	598082	.	+	.	seqedit=false;p_id=P1334;gene_id=YDR075W;tss_id=TSS1657;nbOverlaps=0;ID=YDR075W;Name=PPH3
IX	S-MART	transcript	268651	270573	.	+	.	seqedit=false;p_id=P2073;gene_id=YIL046W;tss_id=TSS4386;nbOverlaps=0;ID=YIL046W;Name=MET30
IX	S-MART	transcript	268309	268473	.	+	.	seqedit=false;p_id=P2668;gene_id=YIL046W-A;tss_id=TSS5357;nbOverlaps=0;ID=YIL046W-A;Name=YIL046W-A
IX	S-MART	transcript	265115	267823	.	-	.	seqedit=false;p_id=P5697;gene_id=YIL047C;tss_id=TSS935;nbOverlaps=0;ID=YIL047C;Name=SYG1
IX	S-MART	transcript	265099	265467	.	-	.	seqedit=false;p_id=P1073;gene_id=YIL047C-A;tss_id=TSS2911;nbOverlaps=0;ID=YIL047C-A;Name=YIL047C-A
IX	S-MART	transcript	261437	264892	.	+	.	seqedit=false;p_id=P4329;gene_id=YIL048W;tss_id=TSS5638;nbOverlaps=0;ID=YIL048W;Name=NEO1
IX	S-MART	transcript	260158	260919	.	+	.	seqedit=false;p_id=P4786;gene_id=YIL049W;tss_id=TSS5277;nbOverlaps=0;ID=YIL049W;Name=DFG10
IV	S-MART	transcript	598468	599688	.	+	.	seqedit=false;p_id=P1771;gene_id=YDR076W;tss_id=TSS1092;nbOverlaps=0;ID=YDR076W;Name=RAD55
IX	S-MART	transcript	258913	259770	.	+	.	seqedit=false;p_id=P6547;gene_id=YIL050W;tss_id=TSS5768;nbOverlaps=0;ID=YIL050W;Name=PCL7
IX	S-MART	transcript	257843	258280	.	-	.	seqedit=false;p_id=P1899;gene_id=YIL051C;tss_id=TSS56;nbOverlaps=0;ID=YIL051C;Name=MMF1
IX	S-MART	transcript	256226	257063	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:5059:2562#0--HWUSI-EAS1656_0009_FC:3:30:10821:1058#0--HWUSI-EAS1656_0009_;p_id=P5936;gene_id=YIL052C;tss_id=TSS4324;nbOverlaps=111;ID=YIL052C;Name=RPL34B
IX	S-MART	exon	256226	256554	.	-	.	ID=YIL052C-exon1;Name=RPL34B-exon1;Parent=YIL052C
IX	S-MART	exon	257027	257063	.	-	.	ID=YIL052C-exon2;Name=RPL34B-exon2;Parent=YIL052C
VIII	S-MART	transcript	237848	237939	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:67:15428:10838#0--HWUSI-EAS1656_000;gene_id=tF(GAA)H1;tss_id=TSS5841;nbOverlaps=263;ID=tF(GAA)H1;Name=tF(GAA)H1
VIII	S-MART	exon	237848	237883	.	-	.	ID=tF(GAA)H1-exon1;Name=tF(GAA)H1-exon1;Parent=tF(GAA)H1
VIII	S-MART	exon	237903	237939	.	-	.	ID=tF(GAA)H1-exon2;Name=tF(GAA)H1-exon2;Parent=tF(GAA)H1
IX	S-MART	transcript	255115	255867	.	+	.	seqedit=false;p_id=P6401;gene_id=YIL053W;tss_id=TSS6057;nbOverlaps=0;ID=YIL053W;Name=RHR2
IV	S-MART	transcript	600793	601809	.	+	.	seqedit=false;p_id=P7;gene_id=YDR077W;tss_id=TSS5748;nbOverlaps=0;ID=YDR077W;Name=SED1
IX	S-MART	transcript	249991	251913	.	+	.	seqedit=false;p_id=P4474;gene_id=YIL056W;tss_id=TSS4866;nbOverlaps=0;ID=YIL056W;Name=VHR1
IX	S-MART	transcript	254543	254860	.	+	.	seqedit=false;p_id=P3620;gene_id=YIL054W;tss_id=TSS3166;nbOverlaps=0;ID=YIL054W;Name=YIL054W
IX	S-MART	transcript	252042	253925	.	-	.	seqedit=false;p_id=P986;gene_id=YIL055C;tss_id=TSS6858;nbOverlaps=0;ID=YIL055C;Name=YIL055C
IX	S-MART	transcript	247902	248396	.	-	.	seqedit=false;p_id=P4481;gene_id=YIL057C;tss_id=TSS1175;nbOverlaps=0;ID=YIL057C;Name=RGI2
XVI	S-MART	transcript	381965	382993	.	+	.	seqedit=false;p_id=P6070;gene_id=YPL088W;tss_id=TSS3078;nbOverlaps=0;ID=YPL088W;Name=YPL088W
IX	S-MART	transcript	244657	245559	.	-	.	seqedit=false;p_id=P5398;gene_id=YIL061C;tss_id=TSS6871;nbOverlaps=0;ID=YIL061C;Name=SNP1
IX	S-MART	transcript	246914	247198	.	+	.	seqedit=false;p_id=P5263;gene_id=YIL058W;tss_id=TSS462;nbOverlaps=0;ID=YIL058W;Name=YIL058W
IV	S-MART	transcript	602198	602869	.	-	.	seqedit=false;p_id=P1650;gene_id=YDR078C;tss_id=TSS5048;nbOverlaps=0;ID=YDR078C;Name=SHU2
IX	S-MART	transcript	246550	246915	.	-	.	seqedit=false;p_id=P4754;gene_id=YIL059C;tss_id=TSS1578;nbOverlaps=0;ID=YIL059C;Name=YIL059C
XVI	S-MART	transcript	139620	143171	.	-	.	seqedit=false;p_id=P5536;gene_id=YPL217C;tss_id=TSS1363;nbOverlaps=0;ID=YPL217C;Name=BMS1
IX	S-MART	transcript	246392	246826	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:18249:7755#0;p_id=P1488;gene_id=YIL060W;tss_id=TSS2608;nbOverlaps=1;ID=YIL060W;Name=YIL060W
IX	S-MART	transcript	243998	244462	.	-	.	seqedit=false;p_id=P5845;gene_id=YIL062C;tss_id=TSS3385;nbOverlaps=0;ID=YIL062C;Name=ARC15
IX	S-MART	transcript	242761	243744	.	-	.	seqedit=false;p_id=P1704;gene_id=YIL063C;tss_id=TSS4810;nbOverlaps=0;ID=YIL063C;Name=YRB2
IX	S-MART	transcript	241943	242716	.	+	.	seqedit=false;p_id=P1807;gene_id=YIL064W;tss_id=TSS627;nbOverlaps=0;ID=YIL064W;Name=SEE1
IX	S-MART	transcript	241308	241775	.	-	.	seqedit=false;p_id=P3474;gene_id=YIL065C;tss_id=TSS5750;nbOverlaps=0;ID=YIL065C;Name=FIS1
IV	S-MART	transcript	603593	603811	.	-	.	seqedit=false;p_id=P3638;gene_id=YDR079C-A;tss_id=TSS2444;nbOverlaps=0;ID=YDR079C-A;Name=TFB5
IX	S-MART	transcript	238099	240708	.	-	.	seqedit=false;p_id=P1080;gene_id=YIL066C;tss_id=TSS3382;nbOverlaps=0;ID=YIL066C;Name=RNR3
IX	S-MART	transcript	237366	237809	.	+	.	seqedit=false;p_id=P3360;gene_id=YIL066W-A;tss_id=TSS4781;nbOverlaps=0;ID=YIL066W-A;Name=YIL066W-A
IX	S-MART	transcript	233057	235474	.	-	.	seqedit=false;p_id=P3818;gene_id=YIL068C;tss_id=TSS399;nbOverlaps=0;ID=YIL068C;Name=SEC6
IX	S-MART	transcript	235724	237760	.	-	.	seqedit=false;p_id=P1567;gene_id=YIL067C;tss_id=TSS111;nbOverlaps=0;ID=YIL067C;Name=YIL067C
IX	S-MART	transcript	233013	233396	.	+	.	seqedit=false;p_id=P4827;gene_id=YIL068W-A;tss_id=TSS1909;nbOverlaps=0;ID=YIL068W-A;Name=YIL068W-A
IX	S-MART	transcript	231553	232369	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:9848:8694#0--HWUSI-EAS1656_0009_FC:3:59:4899:7004#0--HWUSI-EAS1656_0009_;p_id=P1695;gene_id=YIL069C;tss_id=TSS2726;nbOverlaps=732;ID=YIL069C;Name=RPS24B
IX	S-MART	exon	231553	231957	.	-	.	ID=YIL069C-exon1;Name=RPS24B-exon1;Parent=YIL069C
IX	S-MART	exon	232367	232369	.	-	.	ID=YIL069C-exon2;Name=RPS24B-exon2;Parent=YIL069C
VIII	S-MART	transcript	17392	17841	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:60:13263:8054#0;p_id=P637;gene_id=YHL041W;tss_id=TSS2826;nbOverlaps=1;ID=YHL041W;Name=YHL041W
IV	S-MART	transcript	603064	603399	.	+	.	seqedit=false;p_id=P2665;gene_id=YDR079W;tss_id=TSS228;nbOverlaps=0;ID=YDR079W;Name=PET100
IX	S-MART	transcript	230272	231072	.	-	.	seqedit=false;p_id=P3798;gene_id=YIL070C;tss_id=TSS3040;nbOverlaps=0;ID=YIL070C;Name=MAM33
IX	S-MART	transcript	228660	229994	.	-	.	seqedit=false;p_id=P2750;gene_id=YIL071C;tss_id=TSS4303;nbOverlaps=0;ID=YIL071C;Name=PCI8
VII	S-MART	transcript	649598	650617	.	-	.	seqedit=false;p_id=P2828;gene_id=YGR086C;tss_id=TSS5932;nbOverlaps=0;ID=YGR086C;Name=PIL1
IX	S-MART	transcript	228550	229026	.	+	.	seqedit=false;p_id=P5742;gene_id=YIL071W-A;tss_id=TSS4956;nbOverlaps=0;ID=YIL071W-A;Name=YIL071W-A
IX	S-MART	transcript	226602	228419	.	+	.	seqedit=false;p_id=P3737;gene_id=YIL072W;tss_id=TSS3657;nbOverlaps=0;ID=YIL072W;Name=HOP1
IV	S-MART	transcript	604008	606986	.	+	.	seqedit=false;p_id=P587;gene_id=YDR080W;tss_id=TSS4858;nbOverlaps=0;ID=YDR080W;Name=VPS41
IX	S-MART	transcript	222937	225954	.	-	.	seqedit=false;p_id=P6360;gene_id=YIL073C;tss_id=TSS5065;nbOverlaps=0;ID=YIL073C;Name=SPO22
IX	S-MART	exon	222937	225809	.	-	.	ID=YIL073C-exon1;Name=SPO22-exon1;Parent=YIL073C
IX	S-MART	exon	225900	225954	.	-	.	ID=YIL073C-exon2;Name=SPO22-exon2;Parent=YIL073C
IX	S-MART	transcript	221081	222490	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:113:8621:16443#0--HWUSI-EAS1656_0009_FC:3:44:9345:5948#0--HWUSI-EAS1656_0009;p_id=P4339;gene_id=YIL074C;tss_id=TSS3260;nbOverlaps=60;ID=YIL074C;Name=SER33
IX	S-MART	transcript	217863	220700	.	-	.	seqedit=false;p_id=P442;gene_id=YIL075C;tss_id=TSS3622;nbOverlaps=0;ID=YIL075C;Name=RPN2
IX	S-MART	transcript	216658	217548	.	+	.	seqedit=false;p_id=P5956;gene_id=YIL076W;tss_id=TSS1989;nbOverlaps=0;ID=YIL076W;Name=SEC28
IV	S-MART	transcript	607304	610081	.	-	.	seqedit=false;p_id=P5259;gene_id=YDR081C;tss_id=TSS1400;nbOverlaps=0;ID=YDR081C;Name=PDC2
IX	S-MART	transcript	212499	214703	.	+	.	seqedit=false;p_id=P5797;gene_id=YIL078W;tss_id=TSS6492;nbOverlaps=0;ID=YIL078W;Name=THS1
IX	S-MART	transcript	214991	215953	.	-	.	seqedit=false;p_id=P2238;gene_id=YIL077C;tss_id=TSS5650;nbOverlaps=0;ID=YIL077C;Name=YIL077C
IX	S-MART	transcript	210923	212005	.	-	.	seqedit=false;p_id=P1317;gene_id=YIL079C;tss_id=TSS4629;nbOverlaps=0;ID=YIL079C;Name=AIR1
X	S-MART	transcript	84068	85336	.	+	.	seqedit=false;p_id=P1702;gene_id=YJL183W;tss_id=TSS1638;nbOverlaps=0;ID=YJL183W;Name=MNN11
XVI	S-MART	transcript	377291	378395	.	-	.	seqedit=false;p_id=P3603;gene_id=YPL090C;tss_id=TSS578;nbOverlaps=0;ID=YPL090C;Name=RPS6A
XVI	S-MART	exon	377291	377995	.	-	.	ID=YPL090C-exon1;Name=RPS6A-exon1;Parent=YPL090C
XVI	S-MART	exon	378390	378395	.	-	.	ID=YPL090C-exon2;Name=RPS6A-exon2;Parent=YPL090C
IX	S-MART	transcript	205635	210357	.	+	.	seqedit=false;gene_id=YIL080W;tss_id=TSS169;nbOverlaps=0;ID=YIL080W;Name=YIL080W
IX	S-MART	exon	205635	206484	.	+	.	ID=YIL080W-exon1;Name=YIL080W-exon1;Parent=YIL080W
IX	S-MART	exon	206486	210357	.	+	.	ID=YIL080W-exon2;Name=YIL080W-exon2;Parent=YIL080W
IV	S-MART	transcript	610441	611925	.	+	.	seqedit=false;p_id=P1114;gene_id=YDR082W;tss_id=TSS6643;nbOverlaps=0;ID=YDR082W;Name=STN1
XVI	S-MART	transcript	143821	147129	.	+	.	seqedit=false;p_id=P1288;gene_id=YPL216W;tss_id=TSS4061;nbOverlaps=0;ID=YPL216W;Name=YPL216W
XVI	S-MART	transcript	308828	309604	.	-	.	seqedit=false;p_id=P5551;gene_id=YPL127C;tss_id=TSS1770;nbOverlaps=0;ID=YPL127C;Name=HHO1
IV	S-MART	transcript	612073	613251	.	+	.	seqedit=false;p_id=P4533;gene_id=YDR083W;tss_id=TSS276;nbOverlaps=0;ID=YDR083W;Name=RRP8
VIII	S-MART	transcript	15667	16119	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:16327:7972#0--HWUSI-EAS1656_0009_FC:3:10:6115:16650#0--HWUSI-EAS1656_000;p_id=P1010;gene_id=YHL042W;tss_id=TSS1606;nbOverlaps=10;ID=YHL042W;Name=YHL042W
IV	S-MART	transcript	613405	614004	.	-	.	seqedit=false;p_id=P483;gene_id=YDR084C;tss_id=TSS255;nbOverlaps=0;ID=YDR084C;Name=TVP23
IV	S-MART	transcript	614288	616150	.	-	.	seqedit=false;p_id=P697;gene_id=YDR085C;tss_id=TSS5476;nbOverlaps=0;ID=YDR085C;Name=AFR1
XVI	S-MART	transcript	203306	203689	.	-	.	seqedit=false;p_id=P1303;gene_id=YPL182C;tss_id=TSS2650;nbOverlaps=0;ID=YPL182C;Name=YPL182C
VIII	S-MART	transcript	470939	471412	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:3668:10253#0--HWUSI-EAS1656_0009_FC:3:24:19051:7371#0--HWUSI-EAS1656_0009;p_id=P1170;gene_id=YHR182C-A;tss_id=TSS6495;nbOverlaps=1689;ID=YHR182C-A;Name=YHR182C-A
VIII	S-MART	transcript	470960	472429	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:3668:10253#0--HWUSI-EAS1656_0009_FC:3:25:18254:15499#0--HWUSI-EAS1656_000;p_id=P1350;gene_id=YHR183W;tss_id=TSS4177;nbOverlaps=7178;ID=YHR183W;Name=GND1
XVI	S-MART	transcript	138698	139409	.	+	.	seqedit=false;p_id=P287;gene_id=YPL218W;tss_id=TSS601;nbOverlaps=0;ID=YPL218W;Name=SAR1
XVI	S-MART	exon	138698	138725	.	+	.	ID=YPL218W-exon1;Name=SAR1-exon1;Parent=YPL218W
XVI	S-MART	exon	138865	139409	.	+	.	ID=YPL218W-exon2;Name=SAR1-exon2;Parent=YPL218W
XII	S-MART	transcript	390954	391331	.	-	.	seqedit=false;p_id=P4753;gene_id=YLR122C;tss_id=TSS1176;nbOverlaps=0;ID=YLR122C;Name=YLR122C
IV	S-MART	transcript	618497	619645	.	-	.	seqedit=false;p_id=P2871;gene_id=YDR088C;tss_id=TSS1806;nbOverlaps=0;ID=YDR088C;Name=SLU7
VIII	S-MART	transcript	472744	474459	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:92:11078:10601#0--HWUSI-EAS1656_0009_FC:3:56:19655:6172#0--HWUSI-EAS1656_000;p_id=P1169;gene_id=YHR184W;tss_id=TSS4776;nbOverlaps=6;ID=YHR184W;Name=SSP1
XVI	S-MART	transcript	43283	44344	.	-	.	seqedit=false;p_id=P3476;gene_id=YPL264C;tss_id=TSS3773;nbOverlaps=0;ID=YPL264C;Name=YPL264C
IV	S-MART	transcript	622112	624721	.	+	.	seqedit=false;p_id=P4284;gene_id=YDR089W;tss_id=TSS1805;nbOverlaps=0;ID=YDR089W;Name=YDR089W
IV	S-MART	transcript	625066	625998	.	-	.	seqedit=false;p_id=P2042;gene_id=YDR090C;tss_id=TSS3035;nbOverlaps=0;ID=YDR090C;Name=YDR090C
IV	S-MART	transcript	629876	630605	.	+	.	seqedit=false;p_id=P5532;gene_id=YDR092W;tss_id=TSS5943;nbOverlaps=0;ID=YDR092W;Name=UBC13
IV	S-MART	exon	629876	629905	.	+	.	ID=YDR092W-exon1;Name=UBC13-exon1;Parent=YDR092W
IV	S-MART	exon	630174	630605	.	+	.	ID=YDR092W-exon2;Name=UBC13-exon2;Parent=YDR092W
XII	S-MART	transcript	161755	163893	.	-	.	seqedit=false;p_id=P5277;gene_id=YLR006C;tss_id=TSS6060;nbOverlaps=0;ID=YLR006C;Name=SSK1
XVI	S-MART	transcript	888974	891043	.	+	.	seqedit=false;p_id=P4859;gene_id=YPR175W;tss_id=TSS4234;nbOverlaps=0;ID=YPR175W;Name=DPB2
XII	S-MART	transcript	164392	165402	.	+	.	seqedit=false;p_id=P324;gene_id=YLR007W;tss_id=TSS3761;nbOverlaps=0;ID=YLR007W;Name=NSE1
XII	S-MART	transcript	165577	166083	.	-	.	seqedit=false;p_id=P5750;gene_id=YLR008C;tss_id=TSS6721;nbOverlaps=0;ID=YLR008C;Name=PAM18
XII	S-MART	transcript	166537	167136	.	+	.	seqedit=false;p_id=P4836;gene_id=YLR009W;tss_id=TSS5785;nbOverlaps=0;ID=YLR009W;Name=RLP24
XII	S-MART	transcript	167320	167802	.	-	.	seqedit=false;p_id=P2239;gene_id=YLR010C;tss_id=TSS6414;nbOverlaps=0;ID=YLR010C;Name=TEN1
XII	S-MART	transcript	169103	169678	.	+	.	seqedit=false;p_id=P2703;gene_id=YLR011W;tss_id=TSS2500;nbOverlaps=0;ID=YLR011W;Name=LOT6
XII	S-MART	transcript	171339	171764	.	+	.	seqedit=false;p_id=P610;gene_id=YLR013W;tss_id=TSS5374;nbOverlaps=0;ID=YLR013W;Name=GAT3
XVI	S-MART	transcript	888043	888708	.	-	.	seqedit=false;p_id=P2063;gene_id=YPR174C;tss_id=TSS1028;nbOverlaps=0;ID=YPR174C;Name=YPR174C
XII	S-MART	transcript	169982	170281	.	-	.	seqedit=false;p_id=P120;gene_id=YLR012C;tss_id=TSS160;nbOverlaps=0;ID=YLR012C;Name=YLR012C
XII	S-MART	transcript	172268	174982	.	-	.	seqedit=false;p_id=P1592;gene_id=YLR014C;tss_id=TSS6246;nbOverlaps=0;ID=YLR014C;Name=PPR1
XII	S-MART	transcript	175227	176744	.	+	.	seqedit=false;p_id=P1915;gene_id=YLR015W;tss_id=TSS7052;nbOverlaps=0;ID=YLR015W;Name=BRE2
XII	S-MART	transcript	176802	177416	.	-	.	seqedit=false;p_id=P4504;gene_id=YLR016C;tss_id=TSS2816;nbOverlaps=0;ID=YLR016C;Name=PML1
XII	S-MART	transcript	177608	178621	.	+	.	seqedit=false;p_id=P6312;gene_id=YLR017W;tss_id=TSS4706;nbOverlaps=0;ID=YLR017W;Name=MEU1
XII	S-MART	transcript	178707	179606	.	-	.	seqedit=false;p_id=P2140;gene_id=YLR018C;tss_id=TSS5490;nbOverlaps=0;ID=YLR018C;Name=POM34
VIII	S-MART	transcript	484845	486179	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:9137:17776#0--HWUSI-EAS1656_0009_FC:3:10:13153:20276#0--HWUSI-EAS1656_000;p_id=P2321;gene_id=YHR190W;tss_id=TSS3597;nbOverlaps=704;ID=YHR190W;Name=ERG9
XII	S-MART	transcript	180288	181481	.	+	.	seqedit=false;p_id=P4489;gene_id=YLR019W;tss_id=TSS3240;nbOverlaps=0;ID=YLR019W;Name=PSR2
XII	S-MART	transcript	181789	183405	.	-	.	seqedit=false;p_id=P1467;gene_id=YLR020C;tss_id=TSS2652;nbOverlaps=0;ID=YLR020C;Name=YEH2
XII	S-MART	transcript	183623	184162	.	+	.	seqedit=false;p_id=P1837;gene_id=YLR021W;tss_id=TSS5139;nbOverlaps=0;ID=YLR021W;Name=IRC25
XII	S-MART	transcript	184174	184926	.	-	.	seqedit=false;p_id=P1385;gene_id=YLR022C;tss_id=TSS587;nbOverlaps=0;ID=YLR022C;Name=SDO1
XII	S-MART	transcript	185498	187129	.	-	.	seqedit=false;p_id=P1236;gene_id=YLR023C;tss_id=TSS143;nbOverlaps=0;ID=YLR023C;Name=IZH3
XII	S-MART	transcript	187663	193281	.	-	.	seqedit=false;p_id=P3478;gene_id=YLR024C;tss_id=TSS896;nbOverlaps=0;ID=YLR024C;Name=UBR2
VIII	S-MART	transcript	486230	486631	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:5063:18504#0--HWUSI-EAS1656_0009_FC:3:92:12512:7125#0--HWUSI-EAS1656_000;p_id=P5829;gene_id=YHR191C;tss_id=TSS87;nbOverlaps=76;ID=YHR191C;Name=CTF8
XII	S-MART	transcript	194452	195174	.	+	.	seqedit=false;p_id=P5357;gene_id=YLR025W;tss_id=TSS5059;nbOverlaps=0;ID=YLR025W;Name=SNF7
XII	S-MART	transcript	195450	196472	.	-	.	seqedit=false;p_id=P6650;gene_id=YLR026C;tss_id=TSS5153;nbOverlaps=0;ID=YLR026C;Name=SED5
XII	S-MART	transcript	196829	198085	.	-	.	seqedit=false;p_id=P2816;gene_id=YLR027C;tss_id=TSS5502;nbOverlaps=0;ID=YLR027C;Name=AAT2
XII	S-MART	transcript	199540	201315	.	-	.	seqedit=false;p_id=P2996;gene_id=YLR028C;tss_id=TSS2768;nbOverlaps=0;ID=YLR028C;Name=ADE16
XVI	S-MART	transcript	375502	376953	.	+	.	seqedit=false;p_id=P6068;gene_id=YPL091W;tss_id=TSS5601;nbOverlaps=0;ID=YPL091W;Name=GLR1
XII	S-MART	transcript	201976	202590	.	-	.	seqedit=false;p_id=P6315;gene_id=YLR029C;tss_id=TSS5199;nbOverlaps=0;ID=YLR029C;Name=RPL15A
XII	S-MART	transcript	204991	208500	.	+	.	seqedit=false;p_id=P4519;gene_id=YLR032W;tss_id=TSS2643;nbOverlaps=0;ID=YLR032W;Name=RAD5
VIII	S-MART	transcript	487712	488236	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:29:17852:18264#0--HWUSI-EAS1656_0009_FC:3:59:1446:19658#0--HWUSI-EAS1656_000;p_id=P6209;gene_id=YHR193C;tss_id=TSS4174;nbOverlaps=1298;ID=YHR193C;Name=EGD2
XII	S-MART	transcript	203290	204081	.	+	.	seqedit=false;p_id=P2457;gene_id=YLR030W;tss_id=TSS4186;nbOverlaps=0;ID=YLR030W;Name=YLR030W
XII	S-MART	transcript	204225	204785	.	+	.	seqedit=false;p_id=P5775;gene_id=YLR031W;tss_id=TSS1054;nbOverlaps=0;ID=YLR031W;Name=YLR031W
XII	S-MART	transcript	208761	210269	.	+	.	seqedit=false;p_id=P5760;gene_id=YLR033W;tss_id=TSS1897;nbOverlaps=0;ID=YLR033W;Name=RSC58
XII	S-MART	transcript	210512	211933	.	-	.	seqedit=false;p_id=P3734;gene_id=YLR034C;tss_id=TSS3604;nbOverlaps=0;ID=YLR034C;Name=SMF3
XII	S-MART	transcript	212369	214456	.	-	.	seqedit=false;p_id=P220;gene_id=YLR035C;tss_id=TSS2415;nbOverlaps=0;ID=YLR035C;Name=MLH2
XII	S-MART	transcript	215440	218907	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P2905;gene_id=YLR035C-A;tss_id=TSS168;nbOverlaps=526;ID=YLR035C-A;Name=YLR035C-A
VIII	S-MART	transcript	486826	487662	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:17844:2919#0--HWUSI-EAS1656_0009_FC:3:29:17203:6422#0--HWUSI-EAS1656_0009;p_id=P2861;gene_id=YHR192W;tss_id=TSS6895;nbOverlaps=185;ID=YHR192W;Name=YHR192W
XII	S-MART	transcript	222685	223059	.	-	.	seqedit=false;p_id=P983;gene_id=YLR037C;tss_id=TSS6727;nbOverlaps=0;ID=YLR037C;Name=PAU23
XII	S-MART	transcript	221521	222132	.	-	.	seqedit=false;p_id=P6132;gene_id=YLR036C;tss_id=TSS5037;nbOverlaps=0;ID=YLR036C;Name=YLR036C
XII	S-MART	transcript	224921	225172	.	-	.	seqedit=false;p_id=P1414;gene_id=YLR038C;tss_id=TSS3753;nbOverlaps=0;ID=YLR038C;Name=COX12
XII	S-MART	transcript	225426	228596	.	-	.	seqedit=false;p_id=P5609;gene_id=YLR039C;tss_id=TSS2585;nbOverlaps=0;ID=YLR039C;Name=RIC1
XII	S-MART	transcript	231702	232013	.	-	.	seqedit=false;p_id=P5714;gene_id=YLR043C;tss_id=TSS1148;nbOverlaps=0;ID=YLR043C;Name=TRX1
XII	S-MART	transcript	228908	229582	.	-	.	seqedit=false;p_id=P2557;gene_id=YLR040C;tss_id=TSS6390;nbOverlaps=0;ID=YLR040C;Name=YLR040C
VIII	S-MART	transcript	488653	489027	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:9340:17740#0--HWUSI-EAS1656_0009_FC:3:86:9224:17066#0--HWUSI-EAS1656_0009;p_id=P5651;gene_id=YHR193C-A;tss_id=TSS5514;nbOverlaps=16;ID=YHR193C-A;Name=YHR193C-A
XII	S-MART	transcript	229377	229697	.	+	.	seqedit=false;p_id=P3830;gene_id=YLR041W;tss_id=TSS4206;nbOverlaps=0;ID=YLR041W;Name=YLR041W
XII	S-MART	transcript	229966	230451	.	-	.	seqedit=false;p_id=P781;gene_id=YLR042C;tss_id=TSS5773;nbOverlaps=0;ID=YLR042C;Name=YLR042C
XII	S-MART	transcript	232390	234081	.	-	.	seqedit=false;p_id=P2813;gene_id=YLR044C;tss_id=TSS6257;nbOverlaps=0;ID=YLR044C;Name=PDC1
XII	S-MART	transcript	235037	237703	.	-	.	seqedit=false;p_id=P3814;gene_id=YLR045C;tss_id=TSS523;nbOverlaps=0;ID=YLR045C;Name=STU2
XII	S-MART	transcript	239347	241407	.	-	.	seqedit=false;p_id=P946;gene_id=YLR047C;tss_id=TSS7069;nbOverlaps=0;ID=YLR047C;Name=FRE8
XII	S-MART	transcript	238001	238813	.	-	.	seqedit=false;p_id=P2225;gene_id=YLR046C;tss_id=TSS6397;nbOverlaps=0;ID=YLR046C;Name=YLR046C
VIII	S-MART	transcript	488657	490396	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:56:7668:21208#0--HWUSI-EAS1656_0009_FC:3:6:13073:2538#0--HWUSI-EAS1656_0009_;p_id=P5191;gene_id=YHR194W;tss_id=TSS2426;nbOverlaps=124;ID=YHR194W;Name=MDM31
XII	S-MART	transcript	242232	243349	.	+	.	seqedit=false;p_id=P2565;gene_id=YLR048W;tss_id=TSS116;nbOverlaps=0;ID=YLR048W;Name=RPS0B
XII	S-MART	exon	242232	242321	.	+	.	ID=YLR048W-exon1;Name=RPS0B-exon1;Parent=YLR048W
XII	S-MART	exon	242681	243349	.	+	.	ID=YLR048W-exon2;Name=RPS0B-exon2;Parent=YLR048W
V	S-MART	transcript	288443	288524	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:6969:5946#0--HWUSI-EAS1656_0009_FC:3:61:10124:4226#0--HWUSI-EAS1656_0009;gene_id=tS(UGA)E;tss_id=TSS6730;nbOverlaps=57;ID=tS(UGA)E;Name=SUP19
IX	S-MART	transcript	248850	248931	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:6969:5946#0--HWUSI-EAS1656_0009_FC:3:61:10124:4226#0--HWUSI-EAS1656_0009;gene_id=tS(UGA)I;tss_id=TSS2074;nbOverlaps=36;ID=tS(UGA)I;Name=SUP17
XII	S-MART	transcript	246324	246977	.	-	.	seqedit=false;p_id=P3951;gene_id=YLR051C;tss_id=TSS5322;nbOverlaps=0;ID=YLR051C;Name=FCF2
XII	S-MART	transcript	243886	245172	.	-	.	seqedit=false;p_id=P4697;gene_id=YLR049C;tss_id=TSS4606;nbOverlaps=0;ID=YLR049C;Name=YLR049C
XII	S-MART	transcript	245587	246072	.	-	.	seqedit=false;p_id=P2835;gene_id=YLR050C;tss_id=TSS259;nbOverlaps=0;ID=YLR050C;Name=YLR050C
IV	S-MART	transcript	649804	651126	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009;p_id=P1798;gene_id=YDR098C-A;tss_id=TSS5266;nbOverlaps=13;ID=YDR098C-A;Name=YDR098C-A
XII	S-MART	transcript	247201	247953	.	+	.	seqedit=false;p_id=P1229;gene_id=YLR052W;tss_id=TSS2709;nbOverlaps=0;ID=YLR052W;Name=IES3
XII	S-MART	transcript	248717	250978	.	-	.	seqedit=false;p_id=P4620;gene_id=YLR054C;tss_id=TSS4157;nbOverlaps=0;ID=YLR054C;Name=OSW2
XII	S-MART	exon	248717	250860	.	-	.	ID=YLR054C-exon1;Name=OSW2-exon1;Parent=YLR054C
XII	S-MART	exon	250948	250978	.	-	.	ID=YLR054C-exon2;Name=OSW2-exon2;Parent=YLR054C
XII	S-MART	transcript	248100	248426	.	-	.	seqedit=false;p_id=P6555;gene_id=YLR053C;tss_id=TSS695;nbOverlaps=0;ID=YLR053C;Name=YLR053C
VIII	S-MART	transcript	116107	116179	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:66:3258:10415#0--HWUSI-EAS1656_0009_FC:3:64:15505:5283#0--HWUSI-EAS1656_0009;gene_id=tT(AGU)H;tss_id=TSS6997;nbOverlaps=21;ID=tT(AGU)H;Name=tT(AGU)H
XVI	S-MART	transcript	373793	375169	.	+	.	seqedit=false;p_id=P5892;gene_id=YPL092W;tss_id=TSS2649;nbOverlaps=0;ID=YPL092W;Name=SSU1
IX	S-MART	transcript	325748	325820	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)I2;tss_id=TSS3894;nbOverlaps=4;ID=tT(AGU)I2;Name=tT(AGU)I2
XII	S-MART	transcript	251272	253080	.	-	.	seqedit=false;p_id=P1331;gene_id=YLR055C;tss_id=TSS3489;nbOverlaps=0;ID=YLR055C;Name=SPT8
IV	S-MART	transcript	645858	651126	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:67:15608:9566#0--HWUSI-EAS1656_0009;p_id=P626;gene_id=YDR098C-B;tss_id=TSS5266;nbOverlaps=13;ID=YDR098C-B;Name=YDR098C-B
IV	S-MART	exon	645858	649820	.	-	.	ID=YDR098C-B-exon1;Name=YDR098C-B-exon1;Parent=YDR098C-B
IV	S-MART	exon	649822	651126	.	-	.	ID=YDR098C-B-exon2;Name=YDR098C-B-exon2;Parent=YDR098C-B
XII	S-MART	transcript	253861	254958	.	+	.	seqedit=false;p_id=P4614;gene_id=YLR056W;tss_id=TSS2517;nbOverlaps=0;ID=YLR056W;Name=ERG3
XII	S-MART	transcript	255306	257855	.	+	.	seqedit=false;p_id=P5782;gene_id=YLR057W;tss_id=TSS3852;nbOverlaps=0;ID=YLR057W;Name=MNL2
XII	S-MART	transcript	257992	259401	.	-	.	seqedit=false;p_id=P4805;gene_id=YLR058C;tss_id=TSS2578;nbOverlaps=0;ID=YLR058C;Name=SHM2
XII	S-MART	transcript	259738	260547	.	-	.	seqedit=false;p_id=P1465;gene_id=YLR059C;tss_id=TSS4138;nbOverlaps=0;ID=YLR059C;Name=REX2
XII	S-MART	transcript	260979	262766	.	+	.	seqedit=false;p_id=P884;gene_id=YLR060W;tss_id=TSS2485;nbOverlaps=0;ID=YLR060W;Name=FRS1
XII	S-MART	transcript	263194	263948	.	+	.	seqedit=false;p_id=P2479;gene_id=YLR061W;tss_id=TSS1977;nbOverlaps=0;ID=YLR061W;Name=RPL22A
XII	S-MART	exon	263194	263205	.	+	.	ID=YLR061W-exon1;Name=RPL22A-exon1;Parent=YLR061W
XII	S-MART	exon	263595	263948	.	+	.	ID=YLR061W-exon2;Name=RPL22A-exon2;Parent=YLR061W
XVI	S-MART	transcript	902044	906654	.	+	.	seqedit=false;p_id=P5687;gene_id=YPR184W;tss_id=TSS4422;nbOverlaps=0;ID=YPR184W;Name=GDB1
VII	S-MART	transcript	1004216	1004287	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:12762:11255#0--HWUSI-EAS1656_0009_FC:3:105:2987:16080#0--HWUSI-EAS1656_0;gene_id=tT(UGU)G2;tss_id=TSS4613;nbOverlaps=8;ID=tT(UGU)G2;Name=tT(UGU)G2
XVI	S-MART	transcript	907218	909434	.	+	.	seqedit=false;p_id=P3184;gene_id=YPR185W;tss_id=TSS4665;nbOverlaps=0;ID=YPR185W;Name=ATG13
IV	S-MART	transcript	619969	620041	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:7364:12404#0--HWUSI-EAS1656_0009_FC:3:99:7273:13194#0--HWUSI-EAS1656_0009;gene_id=tR(ACG)D;tss_id=TSS2623;nbOverlaps=22;ID=tR(ACG)D;Name=tR(ACG)D
IV	S-MART	transcript	653607	654428	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:19782:12297#0;p_id=P3266;gene_id=YDR099W;tss_id=TSS4479;nbOverlaps=1;ID=YDR099W;Name=BMH2
V	S-MART	transcript	492352	492424	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:5840:16678#0--HWUSI-EAS1656_0009_FC:3:69:10162:15849#0--HWUSI-EAS1656_000;gene_id=tR(ACG)E;tss_id=TSS7043;nbOverlaps=75;ID=tR(ACG)E;Name=tR(ACG)E
IV	S-MART	transcript	655013	655444	.	+	.	seqedit=false;p_id=P4325;gene_id=YDR100W;tss_id=TSS3686;nbOverlaps=0;ID=YDR100W;Name=TVP15
X	S-MART	transcript	233939	234011	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:47:14163:5191#0--HWUSI-EAS1656_0009_FC:3:67:4833:5861#0--HWUSI-EAS1656_0009_;gene_id=tR(ACG)J;tss_id=TSS2474;nbOverlaps=8;ID=tR(ACG)J;Name=tR(ACG)J
XVI	S-MART	transcript	370978	372921	.	+	.	seqedit=false;p_id=P1620;gene_id=YPL093W;tss_id=TSS817;nbOverlaps=0;ID=YPL093W;Name=NOG1
XVI	S-MART	transcript	135790	136443	.	+	.	seqedit=false;p_id=P2465;gene_id=YPL220W;tss_id=TSS3493;nbOverlaps=0;ID=YPL220W;Name=RPL1A
X	S-MART	transcript	405588	407273	.	+	.	seqedit=false;p_id=P5213;gene_id=YJL016W;tss_id=TSS4278;nbOverlaps=0;ID=YJL016W;Name=YJL016W
XI	S-MART	transcript	490968	491040	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:4833:5861#0--HWUSI-EAS1656_0009_FC:3:99:7273:13194#0--HWUSI-EAS1656_0009_;gene_id=tR(ACG)K;tss_id=TSS1896;nbOverlaps=22;ID=tR(ACG)K;Name=tR(ACG)K
XII	S-MART	transcript	374355	374427	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:4833:5861#0--HWUSI-EAS1656_0009_FC:3:99:7273:13194#0--HWUSI-EAS1656_0009_;gene_id=tR(ACG)L;tss_id=TSS3393;nbOverlaps=22;ID=tR(ACG)L;Name=tR(ACG)L
IV	S-MART	transcript	657648	657980	.	-	.	seqedit=false;p_id=P4391;gene_id=YDR102C;tss_id=TSS2261;nbOverlaps=0;ID=YDR102C;Name=YDR102C
XV	S-MART	transcript	340299	340371	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:7364:12404#0--HWUSI-EAS1656_0009_FC:3:99:7273:13194#0--HWUSI-EAS1656_0009;gene_id=tR(ACG)O;tss_id=TSS3407;nbOverlaps=22;ID=tR(ACG)O;Name=tR(ACG)O
IV	S-MART	transcript	661173	664910	.	-	.	seqedit=false;p_id=P4485;gene_id=YDR104C;tss_id=TSS1420;nbOverlaps=0;ID=YDR104C;Name=SPO71
XII	S-MART	transcript	818609	818680	.	+	.	seqedit=false;gene_id=tR(CCG)L;tss_id=TSS2186;nbOverlaps=0;ID=tR(CCG)L;Name=TRR4
III	S-MART	transcript	50133	50627	.	-	.	seqedit=false;p_id=P3336;gene_id=YCL041C;tss_id=TSS1838;nbOverlaps=0;ID=YCL041C;Name=YCL041C
IV	S-MART	transcript	665349	666770	.	-	.	seqedit=false;p_id=P869;gene_id=YDR105C;tss_id=TSS6424;nbOverlaps=0;ID=YDR105C;Name=TMS1
X	S-MART	transcript	538555	538626	.	+	.	seqedit=false;gene_id=tR(CCU)J;tss_id=TSS2422;nbOverlaps=0;ID=tR(CCU)J;Name=HSX1
XVI	S-MART	transcript	369839	370663	.	-	.	seqedit=false;p_id=P3392;gene_id=YPL094C;tss_id=TSS372;nbOverlaps=0;ID=YPL094C;Name=SEC62
IV	S-MART	transcript	667004	667858	.	+	.	seqedit=false;p_id=P5021;gene_id=YDR106W;tss_id=TSS1894;nbOverlaps=0;ID=YDR106W;Name=ARP10
XVI	S-MART	transcript	133043	135424	.	+	.	seqedit=false;p_id=P1312;gene_id=YPL221W;tss_id=TSS5124;nbOverlaps=0;ID=YPL221W;Name=FLC1
X	S-MART	transcript	398937	402410	.	-	.	seqedit=false;p_id=P1887;gene_id=YJL020C;tss_id=TSS2015;nbOverlaps=0;ID=YJL020C;Name=BBC1
VII	S-MART	transcript	405470	405541	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)G1;tss_id=TSS3873;nbOverlaps=12;ID=tR(UCU)G1;Name=tR(UCU)G1
XVI	S-MART	transcript	921860	922777	.	+	.	seqedit=false;p_id=P1881;gene_id=YPR192W;tss_id=TSS2530;nbOverlaps=0;ID=YPR192W;Name=AQY1
II	S-MART	transcript	405878	405949	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)B;tss_id=TSS2755;nbOverlaps=12;ID=tR(UCU)B;Name=tR(UCU)B
XVI	S-MART	transcript	922909	923379	.	-	.	seqedit=false;p_id=P1117;gene_id=YPR193C;tss_id=TSS1678;nbOverlaps=0;ID=YPR193C;Name=HPA2
IV	S-MART	transcript	568882	568953	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)D;tss_id=TSS5857;nbOverlaps=12;ID=tR(UCU)D;Name=tR(UCU)D
IV	S-MART	transcript	676102	677802	.	+	.	seqedit=false;p_id=P708;gene_id=YDR110W;tss_id=TSS3955;nbOverlaps=0;ID=YDR110W;Name=FOB1
V	S-MART	transcript	138666	138737	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)E;tss_id=TSS1641;nbOverlaps=16;ID=tR(UCU)E;Name=tR(UCU)E
IV	S-MART	transcript	673520	675667	.	-	.	seqedit=false;p_id=P996;gene_id=YDR109C;tss_id=TSS4371;nbOverlaps=0;ID=YDR109C;Name=YDR109C
VII	S-MART	transcript	828723	828794	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;gene_id=tR(UCU)G2;tss_id=TSS1267;nbOverlaps=12;ID=tR(UCU)G2;Name=tR(UCU)G2
IV	S-MART	transcript	678241	679764	.	-	.	seqedit=false;p_id=P2669;gene_id=YDR111C;tss_id=TSS4493;nbOverlaps=0;ID=YDR111C;Name=ALT2
XVI	S-MART	transcript	131870	132115	.	-	.	seqedit=false;p_id=P5309;gene_id=YPL222C-A;tss_id=TSS5100;nbOverlaps=0;ID=YPL222C-A;Name=YPL222C-A
VII	S-MART	transcript	736340	736411	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)G3;tss_id=TSS2833;nbOverlaps=12;ID=tR(UCU)G3;Name=tR(UCU)G3
IV	S-MART	transcript	679544	679852	.	+	.	seqedit=false;p_id=P5865;gene_id=YDR112W;tss_id=TSS4213;nbOverlaps=0;ID=YDR112W;Name=IRC2
X	S-MART	transcript	355374	355445	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_00;gene_id=tR(UCU)J1;tss_id=TSS6120;nbOverlaps=12;ID=tR(UCU)J1;Name=tR(UCU)J1
VIII	S-MART	transcript	517532	518713	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:5:1966:20095#0--HWUSI-EAS1656_0009_FC:3:7:11061:10790#0--HWUSI-EAS1656_0009_;p_id=P1583;gene_id=YHR208W;tss_id=TSS2981;nbOverlaps=571;ID=YHR208W;Name=BAT1
X	S-MART	transcript	374506	374577	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;gene_id=tR(UCU)J2;tss_id=TSS376;nbOverlaps=12;ID=tR(UCU)J2;Name=tR(UCU)J2
IV	S-MART	transcript	682724	683581	.	-	.	seqedit=false;p_id=P6074;gene_id=YDR116C;tss_id=TSS6174;nbOverlaps=0;ID=YDR116C;Name=MRPL1
XIII	S-MART	transcript	747892	747963	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;gene_id=tR(UCU)M1;tss_id=TSS5276;nbOverlaps=14;ID=tR(UCU)M1;Name=tR(UCU)M1
IV	S-MART	transcript	681924	682226	.	-	.	seqedit=false;p_id=P3702;gene_id=YDR114C;tss_id=TSS2547;nbOverlaps=0;ID=YDR114C;Name=YDR114C
XI	S-MART	transcript	162487	162558	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;gene_id=tR(UCU)K;tss_id=TSS4507;nbOverlaps=14;ID=tR(UCU)K;Name=tR(UCU)K
XVI	S-MART	transcript	366529	366735	.	-	.	seqedit=false;p_id=P3157;gene_id=YPL096C-A;tss_id=TSS1952;nbOverlaps=0;ID=YPL096C-A;Name=ERI1
IV	S-MART	transcript	682175	682492	.	+	.	seqedit=false;p_id=P62;gene_id=YDR115W;tss_id=TSS3321;nbOverlaps=0;ID=YDR115W;Name=YDR115W
XIII	S-MART	transcript	131825	131896	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:12967:18857#0--HWUSI-EAS1656_0009_FC:3:73:12761:10442#0--HWUSI-EAS1656_00;gene_id=tR(UCU)M2;tss_id=TSS3390;nbOverlaps=12;ID=tR(UCU)M2;Name=tR(UCU)M2
IV	S-MART	transcript	683946	685643	.	-	.	seqedit=false;p_id=P4145;gene_id=YDR117C;tss_id=TSS6134;nbOverlaps=0;ID=YDR117C;Name=TMA64
Mito	S-MART	transcript	67309	67381	.	+	.	seqedit=false;gene_id=tR(UCU)Q1;tss_id=TSS3905;nbOverlaps=0;ID=tR(UCU)Q1;Name=tR(UCU)Q1
IV	S-MART	transcript	685882	687840	.	+	.	seqedit=false;p_id=P4918;gene_id=YDR118W;tss_id=TSS1101;nbOverlaps=0;ID=YDR118W;Name=APC4
XVI	S-MART	transcript	883239	883595	.	+	.	seqedit=false;p_id=P4409;gene_id=YPR170W-B;tss_id=TSS6188;nbOverlaps=0;ID=YPR170W-B;Name=YPR170W-B
XVI	S-MART	exon	883239	883387	.	+	.	ID=YPR170W-B-exon1;Name=YPR170W-B-exon1;Parent=YPR170W-B
XVI	S-MART	exon	883487	883595	.	+	.	ID=YPR170W-B-exon2;Name=YPR170W-B-exon2;Parent=YPR170W-B
XV	S-MART	transcript	595112	596434	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P3273;gene_id=YOR142W-A;tss_id=TSS5949;nbOverlaps=12;ID=YOR142W-A;Name=YOR142W-A
IV	S-MART	transcript	437772	437853	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)D1;tss_id=TSS714;nbOverlaps=643;ID=tS(AGA)D1;Name=tS(AGA)D1
IX	S-MART	transcript	365466	369908	.	-	.	seqedit=false;p_id=P5923;gene_id=YIR006C;tss_id=TSS2972;nbOverlaps=0;ID=YIR006C;Name=PAN1
IX	S-MART	transcript	373077	374306	.	-	.	seqedit=false;p_id=P4607;gene_id=YIR008C;tss_id=TSS4955;nbOverlaps=0;ID=YIR008C;Name=PRI1
IX	S-MART	transcript	370704	372998	.	+	.	seqedit=false;p_id=P679;gene_id=YIR007W;tss_id=TSS6132;nbOverlaps=0;ID=YIR007W;Name=YIR007W
IX	S-MART	transcript	374525	374860	.	+	.	seqedit=false;p_id=P2032;gene_id=YIR009W;tss_id=TSS480;nbOverlaps=0;ID=YIR009W;Name=MSL1
IX	S-MART	transcript	375431	377161	.	+	.	seqedit=false;p_id=P6517;gene_id=YIR010W;tss_id=TSS2748;nbOverlaps=0;ID=YIR010W;Name=DSN1
I	S-MART	transcript	182522	182603	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)A;tss_id=TSS6719;nbOverlaps=644;ID=tS(AGA)A;Name=tS(AGA)A
IX	S-MART	transcript	377287	378246	.	-	.	seqedit=false;p_id=P891;gene_id=YIR011C;tss_id=TSS652;nbOverlaps=0;ID=YIR011C;Name=STS1
IX	S-MART	transcript	378486	379781	.	+	.	seqedit=false;p_id=P2783;gene_id=YIR012W;tss_id=TSS6677;nbOverlaps=0;ID=YIR012W;Name=SQT1
VII	S-MART	transcript	93792	94460	.	+	.	seqedit=false;p_id=P4461;gene_id=YGL210W;tss_id=TSS1859;nbOverlaps=0;ID=YGL210W;Name=YPT32
IX	S-MART	transcript	380019	380384	.	-	.	seqedit=false;p_id=P265;gene_id=YIR013C;tss_id=TSS4988;nbOverlaps=0;ID=YIR013C;Name=GAT4
IX	S-MART	transcript	381948	382382	.	+	.	seqedit=false;p_id=P4873;gene_id=YIR015W;tss_id=TSS293;nbOverlaps=0;ID=YIR015W;Name=RPR2
IX	S-MART	transcript	381086	381814	.	+	.	seqedit=false;p_id=P3897;gene_id=YIR014W;tss_id=TSS1156;nbOverlaps=0;ID=YIR014W;Name=YIR014W
IX	S-MART	transcript	383556	384119	.	-	.	seqedit=false;p_id=P160;gene_id=YIR017C;tss_id=TSS5764;nbOverlaps=0;ID=YIR017C;Name=MET28
II	S-MART	transcript	227075	227156	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)B;tss_id=TSS3367;nbOverlaps=643;ID=tS(AGA)B;Name=tS(AGA)B
XVI	S-MART	transcript	366927	368018	.	+	.	seqedit=false;p_id=P5740;gene_id=YPL096W;tss_id=TSS5976;nbOverlaps=0;ID=YPL096W;Name=PNG1
II	S-MART	transcript	90605	90925	.	-	.	seqedit=false;p_id=P3510;gene_id=YBL070C;tss_id=TSS1406;nbOverlaps=0;ID=YBL070C;Name=YBL070C
IX	S-MART	transcript	383566	384165	.	+	.	seqedit=false;p_id=P3706;gene_id=YIR017W-A;tss_id=TSS3897;nbOverlaps=0;ID=YIR017W-A;Name=YIR017W-A
VII	S-MART	transcript	92512	93591	.	+	.	seqedit=false;p_id=P5040;gene_id=YGL211W;tss_id=TSS6401;nbOverlaps=0;ID=YGL211W;Name=NCS6
II	S-MART	transcript	89978	90226	.	+	.	seqedit=false;p_id=P6324;gene_id=YBL071W-A;tss_id=TSS2999;nbOverlaps=0;ID=YBL071W-A;Name=KTI11
II	S-MART	transcript	88523	89125	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:120:12291:10884#0--HWUSI-EAS1656_0009_FC:3:87:16446:18923#0--HWUSI-EAS1656_0;p_id=P580;gene_id=YBL072C;tss_id=TSS3868;nbOverlaps=11218;ID=YBL072C;Name=RPS8A
IX	S-MART	transcript	389572	393675	.	-	.	seqedit=false;p_id=P6356;gene_id=YIR019C;tss_id=TSS6379;nbOverlaps=0;ID=YIR019C;Name=MUC1
X	S-MART	transcript	398109	398417	.	+	.	seqedit=false;p_id=P1076;gene_id=YJL022W;tss_id=TSS3687;nbOverlaps=0;ID=YJL022W;Name=YJL022W
IX	S-MART	transcript	397215	397949	.	-	.	seqedit=false;p_id=P559;gene_id=YIR020C-B;tss_id=TSS1215;nbOverlaps=0;ID=YIR020C-B;Name=YIR020C-B
IV	S-MART	transcript	980974	981055	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)D2;tss_id=TSS3509;nbOverlaps=643;ID=tS(AGA)D2;Name=tS(AGA)D2
IX	S-MART	transcript	394255	394557	.	-	.	seqedit=false;p_id=P5903;gene_id=YIR020C;tss_id=TSS1065;nbOverlaps=0;ID=YIR020C;Name=YIR020C
IX	S-MART	transcript	394917	395159	.	+	.	seqedit=false;p_id=P2473;gene_id=YIR020W-A;tss_id=TSS118;nbOverlaps=0;ID=YIR020W-A;Name=YIR020W-A
VII	S-MART	transcript	91432	92382	.	+	.	seqedit=false;p_id=P2664;gene_id=YGL212W;tss_id=TSS869;nbOverlaps=0;ID=YGL212W;Name=VAM7
IX	S-MART	transcript	397294	398385	.	+	.	seqedit=false;p_id=P2113;gene_id=YIR021W;tss_id=TSS1979;nbOverlaps=0;ID=YIR021W;Name=MRS1
IX	S-MART	transcript	398514	398726	.	+	.	seqedit=false;p_id=P3204;gene_id=YIR021W-A;tss_id=TSS4628;nbOverlaps=0;ID=YIR021W-A;Name=YIR021W-A
IX	S-MART	transcript	398733	399236	.	+	.	seqedit=false;p_id=P6135;gene_id=YIR022W;tss_id=TSS1056;nbOverlaps=0;ID=YIR022W;Name=SEC11
IX	S-MART	transcript	402383	402706	.	-	.	seqedit=false;p_id=P998;gene_id=YIR023C-A;tss_id=TSS1193;nbOverlaps=0;ID=YIR023C-A;Name=YIR023C-A
IV	S-MART	transcript	1305630	1305712	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:8312:13013#0--HWUSI-EAS1656_0009_FC:3:60:16244:3413#0--HWUSI-EAS1656_0009;gene_id=tS(AGA)D3;tss_id=TSS2647;nbOverlaps=446;ID=tS(AGA)D3;Name=tS(AGA)D3
IX	S-MART	transcript	399777	402689	.	+	.	seqedit=false;p_id=P6461;gene_id=YIR023W;tss_id=TSS5916;nbOverlaps=0;ID=YIR023W;Name=DAL81
II	S-MART	transcript	71866	72972	.	+	.	seqedit=false;p_id=P360;gene_id=YBL081W;tss_id=TSS252;nbOverlaps=0;ID=YBL081W;Name=YBL081W
VII	S-MART	transcript	90054	91247	.	-	.	seqedit=false;p_id=P6087;gene_id=YGL213C;tss_id=TSS5855;nbOverlaps=0;ID=YGL213C;Name=SKI8
VIII	S-MART	transcript	3726	4541	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:25:17817:12043#0--HWUSI-EAS1656_00;p_id=P5517;gene_id=YHL049C;tss_id=TSS6525;nbOverlaps=126;ID=YHL049C;Name=YHL049C
II	S-MART	transcript	67169	69445	.	-	.	seqedit=false;p_id=P5134;gene_id=YBL084C;tss_id=TSS308;nbOverlaps=0;ID=YBL084C;Name=CDC27
II	S-MART	transcript	69713	70138	.	-	.	seqedit=false;p_id=P6165;gene_id=YBL083C;tss_id=TSS4216;nbOverlaps=0;ID=YBL083C;Name=YBL083C
II	S-MART	transcript	63876	66818	.	+	.	seqedit=false;p_id=P3839;gene_id=YBL085W;tss_id=TSS2257;nbOverlaps=0;ID=YBL085W;Name=BOI1
II	S-MART	transcript	59822	60739	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:11647:13834#0--HWUSI-EAS1656_0009_FC:3:99:5469:3363#0--HWUSI-EAS1656_0009;p_id=P551;gene_id=YBL087C;tss_id=TSS385;nbOverlaps=1334;ID=YBL087C;Name=RPL23A
II	S-MART	exon	59822	60193	.	-	.	ID=YBL087C-exon1;Name=RPL23A-exon1;Parent=YBL087C
II	S-MART	exon	60698	60739	.	-	.	ID=YBL087C-exon2;Name=RPL23A-exon2;Parent=YBL087C
III	S-MART	transcript	227942	228042	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:6969:5946#0--HWUSI-EAS1656_0009_FC:3:49:8900:15984#0--HWUSI-EAS1656_0009;gene_id=tS(CGA)C;tss_id=TSS2978;nbOverlaps=3;ID=tS(CGA)C;Name=SUP61
III	S-MART	exon	227942	227978	.	+	.	ID=tS(CGA)C-exon1;Name=SUP61-exon1;Parent=tS(CGA)C
III	S-MART	exon	227998	228042	.	+	.	ID=tS(CGA)C-exon2;Name=SUP61-exon2;Parent=tS(CGA)C
II	S-MART	transcript	61202	62602	.	-	.	seqedit=false;p_id=P6073;gene_id=YBL086C;tss_id=TSS6975;nbOverlaps=0;ID=YBL086C;Name=YBL086C
IX	S-MART	transcript	412036	412770	.	-	.	seqedit=false;p_id=P6460;gene_id=YIR030C;tss_id=TSS2627;nbOverlaps=0;ID=YIR030C;Name=DCG1
VII	S-MART	transcript	87981	89339	.	+	.	seqedit=false;p_id=P4630;gene_id=YGL215W;tss_id=TSS6451;nbOverlaps=0;ID=YGL215W;Name=CLG1
IX	S-MART	transcript	412899	413282	.	+	.	seqedit=false;p_id=P2277;gene_id=YIR030W-A;tss_id=TSS4857;nbOverlaps=0;ID=YIR030W-A;Name=YIR030W-A
II	S-MART	transcript	51019	59382	.	-	.	seqedit=false;p_id=P2491;gene_id=YBL088C;tss_id=TSS3205;nbOverlaps=0;ID=YBL088C;Name=TEL1
II	S-MART	transcript	49574	50953	.	+	.	seqedit=false;p_id=P6253;gene_id=YBL089W;tss_id=TSS6202;nbOverlaps=0;ID=YBL089W;Name=AVT5
II	S-MART	transcript	48825	49358	.	+	.	seqedit=false;p_id=P6529;gene_id=YBL090W;tss_id=TSS2236;nbOverlaps=0;ID=YBL090W;Name=MRP21
V	S-MART	transcript	86604	86685	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)E;tss_id=TSS4924;nbOverlaps=665;ID=tS(AGA)E;Name=tS(AGA)E
II	S-MART	transcript	47363	48628	.	-	.	seqedit=false;p_id=P134;gene_id=YBL091C;tss_id=TSS1489;nbOverlaps=0;ID=YBL091C;Name=MAP2
II	S-MART	transcript	46565	47180	.	-	.	seqedit=false;p_id=P6067;gene_id=YBL091C-A;tss_id=TSS6853;nbOverlaps=0;ID=YBL091C-A;Name=SCS22
II	S-MART	exon	46565	47058	.	-	.	ID=YBL091C-A-exon1;Name=SCS22-exon1;Parent=YBL091C-A
II	S-MART	exon	47147	47180	.	-	.	ID=YBL091C-A-exon2;Name=SCS22-exon2;Parent=YBL091C-A
VII	S-MART	transcript	90010	90495	.	+	.	seqedit=false;p_id=P284;gene_id=YGL214W;tss_id=TSS6994;nbOverlaps=0;ID=YGL214W;Name=YGL214W
IX	S-MART	transcript	421026	421790	.	-	.	seqedit=false;p_id=P1611;gene_id=YIR035C;tss_id=TSS984;nbOverlaps=0;ID=YIR035C;Name=YIR035C
IX	S-MART	transcript	422635	423036	.	+	.	seqedit=false;p_id=P4149;gene_id=YIR036W-A;tss_id=TSS3262;nbOverlaps=0;ID=YIR036W-A;Name=YIR036W-A
II	S-MART	transcript	45978	46370	.	+	.	seqedit=false;p_id=P2091;gene_id=YBL092W;tss_id=TSS3645;nbOverlaps=0;ID=YBL092W;Name=RPL32
II	S-MART	transcript	44256	44918	.	-	.	seqedit=false;p_id=P5423;gene_id=YBL093C;tss_id=TSS4442;nbOverlaps=0;ID=YBL093C;Name=ROX3
VII	S-MART	transcript	561662	561743	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)G;tss_id=TSS4008;nbOverlaps=644;ID=tS(AGA)G;Name=tS(AGA)G
XVI	S-MART	transcript	364952	366430	.	+	.	seqedit=false;p_id=P5183;gene_id=YPL097W;tss_id=TSS2927;nbOverlaps=0;ID=YPL097W;Name=MSY1
II	S-MART	transcript	40831	43095	.	+	.	seqedit=false;p_id=P5449;gene_id=YBL097W;tss_id=TSS6844;nbOverlaps=0;ID=YBL097W;Name=BRN1
II	S-MART	transcript	43765	44097	.	-	.	seqedit=false;p_id=P1148;gene_id=YBL094C;tss_id=TSS2847;nbOverlaps=0;ID=YBL094C;Name=YBL094C
II	S-MART	transcript	43277	44089	.	+	.	seqedit=false;p_id=P5897;gene_id=YBL095W;tss_id=TSS6637;nbOverlaps=0;ID=YBL095W;Name=YBL095W
XVI	S-MART	transcript	126634	128088	.	-	.	seqedit=false;p_id=P4121;gene_id=YPL224C;tss_id=TSS4093;nbOverlaps=0;ID=YPL224C;Name=MMT2
II	S-MART	transcript	43174	43482	.	-	.	seqedit=false;p_id=P3823;gene_id=YBL096C;tss_id=TSS2673;nbOverlaps=0;ID=YBL096C;Name=YBL096C
IX	S-MART	transcript	435273	435983	.	-	.	seqedit=false;p_id=P5933;gene_id=YIR042C;tss_id=TSS404;nbOverlaps=0;ID=YIR042C;Name=YIR042C
II	S-MART	transcript	37053	38690	.	+	.	seqedit=false;p_id=P719;gene_id=YBL099W;tss_id=TSS2159;nbOverlaps=0;ID=YBL099W;Name=ATP1
VIII	S-MART	transcript	133026	133107	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)H;tss_id=TSS1624;nbOverlaps=670;ID=tS(AGA)H;Name=tS(AGA)H
II	S-MART	transcript	29935	31251	.	+	.	seqedit=false;p_id=P1515;gene_id=YBL100W-A;tss_id=TSS2607;nbOverlaps=0;ID=YBL100W-A;Name=YBL100W-A
II	S-MART	transcript	36989	37303	.	-	.	seqedit=false;p_id=P6561;gene_id=YBL100C;tss_id=TSS5699;nbOverlaps=0;ID=YBL100C;Name=YBL100C
II	S-MART	transcript	29935	35248	.	+	.	seqedit=false;p_id=P1379;gene_id=YBL100W-B;tss_id=TSS2607;nbOverlaps=0;ID=YBL100W-B;Name=YBL100W-B
II	S-MART	exon	29935	31227	.	+	.	ID=YBL100W-B-exon1;Name=YBL100W-B-exon1;Parent=YBL100W-B
II	S-MART	exon	31229	35248	.	+	.	ID=YBL100W-B-exon2;Name=YBL100W-B-exon2;Parent=YBL100W-B
X	S-MART	transcript	433221	434651	.	-	.	seqedit=false;p_id=P960;gene_id=YJL002C;tss_id=TSS3304;nbOverlaps=0;ID=YJL002C;Name=OST1
X	S-MART	transcript	432644	433000	.	+	.	seqedit=false;p_id=P3557;gene_id=YJL003W;tss_id=TSS2402;nbOverlaps=0;ID=YJL003W;Name=COX16
II	S-MART	transcript	28427	28546	.	+	.	seqedit=false;p_id=P5899;gene_id=YBL100W-C;tss_id=TSS6508;nbOverlaps=0;ID=YBL100W-C;Name=YBL100W-C
X	S-MART	transcript	524012	524093	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)J;tss_id=TSS1619;nbOverlaps=643;ID=tS(AGA)J;Name=tS(AGA)J
II	S-MART	transcript	24946	28299	.	-	.	seqedit=false;p_id=P819;gene_id=YBL101C;tss_id=TSS4058;nbOverlaps=0;ID=YBL101C;Name=ECM21
II	S-MART	transcript	24098	24745	.	+	.	seqedit=false;p_id=P1451;gene_id=YBL102W;tss_id=TSS2209;nbOverlaps=0;ID=YBL102W;Name=SFT2
VII	S-MART	transcript	84839	85180	.	-	.	seqedit=false;p_id=P6341;gene_id=YGL217C;tss_id=TSS3316;nbOverlaps=0;ID=YGL217C;Name=YGL217C
II	S-MART	transcript	22076	23536	.	-	.	seqedit=false;p_id=P2362;gene_id=YBL103C;tss_id=TSS2083;nbOverlaps=0;ID=YBL103C;Name=RTG3
II	S-MART	transcript	18177	21293	.	-	.	seqedit=false;p_id=P6404;gene_id=YBL104C;tss_id=TSS4788;nbOverlaps=0;ID=YBL104C;Name=SEA4
II	S-MART	transcript	14241	17696	.	-	.	seqedit=false;p_id=P40;gene_id=YBL105C;tss_id=TSS5751;nbOverlaps=0;ID=YBL105C;Name=PKC1
II	S-MART	transcript	10847	13879	.	-	.	seqedit=false;p_id=P2622;gene_id=YBL106C;tss_id=TSS3206;nbOverlaps=0;ID=YBL106C;Name=SRO77
XII	S-MART	transcript	167944	168025	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)L;tss_id=TSS4578;nbOverlaps=645;ID=tS(AGA)L;Name=tS(AGA)L
II	S-MART	transcript	9268	9372	.	+	.	seqedit=false;p_id=P1042;gene_id=YBL107W-A;tss_id=TSS5501;nbOverlaps=0;ID=YBL107W-A;Name=YBL107W-A
II	S-MART	transcript	9961	10551	.	-	.	seqedit=false;p_id=P5920;gene_id=YBL107C;tss_id=TSS4024;nbOverlaps=0;ID=YBL107C;Name=YBL107C
VII	S-MART	transcript	83650	84300	.	+	.	seqedit=false;p_id=P4796;gene_id=YGL218W;tss_id=TSS3165;nbOverlaps=0;ID=YGL218W;Name=YGL218W
II	S-MART	transcript	7605	7733	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:14589:7302#0;p_id=P4834;gene_id=YBL108C-A;tss_id=TSS6658;nbOverlaps=1;ID=YBL108C-A;Name=PAU9
X	S-MART	transcript	407558	409162	.	+	.	seqedit=false;p_id=P4105;gene_id=YJL014W;tss_id=TSS2706;nbOverlaps=0;ID=YJL014W;Name=CCT3
XIV	S-MART	transcript	430087	434493	.	+	.	seqedit=false;p_id=P2590;gene_id=YNL102W;tss_id=TSS2055;nbOverlaps=0;ID=YNL102W;Name=POL1
XIII	S-MART	transcript	259158	259239	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:83:16182:16829#0--HWUSI-EAS1656_0009_FC:3:13:14625:11492#0--HWUSI-EAS1656_00;gene_id=tS(AGA)M;tss_id=TSS1141;nbOverlaps=645;ID=tS(AGA)M;Name=tS(AGA)M
XIV	S-MART	transcript	427735	429753	.	+	.	seqedit=false;p_id=P6669;gene_id=YNL103W;tss_id=TSS6259;nbOverlaps=0;ID=YNL103W;Name=MET4
XIV	S-MART	transcript	426719	426808	.	+	.	seqedit=false;p_id=P1490;gene_id=YNL103W-A;tss_id=TSS284;nbOverlaps=0;ID=YNL103W-A;Name=YNL103W-A
XIV	S-MART	transcript	424895	426754	.	-	.	seqedit=false;p_id=P6653;gene_id=YNL104C;tss_id=TSS5449;nbOverlaps=0;ID=YNL104C;Name=LEU4
XIV	S-MART	transcript	424155	424583	.	+	.	seqedit=false;p_id=P2867;gene_id=YNL105W;tss_id=TSS1850;nbOverlaps=0;ID=YNL105W;Name=RRT16
XIV	S-MART	transcript	420944	424495	.	-	.	seqedit=false;p_id=P480;gene_id=YNL106C;tss_id=TSS3533;nbOverlaps=0;ID=YNL106C;Name=INP52
XIV	S-MART	transcript	420098	420778	.	+	.	seqedit=false;p_id=P915;gene_id=YNL107W;tss_id=TSS10;nbOverlaps=0;ID=YNL107W;Name=YAF9
XIV	S-MART	transcript	417826	418488	.	-	.	seqedit=false;p_id=P6407;gene_id=YNL110C;tss_id=TSS6726;nbOverlaps=0;ID=YNL110C;Name=NOP15
XIV	S-MART	transcript	419014	419826	.	-	.	seqedit=false;p_id=P386;gene_id=YNL108C;tss_id=TSS4046;nbOverlaps=0;ID=YNL108C;Name=YNL108C
XIV	S-MART	transcript	418964	419509	.	+	.	seqedit=false;p_id=P4943;gene_id=YNL109W;tss_id=TSS3111;nbOverlaps=0;ID=YNL109W;Name=YNL109W
XVI	S-MART	transcript	121767	125357	.	+	.	seqedit=false;p_id=P1371;gene_id=YPL226W;tss_id=TSS4477;nbOverlaps=0;ID=YPL226W;Name=NEW1
XIV	S-MART	transcript	416940	417302	.	-	.	seqedit=false;p_id=P5561;gene_id=YNL111C;tss_id=TSS6534;nbOverlaps=0;ID=YNL111C;Name=CYB5
XIV	S-MART	transcript	413639	416281	.	+	.	seqedit=false;p_id=P2151;gene_id=YNL112W;tss_id=TSS2213;nbOverlaps=0;ID=YNL112W;Name=DBP2
XIV	S-MART	exon	413639	414911	.	+	.	ID=YNL112W-exon1;Name=DBP2-exon1;Parent=YNL112W
XIV	S-MART	exon	415914	416281	.	+	.	ID=YNL112W-exon2;Name=DBP2-exon2;Parent=YNL112W
XIV	S-MART	transcript	412771	413199	.	+	.	seqedit=false;p_id=P4524;gene_id=YNL113W;tss_id=TSS18;nbOverlaps=0;ID=YNL113W;Name=RPC19
VII	S-MART	transcript	80659	81186	.	-	.	seqedit=false;p_id=P2025;gene_id=YGL222C;tss_id=TSS1356;nbOverlaps=0;ID=YGL222C;Name=EDC1
XIV	S-MART	transcript	408341	409909	.	+	.	seqedit=false;p_id=P3650;gene_id=YNL116W;tss_id=TSS604;nbOverlaps=0;ID=YNL116W;Name=DMA2
XIV	S-MART	transcript	412684	413055	.	-	.	seqedit=false;p_id=P4550;gene_id=YNL114C;tss_id=TSS3889;nbOverlaps=0;ID=YNL114C;Name=YNL114C
XIV	S-MART	transcript	410119	412053	.	-	.	seqedit=false;p_id=P1734;gene_id=YNL115C;tss_id=TSS4361;nbOverlaps=0;ID=YNL115C;Name=YNL115C
XIV	S-MART	transcript	406358	408022	.	+	.	seqedit=false;p_id=P6495;gene_id=YNL117W;tss_id=TSS5241;nbOverlaps=0;ID=YNL117W;Name=MLS1
XII	S-MART	transcript	784354	784453	.	+	.	seqedit=false;gene_id=tS(GCU)L;tss_id=TSS5420;nbOverlaps=0;ID=tS(GCU)L;Name=tS(GCU)L
XII	S-MART	exon	784354	784389	.	+	.	ID=tS(GCU)L-exon1;Name=tS(GCU)L-exon1;Parent=tS(GCU)L
XII	S-MART	exon	784410	784453	.	+	.	ID=tS(GCU)L-exon2;Name=tS(GCU)L-exon2;Parent=tS(GCU)L
XIV	S-MART	transcript	402652	405564	.	-	.	seqedit=false;p_id=P6273;gene_id=YNL118C;tss_id=TSS2078;nbOverlaps=0;ID=YNL118C;Name=DCP2
XIV	S-MART	transcript	401040	402521	.	+	.	seqedit=false;p_id=P5662;gene_id=YNL119W;tss_id=TSS5132;nbOverlaps=0;ID=YNL119W;Name=NCS2
VII	S-MART	transcript	79112	80365	.	-	.	seqedit=false;p_id=P4910;gene_id=YGL223C;tss_id=TSS322;nbOverlaps=0;ID=YGL223C;Name=COG1
XIV	S-MART	transcript	398684	400537	.	-	.	seqedit=false;p_id=P468;gene_id=YNL121C;tss_id=TSS1527;nbOverlaps=0;ID=YNL121C;Name=TOM70
XIV	S-MART	transcript	401033	401518	.	-	.	seqedit=false;p_id=P369;gene_id=YNL120C;tss_id=TSS2558;nbOverlaps=0;ID=YNL120C;Name=YNL120C
XIV	S-MART	transcript	394685	397678	.	+	.	seqedit=false;p_id=P353;gene_id=YNL123W;tss_id=TSS4998;nbOverlaps=0;ID=YNL123W;Name=NMA111
XIV	S-MART	transcript	398023	398370	.	-	.	seqedit=false;p_id=P1825;gene_id=YNL122C;tss_id=TSS5034;nbOverlaps=0;ID=YNL122C;Name=YNL122C
VI	S-MART	transcript	191513	191613	.	-	.	seqedit=false;gene_id=tS(GCU)F;tss_id=TSS4330;nbOverlaps=0;ID=tS(GCU)F;Name=tS(GCU)F
VI	S-MART	exon	191513	191557	.	-	.	ID=tS(GCU)F-exon1;Name=tS(GCU)F-exon1;Parent=tS(GCU)F
VI	S-MART	exon	191577	191613	.	-	.	ID=tS(GCU)F-exon2;Name=tS(GCU)F-exon2;Parent=tS(GCU)F
XIV	S-MART	transcript	392892	394370	.	+	.	seqedit=false;p_id=P1485;gene_id=YNL124W;tss_id=TSS4844;nbOverlaps=0;ID=YNL124W;Name=NAF1
XIV	S-MART	transcript	390146	392167	.	-	.	seqedit=false;p_id=P4934;gene_id=YNL125C;tss_id=TSS5135;nbOverlaps=0;ID=YNL125C;Name=ESBP6
VII	S-MART	transcript	78015	78857	.	-	.	seqedit=false;p_id=P4521;gene_id=YGL224C;tss_id=TSS2601;nbOverlaps=0;ID=YGL224C;Name=SDT1
XIV	S-MART	transcript	387227	389767	.	+	.	seqedit=false;p_id=P168;gene_id=YNL126W;tss_id=TSS4394;nbOverlaps=0;ID=YNL126W;Name=SPC98
XIV	S-MART	transcript	383987	386848	.	+	.	seqedit=false;p_id=P2603;gene_id=YNL127W;tss_id=TSS4656;nbOverlaps=0;ID=YNL127W;Name=FAR11
XIV	S-MART	transcript	382359	383663	.	+	.	seqedit=false;p_id=P1838;gene_id=YNL128W;tss_id=TSS5676;nbOverlaps=0;ID=YNL128W;Name=TEP1
XIV	S-MART	transcript	381480	382202	.	+	.	seqedit=false;p_id=P4764;gene_id=YNL129W;tss_id=TSS1208;nbOverlaps=0;ID=YNL129W;Name=NRK1
XIV	S-MART	transcript	379558	380831	.	-	.	seqedit=false;p_id=P655;gene_id=YNL130C;tss_id=TSS22;nbOverlaps=0;ID=YNL130C;Name=CPT1
XIV	S-MART	exon	379558	380689	.	-	.	ID=YNL130C-exon1;Name=CPT1-exon1;Parent=YNL130C
XIV	S-MART	exon	380782	380831	.	-	.	ID=YNL130C-exon2;Name=CPT1-exon2;Parent=YNL130C
VII	S-MART	transcript	76894	77907	.	+	.	seqedit=false;p_id=P2355;gene_id=YGL225W;tss_id=TSS3818;nbOverlaps=0;ID=YGL225W;Name=VRG4
XIV	S-MART	transcript	381245	381391	.	-	.	seqedit=false;p_id=P3760;gene_id=YNL130C-A;tss_id=TSS913;nbOverlaps=0;ID=YNL130C-A;Name=DGR1
XIV	S-MART	transcript	378767	379225	.	+	.	seqedit=false;p_id=P2322;gene_id=YNL131W;tss_id=TSS5745;nbOverlaps=0;ID=YNL131W;Name=TOM22
XIV	S-MART	transcript	375321	378491	.	+	.	seqedit=false;p_id=P1784;gene_id=YNL132W;tss_id=TSS6616;nbOverlaps=0;ID=YNL132W;Name=KRE33
XIV	S-MART	transcript	374171	374692	.	-	.	seqedit=false;p_id=P5768;gene_id=YNL133C;tss_id=TSS231;nbOverlaps=0;ID=YNL133C;Name=FYV6
XIV	S-MART	transcript	371882	372226	.	-	.	seqedit=false;p_id=P6084;gene_id=YNL135C;tss_id=TSS3653;nbOverlaps=0;ID=YNL135C;Name=FPR1
VII	S-MART	transcript	72749	73158	.	-	.	seqedit=false;p_id=P1789;gene_id=YGL226C-A;tss_id=TSS1320;nbOverlaps=0;ID=YGL226C-A;Name=OST5
VII	S-MART	exon	72749	72988	.	-	.	ID=YGL226C-A-exon1;Name=OST5-exon1;Parent=YGL226C-A
VII	S-MART	exon	73138	73158	.	-	.	ID=YGL226C-A-exon2;Name=OST5-exon2;Parent=YGL226C-A
XIV	S-MART	transcript	372451	373581	.	-	.	seqedit=false;p_id=P3812;gene_id=YNL134C;tss_id=TSS1413;nbOverlaps=0;ID=YNL134C;Name=YNL134C
XVI	S-MART	transcript	126006	126446	.	+	.	seqedit=false;p_id=P235;gene_id=YPL225W;tss_id=TSS1665;nbOverlaps=0;ID=YPL225W;Name=YPL225W
XIV	S-MART	transcript	370368	371645	.	+	.	seqedit=false;p_id=P2779;gene_id=YNL136W;tss_id=TSS4260;nbOverlaps=0;ID=YNL136W;Name=EAF7
XIV	S-MART	transcript	368595	370055	.	-	.	seqedit=false;p_id=P6538;gene_id=YNL137C;tss_id=TSS4649;nbOverlaps=0;ID=YNL137C;Name=NAM9
XIV	S-MART	transcript	366741	368321	.	+	.	seqedit=false;p_id=P1176;gene_id=YNL138W;tss_id=TSS1584;nbOverlaps=0;ID=YNL138W;Name=SRV2
XIV	S-MART	transcript	366033	366412	.	+	.	seqedit=false;p_id=P5808;gene_id=YNL138W-A;tss_id=TSS6306;nbOverlaps=0;ID=YNL138W-A;Name=YSF3
XIV	S-MART	exon	366033	366035	.	+	.	ID=YNL138W-A-exon1;Name=YSF3-exon1;Parent=YNL138W-A
XIV	S-MART	exon	366158	366412	.	+	.	ID=YNL138W-A-exon2;Name=YSF3-exon2;Parent=YNL138W-A
XIV	S-MART	transcript	360924	365717	.	-	.	seqedit=false;p_id=P4232;gene_id=YNL139C;tss_id=TSS5112;nbOverlaps=0;ID=YNL139C;Name=THO2
XIV	S-MART	transcript	359596	360639	.	+	.	seqedit=false;p_id=P5431;gene_id=YNL141W;tss_id=TSS4390;nbOverlaps=0;ID=YNL141W;Name=AAH1
VI	S-MART	transcript	107852	109930	.	-	.	seqedit=false;p_id=P6009;gene_id=YFL013C;tss_id=TSS3654;nbOverlaps=0;ID=YFL013C;Name=IES1
XIV	S-MART	transcript	360917	361486	.	-	.	seqedit=false;p_id=P2989;gene_id=YNL140C;tss_id=TSS6764;nbOverlaps=0;ID=YNL140C;Name=YNL140C
XIV	S-MART	transcript	357453	358952	.	+	.	seqedit=false;p_id=P33;gene_id=YNL142W;tss_id=TSS2491;nbOverlaps=0;ID=YNL142W;Name=MEP2
XIV	S-MART	transcript	353061	353144	.	+	.	seqedit=false;p_id=P4902;gene_id=YNL144W-A;tss_id=TSS3907;nbOverlaps=0;ID=YNL144W-A;Name=YNL144W-A
XIV	S-MART	transcript	356794	357186	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:105:5143:5850#0--HWUSI-EAS1656_0009_FC:3:79:6999:8203#0--HWUSI-EAS1656_0009_;p_id=P5521;gene_id=YNL143C;tss_id=TSS3118;nbOverlaps=8;ID=YNL143C;Name=YNL143C
XIV	S-MART	transcript	352820	355042	.	-	.	seqedit=false;p_id=P1989;gene_id=YNL144C;tss_id=TSS2977;nbOverlaps=0;ID=YNL144C;Name=YNL144C
XIV	S-MART	transcript	352414	352530	.	+	.	seqedit=false;p_id=P2776;gene_id=YNL145W;tss_id=TSS5552;nbOverlaps=0;ID=YNL145W;Name=MFA2
XIV	S-MART	transcript	351386	351580	.	-	.	seqedit=false;p_id=P4045;gene_id=YNL146C-A;tss_id=TSS1615;nbOverlaps=0;ID=YNL146C-A;Name=YNL146C-A
Mito	S-MART	transcript	69203	69288	.	+	.	seqedit=false;gene_id=tS(GCU)Q1;tss_id=TSS179;nbOverlaps=0;ID=tS(GCU)Q1;Name=tS(GCU)Q1
XIV	S-MART	transcript	350940	351383	.	+	.	seqedit=false;p_id=P3497;gene_id=YNL147W;tss_id=TSS2993;nbOverlaps=0;ID=YNL147W;Name=LSM7
XIV	S-MART	exon	350940	350957	.	+	.	ID=YNL147W-exon1;Name=LSM7-exon1;Parent=YNL147W
XIV	S-MART	exon	351054	351383	.	+	.	ID=YNL147W-exon2;Name=LSM7-exon2;Parent=YNL147W
XIV	S-MART	transcript	351715	352017	.	+	.	seqedit=false;p_id=P3835;gene_id=YNL146W;tss_id=TSS1314;nbOverlaps=0;ID=YNL146W;Name=YNL146W
VII	S-MART	transcript	73340	73711	.	+	.	seqedit=false;p_id=P6558;gene_id=YGL226W;tss_id=TSS6108;nbOverlaps=0;ID=YGL226W;Name=MTC3
XIV	S-MART	transcript	349907	350671	.	-	.	seqedit=false;p_id=P4092;gene_id=YNL148C;tss_id=TSS1637;nbOverlaps=0;ID=YNL148C;Name=ALF1
XIV	S-MART	transcript	349367	349756	.	-	.	seqedit=false;p_id=P2083;gene_id=YNL149C;tss_id=TSS931;nbOverlaps=0;ID=YNL149C;Name=PGA2
XV	S-MART	transcript	274673	274773	.	+	.	seqedit=false;gene_id=tS(GCU)O;tss_id=TSS3746;nbOverlaps=0;ID=tS(GCU)O;Name=tS(GCU)O
XV	S-MART	exon	274673	274709	.	+	.	ID=tS(GCU)O-exon1;Name=tS(GCU)O-exon1;Parent=tS(GCU)O
XV	S-MART	exon	274729	274773	.	+	.	ID=tS(GCU)O-exon2;Name=tS(GCU)O-exon2;Parent=tS(GCU)O
XIV	S-MART	transcript	247461	249809	.	+	.	seqedit=false;p_id=P3666;gene_id=YNL212W;tss_id=TSS5659;nbOverlaps=0;ID=YNL212W;Name=VID27
XIV	S-MART	transcript	349251	349658	.	+	.	seqedit=false;p_id=P5794;gene_id=YNL150W;tss_id=TSS5271;nbOverlaps=0;ID=YNL150W;Name=YNL150W
VII	S-MART	transcript	69671	72547	.	+	.	seqedit=false;p_id=P1721;gene_id=YGL227W;tss_id=TSS2205;nbOverlaps=0;ID=YGL227W;Name=VID30
VI	S-MART	transcript	10301	10969	.	-	.	seqedit=false;p_id=P2298;gene_id=YFL060C;tss_id=TSS3565;nbOverlaps=0;ID=YFL060C;Name=SNO3
XII	S-MART	transcript	489573	489929	.	+	.	seqedit=false;p_id=P2801;gene_id=YLR162W;tss_id=TSS3870;nbOverlaps=0;ID=YLR162W;Name=YLR162W
XII	S-MART	transcript	491866	493254	.	-	.	seqedit=false;p_id=P4510;gene_id=YLR163C;tss_id=TSS3264;nbOverlaps=0;ID=YLR163C;Name=MAS1
XII	S-MART	transcript	492812	492925	.	+	.	seqedit=false;p_id=P5138;gene_id=YLR163W-A;tss_id=TSS5246;nbOverlaps=0;ID=YLR163W-A;Name=YLR163W-A
XII	S-MART	transcript	494494	495258	.	-	.	seqedit=false;p_id=P3180;gene_id=YLR165C;tss_id=TSS2342;nbOverlaps=0;ID=YLR165C;Name=PUS5
X	S-MART	transcript	56444	58813	.	-	.	seqedit=false;p_id=P4546;gene_id=YJL200C;tss_id=TSS6231;nbOverlaps=0;ID=YJL200C;Name=ACO2
XII	S-MART	transcript	493883	494389	.	+	.	seqedit=false;p_id=P3670;gene_id=YLR164W;tss_id=TSS6360;nbOverlaps=0;ID=YLR164W;Name=YLR164W
XVI	S-MART	transcript	120163	121167	.	-	.	seqedit=false;p_id=P3873;gene_id=YPL227C;tss_id=TSS4364;nbOverlaps=0;ID=YPL227C;Name=ALG5
VI	S-MART	transcript	3030	3338	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:17817:12043#0--HWUSI-EAS1656_0009_FC:3:14:3529:17516#0--HWUSI-EAS1656_000;p_id=P3845;gene_id=YFL065C;tss_id=TSS4851;nbOverlaps=57;ID=YFL065C;Name=YFL065C
XVI	S-MART	transcript	659182	661053	.	+	.	seqedit=false;p_id=P2894;gene_id=YPR048W;tss_id=TSS7044;nbOverlaps=0;ID=YPR048W;Name=TAH18
VI	S-MART	transcript	1437	2615	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:11690:21395#0--HWUSI-EAS1656_0009_FC:3:50:13876:6592#0--HWUSI-EAS1656_000;p_id=P6422;gene_id=YFL066C;tss_id=TSS448;nbOverlaps=133;ID=YFL066C;Name=YFL066C
VI	S-MART	transcript	836	1363	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P5664;gene_id=YFL067W;tss_id=TSS567;nbOverlaps=31;ID=YFL067W;Name=YFL067W
VI	S-MART	transcript	53	535	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P3755;gene_id=YFL068W;tss_id=TSS5262;nbOverlaps=68;ID=YFL068W;Name=YFL068W
VI	S-MART	transcript	150016	152535	.	+	.	seqedit=false;p_id=P2076;gene_id=YFR002W;tss_id=TSS2112;nbOverlaps=0;ID=YFR002W;Name=NIC96
VII	S-MART	transcript	64503	66959	.	-	.	seqedit=false;p_id=P5579;gene_id=YGL229C;tss_id=TSS233;nbOverlaps=0;ID=YGL229C;Name=SAP4
VI	S-MART	transcript	152657	153124	.	-	.	seqedit=false;p_id=P2278;gene_id=YFR003C;tss_id=TSS4963;nbOverlaps=0;ID=YFR003C;Name=YPI1
XII	S-MART	transcript	500733	501122	.	+	.	seqedit=false;p_id=P4201;gene_id=YLR171W;tss_id=TSS5364;nbOverlaps=0;ID=YLR171W;Name=YLR171W
XVI	S-MART	transcript	661137	664673	.	-	.	seqedit=false;p_id=P3695;gene_id=YPR049C;tss_id=TSS6049;nbOverlaps=0;ID=YPR049C;Name=ATG11
VI	S-MART	transcript	154527	155873	.	-	.	seqedit=false;p_id=P5648;gene_id=YFR005C;tss_id=TSS3112;nbOverlaps=0;ID=YFR005C;Name=SAD1
VI	S-MART	transcript	107799	108602	.	+	.	seqedit=false;p_id=P278;gene_id=YFL013W-A;tss_id=TSS5944;nbOverlaps=0;ID=YFL013W-A;Name=YFL013W-A
VI	S-MART	transcript	159299	160360	.	+	.	seqedit=false;p_id=P1920;gene_id=YFR007W;tss_id=TSS4686;nbOverlaps=0;ID=YFR007W;Name=YFH7
VI	S-MART	transcript	156145	157752	.	+	.	seqedit=false;p_id=P835;gene_id=YFR006W;tss_id=TSS2997;nbOverlaps=0;ID=YFR006W;Name=YFR006W
VI	S-MART	transcript	160535	161200	.	+	.	seqedit=false;p_id=P4973;gene_id=YFR008W;tss_id=TSS1335;nbOverlaps=0;ID=YFR008W;Name=FAR7
VII	S-MART	transcript	63048	63620	.	-	.	seqedit=false;p_id=P5174;gene_id=YGL231C;tss_id=TSS4450;nbOverlaps=0;ID=YGL231C;Name=EMC4
VI	S-MART	transcript	162488	164746	.	+	.	seqedit=false;p_id=P1803;gene_id=YFR009W;tss_id=TSS2662;nbOverlaps=0;ID=YFR009W;Name=GCN20
VI	S-MART	transcript	163875	164132	.	+	.	seqedit=false;p_id=P3588;gene_id=YFR009W-A;tss_id=TSS4783;nbOverlaps=0;ID=YFR009W-A;Name=YFR009W-A
XII	S-MART	transcript	730825	731559	.	+	.	seqedit=false;p_id=P5464;gene_id=YLR301W;tss_id=TSS6081;nbOverlaps=0;ID=YLR301W;Name=HRI1
VI	S-MART	transcript	165067	166566	.	+	.	seqedit=false;p_id=P261;gene_id=YFR010W;tss_id=TSS2279;nbOverlaps=0;ID=YFR010W;Name=UBP6
XII	S-MART	transcript	514108	514713	.	-	.	seqedit=false;p_id=P4782;gene_id=YLR179C;tss_id=TSS3232;nbOverlaps=0;ID=YLR179C;Name=YLR179C
VI	S-MART	transcript	166746	167258	.	-	.	seqedit=false;p_id=P1770;gene_id=YFR011C;tss_id=TSS3616;nbOverlaps=0;ID=YFR011C;Name=AIM13
VI	S-MART	transcript	167888	168496	.	+	.	seqedit=false;p_id=P501;gene_id=YFR012W;tss_id=TSS1318;nbOverlaps=0;ID=YFR012W;Name=DCV1
VII	S-MART	transcript	63772	64215	.	-	.	seqedit=false;p_id=P2319;gene_id=YGL230C;tss_id=TSS2439;nbOverlaps=0;ID=YGL230C;Name=YGL230C
VI	S-MART	transcript	169224	169310	.	+	.	seqedit=false;p_id=P1870;gene_id=YFR012W-A;tss_id=TSS3767;nbOverlaps=0;ID=YFR012W-A;Name=YFR012W-A
VI	S-MART	transcript	169922	172285	.	+	.	seqedit=false;p_id=P502;gene_id=YFR013W;tss_id=TSS4825;nbOverlaps=0;ID=YFR013W;Name=IOC3
XVI	S-MART	transcript	664953	665366	.	-	.	seqedit=false;p_id=P2282;gene_id=YPR050C;tss_id=TSS3289;nbOverlaps=0;ID=YPR050C;Name=YPR050C
VI	S-MART	transcript	172537	173877	.	-	.	seqedit=false;p_id=P2293;gene_id=YFR014C;tss_id=TSS2063;nbOverlaps=0;ID=YFR014C;Name=CMK1
VI	S-MART	transcript	174265	176391	.	-	.	seqedit=false;p_id=P5351;gene_id=YFR015C;tss_id=TSS1337;nbOverlaps=0;ID=YFR015C;Name=GSY1
XVI	S-MART	transcript	689565	689646	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:6969:5946#0--HWUSI-EAS1656_0009_FC:3:61:10124:4226#0--HWUSI-EAS1656_0009;gene_id=tS(UGA)P;tss_id=TSS2152;nbOverlaps=35;ID=tS(UGA)P;Name=SUP16
VI	S-MART	transcript	182274	182861	.	-	.	seqedit=false;p_id=P3985;gene_id=YFR017C;tss_id=TSS1035;nbOverlaps=0;ID=YFR017C;Name=IGD1
VI	S-MART	transcript	177042	180743	.	-	.	seqedit=false;p_id=P1112;gene_id=YFR016C;tss_id=TSS415;nbOverlaps=0;ID=YFR016C;Name=YFR016C
VII	S-MART	transcript	62075	63002	.	+	.	seqedit=false;p_id=P2300;gene_id=YGL232W;tss_id=TSS50;nbOverlaps=0;ID=YGL232W;Name=TAN1
VII	S-MART	exon	62075	62131	.	+	.	ID=YGL232W-exon1;Name=TAN1-exon1;Parent=YGL232W
VII	S-MART	exon	62190	63002	.	+	.	ID=YGL232W-exon2;Name=TAN1-exon2;Parent=YGL232W
XII	S-MART	transcript	524865	527945	.	+	.	seqedit=false;p_id=P3793;gene_id=YLR187W;tss_id=TSS2016;nbOverlaps=0;ID=YLR187W;Name=SKG3
VI	S-MART	transcript	183131	184222	.	-	.	seqedit=false;p_id=P2804;gene_id=YFR018C;tss_id=TSS1186;nbOverlaps=0;ID=YFR018C;Name=YFR018C
XVI	S-MART	transcript	665693	665974	.	-	.	seqedit=false;p_id=P4246;gene_id=YPR052C;tss_id=TSS1916;nbOverlaps=0;ID=YPR052C;Name=NHP6A
VI	S-MART	transcript	194812	196314	.	+	.	seqedit=false;p_id=P2267;gene_id=YFR021W;tss_id=TSS250;nbOverlaps=0;ID=YFR021W;Name=ATG18
VI	S-MART	transcript	192737	193435	.	+	.	seqedit=false;p_id=P6372;gene_id=YFR020W;tss_id=TSS1262;nbOverlaps=0;ID=YFR020W;Name=YFR020W
Mito	S-MART	transcript	48201	48290	.	+	.	seqedit=false;gene_id=tS(UGA)Q2;tss_id=TSS5903;nbOverlaps=0;ID=tS(UGA)Q2;Name=tS(UGA)Q2
VI	S-MART	transcript	196833	199034	.	+	.	seqedit=false;p_id=P1726;gene_id=YFR022W;tss_id=TSS4231;nbOverlaps=0;ID=YFR022W;Name=ROG3
XII	S-MART	transcript	538792	539589	.	-	.	seqedit=false;p_id=P2680;gene_id=YLR192C;tss_id=TSS6948;nbOverlaps=0;ID=YLR192C;Name=HCR1
XII	S-MART	transcript	540009	540536	.	-	.	seqedit=false;p_id=P2428;gene_id=YLR193C;tss_id=TSS4755;nbOverlaps=0;ID=YLR193C;Name=UPS1
XVI	S-MART	transcript	118382	120031	.	+	.	seqedit=false;p_id=P3244;gene_id=YPL228W;tss_id=TSS6149;nbOverlaps=0;ID=YPL228W;Name=CET1
XII	S-MART	transcript	541937	543304	.	-	.	seqedit=false;p_id=P6059;gene_id=YLR195C;tss_id=TSS4379;nbOverlaps=0;ID=YLR195C;Name=NMT1
XVI	S-MART	transcript	666280	667446	.	+	.	seqedit=false;p_id=P2040;gene_id=YPR054W;tss_id=TSS6403;nbOverlaps=0;ID=YPR054W;Name=SMK1
XII	S-MART	transcript	540809	541573	.	-	.	seqedit=false;p_id=P5826;gene_id=YLR194C;tss_id=TSS5780;nbOverlaps=0;ID=YLR194C;Name=YLR194C
XII	S-MART	transcript	543968	545698	.	+	.	seqedit=false;p_id=P2734;gene_id=YLR196W;tss_id=TSS6713;nbOverlaps=0;ID=YLR196W;Name=PWP1
IX	S-MART	transcript	175031	175103	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)I1;tss_id=TSS2951;nbOverlaps=4;ID=tT(AGU)I1;Name=tT(AGU)I1
XII	S-MART	transcript	546097	547611	.	+	.	seqedit=false;p_id=P2589;gene_id=YLR197W;tss_id=TSS1688;nbOverlaps=0;ID=YLR197W;Name=NOP56
VI	S-MART	transcript	207452	208297	.	+	.	seqedit=false;p_id=P4818;gene_id=YFR027W;tss_id=TSS427;nbOverlaps=0;ID=YFR027W;Name=ECO1
VI	S-MART	transcript	208413	210068	.	-	.	seqedit=false;p_id=P4637;gene_id=YFR028C;tss_id=TSS3408;nbOverlaps=0;ID=YFR028C;Name=CDC14
VI	S-MART	transcript	210937	212973	.	+	.	seqedit=false;p_id=P1327;gene_id=YFR029W;tss_id=TSS2351;nbOverlaps=0;ID=YFR029W;Name=PTR3
XVI	S-MART	transcript	665788	666243	.	-	.	seqedit=false;p_id=P5707;gene_id=YPR053C;tss_id=TSS5690;nbOverlaps=0;ID=YPR053C;Name=YPR053C
VI	S-MART	transcript	213312	216419	.	+	.	seqedit=false;p_id=P6338;gene_id=YFR030W;tss_id=TSS6261;nbOverlaps=0;ID=YFR030W;Name=MET10
VI	S-MART	transcript	107256	107585	.	+	.	seqedit=false;p_id=P4184;gene_id=YFL014W;tss_id=TSS1001;nbOverlaps=0;ID=YFL014W;Name=HSP12
VI	S-MART	transcript	216594	220106	.	-	.	seqedit=false;p_id=P2181;gene_id=YFR031C;tss_id=TSS3273;nbOverlaps=0;ID=YFR031C;Name=SMC2
II	S-MART	transcript	266378	266450	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)B;tss_id=TSS755;nbOverlaps=4;ID=tT(AGU)B;Name=tT(AGU)B
VI	S-MART	transcript	220507	221418	.	-	.	seqedit=false;p_id=P2058;gene_id=YFR031C-A;tss_id=TSS1349;nbOverlaps=0;ID=YFR031C-A;Name=RPL2A
VI	S-MART	exon	220507	221267	.	-	.	ID=YFR031C-A-exon1;Name=RPL2A-exon1;Parent=YFR031C-A
VI	S-MART	exon	221415	221418	.	-	.	ID=YFR031C-A-exon2;Name=RPL2A-exon2;Parent=YFR031C-A
XII	S-MART	transcript	550650	551960	.	-	.	seqedit=false;p_id=P1237;gene_id=YLR203C;tss_id=TSS3628;nbOverlaps=0;ID=YLR203C;Name=MSS51
XII	S-MART	transcript	550194	550636	.	-	.	seqedit=false;p_id=P1053;gene_id=YLR202C;tss_id=TSS5243;nbOverlaps=0;ID=YLR202C;Name=YLR202C
XII	S-MART	exon	550194	550458	.	-	.	ID=YLR202C-exon1;Name=YLR202C-exon1;Parent=YLR202C
XII	S-MART	exon	550575	550636	.	-	.	ID=YLR202C-exon2;Name=YLR202C-exon2;Parent=YLR202C
VI	S-MART	transcript	222090	222959	.	-	.	seqedit=false;p_id=P1474;gene_id=YFR032C;tss_id=TSS3655;nbOverlaps=0;ID=YFR032C;Name=RRT5
XVI	S-MART	transcript	667676	670873	.	+	.	seqedit=false;p_id=P3368;gene_id=YPR055W;tss_id=TSS3244;nbOverlaps=0;ID=YPR055W;Name=SEC8
VI	S-MART	transcript	223258	223437	.	-	.	seqedit=false;p_id=P5175;gene_id=YFR032C-A;tss_id=TSS4181;nbOverlaps=0;ID=YFR032C-A;Name=RPL29
XII	S-MART	transcript	552270	552605	.	+	.	seqedit=false;p_id=P5685;gene_id=YLR204W;tss_id=TSS2729;nbOverlaps=0;ID=YLR204W;Name=QRI5
III	S-MART	transcript	295484	295556	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)C;tss_id=TSS5163;nbOverlaps=4;ID=tT(AGU)C;Name=tT(AGU)C
XII	S-MART	transcript	552724	553677	.	-	.	seqedit=false;p_id=P5713;gene_id=YLR205C;tss_id=TSS4185;nbOverlaps=0;ID=YLR205C;Name=HMX1
VI	S-MART	transcript	225020	225958	.	-	.	seqedit=false;p_id=P1158;gene_id=YFR034C;tss_id=TSS3059;nbOverlaps=0;ID=YFR034C;Name=PHO4
VII	S-MART	transcript	56482	58890	.	+	.	seqedit=false;p_id=P3876;gene_id=YGL234W;tss_id=TSS3190;nbOverlaps=0;ID=YGL234W;Name=ADE5,7
XII	S-MART	transcript	556788	559289	.	+	.	seqedit=false;p_id=P4405;gene_id=YLR207W;tss_id=TSS184;nbOverlaps=0;ID=YLR207W;Name=HRD3
XII	S-MART	transcript	559551	560444	.	+	.	seqedit=false;p_id=P5763;gene_id=YLR208W;tss_id=TSS4056;nbOverlaps=0;ID=YLR208W;Name=SEC13
XVI	S-MART	transcript	671126	672142	.	+	.	seqedit=false;p_id=P6423;gene_id=YPR056W;tss_id=TSS5829;nbOverlaps=0;ID=YPR056W;Name=TFB4
VI	S-MART	transcript	226121	226465	.	-	.	seqedit=false;p_id=P438;gene_id=YFR035C;tss_id=TSS1428;nbOverlaps=0;ID=YFR035C;Name=YFR035C
XII	S-MART	transcript	562008	563390	.	+	.	seqedit=false;p_id=P686;gene_id=YLR210W;tss_id=TSS5167;nbOverlaps=0;ID=YLR210W;Name=CLB4
IV	S-MART	transcript	434264	434336	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)D;tss_id=TSS1410;nbOverlaps=4;ID=tT(AGU)D;Name=tT(AGU)D
VI	S-MART	transcript	227513	229186	.	-	.	seqedit=false;p_id=P1697;gene_id=YFR037C;tss_id=TSS6868;nbOverlaps=0;ID=YFR037C;Name=RSC8
VI	S-MART	transcript	229380	231941	.	+	.	seqedit=false;p_id=P1630;gene_id=YFR038W;tss_id=TSS3505;nbOverlaps=0;ID=YFR038W;Name=IRC5
VII	S-MART	transcript	53787	55796	.	-	.	seqedit=false;p_id=P3500;gene_id=YGL236C;tss_id=TSS4949;nbOverlaps=0;ID=YGL236C;Name=MTO1
VI	S-MART	transcript	234242	237250	.	+	.	seqedit=false;p_id=P6224;gene_id=YFR040W;tss_id=TSS3000;nbOverlaps=0;ID=YFR040W;Name=SAP155
VI	S-MART	transcript	232012	233544	.	-	.	seqedit=false;p_id=P4056;gene_id=YFR039C;tss_id=TSS6804;nbOverlaps=0;ID=YFR039C;Name=YFR039C
XVI	S-MART	transcript	672471	673496	.	+	.	seqedit=false;p_id=P1792;gene_id=YPR057W;tss_id=TSS5833;nbOverlaps=0;ID=YPR057W;Name=BRR1
XII	S-MART	transcript	566654	567922	.	-	.	seqedit=false;p_id=P2841;gene_id=YLR213C;tss_id=TSS1573;nbOverlaps=0;ID=YLR213C;Name=CRR1
XII	S-MART	transcript	568567	570627	.	+	.	seqedit=false;p_id=P1159;gene_id=YLR214W;tss_id=TSS5622;nbOverlaps=0;ID=YLR214W;Name=FRE1
XVI	S-MART	transcript	358000	359406	.	-	.	seqedit=false;p_id=P4553;gene_id=YPL103C;tss_id=TSS4151;nbOverlaps=0;ID=YPL103C;Name=FMP30
XIV	S-MART	transcript	129522	135383	.	-	.	seqedit=false;p_id=P1532;gene_id=YNL271C;tss_id=TSS1566;nbOverlaps=0;ID=YNL271C;Name=BNI1
VII	S-MART	transcript	55279	55815	.	+	.	seqedit=false;p_id=P2303;gene_id=YGL235W;tss_id=TSS1043;nbOverlaps=0;ID=YGL235W;Name=YGL235W
XIV	S-MART	transcript	126805	129084	.	-	.	seqedit=false;p_id=P6512;gene_id=YNL272C;tss_id=TSS4376;nbOverlaps=0;ID=YNL272C;Name=SEC2
XIV	S-MART	transcript	122883	126599	.	+	.	seqedit=false;p_id=P5643;gene_id=YNL273W;tss_id=TSS5914;nbOverlaps=0;ID=YNL273W;Name=TOF1
XVI	S-MART	transcript	673751	674674	.	+	.	seqedit=false;p_id=P6362;gene_id=YPR058W;tss_id=TSS2740;nbOverlaps=0;ID=YPR058W;Name=YMC1
XIV	S-MART	transcript	121118	122170	.	-	.	seqedit=false;p_id=P916;gene_id=YNL274C;tss_id=TSS6912;nbOverlaps=0;ID=YNL274C;Name=GOR1
XIV	S-MART	transcript	119268	120998	.	+	.	seqedit=false;p_id=P2782;gene_id=YNL275W;tss_id=TSS4006;nbOverlaps=0;ID=YNL275W;Name=BOR1
XIV	S-MART	transcript	117349	118809	.	+	.	seqedit=false;p_id=P5095;gene_id=YNL277W;tss_id=TSS6603;nbOverlaps=0;ID=YNL277W;Name=MET2
XV	S-MART	transcript	652010	653884	.	-	.	seqedit=false;p_id=P5471;gene_id=YOR171C;tss_id=TSS3298;nbOverlaps=0;ID=YOR171C;Name=LCB4
XIV	S-MART	transcript	118431	118826	.	-	.	seqedit=false;p_id=P6614;gene_id=YNL276C;tss_id=TSS3621;nbOverlaps=0;ID=YNL276C;Name=YNL276C
VII	S-MART	transcript	52731	53528	.	-	.	seqedit=false;p_id=P2977;gene_id=YGL237C;tss_id=TSS6422;nbOverlaps=0;ID=YGL237C;Name=HAP2
XIV	S-MART	transcript	116679	116867	.	+	.	seqedit=false;p_id=P1032;gene_id=YNL277W-A;tss_id=TSS3374;nbOverlaps=0;ID=YNL277W-A;Name=YNL277W-A
XIV	S-MART	transcript	113271	116453	.	+	.	seqedit=false;p_id=P1509;gene_id=YNL278W;tss_id=TSS1031;nbOverlaps=0;ID=YNL278W;Name=CAF120
XVI	S-MART	transcript	674861	675631	.	-	.	seqedit=false;p_id=P3559;gene_id=YPR060C;tss_id=TSS5651;nbOverlaps=0;ID=YPR060C;Name=ARO7
XIV	S-MART	transcript	110917	112902	.	+	.	seqedit=false;p_id=P6320;gene_id=YNL279W;tss_id=TSS4327;nbOverlaps=0;ID=YNL279W;Name=PRM1
VI	S-MART	transcript	106415	106732	.	+	.	seqedit=false;p_id=P2711;gene_id=YFL015W-A;tss_id=TSS48;nbOverlaps=0;ID=YFL015W-A;Name=YFL015W-A
XIV	S-MART	transcript	109095	110411	.	-	.	seqedit=false;p_id=P2755;gene_id=YNL280C;tss_id=TSS5052;nbOverlaps=0;ID=YNL280C;Name=ERG24
XIV	S-MART	transcript	104805	104877	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_0009_FC:3:69:2682:1692#0--HWUSI-EAS1656_0009;gene_id=tT(AGU)N1;tss_id=TSS13;nbOverlaps=3;ID=tT(AGU)N1;Name=tT(AGU)N1
XIV	S-MART	transcript	108467	108928	.	+	.	seqedit=false;p_id=P2486;gene_id=YNL281W;tss_id=TSS2725;nbOverlaps=0;ID=YNL281W;Name=HCH1
XIV	S-MART	transcript	107687	108274	.	+	.	seqedit=false;p_id=P5441;gene_id=YNL282W;tss_id=TSS1627;nbOverlaps=0;ID=YNL282W;Name=POP3
VII	S-MART	transcript	49552	52434	.	+	.	seqedit=false;p_id=P5009;gene_id=YGL238W;tss_id=TSS4134;nbOverlaps=0;ID=YGL238W;Name=CSE1
XIV	S-MART	transcript	105184	106695	.	-	.	seqedit=false;p_id=P5462;gene_id=YNL283C;tss_id=TSS7024;nbOverlaps=0;ID=YNL283C;Name=WSC2
XIV	S-MART	transcript	103134	104102	.	-	.	seqedit=false;p_id=P6489;gene_id=YNL284C;tss_id=TSS986;nbOverlaps=0;ID=YNL284C;Name=MRPL10
XVI	S-MART	transcript	674314	674700	.	-	.	seqedit=false;p_id=P6290;gene_id=YPR059C;tss_id=TSS691;nbOverlaps=0;ID=YPR059C;Name=YPR059C
XIV	S-MART	transcript	100910	102232	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_0009_FC:3:17:16317:5237#0--HWUSI-EAS1656_000;p_id=P2048;gene_id=YNL284C-A;tss_id=TSS6879;nbOverlaps=22;ID=YNL284C-A;Name=YNL284C-A
XIV	S-MART	transcript	96964	102232	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P1047;gene_id=YNL284C-B;tss_id=TSS6879;nbOverlaps=477;ID=YNL284C-B;Name=YNL284C-B
XIV	S-MART	exon	96964	100926	.	-	.	ID=YNL284C-B-exon1;Name=YNL284C-B-exon1;Parent=YNL284C-B
XIV	S-MART	exon	100928	102232	.	-	.	ID=YNL284C-B-exon2;Name=YNL284C-B-exon2;Parent=YNL284C-B
X	S-MART	transcript	59100	59172	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_0009_FC:3:69:2682:1692#0--HWUSI-EAS1656_0009;gene_id=tT(AGU)J;tss_id=TSS3564;nbOverlaps=3;ID=tT(AGU)J;Name=tT(AGU)J
VII	S-MART	transcript	48613	49365	.	+	.	seqedit=false;p_id=P5597;gene_id=YGL240W;tss_id=TSS436;nbOverlaps=0;ID=YGL240W;Name=DOC1
XIV	S-MART	transcript	95223	96080	.	+	.	seqedit=false;p_id=P3488;gene_id=YNL286W;tss_id=TSS5707;nbOverlaps=0;ID=YNL286W;Name=CUS2
XIV	S-MART	transcript	96173	96544	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:13609:5485#0--HWUSI-EAS1656_0009_FC:3:94:7466:7787#0--HWUSI-EAS1656_0009_;p_id=P1212;gene_id=YNL285W;tss_id=TSS828;nbOverlaps=3;ID=YNL285W;Name=YNL285W
XVI	S-MART	transcript	675977	676882	.	-	.	seqedit=false;p_id=P1530;gene_id=YPR061C;tss_id=TSS4592;nbOverlaps=0;ID=YPR061C;Name=JID1
XIV	S-MART	transcript	91994	94801	.	+	.	seqedit=false;p_id=P3966;gene_id=YNL287W;tss_id=TSS6810;nbOverlaps=0;ID=YNL287W;Name=SEC21
XIV	S-MART	transcript	90303	91424	.	+	.	seqedit=false;p_id=P5496;gene_id=YNL288W;tss_id=TSS3688;nbOverlaps=0;ID=YNL288W;Name=CAF40
XIV	S-MART	transcript	560693	560765	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_0009_FC:3:69:2682:1692#0--HWUSI-EAS1656_0009;gene_id=tT(AGU)N2;tss_id=TSS2072;nbOverlaps=3;ID=tT(AGU)N2;Name=tT(AGU)N2
XIV	S-MART	transcript	87897	88736	.	+	.	seqedit=false;p_id=P5620;gene_id=YNL289W;tss_id=TSS5426;nbOverlaps=0;ID=YNL289W;Name=PCL1
XIV	S-MART	transcript	86218	87240	.	+	.	seqedit=false;p_id=P6503;gene_id=YNL290W;tss_id=TSS4156;nbOverlaps=0;ID=YNL290W;Name=RFC3
VII	S-MART	transcript	49431	49745	.	-	.	seqedit=false;p_id=P4174;gene_id=YGL239C;tss_id=TSS2512;nbOverlaps=0;ID=YGL239C;Name=YGL239C
XIV	S-MART	transcript	84169	85815	.	-	.	seqedit=false;p_id=P1200;gene_id=YNL291C;tss_id=TSS352;nbOverlaps=0;ID=YNL291C;Name=MID1
XIV	S-MART	transcript	82806	84017	.	+	.	seqedit=false;p_id=P4768;gene_id=YNL292W;tss_id=TSS4268;nbOverlaps=0;ID=YNL292W;Name=PUS4
XVI	S-MART	transcript	677165	677641	.	+	.	seqedit=false;p_id=P2214;gene_id=YPR062W;tss_id=TSS2288;nbOverlaps=0;ID=YPR062W;Name=FCY1
XIV	S-MART	transcript	80640	82541	.	+	.	seqedit=false;p_id=P5335;gene_id=YNL293W;tss_id=TSS2503;nbOverlaps=0;ID=YNL293W;Name=MSB3
XIV	S-MART	transcript	78659	80260	.	-	.	seqedit=false;p_id=P1250;gene_id=YNL294C;tss_id=TSS752;nbOverlaps=0;ID=YNL294C;Name=RIM21
XV	S-MART	transcript	113802	113874	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)O1;tss_id=TSS929;nbOverlaps=4;ID=tT(AGU)O1;Name=tT(AGU)O1
XIV	S-MART	transcript	71673	76583	.	-	.	seqedit=false;p_id=P345;gene_id=YNL297C;tss_id=TSS2505;nbOverlaps=0;ID=YNL297C;Name=MON2
XIV	S-MART	transcript	76946	78520	.	+	.	seqedit=false;p_id=P5094;gene_id=YNL295W;tss_id=TSS2838;nbOverlaps=0;ID=YNL295W;Name=YNL295W
VII	S-MART	transcript	45445	48459	.	+	.	seqedit=false;p_id=P4970;gene_id=YGL241W;tss_id=TSS5173;nbOverlaps=0;ID=YGL241W;Name=KAP114
XIV	S-MART	transcript	76273	76587	.	+	.	seqedit=false;p_id=P5731;gene_id=YNL296W;tss_id=TSS275;nbOverlaps=0;ID=YNL296W;Name=YNL296W
XIV	S-MART	transcript	68915	71443	.	+	.	seqedit=false;p_id=P3357;gene_id=YNL298W;tss_id=TSS1767;nbOverlaps=0;ID=YNL298W;Name=CLA4
XVI	S-MART	transcript	679693	680799	.	+	.	seqedit=false;p_id=P1072;gene_id=YPR065W;tss_id=TSS2888;nbOverlaps=0;ID=YPR065W;Name=ROX1
XIV	S-MART	transcript	66517	68445	.	+	.	seqedit=false;p_id=P371;gene_id=YNL299W;tss_id=TSS6756;nbOverlaps=0;ID=YNL299W;Name=TRF5
XIV	S-MART	transcript	65744	66052	.	+	.	seqedit=false;p_id=P4439;gene_id=YNL300W;tss_id=TSS1610;nbOverlaps=0;ID=YNL300W;Name=TOS6
XV	S-MART	transcript	354041	354113	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:40:17058:11486#0--HWUSI-EAS1656_0009_FC:3:109:4459:19261#0--HWUSI-EAS1656_00;gene_id=tT(AGU)O2;tss_id=TSS3744;nbOverlaps=4;ID=tT(AGU)O2;Name=tT(AGU)O2
XIV	S-MART	transcript	63570	64562	.	-	.	seqedit=false;p_id=P31;gene_id=YNL301C;tss_id=TSS2349;nbOverlaps=0;ID=YNL301C;Name=RPL18B
XIV	S-MART	exon	63570	64018	.	-	.	ID=YNL301C-exon1;Name=RPL18B-exon1;Parent=YNL301C
XIV	S-MART	exon	64451	64562	.	-	.	ID=YNL301C-exon2;Name=RPL18B-exon2;Parent=YNL301C
VII	S-MART	transcript	43307	44509	.	+	.	seqedit=false;p_id=P2957;gene_id=YGL243W;tss_id=TSS6877;nbOverlaps=0;ID=YGL243W;Name=TAD1
XIV	S-MART	transcript	61958	62943	.	-	.	seqedit=false;p_id=P2404;gene_id=YNL302C;tss_id=TSS3043;nbOverlaps=0;ID=YNL302C;Name=RPS19B
XIV	S-MART	exon	61958	62372	.	-	.	ID=YNL302C-exon1;Name=RPS19B-exon1;Parent=YNL302C
XIV	S-MART	exon	62924	62943	.	-	.	ID=YNL302C-exon2;Name=RPS19B-exon2;Parent=YNL302C
XVI	S-MART	transcript	677812	678320	.	-	.	seqedit=false;p_id=P3243;gene_id=YPR063C;tss_id=TSS5435;nbOverlaps=0;ID=YPR063C;Name=YPR063C
XVI	S-MART	exon	677812	678193	.	-	.	ID=YPR063C-exon1;Name=YPR063C-exon1;Parent=YPR063C
XVI	S-MART	exon	678280	678320	.	-	.	ID=YPR063C-exon2;Name=YPR063C-exon2;Parent=YPR063C
XI	S-MART	transcript	46735	46806	.	-	.	seqedit=false;gene_id=tT(CGU)K;tss_id=TSS241;nbOverlaps=0;ID=tT(CGU)K;Name=TRT2
XIV	S-MART	transcript	60297	61550	.	+	.	seqedit=false;p_id=P1125;gene_id=YNL304W;tss_id=TSS4525;nbOverlaps=0;ID=YNL304W;Name=YPT11
XIV	S-MART	transcript	61510	61857	.	+	.	seqedit=false;p_id=P1579;gene_id=YNL303W;tss_id=TSS3875;nbOverlaps=0;ID=YNL303W;Name=YNL303W
VII	S-MART	transcript	44652	45197	.	-	.	seqedit=false;p_id=P1103;gene_id=YGL242C;tss_id=TSS5873;nbOverlaps=0;ID=YGL242C;Name=YGL242C
XIV	S-MART	transcript	58898	59791	.	-	.	seqedit=false;p_id=P5168;gene_id=YNL305C;tss_id=TSS4082;nbOverlaps=0;ID=YNL305C;Name=BXI1
XIV	S-MART	transcript	58155	58808	.	+	.	seqedit=false;p_id=P1447;gene_id=YNL306W;tss_id=TSS3353;nbOverlaps=0;ID=YNL306W;Name=MRPS18
XIV	S-MART	transcript	56446	57573	.	-	.	seqedit=false;p_id=P6008;gene_id=YNL307C;tss_id=TSS211;nbOverlaps=0;ID=YNL307C;Name=MCK1
XIV	S-MART	transcript	54122	55897	.	-	.	seqedit=false;p_id=P6309;gene_id=YNL308C;tss_id=TSS1516;nbOverlaps=0;ID=YNL308C;Name=KRI1
VII	S-MART	transcript	661749	661820	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:12762:11255#0--HWUSI-EAS1656_0009_FC:3:105:2987:16080#0--HWUSI-EAS1656_0;gene_id=tT(UGU)G1;tss_id=TSS5247;nbOverlaps=8;ID=tT(UGU)G1;Name=tT(UGU)G1
XIV	S-MART	transcript	52662	53924	.	+	.	seqedit=false;p_id=P1412;gene_id=YNL309W;tss_id=TSS4731;nbOverlaps=0;ID=YNL309W;Name=STB1
XIV	S-MART	transcript	51907	52431	.	-	.	seqedit=false;p_id=P3319;gene_id=YNL310C;tss_id=TSS2431;nbOverlaps=0;ID=YNL310C;Name=ZIM17
VII	S-MART	transcript	41498	43174	.	+	.	seqedit=false;p_id=P5698;gene_id=YGL244W;tss_id=TSS4145;nbOverlaps=0;ID=YGL244W;Name=RTF1
XIV	S-MART	transcript	49397	51688	.	-	.	seqedit=false;p_id=P4075;gene_id=YNL311C;tss_id=TSS2316;nbOverlaps=0;ID=YNL311C;Name=SKP2
XIV	S-MART	transcript	48287	49216	.	+	.	seqedit=false;p_id=P5130;gene_id=YNL312W;tss_id=TSS3715;nbOverlaps=0;ID=YNL312W;Name=RFA2
XIV	S-MART	exon	48287	48293	.	+	.	ID=YNL312W-exon1;Name=RFA2-exon1;Parent=YNL312W
XIV	S-MART	exon	48402	49216	.	+	.	ID=YNL312W-exon2;Name=RFA2-exon2;Parent=YNL312W
XIV	S-MART	transcript	45308	48022	.	-	.	seqedit=false;p_id=P3721;gene_id=YNL313C;tss_id=TSS6189;nbOverlaps=0;ID=YNL313C;Name=EMW1
XIV	S-MART	transcript	44447	45214	.	+	.	seqedit=false;p_id=P1399;gene_id=YNL314W;tss_id=TSS24;nbOverlaps=0;ID=YNL314W;Name=DAL82
VII	S-MART	transcript	39023	41149	.	+	.	seqedit=false;p_id=P6509;gene_id=YGL245W;tss_id=TSS234;nbOverlaps=0;ID=YGL245W;Name=GUS1
XIV	S-MART	transcript	43324	44280	.	-	.	seqedit=false;p_id=P88;gene_id=YNL315C;tss_id=TSS4292;nbOverlaps=0;ID=YNL315C;Name=ATP11
XIV	S-MART	transcript	42071	43075	.	-	.	seqedit=false;p_id=P1640;gene_id=YNL316C;tss_id=TSS1946;nbOverlaps=0;ID=YNL316C;Name=PHA2
XVI	S-MART	transcript	678951	679370	.	+	.	seqedit=false;p_id=P5799;gene_id=YPR064W;tss_id=TSS1154;nbOverlaps=0;ID=YPR064W;Name=YPR064W
XIV	S-MART	transcript	40619	42016	.	+	.	seqedit=false;p_id=P3452;gene_id=YNL317W;tss_id=TSS5075;nbOverlaps=0;ID=YNL317W;Name=PFS2
XIV	S-MART	transcript	38707	40329	.	-	.	seqedit=false;p_id=P4968;gene_id=YNL318C;tss_id=TSS5230;nbOverlaps=0;ID=YNL318C;Name=HXT14
XIV	S-MART	transcript	34696	37422	.	+	.	seqedit=false;p_id=P3391;gene_id=YNL321W;tss_id=TSS5838;nbOverlaps=0;ID=YNL321W;Name=VNX1
XIV	S-MART	transcript	38642	39082	.	+	.	seqedit=false;p_id=P5509;gene_id=YNL319W;tss_id=TSS4816;nbOverlaps=0;ID=YNL319W;Name=YNL319W
VII	S-MART	transcript	37617	38780	.	-	.	seqedit=false;p_id=P2657;gene_id=YGL246C;tss_id=TSS3540;nbOverlaps=0;ID=YGL246C;Name=RAI1
XIV	S-MART	transcript	37700	38554	.	+	.	seqedit=false;p_id=P5756;gene_id=YNL320W;tss_id=TSS1662;nbOverlaps=0;ID=YNL320W;Name=YNL320W
XIV	S-MART	transcript	33294	34235	.	-	.	seqedit=false;p_id=P5114;gene_id=YNL322C;tss_id=TSS3740;nbOverlaps=0;ID=YNL322C;Name=KRE1
XVI	S-MART	transcript	681213	682112	.	+	.	seqedit=false;p_id=P6205;gene_id=YPR066W;tss_id=TSS1097;nbOverlaps=0;ID=YPR066W;Name=UBA3
IV	S-MART	transcript	915530	915928	.	+	.	seqedit=false;p_id=P845;gene_id=YDR225W;tss_id=TSS1;nbOverlaps=0;ID=YDR225W;Name=HTA1
IV	S-MART	transcript	916486	917154	.	+	.	seqedit=false;p_id=P3314;gene_id=YDR226W;tss_id=TSS3918;nbOverlaps=0;ID=YDR226W;Name=ADK1
IV	S-MART	transcript	917571	921647	.	+	.	seqedit=false;p_id=P4551;gene_id=YDR227W;tss_id=TSS5489;nbOverlaps=0;ID=YDR227W;Name=SIR4
VII	S-MART	transcript	36933	37526	.	+	.	seqedit=false;p_id=P3461;gene_id=YGL247W;tss_id=TSS855;nbOverlaps=0;ID=YGL247W;Name=BRR6
IV	S-MART	transcript	921926	923806	.	-	.	seqedit=false;p_id=P2961;gene_id=YDR228C;tss_id=TSS2930;nbOverlaps=0;ID=YDR228C;Name=PCF11
IV	S-MART	transcript	924785	926146	.	+	.	seqedit=false;p_id=P3608;gene_id=YDR229W;tss_id=TSS2987;nbOverlaps=0;ID=YDR229W;Name=IVY1
XVI	S-MART	transcript	682220	682777	.	+	.	seqedit=false;p_id=P5889;gene_id=YPR067W;tss_id=TSS1339;nbOverlaps=0;ID=YPR067W;Name=ISA2
IV	S-MART	transcript	926293	926910	.	-	.	seqedit=false;p_id=P5802;gene_id=YDR231C;tss_id=TSS3707;nbOverlaps=0;ID=YDR231C;Name=COX20
IV	S-MART	transcript	926223	926570	.	+	.	seqedit=false;p_id=P6124;gene_id=YDR230W;tss_id=TSS3175;nbOverlaps=0;ID=YDR230W;Name=YDR230W
IV	S-MART	transcript	927452	929098	.	+	.	seqedit=false;p_id=P6092;gene_id=YDR232W;tss_id=TSS2583;nbOverlaps=0;ID=YDR232W;Name=HEM1
IV	S-MART	transcript	929470	930357	.	-	.	seqedit=false;p_id=P4871;gene_id=YDR233C;tss_id=TSS6213;nbOverlaps=0;ID=YDR233C;Name=RTN1
VII	S-MART	transcript	35653	36762	.	+	.	seqedit=false;p_id=P5777;gene_id=YGL248W;tss_id=TSS2325;nbOverlaps=0;ID=YGL248W;Name=PDE1
IV	S-MART	transcript	931129	933210	.	+	.	seqedit=false;p_id=P4518;gene_id=YDR234W;tss_id=TSS1750;nbOverlaps=0;ID=YDR234W;Name=LYS4
IV	S-MART	transcript	933504	935138	.	+	.	seqedit=false;p_id=P1590;gene_id=YDR235W;tss_id=TSS1547;nbOverlaps=0;ID=YDR235W;Name=PRP42
XVI	S-MART	transcript	682941	684353	.	-	.	seqedit=false;p_id=P6141;gene_id=YPR068C;tss_id=TSS3937;nbOverlaps=0;ID=YPR068C;Name=HOS1
IV	S-MART	transcript	935236	935892	.	-	.	seqedit=false;p_id=P4305;gene_id=YDR236C;tss_id=TSS6694;nbOverlaps=0;ID=YDR236C;Name=FMN1
IV	S-MART	transcript	936615	937493	.	+	.	seqedit=false;p_id=P1572;gene_id=YDR237W;tss_id=TSS395;nbOverlaps=0;ID=YDR237W;Name=MRPL7
IV	S-MART	transcript	937895	940816	.	-	.	seqedit=false;p_id=P4473;gene_id=YDR238C;tss_id=TSS3250;nbOverlaps=0;ID=YDR238C;Name=SEC26
IV	S-MART	transcript	943674	945152	.	-	.	seqedit=false;p_id=P5103;gene_id=YDR240C;tss_id=TSS495;nbOverlaps=0;ID=YDR240C;Name=SNU56
VII	S-MART	transcript	33098	35212	.	+	.	seqedit=false;p_id=P5665;gene_id=YGL249W;tss_id=TSS5149;nbOverlaps=0;ID=YGL249W;Name=ZIP2
IV	S-MART	transcript	941057	943420	.	-	.	seqedit=false;p_id=P3815;gene_id=YDR239C;tss_id=TSS2817;nbOverlaps=0;ID=YDR239C;Name=YDR239C
IV	S-MART	transcript	945151	945438	.	+	.	seqedit=false;p_id=P5084;gene_id=YDR241W;tss_id=TSS1422;nbOverlaps=0;ID=YDR241W;Name=BUD26
XVI	S-MART	transcript	684556	685437	.	-	.	seqedit=false;p_id=P5195;gene_id=YPR069C;tss_id=TSS711;nbOverlaps=0;ID=YPR069C;Name=SPE3
IV	S-MART	transcript	946807	948456	.	+	.	seqedit=false;p_id=P188;gene_id=YDR242W;tss_id=TSS5197;nbOverlaps=0;ID=YDR242W;Name=AMD2
IV	S-MART	transcript	948518	950284	.	-	.	seqedit=false;p_id=P1562;gene_id=YDR243C;tss_id=TSS4950;nbOverlaps=0;ID=YDR243C;Name=PRP28
IV	S-MART	transcript	950563	952401	.	+	.	seqedit=false;p_id=P931;gene_id=YDR244W;tss_id=TSS5320;nbOverlaps=0;ID=YDR244W;Name=PEX5
IV	S-MART	transcript	952800	953981	.	+	.	seqedit=false;p_id=P6499;gene_id=YDR245W;tss_id=TSS295;nbOverlaps=0;ID=YDR245W;Name=MNN10
VII	S-MART	transcript	31910	32635	.	+	.	seqedit=false;p_id=P1391;gene_id=YGL250W;tss_id=TSS1642;nbOverlaps=0;ID=YGL250W;Name=RMR1
IV	S-MART	transcript	954288	954947	.	+	.	seqedit=false;p_id=P6511;gene_id=YDR246W;tss_id=TSS1231;nbOverlaps=0;ID=YDR246W;Name=TRS23
IV	S-MART	transcript	955133	955333	.	+	.	seqedit=false;p_id=P2182;gene_id=YDR246W-A;tss_id=TSS6537;nbOverlaps=0;ID=YDR246W-A;Name=YDR246W-A
XVI	S-MART	transcript	685898	687598	.	+	.	seqedit=false;p_id=P122;gene_id=YPR070W;tss_id=TSS761;nbOverlaps=0;ID=YPR070W;Name=MED1
IV	S-MART	transcript	956013	957398	.	+	.	seqedit=false;p_id=P652;gene_id=YDR247W;tss_id=TSS5111;nbOverlaps=0;ID=YDR247W;Name=VHS1
IV	S-MART	transcript	960614	963106	.	+	.	seqedit=false;p_id=P3607;gene_id=YDR251W;tss_id=TSS4668;nbOverlaps=0;ID=YDR251W;Name=PAM1
IV	S-MART	transcript	957758	958339	.	-	.	seqedit=false;p_id=P2745;gene_id=YDR248C;tss_id=TSS1647;nbOverlaps=0;ID=YDR248C;Name=YDR248C
IV	S-MART	transcript	958681	959802	.	-	.	seqedit=false;p_id=P3890;gene_id=YDR249C;tss_id=TSS5870;nbOverlaps=0;ID=YDR249C;Name=YDR249C
VII	S-MART	transcript	27921	31636	.	-	.	seqedit=false;p_id=P1929;gene_id=YGL251C;tss_id=TSS5909;nbOverlaps=0;ID=YGL251C;Name=HFM1
VII	S-MART	exon	27921	31426	.	-	.	ID=YGL251C-exon1;Name=HFM1-exon1;Parent=YGL251C
VII	S-MART	exon	31579	31636	.	-	.	ID=YGL251C-exon2;Name=HFM1-exon2;Parent=YGL251C
IV	S-MART	transcript	960086	960361	.	-	.	seqedit=false;p_id=P2485;gene_id=YDR250C;tss_id=TSS2446;nbOverlaps=0;ID=YDR250C;Name=YDR250C
IV	S-MART	transcript	963412	963861	.	+	.	seqedit=false;p_id=P1943;gene_id=YDR252W;tss_id=TSS1674;nbOverlaps=0;ID=YDR252W;Name=BTT1
XVI	S-MART	transcript	690107	691789	.	+	.	seqedit=false;p_id=P2295;gene_id=YPR072W;tss_id=TSS6849;nbOverlaps=0;ID=YPR072W;Name=NOT5
IV	S-MART	transcript	963990	964565	.	-	.	seqedit=false;p_id=P671;gene_id=YDR253C;tss_id=TSS46;nbOverlaps=0;ID=YDR253C;Name=MET32
IV	S-MART	transcript	965113	966489	.	+	.	seqedit=false;p_id=P3711;gene_id=YDR254W;tss_id=TSS1117;nbOverlaps=0;ID=YDR254W;Name=CHL4
IV	S-MART	transcript	966557	967822	.	-	.	seqedit=false;p_id=P3112;gene_id=YDR255C;tss_id=TSS2366;nbOverlaps=0;ID=YDR255C;Name=RMD5
IV	S-MART	transcript	968133	969680	.	-	.	seqedit=false;p_id=P2626;gene_id=YDR256C;tss_id=TSS3081;nbOverlaps=0;ID=YDR256C;Name=CTA1
IV	S-MART	transcript	969990	971474	.	-	.	seqedit=false;p_id=P283;gene_id=YDR257C;tss_id=TSS6050;nbOverlaps=0;ID=YDR257C;Name=RKM4
IV	S-MART	transcript	971808	974243	.	-	.	seqedit=false;p_id=P2127;gene_id=YDR258C;tss_id=TSS6632;nbOverlaps=0;ID=YDR258C;Name=HSP78
XVI	S-MART	transcript	688172	688807	.	+	.	seqedit=false;p_id=P3262;gene_id=YPR071W;tss_id=TSS5544;nbOverlaps=0;ID=YPR071W;Name=YPR071W
IV	S-MART	transcript	974631	975782	.	-	.	seqedit=false;p_id=P3592;gene_id=YDR259C;tss_id=TSS4130;nbOverlaps=0;ID=YDR259C;Name=YAP6
IV	S-MART	transcript	976717	977229	.	-	.	seqedit=false;p_id=P2142;gene_id=YDR260C;tss_id=TSS6327;nbOverlaps=0;ID=YDR260C;Name=SWM1
IV	S-MART	transcript	977521	979209	.	-	.	seqedit=false;p_id=P3004;gene_id=YDR261C;tss_id=TSS5421;nbOverlaps=0;ID=YDR261C;Name=EXG2
IV	S-MART	transcript	991027	992349	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P815;gene_id=YDR261C-C;tss_id=TSS1342;nbOverlaps=31;ID=YDR261C-C;Name=YDR261C-C
IV	S-MART	transcript	987534	992349	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P4422;gene_id=YDR261C-D;tss_id=TSS1342;nbOverlaps=39;ID=YDR261C-D;Name=YDR261C-D
IV	S-MART	exon	987534	991043	.	-	.	ID=YDR261C-D-exon1;Name=YDR261C-D-exon1;Parent=YDR261C-D
IV	S-MART	exon	991045	992349	.	-	.	ID=YDR261C-D-exon2;Name=YDR261C-D-exon2;Parent=YDR261C-D
XVI	S-MART	transcript	691933	692418	.	-	.	seqedit=false;p_id=P419;gene_id=YPR073C;tss_id=TSS6376;nbOverlaps=0;ID=YPR073C;Name=LTP1
IV	S-MART	transcript	981462	982778	.	+	.	seqedit=false;p_id=P4876;gene_id=YDR261W-A;tss_id=TSS3484;nbOverlaps=0;ID=YDR261W-A;Name=YDR261W-A
IV	S-MART	transcript	981462	986775	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:1357:5681#0--HWUSI-EAS1656_0009_FC:3:93:8173:17209#0--HWUSI-EAS1656_0009_;p_id=P5702;gene_id=YDR261W-B;tss_id=TSS3484;nbOverlaps=71;ID=YDR261W-B;Name=YDR261W-B
IV	S-MART	exon	981462	982754	.	+	.	ID=YDR261W-B-exon1;Name=YDR261W-B-exon1;Parent=YDR261W-B
IV	S-MART	exon	982756	986775	.	+	.	ID=YDR261W-B-exon2;Name=YDR261W-B-exon2;Parent=YDR261W-B
VII	S-MART	transcript	25718	27484	.	-	.	seqedit=false;p_id=P2281;gene_id=YGL252C;tss_id=TSS5445;nbOverlaps=0;ID=YGL252C;Name=RTG2
IV	S-MART	transcript	994242	995534	.	-	.	seqedit=false;p_id=P5505;gene_id=YDR263C;tss_id=TSS805;nbOverlaps=0;ID=YDR263C;Name=DIN7
XVI	S-MART	transcript	692796	694838	.	-	.	seqedit=false;p_id=P2754;gene_id=YPR074C;tss_id=TSS6143;nbOverlaps=0;ID=YPR074C;Name=TKL1
IV	S-MART	transcript	993134	993952	.	+	.	seqedit=false;p_id=P2037;gene_id=YDR262W;tss_id=TSS2045;nbOverlaps=0;ID=YDR262W;Name=YDR262W
IV	S-MART	transcript	996029	998323	.	-	.	seqedit=false;p_id=P5513;gene_id=YDR264C;tss_id=TSS5196;nbOverlaps=0;ID=YDR264C;Name=AKR1
IV	S-MART	transcript	998864	999877	.	+	.	seqedit=false;p_id=P5860;gene_id=YDR265W;tss_id=TSS2455;nbOverlaps=0;ID=YDR265W;Name=PEX10
IV	S-MART	transcript	1002510	1003502	.	-	.	seqedit=false;p_id=P3182;gene_id=YDR267C;tss_id=TSS806;nbOverlaps=0;ID=YDR267C;Name=CIA1
VII	S-MART	transcript	23935	25395	.	+	.	seqedit=false;p_id=P6575;gene_id=YGL253W;tss_id=TSS388;nbOverlaps=0;ID=YGL253W;Name=HXK2
IV	S-MART	transcript	1000104	1002023	.	-	.	seqedit=false;p_id=P4144;gene_id=YDR266C;tss_id=TSS2721;nbOverlaps=0;ID=YDR266C;Name=YDR266C
IV	S-MART	transcript	1004004	1005143	.	+	.	seqedit=false;p_id=P1949;gene_id=YDR268W;tss_id=TSS2420;nbOverlaps=0;ID=YDR268W;Name=MSW1
XVI	S-MART	transcript	695018	695188	.	+	.	seqedit=false;p_id=P4278;gene_id=YPR074W-A;tss_id=TSS4437;nbOverlaps=0;ID=YPR074W-A;Name=YPR074W-A
IV	S-MART	transcript	1005675	1008689	.	+	.	seqedit=false;p_id=P1694;gene_id=YDR270W;tss_id=TSS312;nbOverlaps=0;ID=YDR270W;Name=CCC2
IV	S-MART	transcript	1005665	1005988	.	-	.	seqedit=false;p_id=P3570;gene_id=YDR269C;tss_id=TSS6962;nbOverlaps=0;ID=YDR269C;Name=YDR269C
IV	S-MART	transcript	1009010	1009834	.	+	.	seqedit=false;p_id=P4362;gene_id=YDR272W;tss_id=TSS2177;nbOverlaps=0;ID=YDR272W;Name=GLO2
XVI	S-MART	transcript	350194	352275	.	-	.	seqedit=false;p_id=P4110;gene_id=YPL106C;tss_id=TSS2365;nbOverlaps=0;ID=YPL106C;Name=SSE1
IV	S-MART	transcript	1008395	1008766	.	-	.	seqedit=false;p_id=P3315;gene_id=YDR271C;tss_id=TSS6519;nbOverlaps=0;ID=YDR271C;Name=YDR271C
IV	S-MART	transcript	1010176	1011273	.	+	.	seqedit=false;p_id=P651;gene_id=YDR273W;tss_id=TSS3251;nbOverlaps=0;ID=YDR273W;Name=DON1
IV	S-MART	transcript	1012252	1012959	.	+	.	seqedit=false;p_id=P5108;gene_id=YDR275W;tss_id=TSS5337;nbOverlaps=0;ID=YDR275W;Name=BSC2
XVI	S-MART	transcript	695737	696819	.	-	.	seqedit=false;p_id=P150;gene_id=YPR075C;tss_id=TSS1084;nbOverlaps=0;ID=YPR075C;Name=OPY2
IV	S-MART	transcript	1011589	1011960	.	-	.	seqedit=false;p_id=P3268;gene_id=YDR274C;tss_id=TSS563;nbOverlaps=0;ID=YDR274C;Name=YDR274C
IV	S-MART	transcript	1013476	1013643	.	-	.	seqedit=false;p_id=P1822;gene_id=YDR276C;tss_id=TSS1714;nbOverlaps=0;ID=YDR276C;Name=PMP3
IV	S-MART	transcript	1014401	1015702	.	-	.	seqedit=false;p_id=P76;gene_id=YDR277C;tss_id=TSS4737;nbOverlaps=0;ID=YDR277C;Name=MTH1
V	S-MART	transcript	64709	65167	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:57:5462:20972#0--HWUSI-EAS1656_0009_FC:3:118:12495:1761#0--HWUSI-EAS1656_000;p_id=P6239;gene_id=YEL048C;tss_id=TSS3781;nbOverlaps=57;ID=YEL048C;Name=TCA17
XV	S-MART	transcript	464771	466543	.	+	.	seqedit=false;p_id=P4354;gene_id=YOR073W;tss_id=TSS617;nbOverlaps=0;ID=YOR073W;Name=SGO1
XVI	S-MART	transcript	698869	700014	.	+	.	seqedit=false;p_id=P68;gene_id=YPR079W;tss_id=TSS6203;nbOverlaps=0;ID=YPR079W;Name=MRL1
XV	S-MART	transcript	467390	467623	.	+	.	seqedit=false;p_id=P5;gene_id=YOR073W-A;tss_id=TSS2758;nbOverlaps=0;ID=YOR073W-A;Name=YOR073W-A
XV	S-MART	transcript	466675	467589	.	-	.	seqedit=false;p_id=P1516;gene_id=YOR074C;tss_id=TSS2272;nbOverlaps=0;ID=YOR074C;Name=CDC21
XV	S-MART	transcript	468212	469252	.	+	.	seqedit=false;p_id=P1055;gene_id=YOR075W;tss_id=TSS3146;nbOverlaps=0;ID=YOR075W;Name=UFE1
XV	S-MART	transcript	469377	471620	.	-	.	seqedit=false;p_id=P2167;gene_id=YOR076C;tss_id=TSS1355;nbOverlaps=0;ID=YOR076C;Name=SKI7
VII	S-MART	transcript	15159	16307	.	+	.	seqedit=false;p_id=P3772;gene_id=YGL256W;tss_id=TSS5222;nbOverlaps=0;ID=YGL256W;Name=ADH4
XV	S-MART	transcript	471899	472597	.	+	.	seqedit=false;p_id=P5615;gene_id=YOR077W;tss_id=TSS1164;nbOverlaps=0;ID=YOR077W;Name=RTS2
IV	S-MART	transcript	1434924	1435874	.	+	.	seqedit=false;p_id=P2900;gene_id=YDR492W;tss_id=TSS748;nbOverlaps=0;ID=YDR492W;Name=IZH1
XV	S-MART	transcript	472725	473369	.	+	.	seqedit=false;p_id=P5418;gene_id=YOR078W;tss_id=TSS1985;nbOverlaps=0;ID=YOR078W;Name=BUD21
XVI	S-MART	transcript	696476	696850	.	+	.	seqedit=false;p_id=P4903;gene_id=YPR076W;tss_id=TSS1172;nbOverlaps=0;ID=YPR076W;Name=YPR076W
XV	S-MART	transcript	473475	474416	.	-	.	seqedit=false;p_id=P2599;gene_id=YOR079C;tss_id=TSS6709;nbOverlaps=0;ID=YOR079C;Name=ATX2
XV	S-MART	transcript	474594	476792	.	+	.	seqedit=false;p_id=P3436;gene_id=YOR080W;tss_id=TSS1534;nbOverlaps=0;ID=YOR080W;Name=DIA2
XIII	S-MART	transcript	565999	568182	.	-	.	seqedit=false;p_id=P108;gene_id=YMR154C;tss_id=TSS3903;nbOverlaps=0;ID=YMR154C;Name=RIM13
XV	S-MART	transcript	476939	479188	.	-	.	seqedit=false;p_id=P4449;gene_id=YOR081C;tss_id=TSS6771;nbOverlaps=0;ID=YOR081C;Name=TGL5
XV	S-MART	transcript	479533	480420	.	+	.	seqedit=false;p_id=P6066;gene_id=YOR083W;tss_id=TSS3027;nbOverlaps=0;ID=YOR083W;Name=WHI5
VII	S-MART	transcript	12481	14157	.	-	.	seqedit=false;p_id=P2384;gene_id=YGL257C;tss_id=TSS3580;nbOverlaps=0;ID=YGL257C;Name=MNT2
XV	S-MART	transcript	479296	479637	.	-	.	seqedit=false;p_id=P5409;gene_id=YOR082C;tss_id=TSS6096;nbOverlaps=0;ID=YOR082C;Name=YOR082C
XV	S-MART	transcript	480587	481750	.	+	.	seqedit=false;p_id=P5577;gene_id=YOR084W;tss_id=TSS67;nbOverlaps=0;ID=YOR084W;Name=LPX1
XV	S-MART	transcript	482033	483085	.	+	.	seqedit=false;p_id=P2024;gene_id=YOR085W;tss_id=TSS4018;nbOverlaps=0;ID=YOR085W;Name=OST3
XV	S-MART	transcript	483219	486779	.	-	.	seqedit=false;p_id=P4445;gene_id=YOR086C;tss_id=TSS7000;nbOverlaps=0;ID=YOR086C;Name=TCB1
XV	S-MART	transcript	487707	489734	.	+	.	seqedit=false;p_id=P6208;gene_id=YOR087W;tss_id=TSS2932;nbOverlaps=0;ID=YOR087W;Name=YVC1
XV	S-MART	transcript	490196	490828	.	-	.	seqedit=false;p_id=P5520;gene_id=YOR089C;tss_id=TSS84;nbOverlaps=0;ID=YOR089C;Name=VPS21
VII	S-MART	transcript	11110	11730	.	+	.	seqedit=false;p_id=P727;gene_id=YGL258W;tss_id=TSS5599;nbOverlaps=0;ID=YGL258W;Name=VEL1
XV	S-MART	transcript	491123	492841	.	-	.	seqedit=false;p_id=P6179;gene_id=YOR090C;tss_id=TSS4800;nbOverlaps=0;ID=YOR090C;Name=PTC5
XV	S-MART	transcript	493433	494470	.	+	.	seqedit=false;p_id=P4590;gene_id=YOR091W;tss_id=TSS7027;nbOverlaps=0;ID=YOR091W;Name=TMA46
XV	S-MART	transcript	495127	496968	.	+	.	seqedit=false;p_id=P4688;gene_id=YOR092W;tss_id=TSS4066;nbOverlaps=0;ID=YOR092W;Name=ECM3
XV	S-MART	transcript	502795	503346	.	+	.	seqedit=false;p_id=P5726;gene_id=YOR094W;tss_id=TSS582;nbOverlaps=0;ID=YOR094W;Name=ARF3
XV	S-MART	transcript	497506	502452	.	-	.	seqedit=false;p_id=P2348;gene_id=YOR093C;tss_id=TSS273;nbOverlaps=0;ID=YOR093C;Name=YOR093C
XVI	S-MART	transcript	341068	344739	.	-	.	seqedit=false;p_id=P3415;gene_id=YPL110C;tss_id=TSS4885;nbOverlaps=0;ID=YPL110C;Name=GDE1
XV	S-MART	transcript	503552	504328	.	-	.	seqedit=false;p_id=P1099;gene_id=YOR095C;tss_id=TSS396;nbOverlaps=0;ID=YOR095C;Name=RKI1
VII	S-MART	transcript	9162	9395	.	+	.	seqedit=false;p_id=P4355;gene_id=YGL258W-A;tss_id=TSS2352;nbOverlaps=0;ID=YGL258W-A;Name=YGL258W-A
XV	S-MART	transcript	505794	506767	.	+	.	seqedit=false;p_id=P2806;gene_id=YOR096W;tss_id=TSS5958;nbOverlaps=0;ID=YOR096W;Name=RPS7A
XV	S-MART	exon	505794	505937	.	+	.	ID=YOR096W-exon1;Name=RPS7A-exon1;Parent=YOR096W
XV	S-MART	exon	506339	506767	.	+	.	ID=YOR096W-exon2;Name=RPS7A-exon2;Parent=YOR096W
XVI	S-MART	transcript	700594	701970	.	+	.	seqedit=false;p_id=P763;gene_id=YPR080W;tss_id=TSS6938;nbOverlaps=0;ID=YPR080W;Name=TEF1
XV	S-MART	transcript	507948	511178	.	-	.	seqedit=false;p_id=P1121;gene_id=YOR098C;tss_id=TSS1105;nbOverlaps=0;ID=YOR098C;Name=NUP1
XV	S-MART	transcript	506978	507505	.	-	.	seqedit=false;p_id=P970;gene_id=YOR097C;tss_id=TSS3211;nbOverlaps=0;ID=YOR097C;Name=YOR097C
XV	S-MART	transcript	511825	513006	.	+	.	seqedit=false;p_id=P4009;gene_id=YOR099W;tss_id=TSS4569;nbOverlaps=0;ID=YOR099W;Name=KTR1
VII	S-MART	transcript	8470	8967	.	+	.	seqedit=false;p_id=P3402;gene_id=YGL259W;tss_id=TSS1791;nbOverlaps=0;ID=YGL259W;Name=YPS5
XV	S-MART	transcript	513295	514278	.	-	.	seqedit=false;p_id=P226;gene_id=YOR100C;tss_id=TSS235;nbOverlaps=0;ID=YOR100C;Name=CRC1
XV	S-MART	transcript	515244	516173	.	+	.	seqedit=false;p_id=P1356;gene_id=YOR101W;tss_id=TSS1077;nbOverlaps=0;ID=YOR101W;Name=RAS1
XVI	S-MART	transcript	702114	703970	.	-	.	seqedit=false;p_id=P6285;gene_id=YPR081C;tss_id=TSS2429;nbOverlaps=0;ID=YPR081C;Name=GRS2
XV	S-MART	transcript	516449	516841	.	-	.	seqedit=false;p_id=P2016;gene_id=YOR103C;tss_id=TSS3853;nbOverlaps=0;ID=YOR103C;Name=OST2
XV	S-MART	transcript	516423	516773	.	+	.	seqedit=false;p_id=P6416;gene_id=YOR102W;tss_id=TSS1708;nbOverlaps=0;ID=YOR102W;Name=YOR102W
XV	S-MART	transcript	517642	518490	.	+	.	seqedit=false;p_id=P1255;gene_id=YOR104W;tss_id=TSS4494;nbOverlaps=0;ID=YOR104W;Name=PIN2
XV	S-MART	transcript	519121	519972	.	+	.	seqedit=false;p_id=P3627;gene_id=YOR106W;tss_id=TSS6542;nbOverlaps=0;ID=YOR106W;Name=VAM3
VII	S-MART	transcript	6290	6652	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:14589:7302#0--HWUSI-EAS1656_0009_FC:3:9:6232:2282#0;p_id=P2885;gene_id=YGL261C;tss_id=TSS4621;nbOverlaps=2;ID=YGL261C;Name=PAU11
XV	S-MART	transcript	518195	518521	.	+	.	seqedit=false;p_id=P2624;gene_id=YOR105W;tss_id=TSS1315;nbOverlaps=0;ID=YOR105W;Name=YOR105W
XV	S-MART	transcript	521353	522282	.	+	.	seqedit=false;p_id=P3956;gene_id=YOR107W;tss_id=TSS3652;nbOverlaps=0;ID=YOR107W;Name=RGS2
XVI	S-MART	transcript	704225	704656	.	-	.	seqedit=false;p_id=P5671;gene_id=YPR082C;tss_id=TSS3950;nbOverlaps=0;ID=YPR082C;Name=DIB1
XV	S-MART	transcript	524605	524814	.	-	.	seqedit=false;p_id=P573;gene_id=YOR108C-A;tss_id=TSS1370;nbOverlaps=0;ID=YOR108C-A;Name=YOR108C-A
XV	S-MART	transcript	523027	524841	.	+	.	seqedit=false;p_id=P4083;gene_id=YOR108W;tss_id=TSS5074;nbOverlaps=0;ID=YOR108W;Name=LEU9
XV	S-MART	transcript	525278	528601	.	+	.	seqedit=false;p_id=P1320;gene_id=YOR109W;tss_id=TSS124;nbOverlaps=0;ID=YOR109W;Name=INP53
XV	S-MART	transcript	528941	530248	.	+	.	seqedit=false;p_id=P1421;gene_id=YOR110W;tss_id=TSS1189;nbOverlaps=0;ID=YOR110W;Name=TFC7
VII	S-MART	transcript	6860	7090	.	+	.	seqedit=false;p_id=P1657;gene_id=YGL260W;tss_id=TSS4672;nbOverlaps=0;ID=YGL260W;Name=YGL260W
XV	S-MART	transcript	531508	533793	.	+	.	seqedit=false;p_id=P1448;gene_id=YOR112W;tss_id=TSS4200;nbOverlaps=0;ID=YOR112W;Name=CEX1
XV	S-MART	transcript	530429	531127	.	+	.	seqedit=false;p_id=P4273;gene_id=YOR111W;tss_id=TSS3568;nbOverlaps=0;ID=YOR111W;Name=YOR111W
XVI	S-MART	transcript	704854	706593	.	+	.	seqedit=false;p_id=P146;gene_id=YPR083W;tss_id=TSS6196;nbOverlaps=0;ID=YPR083W;Name=MDM36
XV	S-MART	transcript	534075	536819	.	+	.	seqedit=false;p_id=P3043;gene_id=YOR113W;tss_id=TSS6068;nbOverlaps=0;ID=YOR113W;Name=AZF1
XV	S-MART	transcript	538659	539465	.	-	.	seqedit=false;p_id=P4603;gene_id=YOR115C;tss_id=TSS465;nbOverlaps=0;ID=YOR115C;Name=TRS33
XV	S-MART	transcript	537570	538454	.	+	.	seqedit=false;p_id=P5864;gene_id=YOR114W;tss_id=TSS1912;nbOverlaps=0;ID=YOR114W;Name=YOR114W
XV	S-MART	transcript	539763	544145	.	-	.	seqedit=false;p_id=P1063;gene_id=YOR116C;tss_id=TSS4139;nbOverlaps=0;ID=YOR116C;Name=RPO31
VII	S-MART	transcript	2790	3932	.	+	.	seqedit=false;p_id=P820;gene_id=YGL263W;tss_id=TSS358;nbOverlaps=0;ID=YGL263W;Name=COS12
XV	S-MART	transcript	545029	546333	.	+	.	seqedit=false;p_id=P3929;gene_id=YOR117W;tss_id=TSS4100;nbOverlaps=0;ID=YOR117W;Name=RPT5
XV	S-MART	transcript	546857	548560	.	+	.	seqedit=false;p_id=P5962;gene_id=YOR118W;tss_id=TSS4688;nbOverlaps=0;ID=YOR118W;Name=RTC5
XVI	S-MART	transcript	708497	709828	.	-	.	seqedit=false;p_id=P5995;gene_id=YPR085C;tss_id=TSS1350;nbOverlaps=0;ID=YPR085C;Name=ASA1
XV	S-MART	transcript	548792	550246	.	-	.	seqedit=false;p_id=P4793;gene_id=YOR119C;tss_id=TSS6357;nbOverlaps=0;ID=YOR119C;Name=RIO1
XV	S-MART	transcript	551114	552052	.	+	.	seqedit=false;p_id=P1558;gene_id=YOR120W;tss_id=TSS3838;nbOverlaps=0;ID=YOR120W;Name=GCY1
XV	S-MART	transcript	552298	552887	.	-	.	seqedit=false;p_id=P5220;gene_id=YOR122C;tss_id=TSS6551;nbOverlaps=0;ID=YOR122C;Name=PFY1
XV	S-MART	exon	552298	552665	.	-	.	ID=YOR122C-exon1;Name=PFY1-exon1;Parent=YOR122C
XV	S-MART	exon	552875	552887	.	-	.	ID=YOR122C-exon2;Name=PFY1-exon2;Parent=YOR122C
XVI	S-MART	transcript	349119	349865	.	+	.	seqedit=false;p_id=P4093;gene_id=YPL107W;tss_id=TSS1569;nbOverlaps=0;ID=YPL107W;Name=YPL107W
XV	S-MART	transcript	551798	552103	.	-	.	seqedit=false;p_id=P3209;gene_id=YOR121C;tss_id=TSS2133;nbOverlaps=0;ID=YOR121C;Name=YOR121C
VII	S-MART	transcript	5312	5839	.	+	.	seqedit=false;p_id=P5746;gene_id=YGL262W;tss_id=TSS5696;nbOverlaps=0;ID=YGL262W;Name=YGL262W
XV	S-MART	transcript	553176	554570	.	-	.	seqedit=false;p_id=P2117;gene_id=YOR123C;tss_id=TSS6978;nbOverlaps=0;ID=YOR123C;Name=LEO1
XV	S-MART	transcript	554824	558642	.	-	.	seqedit=false;p_id=P2564;gene_id=YOR124C;tss_id=TSS5725;nbOverlaps=0;ID=YOR124C;Name=UBP2
XV	S-MART	transcript	559030	559731	.	-	.	seqedit=false;p_id=P1016;gene_id=YOR125C;tss_id=TSS6269;nbOverlaps=0;ID=YOR125C;Name=CAT5
XV	S-MART	transcript	559961	560677	.	-	.	seqedit=false;p_id=P253;gene_id=YOR126C;tss_id=TSS4533;nbOverlaps=0;ID=YOR126C;Name=IAH1
X	S-MART	transcript	306132	307856	.	+	.	seqedit=false;p_id=P2831;gene_id=YJL071W;tss_id=TSS6914;nbOverlaps=0;ID=YJL071W;Name=ARG2
XV	S-MART	transcript	561170	564193	.	+	.	seqedit=false;p_id=P245;gene_id=YOR127W;tss_id=TSS6943;nbOverlaps=0;ID=YOR127W;Name=RGA1
XVI	S-MART	transcript	412254	415362	.	+	.	seqedit=false;p_id=P6061;gene_id=YPL075W;tss_id=TSS1907;nbOverlaps=0;ID=YPL075W;Name=GCR1
XVI	S-MART	exon	412254	412261	.	+	.	ID=YPL075W-exon1;Name=GCR1-exon1;Parent=YPL075W
XVI	S-MART	exon	413013	415362	.	+	.	ID=YPL075W-exon2;Name=GCR1-exon2;Parent=YPL075W
XV	S-MART	transcript	564476	566191	.	-	.	seqedit=false;p_id=P6028;gene_id=YOR128C;tss_id=TSS3508;nbOverlaps=0;ID=YOR128C;Name=ADE2
XV	S-MART	transcript	566877	569558	.	-	.	seqedit=false;p_id=P4014;gene_id=YOR129C;tss_id=TSS5718;nbOverlaps=0;ID=YOR129C;Name=AFI1
VI	S-MART	transcript	99231	99599	.	-	.	seqedit=false;p_id=P2677;gene_id=YFL020C;tss_id=TSS3998;nbOverlaps=0;ID=YFL020C;Name=PAU5
VIII	S-MART	transcript	466990	467061	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:7897:9853#0--HWUSI-EAS1656_0009_FC:3:18:18923:7183#0--HWUSI-EAS1656_0009_;gene_id=tT(UGU)H;tss_id=TSS783;nbOverlaps=22;ID=tT(UGU)H;Name=tT(UGU)H
IX	S-MART	transcript	205635	206507	.	+	.	seqedit=false;p_id=P3127;gene_id=YIL082W;tss_id=TSS169;nbOverlaps=0;ID=YIL082W;Name=YIL082W
Mito	S-MART	transcript	78089	78162	.	-	.	seqedit=false;gene_id=tT(XXX)Q2;tss_id=TSS548;nbOverlaps=0;ID=tT(XXX)Q2;Name=tT(XXX)Q2
XVI	S-MART	transcript	711354	711674	.	+	.	seqedit=false;p_id=P3047;gene_id=YPR087W;tss_id=TSS4520;nbOverlaps=0;ID=YPR087W;Name=VPS69
V	S-MART	transcript	438700	438773	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:7285:14778#0--HWUSI-EAS1656_0009_FC:3:5:2998:19501#0--HWUSI-EAS1656_0009_;gene_id=tV(AAC)E1;tss_id=TSS362;nbOverlaps=139;ID=tV(AAC)E1;Name=tV(AAC)E1
IX	S-MART	transcript	203556	204653	.	-	.	seqedit=false;p_id=P5951;gene_id=YIL083C;tss_id=TSS2057;nbOverlaps=0;ID=YIL083C;Name=CAB2
IX	S-MART	transcript	202276	203259	.	-	.	seqedit=false;p_id=P5364;gene_id=YIL084C;tss_id=TSS417;nbOverlaps=0;ID=YIL084C;Name=SDS3
IX	S-MART	transcript	200490	202043	.	-	.	seqedit=false;p_id=P6090;gene_id=YIL085C;tss_id=TSS1218;nbOverlaps=0;ID=YIL085C;Name=KTR7
IX	S-MART	transcript	199646	200119	.	-	.	seqedit=false;p_id=P5631;gene_id=YIL087C;tss_id=TSS6496;nbOverlaps=0;ID=YIL087C;Name=AIM19
IX	S-MART	transcript	200153	200461	.	-	.	seqedit=false;p_id=P147;gene_id=YIL086C;tss_id=TSS648;nbOverlaps=0;ID=YIL086C;Name=YIL086C
XVI	S-MART	transcript	711403	713028	.	-	.	seqedit=false;p_id=P337;gene_id=YPR088C;tss_id=TSS2653;nbOverlaps=0;ID=YPR088C;Name=SRP54
IX	S-MART	transcript	197931	199403	.	-	.	seqedit=false;p_id=P3120;gene_id=YIL088C;tss_id=TSS3458;nbOverlaps=0;ID=YIL088C;Name=AVT7
IX	S-MART	transcript	193595	195070	.	+	.	seqedit=false;p_id=P1627;gene_id=YIL090W;tss_id=TSS6285;nbOverlaps=0;ID=YIL090W;Name=ICE2
IX	S-MART	transcript	195599	196216	.	+	.	seqedit=false;p_id=P4143;gene_id=YIL089W;tss_id=TSS2551;nbOverlaps=0;ID=YIL089W;Name=YIL089W
III	S-MART	transcript	24768	26906	.	+	.	seqedit=false;p_id=P5327;gene_id=YCL057W;tss_id=TSS6173;nbOverlaps=0;ID=YCL057W;Name=PRD1
IX	S-MART	transcript	191030	193195	.	-	.	seqedit=false;p_id=P2104;gene_id=YIL091C;tss_id=TSS4387;nbOverlaps=0;ID=YIL091C;Name=UTP25
IX	S-MART	transcript	187990	188784	.	-	.	seqedit=false;p_id=P4882;gene_id=YIL093C;tss_id=TSS3971;nbOverlaps=0;ID=YIL093C;Name=RSM25
IX	S-MART	transcript	189066	190967	.	+	.	seqedit=false;p_id=P5111;gene_id=YIL092W;tss_id=TSS2122;nbOverlaps=0;ID=YIL092W;Name=YIL092W
XVI	S-MART	transcript	719558	720424	.	-	.	seqedit=false;p_id=P2448;gene_id=YPR093C;tss_id=TSS4912;nbOverlaps=0;ID=YPR093C;Name=ASR1
IX	S-MART	transcript	186517	187632	.	-	.	seqedit=false;p_id=P5694;gene_id=YIL094C;tss_id=TSS6687;nbOverlaps=0;ID=YIL094C;Name=LYS12
IX	S-MART	transcript	183937	186369	.	+	.	seqedit=false;p_id=P5559;gene_id=YIL095W;tss_id=TSS5812;nbOverlaps=0;ID=YIL095W;Name=PRK1
IX	S-MART	transcript	180427	181977	.	+	.	seqedit=false;p_id=P4703;gene_id=YIL097W;tss_id=TSS4080;nbOverlaps=0;ID=YIL097W;Name=FYV10
XVI	S-MART	transcript	348446	348952	.	+	.	seqedit=false;p_id=P3587;gene_id=YPL108W;tss_id=TSS4519;nbOverlaps=0;ID=YPL108W;Name=YPL108W
IX	S-MART	transcript	182117	183127	.	-	.	seqedit=false;p_id=P548;gene_id=YIL096C;tss_id=TSS171;nbOverlaps=0;ID=YIL096C;Name=YIL096C
IX	S-MART	transcript	179772	180239	.	-	.	seqedit=false;p_id=P2483;gene_id=YIL098C;tss_id=TSS1694;nbOverlaps=0;ID=YIL098C;Name=FMC1
IX	S-MART	transcript	178004	179653	.	+	.	seqedit=false;p_id=P4879;gene_id=YIL099W;tss_id=TSS5382;nbOverlaps=0;ID=YIL099W;Name=SGA1
XVI	S-MART	transcript	713275	715941	.	+	.	seqedit=false;p_id=P5466;gene_id=YPR089W;tss_id=TSS4315;nbOverlaps=0;ID=YPR089W;Name=YPR089W
IX	S-MART	transcript	177343	177681	.	-	.	seqedit=false;p_id=P4977;gene_id=YIL100C-A;tss_id=TSS1564;nbOverlaps=0;ID=YIL100C-A;Name=YIL100C-A
IX	S-MART	transcript	175307	177250	.	-	.	seqedit=false;p_id=P372;gene_id=YIL101C;tss_id=TSS2941;nbOverlaps=0;ID=YIL101C;Name=XBP1
IX	S-MART	transcript	177373	177726	.	+	.	seqedit=false;p_id=P313;gene_id=YIL100W;tss_id=TSS2275;nbOverlaps=0;ID=YIL100W;Name=YIL100W
IX	S-MART	transcript	173365	173592	.	-	.	seqedit=false;p_id=P3126;gene_id=YIL102C-A;tss_id=TSS1488;nbOverlaps=0;ID=YIL102C-A;Name=YIL102C-A
IX	S-MART	transcript	174582	174887	.	-	.	seqedit=false;p_id=P4679;gene_id=YIL102C;tss_id=TSS6059;nbOverlaps=0;ID=YIL102C;Name=YIL102C
IX	S-MART	transcript	171751	173028	.	+	.	seqedit=false;p_id=P3975;gene_id=YIL103W;tss_id=TSS3956;nbOverlaps=0;ID=YIL103W;Name=DPH1
XVI	S-MART	transcript	716156	718468	.	-	.	seqedit=false;p_id=P6254;gene_id=YPR091C;tss_id=TSS2990;nbOverlaps=0;ID=YPR091C;Name=YPR091C
IX	S-MART	transcript	169982	171505	.	-	.	seqedit=false;p_id=P4955;gene_id=YIL104C;tss_id=TSS6746;nbOverlaps=0;ID=YIL104C;Name=SHQ1
IX	S-MART	transcript	167581	169641	.	-	.	seqedit=false;p_id=P3645;gene_id=YIL105C;tss_id=TSS5013;nbOverlaps=0;ID=YIL105C;Name=SLM1
IX	S-MART	transcript	167664	167804	.	+	.	seqedit=false;p_id=P2152;gene_id=YIL105W-A;tss_id=TSS6245;nbOverlaps=0;ID=YIL105W-A;Name=YIL105W-A
IX	S-MART	transcript	166415	167444	.	+	.	seqedit=false;p_id=P568;gene_id=YIL106W;tss_id=TSS767;nbOverlaps=0;ID=YIL106W;Name=MOB1
IX	S-MART	exon	166415	166434	.	+	.	ID=YIL106W-exon1;Name=MOB1-exon1;Parent=YIL106W
IX	S-MART	exon	166520	167444	.	+	.	ID=YIL106W-exon2;Name=MOB1-exon2;Parent=YIL106W
VIII	S-MART	transcript	117814	119439	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:76:17001:12403#0--HWUSI-EAS1656_0009_FC:3:81:6035:5357#0--HWUSI-EAS1656_0009;p_id=P2133;gene_id=YHR006W;tss_id=TSS697;nbOverlaps=218;ID=YHR006W;Name=STP2
IV	S-MART	transcript	1436930	1438015	.	+	.	seqedit=false;p_id=P2218;gene_id=YDR494W;tss_id=TSS2140;nbOverlaps=0;ID=YDR494W;Name=RSM28
XI	S-MART	transcript	302918	303023	.	+	.	seqedit=false;gene_id=tW(CCA)K;tss_id=TSS4358;nbOverlaps=0;ID=tW(CCA)K;Name=tW(CCA)K
XI	S-MART	exon	302918	302953	.	+	.	ID=tW(CCA)K-exon1;Name=tW(CCA)K-exon1;Parent=tW(CCA)K
XI	S-MART	exon	302988	303023	.	+	.	ID=tW(CCA)K-exon2;Name=tW(CCA)K-exon2;Parent=tW(CCA)K
IX	S-MART	transcript	163278	165761	.	-	.	seqedit=false;p_id=P578;gene_id=YIL107C;tss_id=TSS6866;nbOverlaps=0;ID=YIL107C;Name=PFK26
IX	S-MART	transcript	157385	160165	.	-	.	seqedit=false;p_id=P1208;gene_id=YIL109C;tss_id=TSS2247;nbOverlaps=0;ID=YIL109C;Name=SEC24
IX	S-MART	transcript	160887	162977	.	+	.	seqedit=false;p_id=P2797;gene_id=YIL108W;tss_id=TSS5300;nbOverlaps=0;ID=YIL108W;Name=YIL108W
IX	S-MART	transcript	156045	157178	.	+	.	seqedit=false;p_id=P503;gene_id=YIL110W;tss_id=TSS6026;nbOverlaps=0;ID=YIL110W;Name=HPM1
IX	S-MART	transcript	155222	155765	.	+	.	seqedit=false;p_id=P207;gene_id=YIL111W;tss_id=TSS1394;nbOverlaps=0;ID=YIL111W;Name=COX5B
IX	S-MART	exon	155222	155222	.	+	.	ID=YIL111W-exon1;Name=COX5B-exon1;Parent=YIL111W
IX	S-MART	exon	155311	155765	.	+	.	ID=YIL111W-exon2;Name=COX5B-exon2;Parent=YIL111W
XVI	S-MART	transcript	56169	56274	.	-	.	seqedit=false;gene_id=tW(CCA)P;tss_id=TSS556;nbOverlaps=0;ID=tW(CCA)P;Name=tW(CCA)P
XVI	S-MART	exon	56169	56204	.	-	.	ID=tW(CCA)P-exon1;Name=tW(CCA)P-exon1;Parent=tW(CCA)P
XVI	S-MART	exon	56239	56274	.	-	.	ID=tW(CCA)P-exon2;Name=tW(CCA)P-exon2;Parent=tW(CCA)P
IX	S-MART	transcript	151595	154846	.	+	.	seqedit=false;p_id=P1897;gene_id=YIL112W;tss_id=TSS153;nbOverlaps=0;ID=YIL112W;Name=HOS4
IX	S-MART	transcript	150559	151188	.	+	.	seqedit=false;p_id=P4456;gene_id=YIL113W;tss_id=TSS4901;nbOverlaps=0;ID=YIL113W;Name=SDP1
IX	S-MART	transcript	149143	149988	.	-	.	seqedit=false;p_id=P5343;gene_id=YIL114C;tss_id=TSS3275;nbOverlaps=0;ID=YIL114C;Name=POR2
IX	S-MART	transcript	144327	148709	.	-	.	seqedit=false;p_id=P685;gene_id=YIL115C;tss_id=TSS2263;nbOverlaps=0;ID=YIL115C;Name=NUP159
IX	S-MART	transcript	144268	144639	.	+	.	seqedit=false;p_id=P5921;gene_id=YIL115W-A;tss_id=TSS1473;nbOverlaps=0;ID=YIL115W-A;Name=YIL115W-A
XVI	S-MART	transcript	721037	724717	.	-	.	seqedit=false;p_id=P6560;gene_id=YPR095C;tss_id=TSS9;nbOverlaps=0;ID=YPR095C;Name=SYT1
IX	S-MART	transcript	142928	144085	.	+	.	seqedit=false;p_id=P5619;gene_id=YIL116W;tss_id=TSS2843;nbOverlaps=0;ID=YIL116W;Name=HIS5
IX	S-MART	transcript	140613	141569	.	-	.	seqedit=false;p_id=P1996;gene_id=YIL117C;tss_id=TSS6454;nbOverlaps=0;ID=YIL117C;Name=PRM5
IX	S-MART	transcript	139752	140447	.	+	.	seqedit=false;p_id=P1351;gene_id=YIL118W;tss_id=TSS940;nbOverlaps=0;ID=YIL118W;Name=RHO3
XVI	S-MART	transcript	345264	347389	.	-	.	seqedit=false;p_id=P5186;gene_id=YPL109C;tss_id=TSS4488;nbOverlaps=0;ID=YPL109C;Name=YPL109C
XVI	S-MART	exon	345264	345444	.	-	.	ID=YPL109C-exon1;Name=YPL109C-exon1;Parent=YPL109C
XVI	S-MART	exon	345597	347389	.	-	.	ID=YPL109C-exon2;Name=YPL109C-exon2;Parent=YPL109C
IX	S-MART	transcript	136654	137877	.	-	.	seqedit=false;p_id=P1529;gene_id=YIL119C;tss_id=TSS6436;nbOverlaps=0;ID=YIL119C;Name=RPI1
IX	S-MART	transcript	134417	136108	.	+	.	seqedit=false;p_id=P542;gene_id=YIL120W;tss_id=TSS6597;nbOverlaps=0;ID=YIL120W;Name=QDR1
IX	S-MART	transcript	132244	133872	.	+	.	seqedit=false;p_id=P2028;gene_id=YIL121W;tss_id=TSS5330;nbOverlaps=0;ID=YIL121W;Name=QDR2
XVI	S-MART	transcript	729791	730213	.	+	.	seqedit=false;p_id=P2992;gene_id=YPR100W;tss_id=TSS1070;nbOverlaps=0;ID=YPR100W;Name=MRPL51
IX	S-MART	transcript	130610	131665	.	+	.	seqedit=false;p_id=P2201;gene_id=YIL122W;tss_id=TSS2741;nbOverlaps=0;ID=YIL122W;Name=POG1
IX	S-MART	transcript	128151	129581	.	+	.	seqedit=false;p_id=P2468;gene_id=YIL123W;tss_id=TSS5608;nbOverlaps=0;ID=YIL123W;Name=SIM1
X	S-MART	transcript	383837	386149	.	+	.	seqedit=false;p_id=P1597;gene_id=YJL033W;tss_id=TSS1301;nbOverlaps=0;ID=YJL033W;Name=HCA4
IX	S-MART	transcript	126204	127097	.	+	.	seqedit=false;p_id=P2547;gene_id=YIL124W;tss_id=TSS3406;nbOverlaps=0;ID=YIL124W;Name=AYR1
IX	S-MART	transcript	122689	125733	.	+	.	seqedit=false;p_id=P2581;gene_id=YIL125W;tss_id=TSS1800;nbOverlaps=0;ID=YIL125W;Name=KGD1
IX	S-MART	transcript	117992	122071	.	+	.	seqedit=false;p_id=P6093;gene_id=YIL126W;tss_id=TSS5070;nbOverlaps=0;ID=YIL126W;Name=STH1
IX	S-MART	transcript	117024	117644	.	-	.	seqedit=false;p_id=P3258;gene_id=YIL127C;tss_id=TSS6090;nbOverlaps=0;ID=YIL127C;Name=RRT14
XVI	S-MART	transcript	724842	725144	.	-	.	seqedit=false;p_id=P2333;gene_id=YPR096C;tss_id=TSS1291;nbOverlaps=0;ID=YPR096C;Name=YPR096C
IX	S-MART	transcript	113806	116904	.	+	.	seqedit=false;p_id=P3;gene_id=YIL128W;tss_id=TSS2155;nbOverlaps=0;ID=YIL128W;Name=MET18
IX	S-MART	transcript	106107	113237	.	-	.	seqedit=false;p_id=P5293;gene_id=YIL129C;tss_id=TSS4935;nbOverlaps=0;ID=YIL129C;Name=TAO3
IX	S-MART	transcript	102782	105676	.	+	.	seqedit=false;p_id=P3924;gene_id=YIL130W;tss_id=TSS72;nbOverlaps=0;ID=YIL130W;Name=ASG1
IX	S-MART	transcript	100781	102235	.	-	.	seqedit=false;p_id=P3625;gene_id=YIL131C;tss_id=TSS1716;nbOverlaps=0;ID=YIL131C;Name=FKH1
IX	S-MART	transcript	99860	100501	.	-	.	seqedit=false;p_id=P98;gene_id=YIL132C;tss_id=TSS5379;nbOverlaps=0;ID=YIL132C;Name=CSM2
IV	S-MART	transcript	1438115	1441150	.	-	.	seqedit=false;p_id=P3320;gene_id=YDR495C;tss_id=TSS1353;nbOverlaps=0;ID=YDR495C;Name=VPS3
IX	S-MART	transcript	98527	99416	.	-	.	seqedit=false;p_id=P5192;gene_id=YIL133C;tss_id=TSS4528;nbOverlaps=0;ID=YIL133C;Name=RPL16A
IX	S-MART	exon	98527	99095	.	-	.	ID=YIL133C-exon1;Name=RPL16A-exon1;Parent=YIL133C
IX	S-MART	exon	99386	99416	.	-	.	ID=YIL133C-exon2;Name=RPL16A-exon2;Parent=YIL133C
XVI	S-MART	transcript	725394	728615	.	+	.	seqedit=false;p_id=P3052;gene_id=YPR097W;tss_id=TSS1060;nbOverlaps=0;ID=YPR097W;Name=YPR097W
XVI	S-MART	transcript	883828	885558	.	+	.	seqedit=false;p_id=P3048;gene_id=YPR171W;tss_id=TSS2868;nbOverlaps=0;ID=YPR171W;Name=BSP1
XVI	S-MART	transcript	728947	729528	.	-	.	seqedit=false;p_id=P1049;gene_id=YPR098C;tss_id=TSS5130;nbOverlaps=0;ID=YPR098C;Name=YPR098C
XVI	S-MART	exon	728947	729385	.	-	.	ID=YPR098C-exon1;Name=YPR098C-exon1;Parent=YPR098C
XVI	S-MART	exon	729482	729528	.	-	.	ID=YPR098C-exon2;Name=YPR098C-exon2;Parent=YPR098C
X	S-MART	transcript	386348	386662	.	+	.	seqedit=false;p_id=P1415;gene_id=YJL032W;tss_id=TSS3766;nbOverlaps=0;ID=YJL032W;Name=YJL032W
XVI	S-MART	transcript	729757	730113	.	-	.	seqedit=false;p_id=P3982;gene_id=YPR099C;tss_id=TSS5612;nbOverlaps=0;ID=YPR099C;Name=YPR099C
VI	S-MART	transcript	95966	97498	.	+	.	seqedit=false;p_id=P3561;gene_id=YFL021W;tss_id=TSS6345;nbOverlaps=0;ID=YFL021W;Name=GAT1
XVI	S-MART	transcript	732349	733212	.	+	.	seqedit=false;p_id=P6366;gene_id=YPR103W;tss_id=TSS2964;nbOverlaps=0;ID=YPR103W;Name=PRE2
XVI	S-MART	transcript	733623	736433	.	-	.	seqedit=false;p_id=P3992;gene_id=YPR104C;tss_id=TSS2214;nbOverlaps=0;ID=YPR104C;Name=FHL1
X	S-MART	transcript	381327	383375	.	+	.	seqedit=false;p_id=P4752;gene_id=YJL034W;tss_id=TSS4652;nbOverlaps=0;ID=YJL034W;Name=KAR2
XVI	S-MART	transcript	736984	739569	.	-	.	seqedit=false;p_id=P3029;gene_id=YPR105C;tss_id=TSS5358;nbOverlaps=0;ID=YPR105C;Name=COG4
VI	S-MART	transcript	93499	95010	.	-	.	seqedit=false;p_id=P2655;gene_id=YFL022C;tss_id=TSS6316;nbOverlaps=0;ID=YFL022C;Name=FRS2
VIII	S-MART	transcript	122889	123590	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:86:10425:1092#0--HWUSI-EAS1656_0009_FC:3:81:9624:18666#0--HWUSI-EAS1656_0009;p_id=P1776;gene_id=YHR008C;tss_id=TSS4339;nbOverlaps=329;ID=YHR008C;Name=SOD2
XVI	S-MART	transcript	740061	741392	.	+	.	seqedit=false;p_id=P5350;gene_id=YPR106W;tss_id=TSS1372;nbOverlaps=0;ID=YPR106W;Name=ISR1
XVI	S-MART	transcript	339944	340945	.	+	.	seqedit=false;p_id=P5814;gene_id=YPL111W;tss_id=TSS4495;nbOverlaps=0;ID=YPL111W;Name=CAR1
X	S-MART	transcript	380249	381001	.	-	.	seqedit=false;p_id=P2840;gene_id=YJL035C;tss_id=TSS1890;nbOverlaps=0;ID=YJL035C;Name=TAD2
VI	S-MART	transcript	90986	93376	.	+	.	seqedit=false;p_id=P4414;gene_id=YFL023W;tss_id=TSS3215;nbOverlaps=0;ID=YFL023W;Name=BUD27
XVI	S-MART	transcript	337436	338620	.	-	.	seqedit=false;p_id=P3699;gene_id=YPL112C;tss_id=TSS6999;nbOverlaps=0;ID=YPL112C;Name=PEX25
X	S-MART	transcript	378825	380096	.	+	.	seqedit=false;p_id=P2712;gene_id=YJL036W;tss_id=TSS6545;nbOverlaps=0;ID=YJL036W;Name=SNX4
IV	S-MART	transcript	1447830	1450073	.	+	.	seqedit=false;p_id=P457;gene_id=YDR499W;tss_id=TSS4937;nbOverlaps=0;ID=YDR499W;Name=LCD1
XII	S-MART	transcript	263577	263954	.	-	.	seqedit=false;p_id=P5202;gene_id=YLR062C;tss_id=TSS777;nbOverlaps=0;ID=YLR062C;Name=BUD28
XII	S-MART	transcript	265456	266277	.	+	.	seqedit=false;p_id=P4252;gene_id=YLR064W;tss_id=TSS2066;nbOverlaps=0;ID=YLR064W;Name=PER33
XII	S-MART	transcript	264157	265254	.	+	.	seqedit=false;p_id=P1030;gene_id=YLR063W;tss_id=TSS3656;nbOverlaps=0;ID=YLR063W;Name=YLR063W
XII	S-MART	transcript	266373	266918	.	-	.	seqedit=false;p_id=P6609;gene_id=YLR065C;tss_id=TSS4131;nbOverlaps=0;ID=YLR065C;Name=ENV10
XII	S-MART	transcript	267169	267723	.	+	.	seqedit=false;p_id=P252;gene_id=YLR066W;tss_id=TSS2238;nbOverlaps=0;ID=YLR066W;Name=SPC3
XII	S-MART	transcript	267813	270710	.	-	.	seqedit=false;p_id=P6195;gene_id=YLR067C;tss_id=TSS626;nbOverlaps=0;ID=YLR067C;Name=PET309
XVI	S-MART	transcript	332100	335486	.	-	.	seqedit=false;p_id=P2310;gene_id=YPL115C;tss_id=TSS6885;nbOverlaps=0;ID=YPL115C;Name=BEM3
XII	S-MART	transcript	271008	271463	.	+	.	seqedit=false;p_id=P5961;gene_id=YLR068W;tss_id=TSS32;nbOverlaps=0;ID=YLR068W;Name=FYV7
XII	S-MART	transcript	271630	273915	.	-	.	seqedit=false;p_id=P1442;gene_id=YLR069C;tss_id=TSS4129;nbOverlaps=0;ID=YLR069C;Name=MEF1
XII	S-MART	transcript	274141	275211	.	-	.	seqedit=false;p_id=P600;gene_id=YLR070C;tss_id=TSS4837;nbOverlaps=0;ID=YLR070C;Name=XYL2
XII	S-MART	transcript	275378	278626	.	-	.	seqedit=false;p_id=P1253;gene_id=YLR071C;tss_id=TSS2694;nbOverlaps=0;ID=YLR071C;Name=RGR1
XII	S-MART	transcript	281019	281621	.	-	.	seqedit=false;p_id=P5932;gene_id=YLR073C;tss_id=TSS493;nbOverlaps=0;ID=YLR073C;Name=RFU1
XII	S-MART	transcript	278862	280943	.	+	.	seqedit=false;p_id=P5716;gene_id=YLR072W;tss_id=TSS5775;nbOverlaps=0;ID=YLR072W;Name=YLR072W
XII	S-MART	transcript	281956	282456	.	-	.	seqedit=false;p_id=P4932;gene_id=YLR074C;tss_id=TSS497;nbOverlaps=0;ID=YLR074C;Name=BUD20
XII	S-MART	transcript	282927	283592	.	+	.	seqedit=false;p_id=P1586;gene_id=YLR075W;tss_id=TSS4650;nbOverlaps=0;ID=YLR075W;Name=RPL10
XII	S-MART	transcript	283872	285623	.	+	.	seqedit=false;p_id=P3458;gene_id=YLR077W;tss_id=TSS2173;nbOverlaps=0;ID=YLR077W;Name=FMP25
XII	S-MART	transcript	283185	283607	.	-	.	seqedit=false;p_id=P5796;gene_id=YLR076C;tss_id=TSS699;nbOverlaps=0;ID=YLR076C;Name=YLR076C
XII	S-MART	transcript	285736	286559	.	-	.	seqedit=false;p_id=P2102;gene_id=YLR078C;tss_id=TSS64;nbOverlaps=0;ID=YLR078C;Name=BOS1
XII	S-MART	exon	285736	286467	.	-	.	ID=YLR078C-exon1;Name=BOS1-exon1;Parent=YLR078C
XII	S-MART	exon	286557	286559	.	-	.	ID=YLR078C-exon2;Name=BOS1-exon2;Parent=YLR078C
XII	S-MART	transcript	286820	287674	.	+	.	seqedit=false;p_id=P2096;gene_id=YLR079W;tss_id=TSS4820;nbOverlaps=0;ID=YLR079W;Name=SIC1
XII	S-MART	transcript	287916	289250	.	+	.	seqedit=false;p_id=P966;gene_id=YLR080W;tss_id=TSS1865;nbOverlaps=0;ID=YLR080W;Name=EMP46
XII	S-MART	transcript	290212	291936	.	+	.	seqedit=false;p_id=P6346;gene_id=YLR081W;tss_id=TSS1197;nbOverlaps=0;ID=YLR081W;Name=GAL2
XII	S-MART	transcript	292394	293572	.	-	.	seqedit=false;p_id=P1177;gene_id=YLR082C;tss_id=TSS5934;nbOverlaps=0;ID=YLR082C;Name=SRL2
XII	S-MART	transcript	294091	296094	.	-	.	seqedit=false;p_id=P1437;gene_id=YLR083C;tss_id=TSS1893;nbOverlaps=0;ID=YLR083C;Name=EMP70
XII	S-MART	transcript	296589	300251	.	-	.	seqedit=false;p_id=P4229;gene_id=YLR084C;tss_id=TSS3527;nbOverlaps=0;ID=YLR084C;Name=RAX2
XII	S-MART	transcript	300673	301989	.	-	.	seqedit=false;p_id=P4268;gene_id=YLR085C;tss_id=TSS2289;nbOverlaps=0;ID=YLR085C;Name=ARP6
XII	S-MART	transcript	302243	306499	.	+	.	seqedit=false;p_id=P2509;gene_id=YLR086W;tss_id=TSS2705;nbOverlaps=0;ID=YLR086W;Name=SMC4
XII	S-MART	transcript	306855	315731	.	-	.	seqedit=false;p_id=P3095;gene_id=YLR087C;tss_id=TSS3974;nbOverlaps=0;ID=YLR087C;Name=CSF1
XII	S-MART	transcript	316107	317951	.	+	.	seqedit=false;p_id=P1427;gene_id=YLR088W;tss_id=TSS2996;nbOverlaps=0;ID=YLR088W;Name=GAA1
XII	S-MART	transcript	318237	320015	.	-	.	seqedit=false;p_id=P6414;gene_id=YLR089C;tss_id=TSS3266;nbOverlaps=0;ID=YLR089C;Name=ALT1
XII	S-MART	transcript	320701	322080	.	+	.	seqedit=false;p_id=P330;gene_id=YLR090W;tss_id=TSS1477;nbOverlaps=0;ID=YLR090W;Name=XDJ1
XII	S-MART	transcript	322297	323178	.	+	.	seqedit=false;p_id=P4773;gene_id=YLR091W;tss_id=TSS7016;nbOverlaps=0;ID=YLR091W;Name=GEP5
XII	S-MART	transcript	323544	326225	.	+	.	seqedit=false;p_id=P939;gene_id=YLR092W;tss_id=TSS1644;nbOverlaps=0;ID=YLR092W;Name=SUL2
XII	S-MART	transcript	326513	327415	.	-	.	seqedit=false;p_id=P4508;gene_id=YLR093C;tss_id=TSS1628;nbOverlaps=0;ID=YLR093C;Name=NYV1
XII	S-MART	exon	326513	327258	.	-	.	ID=YLR093C-exon1;Name=NYV1-exon1;Parent=YLR093C
XII	S-MART	exon	327400	327415	.	-	.	ID=YLR093C-exon2;Name=NYV1-exon2;Parent=YLR093C
XVI	S-MART	transcript	335953	337143	.	-	.	seqedit=false;p_id=P1520;gene_id=YPL113C;tss_id=TSS2640;nbOverlaps=0;ID=YPL113C;Name=YPL113C
XII	S-MART	transcript	327730	329238	.	-	.	seqedit=false;p_id=P2984;gene_id=YLR094C;tss_id=TSS1166;nbOverlaps=0;ID=YLR094C;Name=GIS3
XII	S-MART	transcript	329677	332115	.	-	.	seqedit=false;p_id=P5960;gene_id=YLR095C;tss_id=TSS5760;nbOverlaps=0;ID=YLR095C;Name=IOC2
XII	S-MART	transcript	332590	336033	.	+	.	seqedit=false;p_id=P3933;gene_id=YLR096W;tss_id=TSS760;nbOverlaps=0;ID=YLR096W;Name=KIN2
XII	S-MART	transcript	336231	337265	.	-	.	seqedit=false;p_id=P5484;gene_id=YLR097C;tss_id=TSS634;nbOverlaps=0;ID=YLR097C;Name=HRT3
XII	S-MART	transcript	337527	339473	.	-	.	seqedit=false;p_id=P1228;gene_id=YLR098C;tss_id=TSS1293;nbOverlaps=0;ID=YLR098C;Name=CHA4
XII	S-MART	transcript	339744	340928	.	-	.	seqedit=false;p_id=P4472;gene_id=YLR099C;tss_id=TSS6304;nbOverlaps=0;ID=YLR099C;Name=ICT1
XII	S-MART	transcript	341325	341588	.	+	.	seqedit=false;p_id=P1039;gene_id=YLR099W-A;tss_id=TSS2482;nbOverlaps=0;ID=YLR099W-A;Name=YLR099W-A
XII	S-MART	transcript	341810	342853	.	+	.	seqedit=false;p_id=P5049;gene_id=YLR100W;tss_id=TSS6465;nbOverlaps=0;ID=YLR100W;Name=ERG27
XII	S-MART	transcript	342970	343767	.	-	.	seqedit=false;p_id=P532;gene_id=YLR102C;tss_id=TSS676;nbOverlaps=0;ID=YLR102C;Name=APC9
XII	S-MART	transcript	342566	342961	.	-	.	seqedit=false;p_id=P1930;gene_id=YLR101C;tss_id=TSS750;nbOverlaps=0;ID=YLR101C;Name=YLR101C
XII	S-MART	transcript	343989	345941	.	-	.	seqedit=false;p_id=P6379;gene_id=YLR103C;tss_id=TSS1587;nbOverlaps=0;ID=YLR103C;Name=CDC45
XII	S-MART	transcript	346585	346980	.	+	.	seqedit=false;p_id=P1764;gene_id=YLR104W;tss_id=TSS4946;nbOverlaps=0;ID=YLR104W;Name=LCL2
XII	S-MART	transcript	347047	348180	.	-	.	seqedit=false;p_id=P2800;gene_id=YLR105C;tss_id=TSS3806;nbOverlaps=0;ID=YLR105C;Name=SEN2
XII	S-MART	transcript	349006	363738	.	-	.	seqedit=false;p_id=P2933;gene_id=YLR106C;tss_id=TSS5004;nbOverlaps=0;ID=YLR106C;Name=MDN1
XII	S-MART	transcript	364116	365330	.	+	.	seqedit=false;p_id=P1880;gene_id=YLR107W;tss_id=TSS3010;nbOverlaps=0;ID=YLR107W;Name=REX3
XII	S-MART	transcript	368781	369311	.	+	.	seqedit=false;p_id=P999;gene_id=YLR109W;tss_id=TSS1275;nbOverlaps=0;ID=YLR109W;Name=AHP1
XII	S-MART	transcript	366667	368124	.	-	.	seqedit=false;p_id=P4706;gene_id=YLR108C;tss_id=TSS5248;nbOverlaps=0;ID=YLR108C;Name=YLR108C
XII	S-MART	transcript	369697	370098	.	-	.	seqedit=false;p_id=P2390;gene_id=YLR110C;tss_id=TSS6476;nbOverlaps=0;ID=YLR110C;Name=CCW12
XII	S-MART	transcript	371620	372927	.	+	.	seqedit=false;p_id=P1675;gene_id=YLR113W;tss_id=TSS5280;nbOverlaps=0;ID=YLR113W;Name=HOG1
XII	S-MART	transcript	370391	370723	.	+	.	seqedit=false;p_id=P5488;gene_id=YLR111W;tss_id=TSS4769;nbOverlaps=0;ID=YLR111W;Name=YLR111W
XII	S-MART	transcript	370791	371210	.	+	.	seqedit=false;p_id=P5122;gene_id=YLR112W;tss_id=TSS2270;nbOverlaps=0;ID=YLR112W;Name=YLR112W
XII	S-MART	transcript	374944	377238	.	-	.	seqedit=false;p_id=P5417;gene_id=YLR114C;tss_id=TSS3339;nbOverlaps=0;ID=YLR114C;Name=AVL9
XII	S-MART	transcript	377985	380564	.	+	.	seqedit=false;p_id=P4741;gene_id=YLR115W;tss_id=TSS3046;nbOverlaps=0;ID=YLR115W;Name=CFT2
XII	S-MART	transcript	380822	382252	.	+	.	seqedit=false;p_id=P2431;gene_id=YLR116W;tss_id=TSS1608;nbOverlaps=0;ID=YLR116W;Name=MSL5
XII	S-MART	transcript	382471	384534	.	-	.	seqedit=false;p_id=P6131;gene_id=YLR117C;tss_id=TSS796;nbOverlaps=0;ID=YLR117C;Name=CLF1
XII	S-MART	transcript	490406	490594	.	+	.	seqedit=false;p_id=P2219;gene_id=YLR162W-A;tss_id=TSS4813;nbOverlaps=0;ID=YLR162W-A;Name=RRT15
XII	S-MART	transcript	384725	385408	.	-	.	seqedit=false;p_id=P4242;gene_id=YLR118C;tss_id=TSS6880;nbOverlaps=0;ID=YLR118C;Name=YLR118C
VII	S-MART	transcript	419527	420555	.	-	.	seqedit=false;p_id=P5238;gene_id=YGL040C;tss_id=TSS2769;nbOverlaps=0;ID=YGL040C;Name=HEM2
VII	S-MART	transcript	423961	425007	.	+	.	seqedit=false;p_id=P264;gene_id=YGL039W;tss_id=TSS4850;nbOverlaps=0;ID=YGL039W;Name=YGL039W
VII	S-MART	transcript	418704	418886	.	-	.	seqedit=false;p_id=P4847;gene_id=YGL041C-B;tss_id=TSS6856;nbOverlaps=0;ID=YGL041C-B;Name=YGL041C-B
VII	S-MART	transcript	419022	419225	.	-	.	seqedit=false;p_id=P6230;gene_id=YGL041C;tss_id=TSS1568;nbOverlaps=0;ID=YGL041C;Name=YGL041C
VII	S-MART	transcript	418825	419289	.	+	.	seqedit=false;p_id=P1383;gene_id=YGL041W-A;tss_id=TSS6098;nbOverlaps=0;ID=YGL041W-A;Name=YGL041W-A
VII	S-MART	transcript	417483	418412	.	+	.	seqedit=false;p_id=P3040;gene_id=YGL043W;tss_id=TSS453;nbOverlaps=0;ID=YGL043W;Name=DST1
VII	S-MART	transcript	418288	418593	.	-	.	seqedit=false;p_id=P3921;gene_id=YGL042C;tss_id=TSS2903;nbOverlaps=0;ID=YGL042C;Name=YGL042C
VII	S-MART	transcript	416146	417036	.	-	.	seqedit=false;p_id=P1086;gene_id=YGL044C;tss_id=TSS1217;nbOverlaps=0;ID=YGL044C;Name=RNA15
VII	S-MART	transcript	414102	415730	.	+	.	seqedit=false;p_id=P745;gene_id=YGL045W;tss_id=TSS4403;nbOverlaps=0;ID=YGL045W;Name=RIM8
VII	S-MART	transcript	411552	412160	.	+	.	seqedit=false;p_id=P243;gene_id=YGL047W;tss_id=TSS1329;nbOverlaps=0;ID=YGL047W;Name=ALG13
VII	S-MART	transcript	410069	411286	.	-	.	seqedit=false;p_id=P3777;gene_id=YGL048C;tss_id=TSS566;nbOverlaps=0;ID=YGL048C;Name=RPT6
II	S-MART	transcript	245906	246547	.	+	.	seqedit=false;p_id=P5211;gene_id=YBR005W;tss_id=TSS5278;nbOverlaps=0;ID=YBR005W;Name=RCR1
VII	S-MART	transcript	406860	409604	.	-	.	seqedit=false;p_id=P4557;gene_id=YGL049C;tss_id=TSS1971;nbOverlaps=0;ID=YGL049C;Name=TIF4632
VI	S-MART	transcript	80419	81912	.	-	.	seqedit=false;p_id=P5131;gene_id=YFL027C;tss_id=TSS5212;nbOverlaps=0;ID=YFL027C;Name=GYP8
VII	S-MART	transcript	403687	404391	.	+	.	seqedit=false;p_id=P4310;gene_id=YGL051W;tss_id=TSS2862;nbOverlaps=0;ID=YGL051W;Name=MST27
VII	S-MART	transcript	402589	403302	.	+	.	seqedit=false;p_id=P3328;gene_id=YGL053W;tss_id=TSS5710;nbOverlaps=0;ID=YGL053W;Name=PRM8
II	S-MART	transcript	255373	255684	.	-	.	seqedit=false;p_id=P2722;gene_id=YBR009C;tss_id=TSS6540;nbOverlaps=0;ID=YBR009C;Name=HHF1
II	S-MART	transcript	256331	256741	.	+	.	seqedit=false;p_id=P1684;gene_id=YBR010W;tss_id=TSS2877;nbOverlaps=0;ID=YBR010W;Name=HHT1
VII	S-MART	transcript	398628	400160	.	+	.	seqedit=false;p_id=P1182;gene_id=YGL055W;tss_id=TSS5685;nbOverlaps=0;ID=YGL055W;Name=OLE1
II	S-MART	transcript	259869	261191	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P2222;gene_id=YBR012W-A;tss_id=TSS5304;nbOverlaps=12;ID=YBR012W-A;Name=YBR012W-A
II	S-MART	transcript	259147	259566	.	-	.	seqedit=false;p_id=P4929;gene_id=YBR012C;tss_id=TSS1190;nbOverlaps=0;ID=YBR012C;Name=YBR012C
II	S-MART	transcript	259869	265140	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P6345;gene_id=YBR012W-B;tss_id=TSS5304;nbOverlaps=404;ID=YBR012W-B;Name=YBR012W-B
II	S-MART	exon	259869	261173	.	+	.	ID=YBR012W-B-exon1;Name=YBR012W-B-exon1;Parent=YBR012W-B
II	S-MART	exon	261175	265140	.	+	.	ID=YBR012W-B-exon2;Name=YBR012W-B-exon2;Parent=YBR012W-B
VII	S-MART	transcript	392223	393698	.	+	.	seqedit=false;p_id=P757;gene_id=YGL059W;tss_id=TSS6554;nbOverlaps=0;ID=YGL059W;Name=PKP2
VII	S-MART	transcript	390065	391990	.	+	.	seqedit=false;p_id=P1715;gene_id=YGL060W;tss_id=TSS2767;nbOverlaps=0;ID=YGL060W;Name=YBP2
VII	S-MART	transcript	388968	389711	.	-	.	seqedit=false;p_id=P2209;gene_id=YGL061C;tss_id=TSS854;nbOverlaps=0;ID=YGL061C;Name=DUO1
II	S-MART	transcript	265492	265881	.	-	.	seqedit=false;p_id=P1591;gene_id=YBR013C;tss_id=TSS5396;nbOverlaps=0;ID=YBR013C;Name=YBR013C
II	S-MART	transcript	267710	269503	.	-	.	seqedit=false;p_id=P6197;gene_id=YBR015C;tss_id=TSS1583;nbOverlaps=0;ID=YBR015C;Name=MNN2
II	S-MART	transcript	270947	273703	.	-	.	seqedit=false;p_id=P678;gene_id=YBR017C;tss_id=TSS6951;nbOverlaps=0;ID=YBR017C;Name=KAP104
VII	S-MART	transcript	381523	383208	.	-	.	seqedit=false;p_id=P5987;gene_id=YGL064C;tss_id=TSS1469;nbOverlaps=0;ID=YGL064C;Name=MRH4
VII	S-MART	transcript	379760	381271	.	-	.	seqedit=false;p_id=P6441;gene_id=YGL065C;tss_id=TSS3785;nbOverlaps=0;ID=YGL065C;Name=ALG2
VII	S-MART	transcript	377609	379582	.	+	.	seqedit=false;p_id=P6408;gene_id=YGL066W;tss_id=TSS808;nbOverlaps=0;ID=YGL066W;Name=SGF73
VII	S-MART	transcript	376101	377255	.	+	.	seqedit=false;p_id=P3676;gene_id=YGL067W;tss_id=TSS3716;nbOverlaps=0;ID=YGL067W;Name=NPY1
VII	S-MART	transcript	375087	375671	.	+	.	seqedit=false;p_id=P1594;gene_id=YGL068W;tss_id=TSS2939;nbOverlaps=0;ID=YGL068W;Name=MNP1
VII	S-MART	transcript	374459	374827	.	-	.	seqedit=false;p_id=P1021;gene_id=YGL070C;tss_id=TSS5250;nbOverlaps=0;ID=YGL070C;Name=RPB9
VII	S-MART	transcript	375050	375514	.	-	.	seqedit=false;p_id=P3624;gene_id=YGL069C;tss_id=TSS253;nbOverlaps=0;ID=YGL069C;Name=YGL069C
VII	S-MART	transcript	372012	374084	.	+	.	seqedit=false;p_id=P425;gene_id=YGL071W;tss_id=TSS2299;nbOverlaps=0;ID=YGL071W;Name=AFT1
VII	S-MART	transcript	368753	371254	.	+	.	seqedit=false;p_id=P1108;gene_id=YGL073W;tss_id=TSS6808;nbOverlaps=0;ID=YGL073W;Name=HSF1
VII	S-MART	transcript	371003	371362	.	-	.	seqedit=false;p_id=P3425;gene_id=YGL072C;tss_id=TSS6467;nbOverlaps=0;ID=YGL072C;Name=YGL072C
VII	S-MART	transcript	366925	368088	.	-	.	seqedit=false;p_id=P6565;gene_id=YGL075C;tss_id=TSS764;nbOverlaps=0;ID=YGL075C;Name=MPS2
II	S-MART	transcript	294024	294356	.	-	.	seqedit=false;p_id=P487;gene_id=YBR027C;tss_id=TSS1967;nbOverlaps=0;ID=YBR027C;Name=YBR027C
VII	S-MART	transcript	364335	365996	.	-	.	seqedit=false;p_id=P4161;gene_id=YGL076C;tss_id=TSS3423;nbOverlaps=0;ID=YGL076C;Name=RPL7A
VII	S-MART	exon	364335	364964	.	-	.	ID=YGL076C-exon1;Name=RPL7A-exon1;Parent=YGL076C
VII	S-MART	exon	365433	365526	.	-	.	ID=YGL076C-exon2;Name=RPL7A-exon2;Parent=YGL076C
VII	S-MART	exon	365986	365996	.	-	.	ID=YGL076C-exon3;Name=RPL7A-exon3;Parent=YGL076C
II	S-MART	transcript	298292	299950	.	+	.	seqedit=false;p_id=P5300;gene_id=YBR030W;tss_id=TSS5669;nbOverlaps=0;ID=YBR030W;Name=RKM3
II	S-MART	transcript	300166	301254	.	+	.	seqedit=false;p_id=P3680;gene_id=YBR031W;tss_id=TSS5652;nbOverlaps=0;ID=YBR031W;Name=RPL4A
II	S-MART	transcript	301944	304703	.	+	.	seqedit=false;p_id=P3257;gene_id=YBR033W;tss_id=TSS1726;nbOverlaps=0;ID=YBR033W;Name=EDS1
VI	S-MART	transcript	79344	80213	.	-	.	seqedit=false;p_id=P4392;gene_id=YFL028C;tss_id=TSS3044;nbOverlaps=0;ID=YFL028C;Name=CAF16
VII	S-MART	transcript	362225	363916	.	-	.	seqedit=false;p_id=P2261;gene_id=YGL077C;tss_id=TSS3172;nbOverlaps=0;ID=YGL077C;Name=HNM1
VII	S-MART	transcript	360288	361859	.	-	.	seqedit=false;p_id=P1461;gene_id=YGL078C;tss_id=TSS2364;nbOverlaps=0;ID=YGL078C;Name=DBP3
VII	S-MART	transcript	359444	360100	.	+	.	seqedit=false;p_id=P5659;gene_id=YGL079W;tss_id=TSS3758;nbOverlaps=0;ID=YGL079W;Name=KXD1
VIII	S-MART	transcript	129481	130448	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:11555:16242#0--HWUSI-EAS1656_0009_FC:3:25:16316:16565#0--HWUSI-EAS1656_00;p_id=P1826;gene_id=YHR012W;tss_id=TSS2829;nbOverlaps=252;ID=YHR012W;Name=VPS29
VIII	S-MART	exon	129481	129528	.	+	.	ID=YHR012W-exon1;Name=VPS29-exon1;Parent=YHR012W
VIII	S-MART	exon	129648	130448	.	+	.	ID=YHR012W-exon2;Name=VPS29-exon2;Parent=YHR012W
VII	S-MART	transcript	358636	359028	.	+	.	seqedit=false;p_id=P5148;gene_id=YGL080W;tss_id=TSS2810;nbOverlaps=0;ID=YGL080W;Name=FMP37
VII	S-MART	transcript	353058	355472	.	+	.	seqedit=false;p_id=P5911;gene_id=YGL083W;tss_id=TSS5188;nbOverlaps=0;ID=YGL083W;Name=SCY1
VII	S-MART	transcript	357377	358339	.	+	.	seqedit=false;p_id=P6456;gene_id=YGL081W;tss_id=TSS5217;nbOverlaps=0;ID=YGL081W;Name=YGL081W
VII	S-MART	transcript	355827	356972	.	+	.	seqedit=false;p_id=P4079;gene_id=YGL082W;tss_id=TSS3439;nbOverlaps=0;ID=YGL082W;Name=YGL082W
VII	S-MART	transcript	350616	352298	.	-	.	seqedit=false;p_id=P2670;gene_id=YGL084C;tss_id=TSS3932;nbOverlaps=0;ID=YGL084C;Name=GUP1
VII	S-MART	transcript	349616	350440	.	+	.	seqedit=false;p_id=P6426;gene_id=YGL085W;tss_id=TSS114;nbOverlaps=0;ID=YGL085W;Name=LCL3
VII	S-MART	transcript	347119	349368	.	+	.	seqedit=false;p_id=P2105;gene_id=YGL086W;tss_id=TSS3778;nbOverlaps=0;ID=YGL086W;Name=MAD1
VII	S-MART	transcript	346406	346904	.	-	.	seqedit=false;p_id=P259;gene_id=YGL087C;tss_id=TSS1211;nbOverlaps=0;ID=YGL087C;Name=MMS2
VII	S-MART	exon	346406	346808	.	-	.	ID=YGL087C-exon1;Name=MMS2-exon1;Parent=YGL087C
VII	S-MART	exon	346894	346904	.	-	.	ID=YGL087C-exon2;Name=MMS2-exon2;Parent=YGL087C
II	S-MART	transcript	324341	326059	.	-	.	seqedit=false;p_id=P5207;gene_id=YBR044C;tss_id=TSS5872;nbOverlaps=0;ID=YBR044C;Name=TCM62
II	S-MART	transcript	328173	330092	.	-	.	seqedit=false;p_id=P1808;gene_id=YBR045C;tss_id=TSS2171;nbOverlaps=0;ID=YBR045C;Name=GIP1
VII	S-MART	transcript	344791	345153	.	-	.	seqedit=false;p_id=P1713;gene_id=YGL089C;tss_id=TSS5323;nbOverlaps=0;ID=YGL089C;Name=MF(ALPHA)2
VII	S-MART	transcript	345836	346201	.	+	.	seqedit=false;p_id=P5291;gene_id=YGL088W;tss_id=TSS2904;nbOverlaps=0;ID=YGL088W;Name=YGL088W
VII	S-MART	transcript	343319	344584	.	+	.	seqedit=false;p_id=P760;gene_id=YGL090W;tss_id=TSS3320;nbOverlaps=0;ID=YGL090W;Name=LIF1
VII	S-MART	transcript	342056	343042	.	-	.	seqedit=false;p_id=P6255;gene_id=YGL091C;tss_id=TSS6795;nbOverlaps=0;ID=YGL091C;Name=NBP35
VII	S-MART	transcript	337906	341859	.	+	.	seqedit=false;p_id=P23;gene_id=YGL092W;tss_id=TSS1963;nbOverlaps=0;ID=YGL092W;Name=NUP145
VII	S-MART	transcript	334886	337639	.	+	.	seqedit=false;p_id=P6266;gene_id=YGL093W;tss_id=TSS2629;nbOverlaps=0;ID=YGL093W;Name=SPC105
VII	S-MART	transcript	331118	334465	.	-	.	seqedit=false;p_id=P1387;gene_id=YGL094C;tss_id=TSS1914;nbOverlaps=0;ID=YGL094C;Name=PAN2
XII	S-MART	transcript	570776	571858	.	-	.	seqedit=false;p_id=P4380;gene_id=YLR215C;tss_id=TSS6742;nbOverlaps=0;ID=YLR215C;Name=CDC123
XII	S-MART	transcript	572096	573211	.	-	.	seqedit=false;p_id=P6271;gene_id=YLR216C;tss_id=TSS5804;nbOverlaps=0;ID=YLR216C;Name=CPR6
XIV	S-MART	transcript	343636	345276	.	-	.	seqedit=false;p_id=P6206;gene_id=YNL154C;tss_id=TSS166;nbOverlaps=0;ID=YNL154C;Name=YCK2
XIV	S-MART	transcript	341069	341968	.	-	.	seqedit=false;p_id=P2205;gene_id=YNL156C;tss_id=TSS4089;nbOverlaps=0;ID=YNL156C;Name=NSG2
XII	S-MART	transcript	574151	576337	.	+	.	seqedit=false;p_id=P2897;gene_id=YLR219W;tss_id=TSS2861;nbOverlaps=0;ID=YLR219W;Name=MSC3
XII	S-MART	transcript	576825	577793	.	+	.	seqedit=false;p_id=P3395;gene_id=YLR220W;tss_id=TSS5523;nbOverlaps=0;ID=YLR220W;Name=CCC1
XIV	S-MART	transcript	339612	340208	.	+	.	seqedit=false;p_id=P3343;gene_id=YNL158W;tss_id=TSS4041;nbOverlaps=0;ID=YNL158W;Name=PGA1
XII	S-MART	transcript	579318	581771	.	-	.	seqedit=false;p_id=P2257;gene_id=YLR222C;tss_id=TSS1395;nbOverlaps=0;ID=YLR222C;Name=UTP13
XIV	S-MART	transcript	336545	337609	.	+	.	seqedit=false;p_id=P4893;gene_id=YNL160W;tss_id=TSS6894;nbOverlaps=0;ID=YNL160W;Name=YGP1
VI	S-MART	transcript	78055	79161	.	-	.	seqedit=false;p_id=P4872;gene_id=YFL029C;tss_id=TSS5795;nbOverlaps=0;ID=YFL029C;Name=CAK1
XII	S-MART	transcript	582233	585490	.	-	.	seqedit=false;p_id=P4771;gene_id=YLR223C;tss_id=TSS6387;nbOverlaps=0;ID=YLR223C;Name=IFH1
X	S-MART	transcript	393967	395511	.	+	.	seqedit=false;p_id=P1984;gene_id=YJL025W;tss_id=TSS2879;nbOverlaps=0;ID=YJL025W;Name=RRN7
X	S-MART	transcript	393066	393287	.	-	.	seqedit=false;p_id=P5722;gene_id=YJL026C-A;tss_id=TSS5296;nbOverlaps=0;ID=YJL026C-A;Name=YJL026C-A
X	S-MART	transcript	392404	393603	.	+	.	seqedit=false;p_id=P1167;gene_id=YJL026W;tss_id=TSS5238;nbOverlaps=0;ID=YJL026W;Name=RNR2
XIV	S-MART	transcript	330329	330547	.	+	.	seqedit=false;p_id=P2980;gene_id=YNL162W-A;tss_id=TSS7034;nbOverlaps=0;ID=YNL162W-A;Name=YNL162W-A
X	S-MART	transcript	391833	392249	.	-	.	seqedit=false;p_id=P6374;gene_id=YJL027C;tss_id=TSS3802;nbOverlaps=0;ID=YJL027C;Name=YJL027C
X	S-MART	transcript	391311	391646	.	+	.	seqedit=false;p_id=P5861;gene_id=YJL028W;tss_id=TSS3223;nbOverlaps=0;ID=YJL028W;Name=YJL028W
X	S-MART	transcript	387657	388247	.	+	.	seqedit=false;p_id=P1738;gene_id=YJL030W;tss_id=TSS2488;nbOverlaps=0;ID=YJL030W;Name=MAD2
X	S-MART	transcript	386368	387438	.	-	.	seqedit=false;p_id=P3070;gene_id=YJL031C;tss_id=TSS442;nbOverlaps=0;ID=YJL031C;Name=BET4
X	S-MART	exon	386368	387348	.	-	.	ID=YJL031C-exon1;Name=BET4-exon1;Parent=YJL031C
X	S-MART	exon	387436	387438	.	-	.	ID=YJL031C-exon2;Name=BET4-exon2;Parent=YJL031C
XIV	S-MART	transcript	319416	321359	.	-	.	seqedit=false;p_id=P1638;gene_id=YNL167C;tss_id=TSS2148;nbOverlaps=0;ID=YNL167C;Name=SKO1
XIV	S-MART	transcript	318030	318809	.	-	.	seqedit=false;p_id=P3802;gene_id=YNL168C;tss_id=TSS5722;nbOverlaps=0;ID=YNL168C;Name=FMP41
XIV	S-MART	transcript	316169	317671	.	-	.	seqedit=false;p_id=P1034;gene_id=YNL169C;tss_id=TSS6995;nbOverlaps=0;ID=YNL169C;Name=PSD1
XII	S-MART	transcript	604574	604879	.	+	.	seqedit=false;p_id=P1977;gene_id=YLR230W;tss_id=TSS4728;nbOverlaps=0;ID=YLR230W;Name=YLR230W
XIV	S-MART	transcript	315978	316373	.	+	.	seqedit=false;p_id=P3571;gene_id=YNL170W;tss_id=TSS6276;nbOverlaps=0;ID=YNL170W;Name=YNL170W
XII	S-MART	transcript	606830	607177	.	+	.	seqedit=false;p_id=P93;gene_id=YLR232W;tss_id=TSS378;nbOverlaps=0;ID=YLR232W;Name=YLR232W
XIV	S-MART	transcript	308957	310057	.	-	.	seqedit=false;p_id=P4933;gene_id=YNL173C;tss_id=TSS1933;nbOverlaps=0;ID=YNL173C;Name=MDG1
XII	S-MART	transcript	612367	614163	.	+	.	seqedit=false;p_id=P772;gene_id=YLR237W;tss_id=TSS6791;nbOverlaps=0;ID=YLR237W;Name=THI7
II	S-MART	transcript	8177	8482	.	+	.	seqedit=false;p_id=P5950;gene_id=YBL108W;tss_id=TSS1667;nbOverlaps=0;ID=YBL108W;Name=YBL108W
X	S-MART	transcript	375115	375774	.	-	.	seqedit=false;p_id=P4722;gene_id=YJL038C;tss_id=TSS3904;nbOverlaps=0;ID=YJL038C;Name=LOH1
XII	S-MART	transcript	611794	612117	.	-	.	seqedit=false;p_id=P5178;gene_id=YLR236C;tss_id=TSS6038;nbOverlaps=0;ID=YLR236C;Name=YLR236C
XVI	S-MART	transcript	326628	327662	.	+	.	seqedit=false;p_id=P5362;gene_id=YPL118W;tss_id=TSS5039;nbOverlaps=0;ID=YPL118W;Name=MRP51
X	S-MART	transcript	365784	368373	.	+	.	seqedit=false;p_id=P6333;gene_id=YJL041W;tss_id=TSS6522;nbOverlaps=0;ID=YJL041W;Name=NSP1
X	S-MART	exon	365784	365784	.	+	.	ID=YJL041W-exon1;Name=NSP1-exon1;Parent=YJL041W
X	S-MART	exon	365903	368373	.	+	.	ID=YJL041W-exon2;Name=NSP1-exon2;Parent=YJL041W
XIV	S-MART	transcript	302680	303402	.	+	.	seqedit=false;p_id=P1545;gene_id=YNL178W;tss_id=TSS135;nbOverlaps=0;ID=YNL178W;Name=RPS3
XIV	S-MART	transcript	299654	300649	.	-	.	seqedit=false;p_id=P2947;gene_id=YNL180C;tss_id=TSS6735;nbOverlaps=0;ID=YNL180C;Name=RHO5
XIV	S-MART	transcript	300666	301103	.	-	.	seqedit=false;p_id=P739;gene_id=YNL179C;tss_id=TSS3369;nbOverlaps=0;ID=YNL179C;Name=YNL179C
XIV	S-MART	transcript	295960	297627	.	-	.	seqedit=false;p_id=P2492;gene_id=YNL182C;tss_id=TSS802;nbOverlaps=0;ID=YNL182C;Name=IPI3
XIV	S-MART	transcript	298335	299558	.	+	.	seqedit=false;p_id=P3473;gene_id=YNL181W;tss_id=TSS2983;nbOverlaps=0;ID=YNL181W;Name=YNL181W
XIV	S-MART	transcript	293137	295509	.	-	.	seqedit=false;p_id=P3146;gene_id=YNL183C;tss_id=TSS4059;nbOverlaps=0;ID=YNL183C;Name=NPR1
XIV	S-MART	transcript	292193	292669	.	-	.	seqedit=false;p_id=P6378;gene_id=YNL185C;tss_id=TSS6720;nbOverlaps=0;ID=YNL185C;Name=MRPL19
XIV	S-MART	transcript	292557	292883	.	-	.	seqedit=false;p_id=P5895;gene_id=YNL184C;tss_id=TSS176;nbOverlaps=0;ID=YNL184C;Name=YNL184C
XIV	S-MART	transcript	289498	291876	.	+	.	seqedit=false;p_id=P2146;gene_id=YNL186W;tss_id=TSS4944;nbOverlaps=0;ID=YNL186W;Name=UBP10
XIV	S-MART	transcript	287994	289067	.	+	.	seqedit=false;p_id=P6660;gene_id=YNL187W;tss_id=TSS3748;nbOverlaps=0;ID=YNL187W;Name=SWT21
XVI	S-MART	transcript	88517	90316	.	+	.	seqedit=false;p_id=P1363;gene_id=YPL243W;tss_id=TSS6870;nbOverlaps=0;ID=YPL243W;Name=SRP68
X	S-MART	transcript	342522	345743	.	+	.	seqedit=false;p_id=P1174;gene_id=YJL050W;tss_id=TSS130;nbOverlaps=0;ID=YJL050W;Name=MTR4
X	S-MART	transcript	345973	347325	.	+	.	seqedit=false;p_id=P2165;gene_id=YJL049W;tss_id=TSS2765;nbOverlaps=0;ID=YJL049W;Name=YJL049W
X	S-MART	transcript	339787	342255	.	+	.	seqedit=false;p_id=P4732;gene_id=YJL051W;tss_id=TSS5826;nbOverlaps=0;ID=YJL051W;Name=IRC8
XIV	S-MART	transcript	282395	283009	.	+	.	seqedit=false;p_id=P4262;gene_id=YNL190W;tss_id=TSS1402;nbOverlaps=0;ID=YNL190W;Name=YNL190W
X	S-MART	transcript	338271	339269	.	+	.	seqedit=false;p_id=P5193;gene_id=YJL052W;tss_id=TSS6557;nbOverlaps=0;ID=YJL052W;Name=TDH1
XIV	S-MART	transcript	284260	285888	.	+	.	seqedit=false;p_id=P3615;gene_id=YNL189W;tss_id=TSS842;nbOverlaps=0;ID=YNL189W;Name=SRP1
XII	S-MART	transcript	642627	644336	.	+	.	seqedit=false;p_id=P3409;gene_id=YLR253W;tss_id=TSS649;nbOverlaps=0;ID=YLR253W;Name=YLR253W
X	S-MART	transcript	334265	335701	.	+	.	seqedit=false;p_id=P3728;gene_id=YJL054W;tss_id=TSS996;nbOverlaps=0;ID=YJL054W;Name=TIM54
XII	S-MART	transcript	645600	645953	.	-	.	seqedit=false;p_id=P5881;gene_id=YLR255C;tss_id=TSS4073;nbOverlaps=0;ID=YLR255C;Name=YLR255C
X	S-MART	transcript	333357	334094	.	+	.	seqedit=false;p_id=P6041;gene_id=YJL055W;tss_id=TSS3139;nbOverlaps=0;ID=YJL055W;Name=YJL055W
X	S-MART	transcript	328118	330121	.	-	.	seqedit=false;p_id=P2748;gene_id=YJL057C;tss_id=TSS5454;nbOverlaps=0;ID=YJL057C;Name=IKS1
XII	S-MART	transcript	658826	659791	.	+	.	seqedit=false;p_id=P3107;gene_id=YLR257W;tss_id=TSS597;nbOverlaps=0;ID=YLR257W;Name=YLR257W
XII	S-MART	transcript	663284	665002	.	-	.	seqedit=false;p_id=P4048;gene_id=YLR259C;tss_id=TSS4264;nbOverlaps=0;ID=YLR259C;Name=HSP60
XII	S-MART	transcript	665844	667907	.	+	.	seqedit=false;p_id=P2935;gene_id=YLR260W;tss_id=TSS4229;nbOverlaps=0;ID=YLR260W;Name=LCB5
XII	S-MART	transcript	668237	668563	.	-	.	seqedit=false;p_id=P5485;gene_id=YLR261C;tss_id=TSS5742;nbOverlaps=0;ID=YLR261C;Name=VPS63
XII	S-MART	transcript	668244	668891	.	-	.	seqedit=false;p_id=P1569;gene_id=YLR262C;tss_id=TSS4768;nbOverlaps=0;ID=YLR262C;Name=YPT6
XII	S-MART	transcript	669468	669662	.	-	.	seqedit=false;p_id=P4044;gene_id=YLR262C-A;tss_id=TSS1133;nbOverlaps=0;ID=YLR262C-A;Name=TMA7
XII	S-MART	transcript	670340	672823	.	+	.	seqedit=false;p_id=P6477;gene_id=YLR263W;tss_id=TSS3787;nbOverlaps=0;ID=YLR263W;Name=RED1
X	S-MART	transcript	315054	315557	.	-	.	seqedit=false;p_id=P3085;gene_id=YJL065C;tss_id=TSS4381;nbOverlaps=0;ID=YJL065C;Name=DLS1
XII	S-MART	transcript	673131	673334	.	+	.	seqedit=false;p_id=P4368;gene_id=YLR264W;tss_id=TSS7001;nbOverlaps=0;ID=YLR264W;Name=RPS28B
XVI	S-MART	transcript	324411	326264	.	-	.	seqedit=false;p_id=P2254;gene_id=YPL119C;tss_id=TSS810;nbOverlaps=0;ID=YPL119C;Name=DBP1
XII	S-MART	transcript	674427	675455	.	-	.	seqedit=false;p_id=P3449;gene_id=YLR265C;tss_id=TSS454;nbOverlaps=0;ID=YLR265C;Name=NEJ1
XII	S-MART	transcript	675619	677724	.	-	.	seqedit=false;p_id=P400;gene_id=YLR266C;tss_id=TSS4425;nbOverlaps=0;ID=YLR266C;Name=PDR8
XII	S-MART	transcript	678212	679924	.	+	.	seqedit=false;p_id=P2986;gene_id=YLR267W;tss_id=TSS6191;nbOverlaps=0;ID=YLR267W;Name=BOP2
XII	S-MART	transcript	680200	680844	.	+	.	seqedit=false;p_id=P3403;gene_id=YLR268W;tss_id=TSS1039;nbOverlaps=0;ID=YLR268W;Name=SEC22
XIV	S-MART	transcript	532659	533870	.	+	.	seqedit=false;p_id=P1922;gene_id=YNL051W;tss_id=TSS4054;nbOverlaps=0;ID=YNL051W;Name=COG5
X	S-MART	transcript	361249	365445	.	+	.	seqedit=false;p_id=P5354;gene_id=YJL042W;tss_id=TSS6040;nbOverlaps=0;ID=YJL042W;Name=MHP1
VI	S-MART	transcript	239114	239827	.	-	.	seqedit=false;p_id=P2974;gene_id=YFR043C;tss_id=TSS3003;nbOverlaps=0;ID=YFR043C;Name=IRC6
VI	S-MART	transcript	239992	241437	.	-	.	seqedit=false;p_id=P3895;gene_id=YFR044C;tss_id=TSS4923;nbOverlaps=0;ID=YFR044C;Name=DUG1
VI	S-MART	transcript	243074	244159	.	-	.	seqedit=false;p_id=P280;gene_id=YFR046C;tss_id=TSS3649;nbOverlaps=0;ID=YFR046C;Name=CNN1
VI	S-MART	transcript	241998	242999	.	+	.	seqedit=false;p_id=P1094;gene_id=YFR045W;tss_id=TSS6440;nbOverlaps=0;ID=YFR045W;Name=YFR045W
VI	S-MART	exon	241998	242009	.	+	.	ID=YFR045W-exon1;Name=YFR045W-exon1;Parent=YFR045W
VI	S-MART	exon	242082	242999	.	+	.	ID=YFR045W-exon2;Name=YFR045W-exon2;Parent=YFR045W
Mito	S-MART	transcript	11667	11957	.	+	.	seqedit=false;p_id=P4559;gene_id=Q0032;tss_id=TSS1174;nbOverlaps=0;ID=Q0032;Name=Q0032
VI	S-MART	transcript	76014	76115	.	-	.	seqedit=false;p_id=P914;gene_id=YFL031C-A;tss_id=TSS4921;nbOverlaps=0;ID=YFL031C-A;Name=YFL031C-A
Mito	S-MART	transcript	13818	26701	.	+	.	seqedit=false;p_id=P1499;gene_id=Q0045;tss_id=TSS6555;nbOverlaps=0;ID=Q0045;Name=COX1
Mito	S-MART	exon	13818	13986	.	+	.	ID=Q0045-exon1;Name=COX1-exon1;Parent=Q0045
Mito	S-MART	exon	16435	16470	.	+	.	ID=Q0045-exon2;Name=COX1-exon2;Parent=Q0045
Mito	S-MART	exon	18954	18991	.	+	.	ID=Q0045-exon3;Name=COX1-exon3;Parent=Q0045
Mito	S-MART	exon	20508	20984	.	+	.	ID=Q0045-exon4;Name=COX1-exon4;Parent=Q0045
Mito	S-MART	exon	21995	22246	.	+	.	ID=Q0045-exon5;Name=COX1-exon5;Parent=Q0045
Mito	S-MART	exon	23612	23746	.	+	.	ID=Q0045-exon6;Name=COX1-exon6;Parent=Q0045
Mito	S-MART	exon	25318	25342	.	+	.	ID=Q0045-exon7;Name=COX1-exon7;Parent=Q0045
Mito	S-MART	exon	26229	26701	.	+	.	ID=Q0045-exon8;Name=COX1-exon8;Parent=Q0045
VI	S-MART	transcript	244279	245166	.	-	.	seqedit=false;p_id=P3705;gene_id=YFR047C;tss_id=TSS3512;nbOverlaps=0;ID=YFR047C;Name=BNA6
VI	S-MART	transcript	246146	248134	.	+	.	seqedit=false;p_id=P3518;gene_id=YFR048W;tss_id=TSS5295;nbOverlaps=0;ID=YFR048W;Name=RMD8
VI	S-MART	transcript	248523	248894	.	+	.	seqedit=false;p_id=P1013;gene_id=YFR049W;tss_id=TSS206;nbOverlaps=0;ID=YFR049W;Name=YMR31
VI	S-MART	transcript	249066	249866	.	-	.	seqedit=false;p_id=P2579;gene_id=YFR050C;tss_id=TSS575;nbOverlaps=0;ID=YFR050C;Name=PRE4
VI	S-MART	transcript	250163	251803	.	-	.	seqedit=false;p_id=P4777;gene_id=YFR051C;tss_id=TSS104;nbOverlaps=0;ID=YFR051C;Name=RET2
VI	S-MART	transcript	253429	253734	.	-	.	seqedit=false;p_id=P2793;gene_id=YFR052C-A;tss_id=TSS5952;nbOverlaps=0;ID=YFR052C-A;Name=YFR052C-A
VI	S-MART	transcript	252505	253329	.	+	.	seqedit=false;p_id=P4129;gene_id=YFR052W;tss_id=TSS3694;nbOverlaps=0;ID=YFR052W;Name=RPN12
VI	S-MART	transcript	253592	255049	.	-	.	seqedit=false;p_id=P720;gene_id=YFR053C;tss_id=TSS5564;nbOverlaps=0;ID=YFR053C;Name=HXK1
VI	S-MART	transcript	264204	265226	.	+	.	seqedit=false;p_id=P478;gene_id=YFR055W;tss_id=TSS1754;nbOverlaps=0;ID=YFR055W;Name=IRC7
VI	S-MART	transcript	258855	259433	.	-	.	seqedit=false;p_id=P2798;gene_id=YFR054C;tss_id=TSS861;nbOverlaps=0;ID=YFR054C;Name=YFR054C
VII	S-MART	transcript	495453	496502	.	-	.	seqedit=false;p_id=P3847;gene_id=YGL001C;tss_id=TSS6511;nbOverlaps=0;ID=YGL001C;Name=ERG26
VI	S-MART	transcript	263957	264325	.	-	.	seqedit=false;p_id=P1555;gene_id=YFR056C;tss_id=TSS2642;nbOverlaps=0;ID=YFR056C;Name=YFR056C
VI	S-MART	transcript	269061	269516	.	+	.	seqedit=false;p_id=P5016;gene_id=YFR057W;tss_id=TSS2759;nbOverlaps=0;ID=YFR057W;Name=YFR057W
VII	S-MART	transcript	494517	495167	.	+	.	seqedit=false;p_id=P4809;gene_id=YGL002W;tss_id=TSS6609;nbOverlaps=0;ID=YGL002W;Name=ERP6
VII	S-MART	transcript	492474	494174	.	-	.	seqedit=false;p_id=P2556;gene_id=YGL003C;tss_id=TSS5537;nbOverlaps=0;ID=YGL003C;Name=CDH1
VII	S-MART	transcript	490703	491956	.	-	.	seqedit=false;p_id=P1386;gene_id=YGL004C;tss_id=TSS4163;nbOverlaps=0;ID=YGL004C;Name=RPN14
II	S-MART	transcript	2907	5009	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:11690:21395#0--HWUSI-EAS1656_0009_FC:3:32:2798:6722#0--HWUSI-EAS1656_0009;p_id=P1566;gene_id=YBL111C;tss_id=TSS4034;nbOverlaps=239;ID=YBL111C;Name=YBL111C
II	S-MART	exon	2907	4116	.	-	.	ID=YBL111C-exon1;Name=YBL111C-exon1;Parent=YBL111C
II	S-MART	exon	4216	5009	.	-	.	ID=YBL111C-exon2;Name=YBL111C-exon2;Parent=YBL111C
VII	S-MART	transcript	489708	490547	.	-	.	seqedit=false;p_id=P6159;gene_id=YGL005C;tss_id=TSS2539;nbOverlaps=0;ID=YGL005C;Name=COG7
VII	S-MART	transcript	485921	489442	.	+	.	seqedit=false;p_id=P1782;gene_id=YGL006W;tss_id=TSS2085;nbOverlaps=0;ID=YGL006W;Name=PMC1
VII	S-MART	transcript	485423	485533	.	+	.	seqedit=false;p_id=P6031;gene_id=YGL006W-A;tss_id=TSS4481;nbOverlaps=0;ID=YGL006W-A;Name=YGL006W-A
VII	S-MART	transcript	482941	483027	.	-	.	seqedit=false;p_id=P3017;gene_id=YGL007C-A;tss_id=TSS1986;nbOverlaps=0;ID=YGL007C-A;Name=YGL007C-A
VII	S-MART	transcript	483260	483637	.	+	.	seqedit=false;p_id=P5388;gene_id=YGL007W;tss_id=TSS5319;nbOverlaps=0;ID=YGL007W;Name=BRP1
VII	S-MART	transcript	479910	482666	.	-	.	seqedit=false;p_id=P4114;gene_id=YGL008C;tss_id=TSS425;nbOverlaps=0;ID=YGL008C;Name=PMA1
VII	S-MART	transcript	476313	478652	.	-	.	seqedit=false;p_id=P451;gene_id=YGL009C;tss_id=TSS6219;nbOverlaps=0;ID=YGL009C;Name=LEU1
X	S-MART	transcript	358300	359676	.	-	.	seqedit=false;p_id=P3239;gene_id=YJL044C;tss_id=TSS6365;nbOverlaps=0;ID=YJL044C;Name=GYP6
VII	S-MART	transcript	474489	475247	.	-	.	seqedit=false;p_id=P4423;gene_id=YGL011C;tss_id=TSS2259;nbOverlaps=0;ID=YGL011C;Name=SCL1
VII	S-MART	transcript	475545	476069	.	+	.	seqedit=false;p_id=P5290;gene_id=YGL010W;tss_id=TSS5981;nbOverlaps=0;ID=YGL010W;Name=YGL010W
VII	S-MART	transcript	472855	474276	.	+	.	seqedit=false;p_id=P6629;gene_id=YGL012W;tss_id=TSS2327;nbOverlaps=0;ID=YGL012W;Name=ERG4
VII	S-MART	transcript	469092	472298	.	-	.	seqedit=false;p_id=P4984;gene_id=YGL013C;tss_id=TSS919;nbOverlaps=0;ID=YGL013C;Name=PDR1
Mito	S-MART	transcript	27666	27812	.	+	.	seqedit=false;p_id=P3707;gene_id=Q0080;tss_id=TSS4840;nbOverlaps=0;ID=Q0080;Name=ATP8
Mito	S-MART	transcript	24156	25255	.	+	.	seqedit=false;p_id=P3848;gene_id=Q0075;tss_id=TSS4464;nbOverlaps=0;ID=Q0075;Name=AI5_BETA
Mito	S-MART	exon	24156	24870	.	+	.	ID=Q0075-exon1;Name=AI5_BETA-exon1;Parent=Q0075
Mito	S-MART	exon	24906	25255	.	+	.	ID=Q0075-exon2;Name=AI5_BETA-exon2;Parent=Q0075
VII	S-MART	transcript	461666	464911	.	+	.	seqedit=false;p_id=P3465;gene_id=YGL016W;tss_id=TSS5054;nbOverlaps=0;ID=YGL016W;Name=KAP122
VII	S-MART	transcript	465043	465435	.	-	.	seqedit=false;p_id=P3763;gene_id=YGL015C;tss_id=TSS2865;nbOverlaps=0;ID=YGL015C;Name=YGL015C
Mito	S-MART	transcript	28487	29266	.	+	.	seqedit=false;p_id=P1311;gene_id=Q0085;tss_id=TSS5394;nbOverlaps=0;ID=Q0085;Name=ATP6
VIII	S-MART	transcript	132047	132922	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:7262:9829#0--HWUSI-EAS1656_0009_FC:3:84:3458:7022#0--HWUSI-EAS1656_0009_F;p_id=P4755;gene_id=YHR014W;tss_id=TSS4509;nbOverlaps=22;ID=YHR014W;Name=SPO13
Mito	S-MART	transcript	30874	31014	.	+	.	seqedit=false;p_id=P2778;gene_id=Q0092;tss_id=TSS265;nbOverlaps=0;ID=Q0092;Name=Q0092
VII	S-MART	transcript	458156	458992	.	+	.	seqedit=false;p_id=P5311;gene_id=YGL019W;tss_id=TSS6185;nbOverlaps=0;ID=YGL019W;Name=CKB1
VII	S-MART	transcript	457163	457870	.	-	.	seqedit=false;p_id=P4808;gene_id=YGL020C;tss_id=TSS5509;nbOverlaps=0;ID=YGL020C;Name=GET1
XVI	S-MART	transcript	75702	75989	.	+	.	seqedit=false;p_id=P3058;gene_id=YPL250W-A;tss_id=TSS5577;nbOverlaps=0;ID=YPL250W-A;Name=YPL250W-A
VII	S-MART	transcript	454785	457067	.	+	.	seqedit=false;p_id=P3251;gene_id=YGL021W;tss_id=TSS830;nbOverlaps=0;ID=YGL021W;Name=ALK1
VII	S-MART	transcript	452404	454560	.	+	.	seqedit=false;p_id=P5857;gene_id=YGL022W;tss_id=TSS6653;nbOverlaps=0;ID=YGL022W;Name=STT3
VII	S-MART	transcript	450197	452104	.	-	.	seqedit=false;p_id=P6603;gene_id=YGL023C;tss_id=TSS1752;nbOverlaps=0;ID=YGL023C;Name=PIB2
VII	S-MART	transcript	448764	449957	.	-	.	seqedit=false;p_id=P5036;gene_id=YGL025C;tss_id=TSS2134;nbOverlaps=0;ID=YGL025C;Name=PGD1
VII	S-MART	transcript	449788	450123	.	+	.	seqedit=false;p_id=P248;gene_id=YGL024W;tss_id=TSS5294;nbOverlaps=0;ID=YGL024W;Name=YGL024W
Mito	S-MART	transcript	36540	38579	.	+	.	seqedit=false;p_id=P5090;gene_id=Q0110;tss_id=TSS5491;nbOverlaps=0;ID=Q0110;Name=BI2
Mito	S-MART	exon	36540	36954	.	+	.	ID=Q0110-exon1;Name=BI2-exon1;Parent=Q0110
Mito	S-MART	exon	37723	38579	.	+	.	ID=Q0110-exon2;Name=BI2-exon2;Parent=Q0110
VII	S-MART	transcript	443642	446143	.	-	.	seqedit=false;p_id=P2236;gene_id=YGL027C;tss_id=TSS6763;nbOverlaps=0;ID=YGL027C;Name=CWH41
VII	S-MART	transcript	441281	442909	.	-	.	seqedit=false;p_id=P1605;gene_id=YGL028C;tss_id=TSS5125;nbOverlaps=0;ID=YGL028C;Name=SCW11
Mito	S-MART	transcript	36540	40265	.	+	.	seqedit=false;p_id=P4085;gene_id=Q0115;tss_id=TSS5491;nbOverlaps=0;ID=Q0115;Name=BI3
Mito	S-MART	exon	36540	36954	.	+	.	ID=Q0115-exon1;Name=BI3-exon1;Parent=Q0115
Mito	S-MART	exon	37723	37736	.	+	.	ID=Q0115-exon2;Name=BI3-exon2;Parent=Q0115
Mito	S-MART	exon	39141	40265	.	+	.	ID=Q0115-exon3;Name=BI3-exon3;Parent=Q0115
VII	S-MART	transcript	439091	439638	.	+	.	seqedit=false;p_id=P2838;gene_id=YGL030W;tss_id=TSS6195;nbOverlaps=0;ID=YGL030W;Name=RPL30
VII	S-MART	exon	439091	439093	.	+	.	ID=YGL030W-exon1;Name=RPL30-exon1;Parent=YGL030W
VII	S-MART	exon	439324	439638	.	+	.	ID=YGL030W-exon2;Name=RPL30-exon2;Parent=YGL030W
XIV	S-MART	transcript	678799	680454	.	+	.	seqedit=false;p_id=P5379;gene_id=YNR030W;tss_id=TSS4527;nbOverlaps=0;ID=YNR030W;Name=ALG12
XIV	S-MART	transcript	677199	678488	.	-	.	seqedit=false;p_id=P824;gene_id=YNR029C;tss_id=TSS5628;nbOverlaps=0;ID=YNR029C;Name=YNR029C
VII	S-MART	transcript	437467	437934	.	-	.	seqedit=false;p_id=P2429;gene_id=YGL031C;tss_id=TSS4454;nbOverlaps=0;ID=YGL031C;Name=RPL24A
VII	S-MART	transcript	436570	436833	.	-	.	seqedit=false;p_id=P1284;gene_id=YGL032C;tss_id=TSS1780;nbOverlaps=0;ID=YGL032C;Name=AGA2
VII	S-MART	transcript	435625	436351	.	+	.	seqedit=false;p_id=P3967;gene_id=YGL033W;tss_id=TSS3783;nbOverlaps=0;ID=YGL033W;Name=HOP2
VII	S-MART	exon	435625	435679	.	+	.	ID=YGL033W-exon1;Name=HOP2-exon1;Parent=YGL033W
VII	S-MART	exon	435750	436351	.	+	.	ID=YGL033W-exon2;Name=HOP2-exon2;Parent=YGL033W
XIV	S-MART	transcript	687635	689998	.	+	.	seqedit=false;p_id=P1576;gene_id=YNR033W;tss_id=TSS123;nbOverlaps=0;ID=YNR033W;Name=ABZ1
XIV	S-MART	transcript	690321	691286	.	+	.	seqedit=false;p_id=P6261;gene_id=YNR034W;tss_id=TSS5338;nbOverlaps=0;ID=YNR034W;Name=SOL1
VII	S-MART	transcript	431548	433062	.	-	.	seqedit=false;p_id=P6639;gene_id=YGL035C;tss_id=TSS3570;nbOverlaps=0;ID=YGL035C;Name=MIG1
X	S-MART	transcript	360130	360903	.	+	.	seqedit=false;p_id=P1857;gene_id=YJL043W;tss_id=TSS790;nbOverlaps=0;ID=YJL043W;Name=YJL043W
VII	S-MART	transcript	433214	433579	.	-	.	seqedit=false;p_id=P465;gene_id=YGL034C;tss_id=TSS552;nbOverlaps=0;ID=YGL034C;Name=YGL034C
VII	S-MART	transcript	427297	427947	.	-	.	seqedit=false;p_id=P4013;gene_id=YGL037C;tss_id=TSS5533;nbOverlaps=0;ID=YGL037C;Name=PNC1
VII	S-MART	transcript	428601	431330	.	+	.	seqedit=false;p_id=P5816;gene_id=YGL036W;tss_id=TSS866;nbOverlaps=0;ID=YGL036W;Name=YGL036W
VII	S-MART	transcript	425362	426804	.	-	.	seqedit=false;p_id=P2621;gene_id=YGL038C;tss_id=TSS141;nbOverlaps=0;ID=YGL038C;Name=OCH1
XV	S-MART	transcript	288192	288280	.	+	.	seqedit=false;gene_id=tY(GUA)O;tss_id=TSS5339;nbOverlaps=0;ID=tY(GUA)O;Name=SUP3
XV	S-MART	exon	288192	288230	.	+	.	ID=tY(GUA)O-exon1;Name=SUP3-exon1;Parent=tY(GUA)O
XV	S-MART	exon	288245	288280	.	+	.	ID=tY(GUA)O-exon2;Name=SUP3-exon2;Parent=tY(GUA)O
VIII	S-MART	transcript	134554	136533	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:14:15757:3565#0--HWUSI-EAS1656_0009_FC:3:80:17487:17530#0--HWUSI-EAS1656_000;p_id=P181;gene_id=YHR015W;tss_id=TSS3421;nbOverlaps=6;ID=YHR015W;Name=MIP6
Mito	S-MART	transcript	70824	70907	.	+	.	seqedit=false;gene_id=tY(GUA)Q;tss_id=TSS1346;nbOverlaps=0;ID=tY(GUA)Q;Name=tY(GUA)Q
IV	S-MART	transcript	1462358	1465786	.	-	.	seqedit=false;p_id=P2246;gene_id=YDR507C;tss_id=TSS4593;nbOverlaps=0;ID=YDR507C;Name=GIN4
XIV	S-MART	transcript	371	6098	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0;p_id=P3503;gene_id=YNL339C;tss_id=TSS3737;nbOverlaps=561;ID=YNL339C;Name=YRF1-6
XIV	S-MART	exon	371	5931	.	-	.	ID=YNL339C-exon1;Name=YRF1-6-exon1;Parent=YNL339C
XIV	S-MART	exon	6080	6098	.	-	.	ID=YNL339C-exon2;Name=YRF1-6-exon2;Parent=YNL339C
X	S-MART	transcript	352386	353615	.	+	.	seqedit=false;p_id=P5047;gene_id=YJL046W;tss_id=TSS4642;nbOverlaps=0;ID=YJL046W;Name=AIM22
IV	S-MART	transcript	1459728	1461554	.	-	.	seqedit=false;p_id=P900;gene_id=YDR506C;tss_id=TSS4393;nbOverlaps=0;ID=YDR506C;Name=YDR506C
XIV	S-MART	transcript	457704	461990	.	+	.	seqedit=false;p_id=P2260;gene_id=YNL088W;tss_id=TSS959;nbOverlaps=0;ID=YNL088W;Name=TOP2
XI	S-MART	transcript	208247	210130	.	+	.	seqedit=false;p_id=P5914;gene_id=YKL125W;tss_id=TSS6729;nbOverlaps=0;ID=YKL125W;Name=RRN3
X	S-MART	transcript	356024	357928	.	+	.	seqedit=false;p_id=P680;gene_id=YJL045W;tss_id=TSS3661;nbOverlaps=0;ID=YJL045W;Name=YJL045W
IV	S-MART	transcript	1466453	1468444	.	-	.	seqedit=false;p_id=P3715;gene_id=YDR508C;tss_id=TSS3077;nbOverlaps=0;ID=YDR508C;Name=GNP1
XIV	S-MART	transcript	280432	281505	.	+	.	seqedit=false;p_id=P5602;gene_id=YNL191W;tss_id=TSS570;nbOverlaps=0;ID=YNL191W;Name=DUG3
XII	S-MART	transcript	680866	681216	.	-	.	seqedit=false;p_id=P397;gene_id=YLR269C;tss_id=TSS2945;nbOverlaps=0;ID=YLR269C;Name=YLR269C
X	S-MART	transcript	305221	305862	.	-	.	seqedit=false;p_id=P5381;gene_id=YJL072C;tss_id=TSS4558;nbOverlaps=0;ID=YJL072C;Name=PSF2
XIII	S-MART	transcript	611740	615975	.	+	.	seqedit=false;p_id=P660;gene_id=YMR176W;tss_id=TSS1643;nbOverlaps=0;ID=YMR176W;Name=ECM5
X	S-MART	transcript	303181	305118	.	+	.	seqedit=false;p_id=P2145;gene_id=YJL073W;tss_id=TSS3626;nbOverlaps=0;ID=YJL073W;Name=JEM1
XI	S-MART	transcript	205707	207749	.	+	.	seqedit=false;p_id=P740;gene_id=YKL126W;tss_id=TSS5204;nbOverlaps=0;ID=YKL126W;Name=YPK1
X	S-MART	transcript	349580	352108	.	-	.	seqedit=false;p_id=P4817;gene_id=YJL047C;tss_id=TSS5416;nbOverlaps=0;ID=YJL047C;Name=RTT101
X	S-MART	transcript	299157	302849	.	-	.	seqedit=false;p_id=P910;gene_id=YJL074C;tss_id=TSS4475;nbOverlaps=0;ID=YJL074C;Name=SMC3
VI	S-MART	transcript	74872	75192	.	+	.	seqedit=false;p_id=P901;gene_id=YFL032W;tss_id=TSS3530;nbOverlaps=0;ID=YFL032W;Name=YFL032W
IV	S-MART	transcript	1469695	1469811	.	-	.	seqedit=false;p_id=P1637;gene_id=YDR510C-A;tss_id=TSS6991;nbOverlaps=0;ID=YDR510C-A;Name=YDR510C-A
XII	S-MART	transcript	691555	693882	.	+	.	seqedit=false;p_id=P55;gene_id=YLR274W;tss_id=TSS4945;nbOverlaps=0;ID=YLR274W;Name=MCM5
XVI	S-MART	transcript	39121	40077	.	+	.	seqedit=false;p_id=P5798;gene_id=YPL266W;tss_id=TSS459;nbOverlaps=0;ID=YPL266W;Name=DIM1
XII	S-MART	transcript	694378	694800	.	+	.	seqedit=false;p_id=P6212;gene_id=YLR275W;tss_id=TSS86;nbOverlaps=0;ID=YLR275W;Name=SMD2
XII	S-MART	exon	694378	694382	.	+	.	ID=YLR275W-exon1;Name=SMD2-exon1;Parent=YLR275W
XII	S-MART	exon	694473	694800	.	+	.	ID=YLR275W-exon2;Name=SMD2-exon2;Parent=YLR275W
X	S-MART	transcript	294666	295061	.	-	.	seqedit=false;p_id=P936;gene_id=YJL077C;tss_id=TSS3554;nbOverlaps=0;ID=YJL077C;Name=ICS3
II	S-MART	transcript	238941	241283	.	-	.	seqedit=false;p_id=P2442;gene_id=YBR001C;tss_id=TSS5035;nbOverlaps=0;ID=YBR001C;Name=NTH2
X	S-MART	transcript	294799	294885	.	+	.	seqedit=false;p_id=P5973;gene_id=YJL077W-A;tss_id=TSS1138;nbOverlaps=0;ID=YJL077W-A;Name=YJL077W-A
XI	S-MART	transcript	203541	205253	.	+	.	seqedit=false;p_id=P3926;gene_id=YKL127W;tss_id=TSS4539;nbOverlaps=0;ID=YKL127W;Name=PGM1
X	S-MART	transcript	349044	349178	.	-	.	seqedit=false;p_id=P5155;gene_id=YJL047C-A;tss_id=TSS1171;nbOverlaps=0;ID=YJL047C-A;Name=YJL047C-A
XIV	S-MART	transcript	516403	516735	.	+	.	seqedit=false;p_id=P1269;gene_id=YNL057W;tss_id=TSS5170;nbOverlaps=0;ID=YNL057W;Name=YNL057W
XII	S-MART	transcript	695046	696830	.	-	.	seqedit=false;p_id=P6260;gene_id=YLR276C;tss_id=TSS3257;nbOverlaps=0;ID=YLR276C;Name=DBP9
VI	S-MART	transcript	64243	64932	.	-	.	seqedit=false;p_id=P4584;gene_id=YFL034C-A;tss_id=TSS1277;nbOverlaps=0;ID=YFL034C-A;Name=RPL22B
VI	S-MART	exon	64243	64599	.	-	.	ID=YFL034C-A-exon1;Name=RPL22B-exon1;Parent=YFL034C-A
VI	S-MART	exon	64921	64932	.	-	.	ID=YFL034C-A-exon2;Name=RPL22B-exon2;Parent=YFL034C-A
IV	S-MART	transcript	1468226	1468573	.	+	.	seqedit=false;p_id=P2519;gene_id=YDR509W;tss_id=TSS5691;nbOverlaps=0;ID=YDR509W;Name=YDR509W
XII	S-MART	transcript	697156	699495	.	-	.	seqedit=false;p_id=P4806;gene_id=YLR277C;tss_id=TSS1529;nbOverlaps=0;ID=YLR277C;Name=YSH1
IV	S-MART	transcript	1017001	1017318	.	-	.	seqedit=false;p_id=P3495;gene_id=YDR278C;tss_id=TSS732;nbOverlaps=0;ID=YDR278C;Name=YDR278C
IV	S-MART	transcript	1020747	1021664	.	+	.	seqedit=false;p_id=P2571;gene_id=YDR280W;tss_id=TSS3425;nbOverlaps=0;ID=YDR280W;Name=RRP45
IV	S-MART	transcript	1022007	1022321	.	-	.	seqedit=false;p_id=P5042;gene_id=YDR281C;tss_id=TSS203;nbOverlaps=0;ID=YDR281C;Name=PHM6
II	S-MART	transcript	356324	356566	.	-	.	seqedit=false;p_id=P6553;gene_id=YBR058C-A;tss_id=TSS757;nbOverlaps=0;ID=YBR058C-A;Name=TSC3
IV	S-MART	transcript	1025070	1030049	.	-	.	seqedit=false;p_id=P2249;gene_id=YDR283C;tss_id=TSS3322;nbOverlaps=0;ID=YDR283C;Name=GCN2
IV	S-MART	transcript	1023511	1024755	.	-	.	seqedit=false;p_id=P3752;gene_id=YDR282C;tss_id=TSS2317;nbOverlaps=0;ID=YDR282C;Name=YDR282C
IV	S-MART	transcript	1030550	1031419	.	-	.	seqedit=false;p_id=P6484;gene_id=YDR284C;tss_id=TSS2407;nbOverlaps=0;ID=YDR284C;Name=DPP1
IV	S-MART	transcript	1032436	1035063	.	+	.	seqedit=false;p_id=P6493;gene_id=YDR285W;tss_id=TSS3523;nbOverlaps=0;ID=YDR285W;Name=ZIP1
IV	S-MART	transcript	1035995	1036873	.	+	.	seqedit=false;p_id=P380;gene_id=YDR287W;tss_id=TSS1827;nbOverlaps=0;ID=YDR287W;Name=INM2
IV	S-MART	transcript	1035231	1035575	.	-	.	seqedit=false;p_id=P1834;gene_id=YDR286C;tss_id=TSS3671;nbOverlaps=0;ID=YDR286C;Name=YDR286C
II	S-MART	transcript	356861	360187	.	-	.	seqedit=false;p_id=P5821;gene_id=YBR059C;tss_id=TSS2557;nbOverlaps=0;ID=YBR059C;Name=AKL1
IV	S-MART	transcript	1037195	1038106	.	+	.	seqedit=false;p_id=P3632;gene_id=YDR288W;tss_id=TSS4490;nbOverlaps=0;ID=YDR288W;Name=NSE3
IV	S-MART	transcript	1038280	1039509	.	-	.	seqedit=false;p_id=P4386;gene_id=YDR289C;tss_id=TSS1377;nbOverlaps=0;ID=YDR289C;Name=RTT103
IV	S-MART	transcript	1039728	1042961	.	+	.	seqedit=false;p_id=P6513;gene_id=YDR291W;tss_id=TSS619;nbOverlaps=0;ID=YDR291W;Name=HRQ1
IV	S-MART	transcript	1039370	1039699	.	+	.	seqedit=false;p_id=P202;gene_id=YDR290W;tss_id=TSS400;nbOverlaps=0;ID=YDR290W;Name=YDR290W
IV	S-MART	transcript	1043146	1045011	.	-	.	seqedit=false;p_id=P4195;gene_id=YDR292C;tss_id=TSS5209;nbOverlaps=0;ID=YDR292C;Name=SRP101
IV	S-MART	transcript	1045640	1049392	.	-	.	seqedit=false;p_id=P604;gene_id=YDR293C;tss_id=TSS6252;nbOverlaps=0;ID=YDR293C;Name=SSD1
XII	S-MART	transcript	704309	704698	.	+	.	seqedit=false;p_id=P1972;gene_id=YLR279W;tss_id=TSS3822;nbOverlaps=0;ID=YLR279W;Name=YLR279W
IV	S-MART	transcript	1050459	1052228	.	-	.	seqedit=false;p_id=P6091;gene_id=YDR294C;tss_id=TSS5156;nbOverlaps=0;ID=YDR294C;Name=DPL1
XI	S-MART	transcript	200884	201771	.	-	.	seqedit=false;p_id=P1974;gene_id=YKL128C;tss_id=TSS2795;nbOverlaps=0;ID=YKL128C;Name=PMU1
IV	S-MART	transcript	1052623	1054647	.	-	.	seqedit=false;p_id=P5294;gene_id=YDR295C;tss_id=TSS3701;nbOverlaps=0;ID=YDR295C;Name=HDA2
X	S-MART	transcript	347447	348637	.	-	.	seqedit=false;p_id=P1183;gene_id=YJL048C;tss_id=TSS5881;nbOverlaps=0;ID=YJL048C;Name=UBX6
IV	S-MART	transcript	1055212	1055892	.	+	.	seqedit=false;p_id=P3168;gene_id=YDR296W;tss_id=TSS3742;nbOverlaps=0;ID=YDR296W;Name=MHR1
IV	S-MART	transcript	1056551	1057600	.	+	.	seqedit=false;p_id=P6533;gene_id=YDR297W;tss_id=TSS5864;nbOverlaps=0;ID=YDR297W;Name=SUR2
IV	S-MART	transcript	1058176	1058814	.	-	.	seqedit=false;p_id=P1841;gene_id=YDR298C;tss_id=TSS5260;nbOverlaps=0;ID=YDR298C;Name=ATP5
XVI	S-MART	transcript	408010	408744	.	-	.	seqedit=false;p_id=P6518;gene_id=YPL078C;tss_id=TSS2961;nbOverlaps=0;ID=YPL078C;Name=ATP4
IV	S-MART	transcript	1059627	1061231	.	+	.	seqedit=false;p_id=P4880;gene_id=YDR299W;tss_id=TSS3254;nbOverlaps=0;ID=YDR299W;Name=BFR2
XII	S-MART	transcript	704483	704833	.	-	.	seqedit=false;p_id=P3214;gene_id=YLR280C;tss_id=TSS950;nbOverlaps=0;ID=YLR280C;Name=YLR280C
IV	S-MART	transcript	1061505	1062791	.	-	.	seqedit=false;p_id=P1078;gene_id=YDR300C;tss_id=TSS1829;nbOverlaps=0;ID=YDR300C;Name=PRO1
IV	S-MART	transcript	1063352	1067425	.	+	.	seqedit=false;p_id=P1679;gene_id=YDR301W;tss_id=TSS4195;nbOverlaps=0;ID=YDR301W;Name=CFT1
IV	S-MART	transcript	1067731	1068390	.	+	.	seqedit=false;p_id=P3276;gene_id=YDR302W;tss_id=TSS4262;nbOverlaps=0;ID=YDR302W;Name=GPI11
IV	S-MART	transcript	1068729	1071386	.	-	.	seqedit=false;p_id=P20;gene_id=YDR303C;tss_id=TSS6072;nbOverlaps=0;ID=YDR303C;Name=RSC3
IV	S-MART	transcript	1071880	1072557	.	-	.	seqedit=false;p_id=P3753;gene_id=YDR304C;tss_id=TSS4798;nbOverlaps=0;ID=YDR304C;Name=CPR5
IV	S-MART	transcript	1072746	1073488	.	-	.	seqedit=false;p_id=P3140;gene_id=YDR305C;tss_id=TSS3600;nbOverlaps=0;ID=YDR305C;Name=HNT2
IV	S-MART	exon	1072746	1073312	.	-	.	ID=YDR305C-exon1;Name=HNT2-exon1;Parent=YDR305C
IV	S-MART	exon	1073402	1073488	.	-	.	ID=YDR305C-exon2;Name=HNT2-exon2;Parent=YDR305C
XII	S-MART	transcript	704493	704960	.	-	.	seqedit=false;p_id=P4404;gene_id=YLR281C;tss_id=TSS5993;nbOverlaps=0;ID=YLR281C;Name=YLR281C
XV	S-MART	transcript	624729	626492	.	+	.	seqedit=false;p_id=P3139;gene_id=YOR154W;tss_id=TSS14;nbOverlaps=0;ID=YOR154W;Name=SLP1
XV	S-MART	transcript	626628	627980	.	-	.	seqedit=false;p_id=P2739;gene_id=YOR155C;tss_id=TSS5931;nbOverlaps=0;ID=YOR155C;Name=ISN1
IV	S-MART	transcript	1078027	1078449	.	-	.	seqedit=false;p_id=P841;gene_id=YDR308C;tss_id=TSS6652;nbOverlaps=0;ID=YDR308C;Name=SRB7
IV	S-MART	transcript	1073735	1075171	.	-	.	seqedit=false;p_id=P4462;gene_id=YDR306C;tss_id=TSS1928;nbOverlaps=0;ID=YDR306C;Name=YDR306C
IV	S-MART	transcript	1075865	1077853	.	+	.	seqedit=false;p_id=P4864;gene_id=YDR307W;tss_id=TSS2514;nbOverlaps=0;ID=YDR307W;Name=YDR307W
IV	S-MART	transcript	1079048	1080199	.	-	.	seqedit=false;p_id=P4290;gene_id=YDR309C;tss_id=TSS592;nbOverlaps=0;ID=YDR309C;Name=GIC2
II	S-MART	transcript	365976	366600	.	-	.	seqedit=false;p_id=P5154;gene_id=YBR062C;tss_id=TSS5095;nbOverlaps=0;ID=YBR062C;Name=YBR062C
II	S-MART	exon	365976	366502	.	-	.	ID=YBR062C-exon1;Name=YBR062C-exon1;Parent=YBR062C
II	S-MART	exon	366585	366600	.	-	.	ID=YBR062C-exon2;Name=YBR062C-exon2;Parent=YBR062C
IV	S-MART	transcript	1081128	1084316	.	-	.	seqedit=false;p_id=P2208;gene_id=YDR310C;tss_id=TSS4743;nbOverlaps=0;ID=YDR310C;Name=SUM1
IV	S-MART	transcript	1085065	1086993	.	+	.	seqedit=false;p_id=P3385;gene_id=YDR311W;tss_id=TSS5809;nbOverlaps=0;ID=YDR311W;Name=TFB1
IV	S-MART	transcript	1087581	1088942	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:2:3691:14933#0--HWUSI-EAS1656_0009_FC:3:12:9657:2748#0--HWUSI-EAS1656_0009_F;p_id=P1767;gene_id=YDR312W;tss_id=TSS6889;nbOverlaps=18;ID=YDR312W;Name=SSF2
IV	S-MART	transcript	1089219	1090079	.	-	.	seqedit=false;p_id=P879;gene_id=YDR313C;tss_id=TSS4183;nbOverlaps=0;ID=YDR313C;Name=PIB1
IV	S-MART	transcript	1090433	1092511	.	-	.	seqedit=false;p_id=P3110;gene_id=YDR314C;tss_id=TSS3982;nbOverlaps=0;ID=YDR314C;Name=RAD34
IV	S-MART	transcript	1092741	1093586	.	-	.	seqedit=false;p_id=P662;gene_id=YDR315C;tss_id=TSS4103;nbOverlaps=0;ID=YDR315C;Name=IPK1
XII	S-MART	transcript	705186	706130	.	+	.	seqedit=false;p_id=P3401;gene_id=YLR283W;tss_id=TSS1539;nbOverlaps=0;ID=YLR283W;Name=YLR283W
IV	S-MART	transcript	1093763	1095178	.	+	.	seqedit=false;p_id=P3370;gene_id=YDR316W;tss_id=TSS4880;nbOverlaps=0;ID=YDR316W;Name=OMS1
IV	S-MART	transcript	1096064	1097386	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P5271;gene_id=YDR316W-A;tss_id=TSS1323;nbOverlaps=12;ID=YDR316W-A;Name=YDR316W-A
IV	S-MART	transcript	1096064	1101332	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:6147:6142#0--HWUSI-EAS1656_0009_FC:3:61:17569:13684#0--HWUSI-EAS1656_0009;p_id=P3521;gene_id=YDR316W-B;tss_id=TSS1323;nbOverlaps=324;ID=YDR316W-B;Name=YDR316W-B
IV	S-MART	exon	1096064	1097368	.	+	.	ID=YDR316W-B-exon1;Name=YDR316W-B-exon1;Parent=YDR316W-B
IV	S-MART	exon	1097370	1101332	.	+	.	ID=YDR316W-B-exon2;Name=YDR316W-B-exon2;Parent=YDR316W-B
XV	S-MART	transcript	647126	648502	.	-	.	seqedit=false;p_id=P1909;gene_id=YOR166C;tss_id=TSS4589;nbOverlaps=0;ID=YOR166C;Name=SWT1
XV	S-MART	transcript	648804	649007	.	-	.	seqedit=false;p_id=P3972;gene_id=YOR167C;tss_id=TSS1124;nbOverlaps=0;ID=YOR167C;Name=RPS28A
IV	S-MART	transcript	1102184	1103428	.	+	.	seqedit=false;p_id=P6121;gene_id=YDR317W;tss_id=TSS2305;nbOverlaps=0;ID=YDR317W;Name=HIM1
XII	S-MART	transcript	708168	708338	.	-	.	seqedit=false;p_id=P4440;gene_id=YLR285C-A;tss_id=TSS3693;nbOverlaps=0;ID=YLR285C-A;Name=YLR285C-A
IV	S-MART	transcript	1103758	1104947	.	+	.	seqedit=false;p_id=P6574;gene_id=YDR318W;tss_id=TSS2529;nbOverlaps=0;ID=YDR318W;Name=MCM21
IV	S-MART	exon	1103758	1103809	.	+	.	ID=YDR318W-exon1;Name=MCM21-exon1;Parent=YDR318W
IV	S-MART	exon	1103893	1104947	.	+	.	ID=YDR318W-exon2;Name=MCM21-exon2;Parent=YDR318W
XI	S-MART	transcript	196349	200167	.	-	.	seqedit=false;p_id=P2837;gene_id=YKL129C;tss_id=TSS1168;nbOverlaps=0;ID=YKL129C;Name=MYO3
XV	S-MART	transcript	651376	651840	.	-	.	seqedit=false;p_id=P4690;gene_id=YOR169C;tss_id=TSS5447;nbOverlaps=0;ID=YOR169C;Name=YOR169C
XV	S-MART	transcript	651858	652163	.	+	.	seqedit=false;p_id=P2071;gene_id=YOR170W;tss_id=TSS2693;nbOverlaps=0;ID=YOR170W;Name=YOR170W
IV	S-MART	transcript	1106095	1108101	.	-	.	seqedit=false;p_id=P4300;gene_id=YDR320C;tss_id=TSS4516;nbOverlaps=0;ID=YDR320C;Name=SWA2
IV	S-MART	transcript	1105003	1105827	.	-	.	seqedit=false;p_id=P1912;gene_id=YDR319C;tss_id=TSS6532;nbOverlaps=0;ID=YDR319C;Name=YDR319C
IV	S-MART	transcript	1108280	1108498	.	-	.	seqedit=false;p_id=P2357;gene_id=YDR320C-A;tss_id=TSS4986;nbOverlaps=0;ID=YDR320C-A;Name=DAD4
XII	S-MART	transcript	707360	708145	.	+	.	seqedit=false;p_id=P1938;gene_id=YLR285W;tss_id=TSS3595;nbOverlaps=0;ID=YLR285W;Name=NNT1
IV	S-MART	transcript	1108484	1108621	.	+	.	seqedit=false;p_id=P5617;gene_id=YDR320W-B;tss_id=TSS2602;nbOverlaps=0;ID=YDR320W-B;Name=YDR320W-B
IV	S-MART	transcript	1108702	1109847	.	+	.	seqedit=false;p_id=P810;gene_id=YDR321W;tss_id=TSS6442;nbOverlaps=0;ID=YDR321W;Name=ASP1
IV	S-MART	transcript	1112003	1112293	.	-	.	seqedit=false;p_id=P683;gene_id=YDR322C-A;tss_id=TSS2762;nbOverlaps=0;ID=YDR322C-A;Name=TIM11
IV	S-MART	transcript	1110589	1111692	.	+	.	seqedit=false;p_id=P2339;gene_id=YDR322W;tss_id=TSS4709;nbOverlaps=0;ID=YDR322W;Name=MRPL35
IV	S-MART	transcript	1112480	1114027	.	-	.	seqedit=false;p_id=P3865;gene_id=YDR323C;tss_id=TSS1831;nbOverlaps=0;ID=YDR323C;Name=PEP7
IV	S-MART	transcript	1114433	1116763	.	-	.	seqedit=false;p_id=P2185;gene_id=YDR324C;tss_id=TSS4421;nbOverlaps=0;ID=YDR324C;Name=UTP4
XII	S-MART	transcript	708448	710136	.	-	.	seqedit=false;p_id=P4223;gene_id=YLR286C;tss_id=TSS6971;nbOverlaps=0;ID=YLR286C;Name=CTS1
IV	S-MART	transcript	1117126	1120233	.	+	.	seqedit=false;p_id=P3105;gene_id=YDR325W;tss_id=TSS909;nbOverlaps=0;ID=YDR325W;Name=YCG1
IV	S-MART	transcript	1120609	1124925	.	-	.	seqedit=false;p_id=P4479;gene_id=YDR326C;tss_id=TSS2030;nbOverlaps=0;ID=YDR326C;Name=YSP2
IV	S-MART	transcript	1125434	1126018	.	-	.	seqedit=false;p_id=P4;gene_id=YDR328C;tss_id=TSS5589;nbOverlaps=0;ID=YDR328C;Name=SKP1
IV	S-MART	transcript	1125302	1125628	.	+	.	seqedit=false;p_id=P1202;gene_id=YDR327W;tss_id=TSS6937;nbOverlaps=0;ID=YDR327W;Name=YDR327W
IV	S-MART	transcript	1126270	1127595	.	-	.	seqedit=false;p_id=P827;gene_id=YDR329C;tss_id=TSS373;nbOverlaps=0;ID=YDR329C;Name=PEX3
IV	S-MART	transcript	1127872	1129374	.	+	.	seqedit=false;p_id=P6542;gene_id=YDR330W;tss_id=TSS2968;nbOverlaps=0;ID=YDR330W;Name=UBX5
XII	S-MART	transcript	708562	708696	.	+	.	seqedit=false;p_id=P5477;gene_id=YLR286W-A;tss_id=TSS4560;nbOverlaps=0;ID=YLR286W-A;Name=YLR286W-A
IX	S-MART	transcript	96522	96725	.	-	.	seqedit=false;p_id=P2301;gene_id=YIL134C-A;tss_id=TSS3560;nbOverlaps=0;ID=YIL134C-A;Name=YIL134C-A
IX	S-MART	transcript	97395	98330	.	+	.	seqedit=false;p_id=P3733;gene_id=YIL134W;tss_id=TSS4905;nbOverlaps=0;ID=YIL134W;Name=FLX1
IX	S-MART	transcript	95065	96375	.	-	.	seqedit=false;p_id=P1319;gene_id=YIL135C;tss_id=TSS3176;nbOverlaps=0;ID=YIL135C;Name=VHS2
X	S-MART	transcript	262757	265051	.	-	.	seqedit=false;p_id=P2409;gene_id=YJL090C;tss_id=TSS5010;nbOverlaps=0;ID=YJL090C;Name=DPB11
IX	S-MART	transcript	93619	94800	.	+	.	seqedit=false;p_id=P5073;gene_id=YIL136W;tss_id=TSS3936;nbOverlaps=0;ID=YIL136W;Name=OM45
IX	S-MART	transcript	89948	92788	.	-	.	seqedit=false;p_id=P2618;gene_id=YIL137C;tss_id=TSS848;nbOverlaps=0;ID=YIL137C;Name=TMA108
II	S-MART	transcript	105316	107406	.	-	.	seqedit=false;p_id=P4723;gene_id=YBL061C;tss_id=TSS6155;nbOverlaps=0;ID=YBL061C;Name=SKT5
IX	S-MART	transcript	89230	89715	.	-	.	seqedit=false;p_id=P5511;gene_id=YIL138C;tss_id=TSS5114;nbOverlaps=0;ID=YIL138C;Name=TPM2
IX	S-MART	transcript	87979	88716	.	-	.	seqedit=false;p_id=P1666;gene_id=YIL139C;tss_id=TSS6892;nbOverlaps=0;ID=YIL139C;Name=REV7
IX	S-MART	transcript	85366	87837	.	+	.	seqedit=false;p_id=P615;gene_id=YIL140W;tss_id=TSS6782;nbOverlaps=0;ID=YIL140W;Name=AXL2
IX	S-MART	transcript	83208	83540	.	-	.	seqedit=false;p_id=P6645;gene_id=YIL142C-A;tss_id=TSS6106;nbOverlaps=0;ID=YIL142C-A;Name=YIL142C-A
II	S-MART	transcript	373861	375690	.	-	.	seqedit=false;p_id=P816;gene_id=YBR068C;tss_id=TSS1243;nbOverlaps=0;ID=YBR068C;Name=BAP2
IX	S-MART	transcript	85053	85442	.	+	.	seqedit=false;p_id=P1797;gene_id=YIL141W;tss_id=TSS6862;nbOverlaps=0;ID=YIL141W;Name=YIL141W
IX	S-MART	transcript	83302	84885	.	+	.	seqedit=false;p_id=P114;gene_id=YIL142W;tss_id=TSS5180;nbOverlaps=0;ID=YIL142W;Name=CCT2
II	S-MART	transcript	101886	105221	.	+	.	seqedit=false;p_id=P6095;gene_id=YBL063W;tss_id=TSS92;nbOverlaps=0;ID=YBL063W;Name=KIP1
IX	S-MART	transcript	80510	83041	.	-	.	seqedit=false;p_id=P6463;gene_id=YIL143C;tss_id=TSS3225;nbOverlaps=0;ID=YIL143C;Name=SSL2
IX	S-MART	transcript	78074	80149	.	+	.	seqedit=false;p_id=P5029;gene_id=YIL144W;tss_id=TSS1195;nbOverlaps=0;ID=YIL144W;Name=TID3
IX	S-MART	transcript	76354	77283	.	-	.	seqedit=false;p_id=P5208;gene_id=YIL145C;tss_id=TSS3989;nbOverlaps=0;ID=YIL145C;Name=PAN6
IX	S-MART	transcript	74184	75773	.	-	.	seqedit=false;p_id=P1914;gene_id=YIL146C;tss_id=TSS5687;nbOverlaps=0;ID=YIL146C;Name=ATG32
II	S-MART	transcript	376574	378433	.	-	.	seqedit=false;p_id=P3089;gene_id=YBR069C;tss_id=TSS1673;nbOverlaps=0;ID=YBR069C;Name=TAT1
IX	S-MART	transcript	69791	73453	.	-	.	seqedit=false;p_id=P614;gene_id=YIL147C;tss_id=TSS6552;nbOverlaps=0;ID=YIL147C;Name=SLN1
IX	S-MART	transcript	68708	69528	.	+	.	seqedit=false;p_id=P3332;gene_id=YIL148W;tss_id=TSS7063;nbOverlaps=0;ID=YIL148W;Name=RPL40A
IX	S-MART	exon	68708	68715	.	+	.	ID=YIL148W-exon1;Name=RPL40A-exon1;Parent=YIL148W
IX	S-MART	exon	69150	69528	.	+	.	ID=YIL148W-exon2;Name=RPL40A-exon2;Parent=YIL148W
II	S-MART	transcript	105308	105688	.	+	.	seqedit=false;p_id=P2330;gene_id=YBL062W;tss_id=TSS1324;nbOverlaps=0;ID=YBL062W;Name=YBL062W
IX	S-MART	transcript	63028	68067	.	-	.	seqedit=false;p_id=P6510;gene_id=YIL149C;tss_id=TSS5938;nbOverlaps=0;ID=YIL149C;Name=MLP2
IX	S-MART	transcript	61013	62728	.	-	.	seqedit=false;p_id=P311;gene_id=YIL150C;tss_id=TSS4502;nbOverlaps=0;ID=YIL150C;Name=MCM10
X	S-MART	transcript	254737	256812	.	-	.	seqedit=false;p_id=P5563;gene_id=YJL093C;tss_id=TSS4823;nbOverlaps=0;ID=YJL093C;Name=TOK1
IX	S-MART	transcript	55198	56379	.	+	.	seqedit=false;p_id=P6592;gene_id=YIL153W;tss_id=TSS1939;nbOverlaps=0;ID=YIL153W;Name=RRD1
IX	S-MART	transcript	57338	60694	.	-	.	seqedit=false;p_id=P2811;gene_id=YIL151C;tss_id=TSS746;nbOverlaps=0;ID=YIL151C;Name=YIL151C
II	S-MART	transcript	100371	101156	.	-	.	seqedit=false;p_id=P3203;gene_id=YBL064C;tss_id=TSS2070;nbOverlaps=0;ID=YBL064C;Name=PRX1
IX	S-MART	transcript	56545	57252	.	+	.	seqedit=false;p_id=P709;gene_id=YIL152W;tss_id=TSS5336;nbOverlaps=0;ID=YIL152W;Name=YIL152W
IX	S-MART	transcript	53981	55021	.	-	.	seqedit=false;p_id=P1839;gene_id=YIL154C;tss_id=TSS6159;nbOverlaps=0;ID=YIL154C;Name=IMP2'
IX	S-MART	transcript	51759	53708	.	-	.	seqedit=false;p_id=P1980;gene_id=YIL155C;tss_id=TSS3136;nbOverlaps=0;ID=YIL155C;Name=GUT2
IX	S-MART	transcript	48091	51306	.	+	.	seqedit=false;p_id=P5322;gene_id=YIL156W;tss_id=TSS2587;nbOverlaps=0;ID=YIL156W;Name=UBP7
XVI	S-MART	transcript	360003	360305	.	-	.	seqedit=false;p_id=P5807;gene_id=YPL102C;tss_id=TSS4478;nbOverlaps=0;ID=YPL102C;Name=YPL102C
II	S-MART	transcript	382860	383021	.	-	.	seqedit=false;p_id=P363;gene_id=YBR072C-A;tss_id=TSS5328;nbOverlaps=0;ID=YBR072C-A;Name=YBR072C-A
IX	S-MART	transcript	47292	47693	.	+	.	seqedit=false;p_id=P5149;gene_id=YIL156W-A;tss_id=TSS5811;nbOverlaps=0;ID=YIL156W-A;Name=YIL156W-A
IX	S-MART	transcript	47690	47973	.	+	.	seqedit=false;p_id=P3692;gene_id=YIL156W-B;tss_id=TSS2358;nbOverlaps=0;ID=YIL156W-B;Name=YIL156W-B
IX	S-MART	exon	47690	47698	.	+	.	ID=YIL156W-B-exon1;Name=YIL156W-B-exon1;Parent=YIL156W-B
IX	S-MART	exon	47761	47973	.	+	.	ID=YIL156W-B-exon2;Name=YIL156W-B-exon2;Parent=YIL156W-B
II	S-MART	transcript	96669	100115	.	-	.	seqedit=false;p_id=P2482;gene_id=YBL066C;tss_id=TSS3859;nbOverlaps=0;ID=YBL066C;Name=SEF1
IX	S-MART	transcript	46949	47542	.	-	.	seqedit=false;p_id=P6007;gene_id=YIL157C;tss_id=TSS3282;nbOverlaps=0;ID=YIL157C;Name=COA1
IX	S-MART	transcript	46201	46815	.	+	.	seqedit=false;p_id=P773;gene_id=YIL158W;tss_id=TSS6266;nbOverlaps=0;ID=YIL158W;Name=AIM20
X	S-MART	transcript	247255	251691	.	+	.	seqedit=false;p_id=P4493;gene_id=YJL095W;tss_id=TSS6957;nbOverlaps=0;ID=YJL095W;Name=BCK1
IX	S-MART	transcript	41825	45952	.	+	.	seqedit=false;p_id=P4715;gene_id=YIL159W;tss_id=TSS3857;nbOverlaps=0;ID=YIL159W;Name=BNR1
IX	S-MART	transcript	40191	41444	.	-	.	seqedit=false;p_id=P412;gene_id=YIL160C;tss_id=TSS4398;nbOverlaps=0;ID=YIL160C;Name=POT1
II	S-MART	transcript	99963	100307	.	+	.	seqedit=false;p_id=P4988;gene_id=YBL065W;tss_id=TSS5526;nbOverlaps=0;ID=YBL065W;Name=YBL065W
IX	S-MART	transcript	37385	38983	.	+	.	seqedit=false;p_id=P5302;gene_id=YIL162W;tss_id=TSS2952;nbOverlaps=0;ID=YIL162W;Name=SUC2
IX	S-MART	transcript	39433	40140	.	+	.	seqedit=false;p_id=P726;gene_id=YIL161W;tss_id=TSS397;nbOverlaps=0;ID=YIL161W;Name=YIL161W
XIII	S-MART	transcript	616566	618098	.	+	.	seqedit=false;p_id=P2752;gene_id=YMR177W;tss_id=TSS6760;nbOverlaps=0;ID=YMR177W;Name=MMT1
IX	S-MART	transcript	34087	34686	.	-	.	seqedit=false;p_id=P1853;gene_id=YIL164C;tss_id=TSS3189;nbOverlaps=0;ID=YIL164C;Name=NIT1
IX	S-MART	transcript	36899	37252	.	-	.	seqedit=false;p_id=P1608;gene_id=YIL163C;tss_id=TSS6180;nbOverlaps=0;ID=YIL163C;Name=YIL163C
XII	S-MART	transcript	718317	719462	.	-	.	seqedit=false;p_id=P3722;gene_id=YLR291C;tss_id=TSS6864;nbOverlaps=0;ID=YLR291C;Name=GCD7
IX	S-MART	transcript	29416	30048	.	+	.	seqedit=false;gene_id=YIL167W;tss_id=TSS2744;nbOverlaps=0;ID=YIL167W;Name=SDL1
IX	S-MART	transcript	33718	34077	.	-	.	seqedit=false;p_id=P4200;gene_id=YIL165C;tss_id=TSS3008;nbOverlaps=0;ID=YIL165C;Name=YIL165C
II	S-MART	transcript	93639	95882	.	-	.	seqedit=false;p_id=P1394;gene_id=YBL067C;tss_id=TSS4354;nbOverlaps=0;ID=YBL067C;Name=UBP13
IX	S-MART	transcript	30938	32566	.	-	.	seqedit=false;p_id=P3960;gene_id=YIL166C;tss_id=TSS3957;nbOverlaps=0;ID=YIL166C;Name=YIL166C
IX	S-MART	transcript	19847	21220	.	+	.	seqedit=false;gene_id=YIL170W;tss_id=TSS2185;nbOverlaps=0;ID=YIL170W;Name=HXT12
IX	S-MART	transcript	29032	29415	.	+	.	seqedit=false;gene_id=YIL168W;tss_id=TSS3002;nbOverlaps=0;ID=YIL168W;Name=YIL168W
IX	S-MART	transcript	23119	26106	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:5334:19648#0--HWUSI-EAS1656_0009_FC:3:72:11692:7484#0--HWUSI-EAS1656_000;p_id=P6519;gene_id=YIL169C;tss_id=TSS5852;nbOverlaps=4;ID=YIL169C;Name=YIL169C
II	S-MART	transcript	383112	385988	.	+	.	seqedit=false;p_id=P3813;gene_id=YBR073W;tss_id=TSS2136;nbOverlaps=0;ID=YBR073W;Name=RDH54
IX	S-MART	transcript	18260	18712	.	+	.	seqedit=false;p_id=P3866;gene_id=YIL171W-A;tss_id=TSS401;nbOverlaps=0;ID=YIL171W-A;Name=YIL171W-A
IX	S-MART	transcript	19515	19844	.	+	.	seqedit=false;gene_id=YIL171W;tss_id=TSS1160;nbOverlaps=0;ID=YIL171W;Name=YIL171W
II	S-MART	transcript	92414	93394	.	+	.	seqedit=false;p_id=P4898;gene_id=YBL068W;tss_id=TSS858;nbOverlaps=0;ID=YBL068W;Name=PRS4
IX	S-MART	transcript	16784	18553	.	-	.	seqedit=false;p_id=P5142;gene_id=YIL172C;tss_id=TSS5709;nbOverlaps=0;ID=YIL172C;Name=IMA3
IX	S-MART	transcript	11492	16141	.	+	.	seqedit=false;p_id=P1703;gene_id=YIL173W;tss_id=TSS4633;nbOverlaps=0;ID=YIL173W;Name=VTH1
IX	S-MART	transcript	8793	9155	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0;p_id=P6244;gene_id=YIL176C;tss_id=TSS2928;nbOverlaps=1;ID=YIL176C;Name=PAU14
IX	S-MART	transcript	9469	9696	.	+	.	seqedit=false;gene_id=YIL174W;tss_id=TSS1746;nbOverlaps=0;ID=YIL174W;Name=YIL174W
II	S-MART	transcript	391351	391617	.	-	.	seqedit=false;p_id=P4431;gene_id=YBR076C-A;tss_id=TSS147;nbOverlaps=0;ID=YBR076C-A;Name=YBR076C-A
IX	S-MART	transcript	9183	9500	.	+	.	seqedit=false;gene_id=YIL175W;tss_id=TSS2905;nbOverlaps=0;ID=YIL175W;Name=YIL175W
IX	S-MART	transcript	846	1328	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:25:16807:21280#0--HWUSI-EAS1656_0009;p_id=P1537;gene_id=YIL177W-A;tss_id=TSS4877;nbOverlaps=58;ID=YIL177W-A;Name=YIL177W-A
II	S-MART	transcript	91794	92030	.	+	.	seqedit=false;p_id=P2966;gene_id=YBL068W-A;tss_id=TSS2071;nbOverlaps=0;ID=YBL068W-A;Name=YBL068W-A
IX	S-MART	transcript	483	6147	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P3475;gene_id=YIL177C;tss_id=TSS1994;nbOverlaps=437;ID=YIL177C;Name=YIL177C
IX	S-MART	exon	483	4598	.	-	.	ID=YIL177C-exon1;Name=YIL177C-exon1;Parent=YIL177C
IX	S-MART	exon	4987	6147	.	-	.	ID=YIL177C-exon2;Name=YIL177C-exon2;Parent=YIL177C
IX	S-MART	transcript	356143	356895	.	-	.	seqedit=false;p_id=P339;gene_id=YIR001C;tss_id=TSS2619;nbOverlaps=0;ID=YIR001C;Name=SGN1
II	S-MART	transcript	386286	389216	.	+	.	seqedit=false;p_id=P1307;gene_id=YBR074W;tss_id=TSS5488;nbOverlaps=0;ID=YBR074W;Name=YBR074W
IX	S-MART	transcript	357415	360396	.	-	.	seqedit=false;p_id=P115;gene_id=YIR002C;tss_id=TSS6710;nbOverlaps=0;ID=YIR002C;Name=MPH1
IX	S-MART	transcript	360885	362924	.	+	.	seqedit=false;p_id=P6617;gene_id=YIR003W;tss_id=TSS5920;nbOverlaps=0;ID=YIR003W;Name=AIM21
II	S-MART	transcript	90741	92030	.	+	.	seqedit=false;p_id=P4709;gene_id=YBL069W;tss_id=TSS4966;nbOverlaps=0;ID=YBL069W;Name=AST1
IX	S-MART	transcript	363221	364519	.	+	.	seqedit=false;p_id=P2960;gene_id=YIR004W;tss_id=TSS4469;nbOverlaps=0;ID=YIR004W;Name=DJP1
IX	S-MART	transcript	364889	365335	.	+	.	seqedit=false;p_id=P2047;gene_id=YIR005W;tss_id=TSS797;nbOverlaps=0;ID=YIR005W;Name=IST3
X	S-MART	transcript	237263	239086	.	+	.	seqedit=false;p_id=P1000;gene_id=YJL100W;tss_id=TSS5343;nbOverlaps=0;ID=YJL100W;Name=LSB6
II	S-MART	transcript	89458	89556	.	-	.	seqedit=false;p_id=P272;gene_id=YBL071C-B;tss_id=TSS2525;nbOverlaps=0;ID=YBL071C-B;Name=YBL071C-B
XII	S-MART	transcript	721701	722030	.	-	.	seqedit=false;p_id=P2221;gene_id=YLR294C;tss_id=TSS1935;nbOverlaps=0;ID=YLR294C;Name=YLR294C
IX	S-MART	transcript	382628	383425	.	+	.	seqedit=false;p_id=P348;gene_id=YIR016W;tss_id=TSS2400;nbOverlaps=0;ID=YIR016W;Name=YIR016W
XIV	S-MART	transcript	515763	516713	.	-	.	seqedit=false;p_id=P1777;gene_id=YNL058C;tss_id=TSS1904;nbOverlaps=0;ID=YNL058C;Name=YNL058C
II	S-MART	transcript	393123	394742	.	+	.	seqedit=false;p_id=P5986;gene_id=YBR078W;tss_id=TSS6107;nbOverlaps=0;ID=YBR078W;Name=ECM33
II	S-MART	exon	393123	393180	.	+	.	ID=YBR078W-exon1;Name=ECM33-exon1;Parent=YBR078W
II	S-MART	exon	393511	394742	.	+	.	ID=YBR078W-exon2;Name=ECM33-exon2;Parent=YBR078W
IV	S-MART	transcript	1451353	1452918	.	+	.	seqedit=false;p_id=P2701;gene_id=YDR501W;tss_id=TSS5543;nbOverlaps=0;ID=YDR501W;Name=PLM2
XVI	S-MART	transcript	862577	862861	.	-	.	seqedit=false;p_id=P3100;gene_id=YPR160C-A;tss_id=TSS1003;nbOverlaps=0;ID=YPR160C-A;Name=YPR160C-A
X	S-MART	transcript	229025	230881	.	-	.	seqedit=false;p_id=P4826;gene_id=YJL103C;tss_id=TSS4726;nbOverlaps=0;ID=YJL103C;Name=GSM1
IX	S-MART	transcript	385564	385701	.	-	.	seqedit=false;p_id=P6342;gene_id=YIR018C-A;tss_id=TSS1429;nbOverlaps=0;ID=YIR018C-A;Name=YIR018C-A
XII	S-MART	transcript	724044	724433	.	+	.	seqedit=false;p_id=P1744;gene_id=YLR297W;tss_id=TSS2873;nbOverlaps=0;ID=YLR297W;Name=YLR297W
IX	S-MART	transcript	384609	385346	.	+	.	seqedit=false;p_id=P6490;gene_id=YIR018W;tss_id=TSS6567;nbOverlaps=0;ID=YIR018W;Name=YAP5
XII	S-MART	transcript	727911	728003	.	-	.	seqedit=false;p_id=P811;gene_id=YLR299C-A;tss_id=TSS6369;nbOverlaps=0;ID=YLR299C-A;Name=YLR299C-A
II	S-MART	transcript	248806	251016	.	-	.	seqedit=false;p_id=P6474;gene_id=YBR007C;tss_id=TSS7010;nbOverlaps=0;ID=YBR007C;Name=DSF2
II	S-MART	transcript	86722	87789	.	-	.	seqedit=false;p_id=P3915;gene_id=YBL074C;tss_id=TSS1922;nbOverlaps=0;ID=YBL074C;Name=AAR2
II	S-MART	transcript	398614	400890	.	-	.	seqedit=false;p_id=P3506;gene_id=YBR080C;tss_id=TSS6341;nbOverlaps=0;ID=YBR080C;Name=SEC18
II	S-MART	transcript	87646	87957	.	+	.	seqedit=false;p_id=P5428;gene_id=YBL073W;tss_id=TSS5884;nbOverlaps=0;ID=YBL073W;Name=YBL073W
II	S-MART	transcript	401253	405251	.	-	.	seqedit=false;p_id=P4622;gene_id=YBR081C;tss_id=TSS1192;nbOverlaps=0;ID=YBR081C;Name=SPT7
II	S-MART	transcript	84499	86448	.	-	.	seqedit=false;p_id=P5026;gene_id=YBL075C;tss_id=TSS6830;nbOverlaps=0;ID=YBL075C;Name=SSA3
X	S-MART	transcript	218853	220016	.	-	.	seqedit=false;p_id=P5644;gene_id=YJL107C;tss_id=TSS3427;nbOverlaps=0;ID=YJL107C;Name=YJL107C
II	S-MART	transcript	81043	84261	.	-	.	seqedit=false;p_id=P3507;gene_id=YBL076C;tss_id=TSS6131;nbOverlaps=0;ID=YBL076C;Name=ILS1
XII	S-MART	transcript	732542	733876	.	+	.	seqedit=false;p_id=P262;gene_id=YLR303W;tss_id=TSS4627;nbOverlaps=0;ID=YLR303W;Name=MET17
II	S-MART	transcript	80378	80731	.	-	.	seqedit=false;p_id=P1337;gene_id=YBL078C;tss_id=TSS4836;nbOverlaps=0;ID=YBL078C;Name=ATG8
X	S-MART	transcript	209922	211577	.	-	.	seqedit=false;p_id=P5863;gene_id=YJL110C;tss_id=TSS3389;nbOverlaps=0;ID=YJL110C;Name=GZF3
II	S-MART	transcript	252563	254209	.	-	.	seqedit=false;p_id=P1981;gene_id=YBR008C;tss_id=TSS6835;nbOverlaps=0;ID=YBR008C;Name=FLR1
II	S-MART	transcript	80897	81328	.	+	.	seqedit=false;p_id=P5944;gene_id=YBL077W;tss_id=TSS2118;nbOverlaps=0;ID=YBL077W;Name=YBL077W
XII	S-MART	transcript	386511	388220	.	-	.	seqedit=false;p_id=P3354;gene_id=YLR120C;tss_id=TSS1717;nbOverlaps=0;ID=YLR120C;Name=YPS1
XII	S-MART	transcript	388672	388773	.	+	.	seqedit=false;p_id=P4237;gene_id=YLR120W-A;tss_id=TSS4574;nbOverlaps=0;ID=YLR120W-A;Name=YLR120W-A
XIV	S-MART	transcript	519099	519169	.	-	.	seqedit=false;gene_id=tD(GUC)N;tss_id=TSS1468;nbOverlaps=0;ID=tD(GUC)N;Name=tD(GUC)N
XII	S-MART	transcript	388744	390270	.	-	.	seqedit=false;p_id=P5176;gene_id=YLR121C;tss_id=TSS641;nbOverlaps=0;ID=YLR121C;Name=YPS3
II	S-MART	transcript	409169	410629	.	+	.	seqedit=false;p_id=P6286;gene_id=YBR083W;tss_id=TSS2519;nbOverlaps=0;ID=YBR083W;Name=TEC1
XII	S-MART	transcript	395758	398319	.	-	.	seqedit=false;p_id=P3240;gene_id=YLR127C;tss_id=TSS1170;nbOverlaps=0;ID=YLR127C;Name=APC2
XI	S-MART	transcript	191679	193070	.	-	.	seqedit=false;p_id=P3494;gene_id=YKL133C;tss_id=TSS4984;nbOverlaps=0;ID=YKL133C;Name=YKL133C
II	S-MART	transcript	75259	79767	.	+	.	seqedit=false;p_id=P1097;gene_id=YBL079W;tss_id=TSS6063;nbOverlaps=0;ID=YBL079W;Name=NUP170
XII	S-MART	transcript	391078	391407	.	-	.	seqedit=false;p_id=P5878;gene_id=YLR123C;tss_id=TSS6277;nbOverlaps=0;ID=YLR123C;Name=YLR123C
XII	S-MART	transcript	391600	391944	.	+	.	seqedit=false;p_id=P6597;gene_id=YLR124W;tss_id=TSS5527;nbOverlaps=0;ID=YLR124W;Name=YLR124W
XII	S-MART	transcript	393484	393894	.	+	.	seqedit=false;p_id=P5774;gene_id=YLR125W;tss_id=TSS716;nbOverlaps=0;ID=YLR125W;Name=YLR125W
XII	S-MART	transcript	394765	395520	.	-	.	seqedit=false;p_id=P3732;gene_id=YLR126C;tss_id=TSS1040;nbOverlaps=0;ID=YLR126C;Name=YLR126C
II	S-MART	transcript	414186	415261	.	-	.	seqedit=false;p_id=P3791;gene_id=YBR084C-A;tss_id=TSS6190;nbOverlaps=0;ID=YBR084C-A;Name=RPL19A
II	S-MART	exon	414186	414753	.	-	.	ID=YBR084C-A-exon1;Name=RPL19A-exon1;Parent=YBR084C-A
II	S-MART	exon	415260	415261	.	-	.	ID=YBR084C-A-exon2;Name=RPL19A-exon2;Parent=YBR084C-A
XII	S-MART	transcript	398530	399433	.	+	.	seqedit=false;p_id=P4000;gene_id=YLR128W;tss_id=TSS881;nbOverlaps=0;ID=YLR128W;Name=DCN1
XII	S-MART	exon	398530	398532	.	+	.	ID=YLR128W-exon1;Name=DCN1-exon1;Parent=YLR128W
XII	S-MART	exon	398627	399433	.	+	.	ID=YLR128W-exon2;Name=DCN1-exon2;Parent=YLR128W
II	S-MART	transcript	73070	74695	.	-	.	seqedit=false;p_id=P5392;gene_id=YBL080C;tss_id=TSS2577;nbOverlaps=0;ID=YBL080C;Name=PET112
XII	S-MART	transcript	399657	402488	.	+	.	seqedit=false;p_id=P5553;gene_id=YLR129W;tss_id=TSS5814;nbOverlaps=0;ID=YLR129W;Name=DIP2
XV	S-MART	transcript	185438	185644	.	+	.	seqedit=false;p_id=P389;gene_id=YOL077W-A;tss_id=TSS6074;nbOverlaps=0;ID=YOL077W-A;Name=ATP19
XII	S-MART	transcript	402794	404062	.	-	.	seqedit=false;p_id=P836;gene_id=YLR130C;tss_id=TSS3603;nbOverlaps=0;ID=YLR130C;Name=ZRT2
XII	S-MART	transcript	404510	406822	.	-	.	seqedit=false;p_id=P3635;gene_id=YLR131C;tss_id=TSS6000;nbOverlaps=0;ID=YLR131C;Name=ACE2
XII	S-MART	transcript	744151	744851	.	+	.	seqedit=false;p_id=P6545;gene_id=YLR306W;tss_id=TSS115;nbOverlaps=0;ID=YLR306W;Name=UBC12
XII	S-MART	exon	744151	744153	.	+	.	ID=YLR306W-exon1;Name=UBC12-exon1;Parent=YLR306W
XII	S-MART	exon	744288	744851	.	+	.	ID=YLR306W-exon2;Name=UBC12-exon2;Parent=YLR306W
XII	S-MART	transcript	407283	408155	.	-	.	seqedit=false;p_id=P2538;gene_id=YLR132C;tss_id=TSS4861;nbOverlaps=0;ID=YLR132C;Name=USB1
XII	S-MART	transcript	408445	410193	.	+	.	seqedit=false;p_id=P5268;gene_id=YLR133W;tss_id=TSS3528;nbOverlaps=0;ID=YLR133W;Name=CKI1
II	S-MART	transcript	69751	71127	.	-	.	seqedit=false;p_id=P6530;gene_id=YBL082C;tss_id=TSS3218;nbOverlaps=0;ID=YBL082C;Name=ALG3
XII	S-MART	transcript	410723	412414	.	+	.	seqedit=false;p_id=P3491;gene_id=YLR134W;tss_id=TSS408;nbOverlaps=0;ID=YLR134W;Name=PDC5
XII	S-MART	transcript	413281	415527	.	+	.	seqedit=false;p_id=P187;gene_id=YLR135W;tss_id=TSS5865;nbOverlaps=0;ID=YLR135W;Name=SLX4
XII	S-MART	transcript	415801	416658	.	-	.	seqedit=false;p_id=P4901;gene_id=YLR136C;tss_id=TSS5570;nbOverlaps=0;ID=YLR136C;Name=TIS11
XII	S-MART	transcript	417006	418109	.	+	.	seqedit=false;p_id=P959;gene_id=YLR137W;tss_id=TSS715;nbOverlaps=0;ID=YLR137W;Name=RKM5
II	S-MART	transcript	241708	242568	.	-	.	seqedit=false;p_id=P2204;gene_id=YBR002C;tss_id=TSS6884;nbOverlaps=0;ID=YBR002C;Name=RER2
XII	S-MART	transcript	418437	421394	.	+	.	seqedit=false;p_id=P2823;gene_id=YLR138W;tss_id=TSS3691;nbOverlaps=0;ID=YLR138W;Name=NHA1
XII	S-MART	transcript	421542	423473	.	-	.	seqedit=false;p_id=P3922;gene_id=YLR139C;tss_id=TSS3891;nbOverlaps=0;ID=YLR139C;Name=SLS1
III	S-MART	transcript	85102	86418	.	+	.	seqedit=false;p_id=P766;gene_id=YCL020W;tss_id=TSS1270;nbOverlaps=0;ID=YCL020W;Name=YCL020W
XII	S-MART	transcript	423683	424774	.	+	.	seqedit=false;p_id=P5396;gene_id=YLR141W;tss_id=TSS4548;nbOverlaps=0;ID=YLR141W;Name=RRN5
XII	S-MART	transcript	423474	423800	.	+	.	seqedit=false;p_id=P4243;gene_id=YLR140W;tss_id=TSS5674;nbOverlaps=0;ID=YLR140W;Name=YLR140W
XII	S-MART	transcript	425186	426616	.	+	.	seqedit=false;p_id=P4838;gene_id=YLR142W;tss_id=TSS3025;nbOverlaps=0;ID=YLR142W;Name=PUT1
XII	S-MART	transcript	429677	432016	.	-	.	seqedit=false;p_id=P574;gene_id=YLR144C;tss_id=TSS6483;nbOverlaps=0;ID=YLR144C;Name=ACF2
XII	S-MART	transcript	427329	429386	.	+	.	seqedit=false;p_id=P1243;gene_id=YLR143W;tss_id=TSS1014;nbOverlaps=0;ID=YLR143W;Name=YLR143W
XII	S-MART	transcript	432168	432773	.	+	.	seqedit=false;p_id=P1953;gene_id=YLR145W;tss_id=TSS3201;nbOverlaps=0;ID=YLR145W;Name=RMP1
III	S-MART	transcript	79162	82275	.	+	.	seqedit=false;p_id=P5360;gene_id=YCL024W;tss_id=TSS4591;nbOverlaps=0;ID=YCL024W;Name=KCC4
XII	S-MART	transcript	432823	433725	.	-	.	seqedit=false;p_id=P924;gene_id=YLR146C;tss_id=TSS3095;nbOverlaps=0;ID=YLR146C;Name=SPE4
XII	S-MART	transcript	433870	434058	.	+	.	seqedit=false;p_id=P2125;gene_id=YLR146W-A;tss_id=TSS2382;nbOverlaps=0;ID=YLR146W-A;Name=YLR146W-A
XV	S-MART	transcript	181057	181455	.	+	.	seqedit=false;p_id=P799;gene_id=YOL079W;tss_id=TSS1675;nbOverlaps=0;ID=YOL079W;Name=YOL079W
XII	S-MART	transcript	434158	434463	.	-	.	seqedit=false;p_id=P6173;gene_id=YLR147C;tss_id=TSS4824;nbOverlaps=0;ID=YLR147C;Name=SMD3
XV	S-MART	transcript	571958	572029	.	+	.	seqedit=false;gene_id=tD(GUC)O;tss_id=TSS762;nbOverlaps=0;ID=tD(GUC)O;Name=tD(GUC)O
XII	S-MART	transcript	434641	437397	.	+	.	seqedit=false;p_id=P5709;gene_id=YLR148W;tss_id=TSS719;nbOverlaps=0;ID=YLR148W;Name=PEP3
II	S-MART	transcript	418907	419164	.	-	.	seqedit=false;p_id=P1220;gene_id=YBR085C-A;tss_id=TSS2058;nbOverlaps=0;ID=YBR085C-A;Name=YBR085C-A
XII	S-MART	transcript	440370	440456	.	-	.	seqedit=false;p_id=P3808;gene_id=YLR149C-A;tss_id=TSS4098;nbOverlaps=0;ID=YLR149C-A;Name=YLR149C-A
XII	S-MART	transcript	437631	439823	.	-	.	seqedit=false;p_id=P5985;gene_id=YLR149C;tss_id=TSS3584;nbOverlaps=0;ID=YLR149C;Name=YLR149C
III	S-MART	transcript	81570	82085	.	-	.	seqedit=false;p_id=P3438;gene_id=YCL022C;tss_id=TSS3004;nbOverlaps=0;ID=YCL022C;Name=YCL022C
XII	S-MART	transcript	440467	441288	.	+	.	seqedit=false;p_id=P2308;gene_id=YLR150W;tss_id=TSS2478;nbOverlaps=0;ID=YLR150W;Name=STM1
XII	S-MART	transcript	441715	442737	.	-	.	seqedit=false;p_id=P4828;gene_id=YLR151C;tss_id=TSS6398;nbOverlaps=0;ID=YLR151C;Name=PCD1
XV	S-MART	transcript	171070	180309	.	+	.	seqedit=false;p_id=P1829;gene_id=YOL081W;tss_id=TSS1876;nbOverlaps=0;ID=YOL081W;Name=IRA2
XII	S-MART	transcript	445524	447575	.	-	.	seqedit=false;p_id=P2349;gene_id=YLR153C;tss_id=TSS1203;nbOverlaps=0;ID=YLR153C;Name=ACS2
XII	S-MART	transcript	442958	444688	.	-	.	seqedit=false;p_id=P4845;gene_id=YLR152C;tss_id=TSS3255;nbOverlaps=0;ID=YLR152C;Name=YLR152C
II	S-MART	transcript	415983	416906	.	+	.	seqedit=false;p_id=P4990;gene_id=YBR085W;tss_id=TSS1609;nbOverlaps=0;ID=YBR085W;Name=AAC3
XII	S-MART	transcript	447982	448314	.	-	.	seqedit=false;p_id=P4113;gene_id=YLR154C;tss_id=TSS3706;nbOverlaps=0;ID=YLR154C;Name=RNH203
XII	S-MART	transcript	462522	462671	.	-	.	seqedit=false;p_id=P4175;gene_id=YLR154C-G;tss_id=TSS2149;nbOverlaps=0;ID=YLR154C-G;Name=YLR154C-G
III	S-MART	transcript	78949	79296	.	-	.	seqedit=false;p_id=P1818;gene_id=YCL023C;tss_id=TSS4251;nbOverlaps=0;ID=YCL023C;Name=YCL023C
XII	S-MART	transcript	468827	468958	.	-	.	seqedit=false;p_id=P4468;gene_id=YLR154C-H;tss_id=TSS2612;nbOverlaps=0;ID=YLR154C-H;Name=YLR154C-H
XII	S-MART	transcript	452438	452623	.	+	.	seqedit=false;p_id=P2078;gene_id=YLR154W-A;tss_id=TSS491;nbOverlaps=0;ID=YLR154W-A;Name=YLR154W-A
XV	S-MART	transcript	168727	169974	.	+	.	seqedit=false;p_id=P864;gene_id=YOL082W;tss_id=TSS3283;nbOverlaps=0;ID=YOL082W;Name=ATG19
XII	S-MART	transcript	454392	454556	.	+	.	seqedit=false;p_id=P297;gene_id=YLR154W-B;tss_id=TSS3252;nbOverlaps=0;ID=YLR154W-B;Name=YLR154W-B
XII	S-MART	transcript	454696	455070	.	+	.	seqedit=false;p_id=P184;gene_id=YLR154W-C;tss_id=TSS6356;nbOverlaps=0;ID=YLR154W-C;Name=TAR1
XII	S-MART	transcript	747937	748875	.	+	.	seqedit=false;p_id=P2050;gene_id=YLR308W;tss_id=TSS3895;nbOverlaps=0;ID=YLR308W;Name=CDA2
XII	S-MART	transcript	455433	455636	.	+	.	seqedit=false;p_id=P3920;gene_id=YLR154W-E;tss_id=TSS6888;nbOverlaps=0;ID=YLR154W-E;Name=YLR154W-E
XII	S-MART	transcript	455883	456023	.	+	.	seqedit=false;p_id=P6314;gene_id=YLR154W-F;tss_id=TSS175;nbOverlaps=0;ID=YLR154W-F;Name=YLR154W-F
III	S-MART	transcript	76018	77919	.	-	.	seqedit=false;p_id=P26;gene_id=YCL025C;tss_id=TSS2268;nbOverlaps=0;ID=YCL025C;Name=AGP1
XII	S-MART	transcript	469317	470405	.	-	.	seqedit=false;p_id=P144;gene_id=YLR155C;tss_id=TSS6717;nbOverlaps=0;ID=YLR155C;Name=ASP3-1
XII	S-MART	transcript	472479	472610	.	-	.	seqedit=false;p_id=P3910;gene_id=YLR156C-A;tss_id=TSS5301;nbOverlaps=0;ID=YLR156C-A;Name=YLR156C-A
XV	S-MART	transcript	166461	166601	.	-	.	seqedit=false;p_id=P5331;gene_id=YOL083C-A;tss_id=TSS61;nbOverlaps=0;ID=YOL083C-A;Name=YOL083C-A
XII	S-MART	transcript	472969	474057	.	-	.	seqedit=false;p_id=P5231;gene_id=YLR157C;tss_id=TSS1122;nbOverlaps=0;ID=YLR157C;Name=ASP3-2
XII	S-MART	transcript	472113	472457	.	+	.	seqedit=false;p_id=P3887;gene_id=YLR156W;tss_id=TSS1531;nbOverlaps=0;ID=YLR156W;Name=YLR156W
II	S-MART	transcript	423765	424829	.	+	.	seqedit=false;p_id=P4407;gene_id=YBR087W;tss_id=TSS2834;nbOverlaps=0;ID=YBR087W;Name=RFC5
XII	S-MART	transcript	480279	481601	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_0009;p_id=P2846;gene_id=YLR157C-A;tss_id=TSS2125;nbOverlaps=33;ID=YLR157C-A;Name=YLR157C-A
XII	S-MART	transcript	476333	481601	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:116:10578:16663#0--HWUSI-EAS1656_0009_FC:3:39:4388:6135#0--HWUSI-EAS1656_000;p_id=P4692;gene_id=YLR157C-B;tss_id=TSS2125;nbOverlaps=113;ID=YLR157C-B;Name=YLR157C-B
XII	S-MART	exon	476333	480295	.	-	.	ID=YLR157C-B-exon1;Name=YLR157C-B-exon1;Parent=YLR157C-B
XII	S-MART	exon	480297	481601	.	-	.	ID=YLR157C-B-exon2;Name=YLR157C-B-exon2;Parent=YLR157C-B
III	S-MART	transcript	74704	75285	.	-	.	seqedit=false;p_id=P5661;gene_id=YCL026C-A;tss_id=TSS2730;nbOverlaps=0;ID=YCL026C-A;Name=FRM2
XV	S-MART	transcript	165714	166952	.	+	.	seqedit=false;p_id=P2274;gene_id=YOL083W;tss_id=TSS3401;nbOverlaps=0;ID=YOL083W;Name=ATG34
XII	S-MART	transcript	482059	482190	.	-	.	seqedit=false;p_id=P1322;gene_id=YLR157C-C;tss_id=TSS3327;nbOverlaps=0;ID=YLR157C-C;Name=YLR157C-C
XII	S-MART	transcript	475764	475976	.	+	.	seqedit=false;p_id=P6247;gene_id=YLR157W-D;tss_id=TSS1456;nbOverlaps=0;ID=YLR157W-D;Name=YLR157W-D
II	S-MART	transcript	424990	425766	.	-	.	seqedit=false;p_id=P1441;gene_id=YBR088C;tss_id=TSS2976;nbOverlaps=0;ID=YBR088C;Name=POL30
XII	S-MART	transcript	481873	482037	.	+	.	seqedit=false;p_id=P4058;gene_id=YLR157W-E;tss_id=TSS4614;nbOverlaps=0;ID=YLR157W-E;Name=YLR157W-E
XII	S-MART	transcript	482549	483637	.	-	.	seqedit=false;p_id=P4868;gene_id=YLR158C;tss_id=TSS3697;nbOverlaps=0;ID=YLR158C;Name=ASP3-3
IV	S-MART	transcript	1478608	1480161	.	+	.	seqedit=false;p_id=P775;gene_id=YDR518W;tss_id=TSS2504;nbOverlaps=0;ID=YDR518W;Name=EUG1
XII	S-MART	transcript	485711	485842	.	-	.	seqedit=false;p_id=P4270;gene_id=YLR159C-A;tss_id=TSS6439;nbOverlaps=0;ID=YLR159C-A;Name=YLR159C-A
XII	S-MART	transcript	486201	487289	.	-	.	seqedit=false;p_id=P5945;gene_id=YLR160C;tss_id=TSS5681;nbOverlaps=0;ID=YLR160C;Name=ASP3-4
XV	S-MART	transcript	162356	165331	.	+	.	seqedit=false;p_id=P4774;gene_id=YOL084W;tss_id=TSS1009;nbOverlaps=0;ID=YOL084W;Name=PHM7
XII	S-MART	transcript	485345	485689	.	+	.	seqedit=false;p_id=P4346;gene_id=YLR159W;tss_id=TSS4552;nbOverlaps=0;ID=YLR159W;Name=YLR159W
Mito	S-MART	transcript	68322	68396	.	+	.	seqedit=false;gene_id=tD(GUC)Q;tss_id=TSS781;nbOverlaps=0;ID=tD(GUC)Q;Name=tD(GUC)Q
XII	S-MART	transcript	766542	769196	.	+	.	seqedit=false;p_id=P975;gene_id=YLR318W;tss_id=TSS1515;nbOverlaps=0;ID=YLR318W;Name=EST2
II	S-MART	transcript	426190	426489	.	-	.	seqedit=false;p_id=P5456;gene_id=YBR089C-A;tss_id=TSS4526;nbOverlaps=0;ID=YBR089C-A;Name=NHP6B
V	S-MART	transcript	456319	457605	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:18748:16405#0--HWUSI-EAS1656_0009_FC:3:27:15460:17176#0--HWUSI-EAS1656_00;p_id=P5964;gene_id=YER143W;tss_id=TSS1618;nbOverlaps=126;ID=YER143W;Name=DDI1
XI	S-MART	transcript	185957	186292	.	+	.	seqedit=false;p_id=P3534;gene_id=YKL137W;tss_id=TSS4159;nbOverlaps=0;ID=YKL137W;Name=CMC1
IV	S-MART	transcript	1480425	1480832	.	+	.	seqedit=false;p_id=P1779;gene_id=YDR519W;tss_id=TSS6536;nbOverlaps=0;ID=YDR519W;Name=FPR2
X	S-MART	transcript	330431	333073	.	-	.	seqedit=false;p_id=P706;gene_id=YJL056C;tss_id=TSS4698;nbOverlaps=0;ID=YJL056C;Name=ZAP1
XV	S-MART	transcript	161579	161791	.	+	.	seqedit=false;p_id=P1179;gene_id=YOL085W-A;tss_id=TSS3592;nbOverlaps=0;ID=YOL085W-A;Name=YOL085W-A
II	S-MART	transcript	427155	427484	.	-	.	seqedit=false;p_id=P357;gene_id=YBR091C;tss_id=TSS5802;nbOverlaps=0;ID=YBR091C;Name=TIM12
III	S-MART	transcript	70150	71367	.	+	.	seqedit=false;p_id=P1534;gene_id=YCL028W;tss_id=TSS2925;nbOverlaps=0;ID=YCL028W;Name=RNQ1
XV	S-MART	transcript	161673	162014	.	-	.	seqedit=false;p_id=P654;gene_id=YOL085C;tss_id=TSS2625;nbOverlaps=0;ID=YOL085C;Name=YOL085C
X	S-MART	transcript	191022	191345	.	+	.	seqedit=false;p_id=P1018;gene_id=YJL120W;tss_id=TSS2853;nbOverlaps=0;ID=YJL120W;Name=YJL120W
IV	S-MART	transcript	1483795	1485303	.	-	.	seqedit=false;p_id=P4172;gene_id=YDR522C;tss_id=TSS2132;nbOverlaps=0;ID=YDR522C;Name=SPS2
XV	S-MART	transcript	159548	160594	.	-	.	seqedit=false;p_id=P1065;gene_id=YOL086C;tss_id=TSS991;nbOverlaps=0;ID=YOL086C;Name=ADH1
X	S-MART	transcript	189716	190243	.	+	.	seqedit=false;p_id=P2190;gene_id=YJL122W;tss_id=TSS1057;nbOverlaps=0;ID=YJL122W;Name=ALB1
IV	S-MART	transcript	1483141	1483476	.	+	.	seqedit=false;p_id=P5048;gene_id=YDR521W;tss_id=TSS938;nbOverlaps=0;ID=YDR521W;Name=YDR521W
XV	S-MART	transcript	159173	159445	.	+	.	seqedit=false;p_id=P4558;gene_id=YOL086W-A;tss_id=TSS5086;nbOverlaps=0;ID=YOL086W-A;Name=YOL086W-A
XII	S-MART	transcript	762575	764137	.	-	.	seqedit=false;p_id=P3147;gene_id=YLR314C;tss_id=TSS5097;nbOverlaps=0;ID=YLR314C;Name=CDC3
II	S-MART	transcript	257112	257975	.	-	.	seqedit=false;p_id=P3335;gene_id=YBR011C;tss_id=TSS1319;nbOverlaps=0;ID=YBR011C;Name=IPP1
IV	S-MART	transcript	1485566	1487038	.	-	.	seqedit=false;p_id=P5212;gene_id=YDR523C;tss_id=TSS6766;nbOverlaps=0;ID=YDR523C;Name=SPS1
XV	S-MART	transcript	153912	154745	.	-	.	seqedit=false;p_id=P4374;gene_id=YOL088C;tss_id=TSS2812;nbOverlaps=0;ID=YOL088C;Name=MPD2
IV	S-MART	transcript	1017207	1017278	.	-	.	seqedit=false;gene_id=tE(CUC)D;tss_id=TSS2918;nbOverlaps=0;ID=tE(CUC)D;Name=tE(CUC)D
XII	S-MART	transcript	764808	765269	.	+	.	seqedit=false;p_id=P4430;gene_id=YLR315W;tss_id=TSS4460;nbOverlaps=0;ID=YLR315W;Name=NKP2
XI	S-MART	transcript	186416	186814	.	+	.	seqedit=false;p_id=P1813;gene_id=YKL136W;tss_id=TSS3765;nbOverlaps=0;ID=YKL136W;Name=YKL136W
IV	S-MART	transcript	1487542	1488990	.	-	.	seqedit=false;p_id=P6168;gene_id=YDR524C;tss_id=TSS5414;nbOverlaps=0;ID=YDR524C;Name=AGE1
XV	S-MART	transcript	155287	158637	.	-	.	seqedit=false;p_id=P2034;gene_id=YOL087C;tss_id=TSS2852;nbOverlaps=0;ID=YOL087C;Name=YOL087C
XII	S-MART	transcript	765266	766358	.	-	.	seqedit=false;p_id=P2070;gene_id=YLR316C;tss_id=TSS4136;nbOverlaps=0;ID=YLR316C;Name=TAD3
XII	S-MART	exon	765266	766073	.	-	.	ID=YLR316C-exon1;Name=TAD3-exon1;Parent=YLR316C
XII	S-MART	exon	766130	766181	.	-	.	ID=YLR316C-exon2;Name=TAD3-exon2;Parent=YLR316C
XII	S-MART	exon	766250	766358	.	-	.	ID=YLR316C-exon3;Name=TAD3-exon3;Parent=YLR316C
III	S-MART	transcript	62776	63282	.	-	.	seqedit=false;p_id=P5425;gene_id=YCL033C;tss_id=TSS5168;nbOverlaps=0;ID=YCL033C;Name=MXR2
XV	S-MART	transcript	150398	153490	.	-	.	seqedit=false;p_id=P5879;gene_id=YOL089C;tss_id=TSS479;nbOverlaps=0;ID=YOL089C;Name=HAL9
II	S-MART	transcript	429548	430951	.	-	.	seqedit=false;p_id=P1854;gene_id=YBR093C;tss_id=TSS4347;nbOverlaps=0;ID=YBR093C;Name=PHO5
III	S-MART	transcript	61658	62722	.	+	.	seqedit=false;p_id=P2882;gene_id=YCL034W;tss_id=TSS2161;nbOverlaps=0;ID=YCL034W;Name=LSB5
XV	S-MART	transcript	147382	150276	.	+	.	seqedit=false;p_id=P3001;gene_id=YOL090W;tss_id=TSS3397;nbOverlaps=0;ID=YOL090W;Name=MSH2
II	S-MART	transcript	432036	434297	.	+	.	seqedit=false;p_id=P5624;gene_id=YBR094W;tss_id=TSS1075;nbOverlaps=0;ID=YBR094W;Name=PBY1
IV	S-MART	transcript	1489403	1489492	.	+	.	seqedit=false;p_id=P3939;gene_id=YDR524W-C;tss_id=TSS5822;nbOverlaps=0;ID=YDR524W-C;Name=YDR524W-C
XV	S-MART	transcript	145334	147163	.	+	.	seqedit=false;p_id=P3400;gene_id=YOL091W;tss_id=TSS1045;nbOverlaps=0;ID=YOL091W;Name=SPO21
II	S-MART	transcript	434406	435698	.	-	.	seqedit=false;p_id=P2337;gene_id=YBR095C;tss_id=TSS1594;nbOverlaps=0;ID=YBR095C;Name=RXT2
IV	S-MART	transcript	1489905	1490234	.	+	.	seqedit=false;p_id=P4375;gene_id=YDR525W;tss_id=TSS4897;nbOverlaps=0;ID=YDR525W;Name=API2
XV	S-MART	transcript	142815	143696	.	+	.	seqedit=false;p_id=P1050;gene_id=YOL093W;tss_id=TSS565;nbOverlaps=0;ID=YOL093W;Name=TRM10
IX	S-MART	transcript	197592	197663	.	+	.	seqedit=false;gene_id=tE(CUC)I;tss_id=TSS1809;nbOverlaps=0;ID=tE(CUC)I;Name=tE(CUC)I
II	S-MART	transcript	616127	618523	.	-	.	seqedit=false;p_id=P1059;gene_id=YBR198C;tss_id=TSS1789;nbOverlaps=0;ID=YBR198C;Name=TAF5
XI	S-MART	transcript	185286	185681	.	-	.	seqedit=false;p_id=P863;gene_id=YKL138C;tss_id=TSS5348;nbOverlaps=0;ID=YKL138C;Name=MRPL31
IV	S-MART	transcript	1490596	1490835	.	+	.	seqedit=false;p_id=P4294;gene_id=YDR525W-A;tss_id=TSS4787;nbOverlaps=0;ID=YDR525W-A;Name=SNA2
VII	S-MART	transcript	328874	330607	.	-	.	seqedit=false;p_id=P1856;gene_id=YGL095C;tss_id=TSS1886;nbOverlaps=0;ID=YGL095C;Name=VPS45
VII	S-MART	transcript	325331	326161	.	+	.	seqedit=false;p_id=P4506;gene_id=YGL096W;tss_id=TSS3553;nbOverlaps=0;ID=YGL096W;Name=TOS8
VII	S-MART	transcript	321782	323230	.	+	.	seqedit=false;p_id=P1254;gene_id=YGL097W;tss_id=TSS1747;nbOverlaps=0;ID=YGL097W;Name=SRM1
IV	S-MART	transcript	1491094	1492413	.	+	.	seqedit=false;p_id=P255;gene_id=YDR527W;tss_id=TSS6408;nbOverlaps=0;ID=YDR527W;Name=RBA50
VII	S-MART	transcript	317342	318079	.	+	.	seqedit=false;p_id=P2799;gene_id=YGL098W;tss_id=TSS6070;nbOverlaps=0;ID=YGL098W;Name=USE1
VII	S-MART	transcript	314631	316553	.	+	.	seqedit=false;p_id=P4040;gene_id=YGL099W;tss_id=TSS5451;nbOverlaps=0;ID=YGL099W;Name=LSG1
VII	S-MART	transcript	313234	314283	.	+	.	seqedit=false;p_id=P4360;gene_id=YGL100W;tss_id=TSS6466;nbOverlaps=0;ID=YGL100W;Name=SEH1
VII	S-MART	transcript	310967	311927	.	+	.	seqedit=false;p_id=P4257;gene_id=YGL103W;tss_id=TSS1150;nbOverlaps=0;ID=YGL103W;Name=RPL28
VII	S-MART	exon	310967	311015	.	+	.	ID=YGL103W-exon1;Name=RPL28-exon1;Parent=YGL103W
VII	S-MART	exon	311527	311927	.	+	.	ID=YGL103W-exon2;Name=RPL28-exon2;Parent=YGL103W
VII	S-MART	transcript	312193	312840	.	+	.	seqedit=false;p_id=P556;gene_id=YGL101W;tss_id=TSS1553;nbOverlaps=0;ID=YGL101W;Name=YGL101W
VII	S-MART	transcript	311505	311933	.	-	.	seqedit=false;p_id=P2229;gene_id=YGL102C;tss_id=TSS607;nbOverlaps=0;ID=YGL102C;Name=YGL102C
III	S-MART	transcript	52645	54882	.	+	.	seqedit=false;p_id=P4892;gene_id=YCL039W;tss_id=TSS1159;nbOverlaps=0;ID=YCL039W;Name=GID7
XV	S-MART	transcript	139227	141347	.	-	.	seqedit=false;p_id=P3471;gene_id=YOL095C;tss_id=TSS6676;nbOverlaps=0;ID=YOL095C;Name=HMI1
VII	S-MART	transcript	308713	310173	.	-	.	seqedit=false;p_id=P4469;gene_id=YGL104C;tss_id=TSS3879;nbOverlaps=0;ID=YGL104C;Name=VPS73
VII	S-MART	transcript	307437	308567	.	+	.	seqedit=false;p_id=P3006;gene_id=YGL105W;tss_id=TSS6294;nbOverlaps=0;ID=YGL105W;Name=ARC1
VII	S-MART	transcript	306560	307009	.	+	.	seqedit=false;p_id=P4776;gene_id=YGL106W;tss_id=TSS6842;nbOverlaps=0;ID=YGL106W;Name=MLC1
VII	S-MART	transcript	304333	306273	.	-	.	seqedit=false;p_id=P3831;gene_id=YGL107C;tss_id=TSS5574;nbOverlaps=0;ID=YGL107C;Name=RMD9
III	S-MART	transcript	50838	52340	.	+	.	seqedit=false;p_id=P1749;gene_id=YCL040W;tss_id=TSS2038;nbOverlaps=0;ID=YCL040W;Name=GLK1
VII	S-MART	transcript	301537	303411	.	-	.	seqedit=false;p_id=P222;gene_id=YGL110C;tss_id=TSS3161;nbOverlaps=0;ID=YGL110C;Name=CUE3
VII	S-MART	transcript	303649	304071	.	-	.	seqedit=false;p_id=P5064;gene_id=YGL108C;tss_id=TSS4431;nbOverlaps=0;ID=YGL108C;Name=YGL108C
XV	S-MART	transcript	138107	139045	.	-	.	seqedit=false;p_id=P3134;gene_id=YOL096C;tss_id=TSS6018;nbOverlaps=0;ID=YOL096C;Name=COQ3
VII	S-MART	transcript	303513	303836	.	+	.	seqedit=false;p_id=P4547;gene_id=YGL109W;tss_id=TSS3338;nbOverlaps=0;ID=YGL109W;Name=YGL109W
VII	S-MART	transcript	299978	301369	.	+	.	seqedit=false;p_id=P5439;gene_id=YGL111W;tss_id=TSS782;nbOverlaps=0;ID=YGL111W;Name=NSA1
VII	S-MART	transcript	298178	299728	.	-	.	seqedit=false;p_id=P6127;gene_id=YGL112C;tss_id=TSS3404;nbOverlaps=0;ID=YGL112C;Name=TAF6
VII	S-MART	transcript	295932	297938	.	+	.	seqedit=false;p_id=P4352;gene_id=YGL113W;tss_id=TSS180;nbOverlaps=0;ID=YGL113W;Name=SLD3
II	S-MART	transcript	39145	40527	.	+	.	seqedit=false;p_id=P622;gene_id=YBL098W;tss_id=TSS670;nbOverlaps=0;ID=YBL098W;Name=BNA4
VII	S-MART	transcript	292033	293001	.	+	.	seqedit=false;p_id=P3003;gene_id=YGL115W;tss_id=TSS1782;nbOverlaps=0;ID=YGL115W;Name=SNF4
VII	S-MART	transcript	293460	295637	.	+	.	seqedit=false;p_id=P1486;gene_id=YGL114W;tss_id=TSS838;nbOverlaps=0;ID=YGL114W;Name=YGL114W
XV	S-MART	transcript	136527	137825	.	-	.	seqedit=false;p_id=P439;gene_id=YOL097C;tss_id=TSS1304;nbOverlaps=0;ID=YOL097C;Name=WRS1
VII	S-MART	transcript	289809	291641	.	+	.	seqedit=false;p_id=P2194;gene_id=YGL116W;tss_id=TSS6119;nbOverlaps=0;ID=YGL116W;Name=CDC20
II	S-MART	transcript	645167	645238	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)B;tss_id=TSS3809;nbOverlaps=1949;ID=tE(UUC)B;Name=tE(UUC)B
VII	S-MART	transcript	284442	285947	.	+	.	seqedit=false;p_id=P552;gene_id=YGL119W;tss_id=TSS3084;nbOverlaps=0;ID=YGL119W;Name=COQ8
VII	S-MART	transcript	288512	289309	.	+	.	seqedit=false;p_id=P2924;gene_id=YGL117W;tss_id=TSS2552;nbOverlaps=0;ID=YGL117W;Name=YGL117W
VII	S-MART	transcript	288014	288451	.	-	.	seqedit=false;p_id=P2648;gene_id=YGL118C;tss_id=TSS5712;nbOverlaps=0;ID=YGL118C;Name=YGL118C
IX	S-MART	transcript	437043	437735	.	-	.	seqedit=false;gene_id=YIR043C;tss_id=TSS2412;nbOverlaps=0;ID=YIR043C;Name=YIR043C
VII	S-MART	transcript	281634	283937	.	-	.	seqedit=false;p_id=P1089;gene_id=YGL120C;tss_id=TSS4887;nbOverlaps=0;ID=YGL120C;Name=PRP43
VII	S-MART	transcript	280777	281157	.	-	.	seqedit=false;p_id=P2098;gene_id=YGL121C;tss_id=TSS110;nbOverlaps=0;ID=YGL121C;Name=GPG1
XV	S-MART	transcript	136220	136405	.	+	.	seqedit=false;p_id=P507;gene_id=YOL097W-A;tss_id=TSS5548;nbOverlaps=0;ID=YOL097W-A;Name=YOL097W-A
VII	S-MART	transcript	278946	280523	.	-	.	seqedit=false;p_id=P3799;gene_id=YGL122C;tss_id=TSS4476;nbOverlaps=0;ID=YGL122C;Name=NAB2
VII	S-MART	transcript	277634	277864	.	-	.	seqedit=false;p_id=P1819;gene_id=YGL123C-A;tss_id=TSS2336;nbOverlaps=0;ID=YGL123C-A;Name=YGL123C-A
VII	S-MART	transcript	277617	278381	.	+	.	seqedit=false;p_id=P5158;gene_id=YGL123W;tss_id=TSS4882;nbOverlaps=0;ID=YGL123W;Name=RPS2
VII	S-MART	transcript	274780	276714	.	-	.	seqedit=false;p_id=P381;gene_id=YGL124C;tss_id=TSS1875;nbOverlaps=0;ID=YGL124C;Name=MON1
III	S-MART	transcript	50584	50943	.	+	.	seqedit=false;p_id=P4969;gene_id=YCL042W;tss_id=TSS5789;nbOverlaps=0;ID=YCL042W;Name=YCL042W
VII	S-MART	transcript	272520	274322	.	+	.	seqedit=false;p_id=P6103;gene_id=YGL125W;tss_id=TSS1427;nbOverlaps=0;ID=YGL125W;Name=MET13
VII	S-MART	transcript	270997	272139	.	+	.	seqedit=false;p_id=P296;gene_id=YGL126W;tss_id=TSS5596;nbOverlaps=0;ID=YGL126W;Name=SCS3
XV	S-MART	transcript	129237	132482	.	+	.	seqedit=false;p_id=P5166;gene_id=YOL100W;tss_id=TSS6497;nbOverlaps=0;ID=YOL100W;Name=PKH2
VII	S-MART	transcript	270392	270775	.	-	.	seqedit=false;p_id=P4595;gene_id=YGL127C;tss_id=TSS3951;nbOverlaps=0;ID=YGL127C;Name=SOH1
VII	S-MART	transcript	269293	270144	.	-	.	seqedit=false;p_id=P5688;gene_id=YGL128C;tss_id=TSS348;nbOverlaps=0;ID=YGL128C;Name=CWC23
VII	S-MART	transcript	267723	269075	.	-	.	seqedit=false;p_id=P3463;gene_id=YGL129C;tss_id=TSS5695;nbOverlaps=0;ID=YGL129C;Name=RSM23
VII	S-MART	transcript	266145	267524	.	+	.	seqedit=false;p_id=P1041;gene_id=YGL130W;tss_id=TSS6819;nbOverlaps=0;ID=YGL130W;Name=CEG1
IV	S-MART	transcript	1499396	1500553	.	-	.	seqedit=false;p_id=P1593;gene_id=YDR532C;tss_id=TSS4941;nbOverlaps=0;ID=YDR532C;Name=KRE28
VII	S-MART	transcript	261648	265859	.	-	.	seqedit=false;p_id=P1956;gene_id=YGL131C;tss_id=TSS4584;nbOverlaps=0;ID=YGL131C;Name=SNT2
VII	S-MART	transcript	257707	261501	.	+	.	seqedit=false;p_id=P807;gene_id=YGL133W;tss_id=TSS4843;nbOverlaps=0;ID=YGL133W;Name=ITC1
XV	S-MART	transcript	132725	135838	.	-	.	seqedit=false;p_id=P2956;gene_id=YOL098C;tss_id=TSS1929;nbOverlaps=0;ID=YOL098C;Name=YOL098C
VII	S-MART	transcript	261580	261915	.	+	.	seqedit=false;p_id=P1835;gene_id=YGL132W;tss_id=TSS4631;nbOverlaps=0;ID=YGL132W;Name=YGL132W
VII	S-MART	transcript	255663	256964	.	+	.	seqedit=false;p_id=P206;gene_id=YGL134W;tss_id=TSS4407;nbOverlaps=0;ID=YGL134W;Name=PCL10
II	S-MART	transcript	242809	244230	.	+	.	seqedit=false;p_id=P1963;gene_id=YBR003W;tss_id=TSS4947;nbOverlaps=0;ID=YBR003W;Name=COQ1
VII	S-MART	transcript	254641	255294	.	+	.	seqedit=false;p_id=P5842;gene_id=YGL135W;tss_id=TSS5693;nbOverlaps=0;ID=YGL135W;Name=RPL1B
VII	S-MART	transcript	252897	253859	.	-	.	seqedit=false;p_id=P6004;gene_id=YGL136C;tss_id=TSS4833;nbOverlaps=0;ID=YGL136C;Name=MRM2
III	S-MART	transcript	44623	46905	.	-	.	seqedit=false;p_id=P6223;gene_id=YCL045C;tss_id=TSS6412;nbOverlaps=0;ID=YCL045C;Name=EMC1
VII	S-MART	transcript	249869	252738	.	+	.	seqedit=false;p_id=P3719;gene_id=YGL137W;tss_id=TSS3826;nbOverlaps=0;ID=YGL137W;Name=SEC27
VII	S-MART	exon	249869	249886	.	+	.	ID=YGL137W-exon1;Name=SEC27-exon1;Parent=YGL137W
VII	S-MART	exon	250087	252738	.	+	.	ID=YGL137W-exon2;Name=SEC27-exon2;Parent=YGL137W
XV	S-MART	transcript	132017	132508	.	-	.	seqedit=false;p_id=P179;gene_id=YOL099C;tss_id=TSS5798;nbOverlaps=0;ID=YOL099C;Name=YOL099C
VII	S-MART	transcript	245716	248124	.	+	.	seqedit=false;p_id=P2461;gene_id=YGL139W;tss_id=TSS6722;nbOverlaps=0;ID=YGL139W;Name=FLC3
VII	S-MART	transcript	248494	249531	.	-	.	seqedit=false;p_id=P2650;gene_id=YGL138C;tss_id=TSS4700;nbOverlaps=0;ID=YGL138C;Name=YGL138C
VII	S-MART	transcript	238353	241085	.	+	.	seqedit=false;p_id=P4919;gene_id=YGL141W;tss_id=TSS6228;nbOverlaps=0;ID=YGL141W;Name=HUL5
III	S-MART	transcript	43661	44437	.	-	.	seqedit=false;p_id=P2767;gene_id=YCL047C;tss_id=TSS1096;nbOverlaps=0;ID=YCL047C;Name=POF1
VII	S-MART	transcript	241353	245012	.	-	.	seqedit=false;p_id=P5296;gene_id=YGL140C;tss_id=TSS3598;nbOverlaps=0;ID=YGL140C;Name=YGL140C
VII	S-MART	transcript	236269	238119	.	-	.	seqedit=false;p_id=P2698;gene_id=YGL142C;tss_id=TSS1626;nbOverlaps=0;ID=YGL142C;Name=GPI10
XV	S-MART	transcript	126982	127920	.	-	.	seqedit=false;p_id=P2555;gene_id=YOL101C;tss_id=TSS5484;nbOverlaps=0;ID=YOL101C;Name=IZH4
VII	S-MART	transcript	234717	235958	.	-	.	seqedit=false;p_id=P173;gene_id=YGL143C;tss_id=TSS4974;nbOverlaps=0;ID=YGL143C;Name=MRF1
III	S-MART	transcript	82462	82533	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)C;tss_id=TSS4273;nbOverlaps=1946;ID=tE(UUC)C;Name=tE(UUC)C
VII	S-MART	transcript	232450	234507	.	-	.	seqedit=false;p_id=P1935;gene_id=YGL144C;tss_id=TSS666;nbOverlaps=0;ID=YGL144C;Name=ROG1
VII	S-MART	transcript	230243	232348	.	+	.	seqedit=false;p_id=P3255;gene_id=YGL145W;tss_id=TSS4084;nbOverlaps=0;ID=YGL145W;Name=TIP20
VII	S-MART	transcript	228751	229686	.	-	.	seqedit=false;p_id=P4203;gene_id=YGL146C;tss_id=TSS6242;nbOverlaps=0;ID=YGL146C;Name=RRT6
III	S-MART	transcript	46640	46963	.	+	.	seqedit=false;p_id=P2927;gene_id=YCL046W;tss_id=TSS2638;nbOverlaps=0;ID=YCL046W;Name=YCL046W
VII	S-MART	transcript	227754	228329	.	-	.	seqedit=false;p_id=P2850;gene_id=YGL147C;tss_id=TSS2763;nbOverlaps=0;ID=YGL147C;Name=RPL9A
X	S-MART	transcript	324964	326190	.	+	.	seqedit=false;p_id=P535;gene_id=YJL059W;tss_id=TSS5836;nbOverlaps=0;ID=YJL059W;Name=YHC3
VII	S-MART	transcript	226399	227529	.	+	.	seqedit=false;p_id=P2533;gene_id=YGL148W;tss_id=TSS1344;nbOverlaps=0;ID=YGL148W;Name=ARO2
XV	S-MART	transcript	125997	126689	.	-	.	seqedit=false;p_id=P1701;gene_id=YOL102C;tss_id=TSS1557;nbOverlaps=0;ID=YOL102C;Name=TPT1
VII	S-MART	transcript	221104	225573	.	-	.	seqedit=false;p_id=P4744;gene_id=YGL150C;tss_id=TSS2269;nbOverlaps=0;ID=YGL150C;Name=INO80
VII	S-MART	transcript	225572	225877	.	+	.	seqedit=false;p_id=P5091;gene_id=YGL149W;tss_id=TSS1588;nbOverlaps=0;ID=YGL149W;Name=YGL149W
VII	S-MART	transcript	217524	220922	.	+	.	seqedit=false;p_id=P2963;gene_id=YGL151W;tss_id=TSS4884;nbOverlaps=0;ID=YGL151W;Name=NUT1
VII	S-MART	transcript	498476	499906	.	-	.	seqedit=false;p_id=P2634;gene_id=YGR002C;tss_id=TSS4020;nbOverlaps=0;ID=YGR002C;Name=SWC4
IV	S-MART	transcript	1506606	1507362	.	-	.	seqedit=false;p_id=P6164;gene_id=YDR535C;tss_id=TSS3858;nbOverlaps=0;ID=YDR535C;Name=YDR535C
IV	S-MART	exon	1506606	1507058	.	-	.	ID=YDR535C-exon1;Name=YDR535C-exon1;Parent=YDR535C
IV	S-MART	exon	1507315	1507362	.	-	.	ID=YDR535C-exon2;Name=YDR535C-exon2;Parent=YDR535C
II	S-MART	transcript	338720	339352	.	-	.	seqedit=false;p_id=P85;gene_id=YBR052C;tss_id=TSS5940;nbOverlaps=0;ID=YBR052C;Name=RFS1
XV	S-MART	transcript	124001	125830	.	+	.	seqedit=false;p_id=P1267;gene_id=YOL103W;tss_id=TSS5887;nbOverlaps=0;ID=YOL103W;Name=ITR2
II	S-MART	transcript	337988	338338	.	+	.	seqedit=false;p_id=P6357;gene_id=YBR051W;tss_id=TSS734;nbOverlaps=0;ID=YBR051W;Name=YBR051W
II	S-MART	transcript	343101	344135	.	+	.	seqedit=false;p_id=P2710;gene_id=YBR054W;tss_id=TSS2719;nbOverlaps=0;ID=YBR054W;Name=YRO2
II	S-MART	transcript	339675	340751	.	-	.	seqedit=false;p_id=P4216;gene_id=YBR053C;tss_id=TSS5889;nbOverlaps=0;ID=YBR053C;Name=YBR053C
II	S-MART	transcript	344602	347301	.	-	.	seqedit=false;p_id=P4981;gene_id=YBR055C;tss_id=TSS4547;nbOverlaps=0;ID=YBR055C;Name=PRP6
X	S-MART	transcript	425157	431237	.	+	.	seqedit=false;p_id=P5248;gene_id=YJL005W;tss_id=TSS5166;nbOverlaps=0;ID=YJL005W;Name=CYR1
II	S-MART	transcript	351293	351451	.	-	.	seqedit=false;p_id=P2405;gene_id=YBR056C-B;tss_id=TSS3164;nbOverlaps=0;ID=YBR056C-B;Name=YBR056C-B
II	S-MART	transcript	351255	351455	.	+	.	seqedit=false;p_id=P5666;gene_id=YBR056W-A;tss_id=TSS3117;nbOverlaps=0;ID=YBR056W-A;Name=YBR056W-A
XV	S-MART	transcript	118000	119322	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P5224;gene_id=YOL103W-A;tss_id=TSS406;nbOverlaps=22;ID=YOL103W-A;Name=YOL103W-A
II	S-MART	transcript	347879	349384	.	+	.	seqedit=false;p_id=P1190;gene_id=YBR056W;tss_id=TSS342;nbOverlaps=0;ID=YBR056W;Name=YBR056W
II	S-MART	transcript	352193	353293	.	-	.	seqedit=false;p_id=P5279;gene_id=YBR057C;tss_id=TSS2988;nbOverlaps=0;ID=YBR057C;Name=MUM2
II	S-MART	transcript	353672	356017	.	-	.	seqedit=false;p_id=P4132;gene_id=YBR058C;tss_id=TSS6088;nbOverlaps=0;ID=YBR058C;Name=UBP14
X	S-MART	transcript	289875	290774	.	-	.	seqedit=false;p_id=P6172;gene_id=YJL079C;tss_id=TSS2860;nbOverlaps=0;ID=YJL079C;Name=PRY1
X	S-MART	transcript	423138	424109	.	-	.	seqedit=false;p_id=P4736;gene_id=YJL006C;tss_id=TSS6724;nbOverlaps=0;ID=YJL006C;Name=CTK2
X	S-MART	transcript	285558	289226	.	-	.	seqedit=false;p_id=P3467;gene_id=YJL080C;tss_id=TSS89;nbOverlaps=0;ID=YJL080C;Name=SCP160
II	S-MART	transcript	360652	362514	.	-	.	seqedit=false;p_id=P2030;gene_id=YBR060C;tss_id=TSS5102;nbOverlaps=0;ID=YBR060C;Name=ORC2
XV	S-MART	transcript	118000	123268	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:10819:20066#0--HWUSI-EAS1656_0009_FC:3:27:8710:20300#0--HWUSI-EAS1656_000;p_id=P81;gene_id=YOL103W-B;tss_id=TSS406;nbOverlaps=103;ID=YOL103W-B;Name=YOL103W-B
XV	S-MART	exon	118000	119304	.	+	.	ID=YOL103W-B-exon1;Name=YOL103W-B-exon1;Parent=YOL103W-B
XV	S-MART	exon	119306	123268	.	+	.	ID=YOL103W-B-exon2;Name=YOL103W-B-exon2;Parent=YOL103W-B
II	S-MART	transcript	364787	365719	.	-	.	seqedit=false;p_id=P4948;gene_id=YBR061C;tss_id=TSS6559;nbOverlaps=0;ID=YBR061C;Name=TRM7
II	S-MART	transcript	368584	369678	.	-	.	seqedit=false;p_id=P4833;gene_id=YBR065C;tss_id=TSS2556;nbOverlaps=0;ID=YBR065C;Name=ECM2
XII	S-MART	transcript	705071	705412	.	-	.	seqedit=false;p_id=P530;gene_id=YLR282C;tss_id=TSS5663;nbOverlaps=0;ID=YLR282C;Name=YLR282C
X	S-MART	transcript	272827	274698	.	+	.	seqedit=false;p_id=P1126;gene_id=YJL085W;tss_id=TSS5532;nbOverlaps=0;ID=YJL085W;Name=EXO70
IV	S-MART	transcript	1510902	1511630	.	+	.	seqedit=false;p_id=P3637;gene_id=YDR538W;tss_id=TSS5605;nbOverlaps=0;ID=YDR538W;Name=PAD1
X	S-MART	transcript	270002	272485	.	-	.	seqedit=false;p_id=P3854;gene_id=YJL087C;tss_id=TSS1936;nbOverlaps=0;ID=YJL087C;Name=TRL1
II	S-MART	transcript	366970	368184	.	-	.	seqedit=false;p_id=P3649;gene_id=YBR063C;tss_id=TSS2597;nbOverlaps=0;ID=YBR063C;Name=YBR063C
II	S-MART	transcript	367763	368191	.	+	.	seqedit=false;p_id=P5846;gene_id=YBR064W;tss_id=TSS4270;nbOverlaps=0;ID=YBR064W;Name=YBR064W
II	S-MART	transcript	370037	370699	.	-	.	seqedit=false;p_id=P6567;gene_id=YBR066C;tss_id=TSS4191;nbOverlaps=0;ID=YBR066C;Name=NRG2
II	S-MART	transcript	372103	372735	.	-	.	seqedit=false;p_id=P2057;gene_id=YBR067C;tss_id=TSS1731;nbOverlaps=0;ID=YBR067C;Name=TIP1
XII	S-MART	transcript	710991	712058	.	-	.	seqedit=false;p_id=P2607;gene_id=YLR287C;tss_id=TSS542;nbOverlaps=0;ID=YLR287C;Name=YLR287C
III	S-MART	transcript	35865	37616	.	+	.	seqedit=false;p_id=P4720;gene_id=YCL051W;tss_id=TSS2610;nbOverlaps=0;ID=YCL051W;Name=LRE1
X	S-MART	transcript	257423	260947	.	+	.	seqedit=false;p_id=P3416;gene_id=YJL092W;tss_id=TSS4644;nbOverlaps=0;ID=YJL092W;Name=SRS2
X	S-MART	transcript	323386	324720	.	+	.	seqedit=false;p_id=P5076;gene_id=YJL060W;tss_id=TSS2739;nbOverlaps=0;ID=YJL060W;Name=BNA3
II	S-MART	transcript	379221	379934	.	-	.	seqedit=false;p_id=P3502;gene_id=YBR070C;tss_id=TSS589;nbOverlaps=0;ID=YBR070C;Name=ALG14
X	S-MART	transcript	251821	254442	.	-	.	seqedit=false;p_id=P4313;gene_id=YJL094C;tss_id=TSS703;nbOverlaps=0;ID=YJL094C;Name=KHA1
XII	S-MART	transcript	715089	717026	.	+	.	seqedit=false;p_id=P6319;gene_id=YLR289W;tss_id=TSS5572;nbOverlaps=0;ID=YLR289W;Name=GUF1
X	S-MART	transcript	246490	246975	.	+	.	seqedit=false;p_id=P6272;gene_id=YJL096W;tss_id=TSS4638;nbOverlaps=0;ID=YJL096W;Name=MRPL49
X	S-MART	transcript	245591	246244	.	+	.	seqedit=false;p_id=P1070;gene_id=YJL097W;tss_id=TSS1074;nbOverlaps=0;ID=YJL097W;Name=PHS1
IV	S-MART	transcript	1512094	1513605	.	+	.	seqedit=false;p_id=P5562;gene_id=YDR539W;tss_id=TSS1934;nbOverlaps=0;ID=YDR539W;Name=FDC1
XII	S-MART	transcript	719789	720370	.	-	.	seqedit=false;p_id=P3867;gene_id=YLR292C;tss_id=TSS2687;nbOverlaps=0;ID=YLR292C;Name=SEC72
X	S-MART	transcript	239414	241654	.	+	.	seqedit=false;p_id=P3434;gene_id=YJL099W;tss_id=TSS1741;nbOverlaps=0;ID=YJL099W;Name=CHS6
XV	S-MART	transcript	116396	117454	.	-	.	seqedit=false;p_id=P1921;gene_id=YOL104C;tss_id=TSS3143;nbOverlaps=0;ID=YOL104C;Name=NDJ1
II	S-MART	transcript	390227	391291	.	+	.	seqedit=false;p_id=P4975;gene_id=YBR076W;tss_id=TSS2202;nbOverlaps=0;ID=YBR076W;Name=ECM8
X	S-MART	transcript	234320	236356	.	-	.	seqedit=false;p_id=P5434;gene_id=YJL101C;tss_id=TSS517;nbOverlaps=0;ID=YJL101C;Name=GSH1
X	S-MART	transcript	231301	233760	.	+	.	seqedit=false;p_id=P15;gene_id=YJL102W;tss_id=TSS4899;nbOverlaps=0;ID=YJL102W;Name=MEF2
XII	S-MART	transcript	722978	723304	.	+	.	seqedit=false;p_id=P4566;gene_id=YLR296W;tss_id=TSS5525;nbOverlaps=0;ID=YLR296W;Name=YLR296W
III	S-MART	transcript	31449	33974	.	+	.	seqedit=false;p_id=P2386;gene_id=YCL054W;tss_id=TSS2948;nbOverlaps=0;ID=YCL054W;Name=SPB1
X	S-MART	transcript	227327	227776	.	+	.	seqedit=false;p_id=P4712;gene_id=YJL104W;tss_id=TSS656;nbOverlaps=0;ID=YJL104W;Name=PAM16
II	S-MART	transcript	395383	398277	.	-	.	seqedit=false;p_id=P5063;gene_id=YBR079C;tss_id=TSS4368;nbOverlaps=0;ID=YBR079C;Name=RPG1
XV	S-MART	transcript	114138	115808	.	-	.	seqedit=false;p_id=P3694;gene_id=YOL105C;tss_id=TSS4063;nbOverlaps=0;ID=YOL105C;Name=WSC3
X	S-MART	transcript	221390	223327	.	+	.	seqedit=false;p_id=P6683;gene_id=YJL106W;tss_id=TSS6714;nbOverlaps=0;ID=YJL106W;Name=IME2
X	S-MART	transcript	217705	218856	.	-	.	seqedit=false;p_id=P3584;gene_id=YJL108C;tss_id=TSS1959;nbOverlaps=0;ID=YJL108C;Name=PRM10
II	S-MART	transcript	406628	407169	.	-	.	seqedit=false;p_id=P4555;gene_id=YBR082C;tss_id=TSS6409;nbOverlaps=0;ID=YBR082C;Name=UBC4
II	S-MART	exon	406628	407027	.	-	.	ID=YBR082C-exon1;Name=UBC4-exon1;Parent=YBR082C
II	S-MART	exon	407123	407169	.	-	.	ID=YBR082C-exon2;Name=UBC4-exon2;Parent=YBR082C
X	S-MART	transcript	212000	217309	.	-	.	seqedit=false;p_id=P4443;gene_id=YJL109C;tss_id=TSS4590;nbOverlaps=0;ID=YJL109C;Name=UTP10
III	S-MART	transcript	27929	28936	.	+	.	seqedit=false;p_id=P3295;gene_id=YCL055W;tss_id=TSS4280;nbOverlaps=0;ID=YCL055W;Name=KAR4
XII	S-MART	transcript	732191	732553	.	-	.	seqedit=false;p_id=P2693;gene_id=YLR302C;tss_id=TSS1802;nbOverlaps=0;ID=YLR302C;Name=YLR302C
X	S-MART	transcript	207877	209529	.	+	.	seqedit=false;p_id=P6289;gene_id=YJL111W;tss_id=TSS5617;nbOverlaps=0;ID=YJL111W;Name=CCT7
XV	S-MART	transcript	111431	111886	.	-	.	seqedit=false;p_id=P50;gene_id=YOL108C;tss_id=TSS3144;nbOverlaps=0;ID=YOL108C;Name=INO4
X	S-MART	transcript	205305	207449	.	+	.	seqedit=false;p_id=P1035;gene_id=YJL112W;tss_id=TSS142;nbOverlaps=0;ID=YJL112W;Name=MDV1
X	S-MART	transcript	196287	197126	.	+	.	seqedit=false;p_id=P6176;gene_id=YJL115W;tss_id=TSS1103;nbOverlaps=0;ID=YJL115W;Name=ASF1
X	S-MART	transcript	198678	203325	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:19234:19292#0--HWUSI-EAS1656_0009_FC:3:29:6806:21385#0--HWUSI-EAS1656_0009;p_id=P5695;gene_id=YJL113W;tss_id=TSS2075;nbOverlaps=68;ID=YJL113W;Name=YJL113W
X	S-MART	exon	198678	198998	.	+	.	ID=YJL113W-exon1;Name=YJL113W-exon1;Parent=YJL113W
X	S-MART	exon	199000	203325	.	+	.	ID=YJL113W-exon2;Name=YJL113W-exon2;Parent=YJL113W
II	S-MART	transcript	411054	413981	.	+	.	seqedit=false;p_id=P2451;gene_id=YBR084W;tss_id=TSS3074;nbOverlaps=0;ID=YBR084W;Name=MIS1
IV	S-MART	transcript	1519664	1520698	.	-	.	seqedit=false;p_id=P1396;gene_id=YDR541C;tss_id=TSS1868;nbOverlaps=0;ID=YDR541C;Name=YDR541C
XII	S-MART	transcript	746848	747111	.	-	.	seqedit=false;p_id=P2055;gene_id=YLR307C-A;tss_id=TSS1556;nbOverlaps=0;ID=YLR307C-A;Name=YLR307C-A
X	S-MART	transcript	197915	198595	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:27:14818:2800#0--HWUSI-EAS1656_0009_FC:3:54:1846:12803#0--HWUSI-EAS1656_0009;p_id=P638;gene_id=YJL114W;tss_id=TSS1873;nbOverlaps=3;ID=YJL114W;Name=YJL114W
XV	S-MART	transcript	113226	113579	.	+	.	seqedit=false;p_id=P1522;gene_id=YOL106W;tss_id=TSS1968;nbOverlaps=0;ID=YOL106W;Name=YOL106W
II	S-MART	transcript	420201	423041	.	-	.	seqedit=false;p_id=P1902;gene_id=YBR086C;tss_id=TSS942;nbOverlaps=0;ID=YBR086C;Name=IST2
X	S-MART	transcript	192531	193466	.	+	.	seqedit=false;p_id=P3582;gene_id=YJL117W;tss_id=TSS5522;nbOverlaps=0;ID=YJL117W;Name=PHO86
X	S-MART	transcript	190374	191090	.	-	.	seqedit=false;p_id=P4403;gene_id=YJL121C;tss_id=TSS3496;nbOverlaps=0;ID=YJL121C;Name=RPE1
X	S-MART	transcript	191639	192298	.	+	.	seqedit=false;p_id=P3137;gene_id=YJL118W;tss_id=TSS4701;nbOverlaps=0;ID=YJL118W;Name=YJL118W
VII	S-MART	transcript	1027382	1027600	.	-	.	seqedit=false;p_id=P2949;gene_id=YGR270C-A;tss_id=TSS2097;nbOverlaps=0;ID=YGR270C-A;Name=YGR270C-A
X	S-MART	transcript	191572	191895	.	-	.	seqedit=false;p_id=P818;gene_id=YJL119C;tss_id=TSS5567;nbOverlaps=0;ID=YJL119C;Name=YJL119C
X	S-MART	transcript	320016	322157	.	+	.	seqedit=false;p_id=P2647;gene_id=YJL061W;tss_id=TSS1938;nbOverlaps=0;ID=YJL061W;Name=NUP82
II	S-MART	transcript	425183	425782	.	+	.	seqedit=false;p_id=P3390;gene_id=YBR089W;tss_id=TSS6919;nbOverlaps=0;ID=YBR089W;Name=YBR089W
XV	S-MART	transcript	112102	113130	.	+	.	seqedit=false;p_id=P1600;gene_id=YOL107W;tss_id=TSS5072;nbOverlaps=0;ID=YOL107W;Name=YOL107W
XII	S-MART	transcript	760750	762342	.	-	.	seqedit=false;p_id=P2380;gene_id=YLR313C;tss_id=TSS1669;nbOverlaps=0;ID=YLR313C;Name=SPH1
III	S-MART	transcript	23584	23925	.	+	.	seqedit=false;p_id=P1508;gene_id=YCL058W-A;tss_id=TSS923;nbOverlaps=0;ID=YCL058W-A;Name=ADF1
X	S-MART	transcript	188004	189440	.	-	.	seqedit=false;p_id=P1959;gene_id=YJL123C;tss_id=TSS3709;nbOverlaps=0;ID=YJL123C;Name=MTC1
X	S-MART	transcript	187126	187644	.	-	.	seqedit=false;p_id=P191;gene_id=YJL124C;tss_id=TSS5341;nbOverlaps=0;ID=YJL124C;Name=LSM1
X	S-MART	transcript	185528	186679	.	-	.	seqedit=false;p_id=P1689;gene_id=YJL125C;tss_id=TSS7019;nbOverlaps=0;ID=YJL125C;Name=GCD14
II	S-MART	transcript	646	1128	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P4303;gene_id=YBL113W-A;tss_id=TSS3939;nbOverlaps=61;ID=YBL113W-A;Name=YBL113W-A
X	S-MART	transcript	184501	185424	.	+	.	seqedit=false;p_id=P5257;gene_id=YJL126W;tss_id=TSS5682;nbOverlaps=0;ID=YJL126W;Name=NIT2
X	S-MART	transcript	182298	184220	.	-	.	seqedit=false;p_id=P2953;gene_id=YJL127C;tss_id=TSS5901;nbOverlaps=0;ID=YJL127C;Name=SPT10
XV	S-MART	transcript	110297	110638	.	+	.	seqedit=false;p_id=P409;gene_id=YOL109W;tss_id=TSS4522;nbOverlaps=0;ID=YOL109W;Name=ZEO1
X	S-MART	transcript	181551	181709	.	-	.	seqedit=false;p_id=P3492;gene_id=YJL127C-B;tss_id=TSS1328;nbOverlaps=0;ID=YJL127C-B;Name=YJL127C-B
X	S-MART	transcript	180194	180310	.	+	.	seqedit=false;p_id=P2252;gene_id=YJL127W-A;tss_id=TSS457;nbOverlaps=0;ID=YJL127W-A;Name=YJL127W-A
XV	S-MART	transcript	109176	109889	.	+	.	seqedit=false;p_id=P304;gene_id=YOL110W;tss_id=TSS509;nbOverlaps=0;ID=YOL110W;Name=SHR5
XV	S-MART	transcript	108258	108896	.	-	.	seqedit=false;p_id=P4331;gene_id=YOL111C;tss_id=TSS3711;nbOverlaps=0;ID=YOL111C;Name=MDY2
II	S-MART	transcript	266725	267336	.	-	.	seqedit=false;p_id=P5593;gene_id=YBR014C;tss_id=TSS6447;nbOverlaps=0;ID=YBR014C;Name=GRX7
XV	S-MART	transcript	106710	108188	.	+	.	seqedit=false;p_id=P5749;gene_id=YOL112W;tss_id=TSS2356;nbOverlaps=0;ID=YOL112W;Name=MSB4
VII	S-MART	transcript	328583	328654	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)G1;tss_id=TSS2965;nbOverlaps=1946;ID=tE(UUC)G1;Name=SOE1
XV	S-MART	transcript	104326	106293	.	+	.	seqedit=false;p_id=P4788;gene_id=YOL113W;tss_id=TSS3538;nbOverlaps=0;ID=YOL113W;Name=SKM1
XV	S-MART	transcript	101475	103229	.	+	.	seqedit=false;p_id=P4134;gene_id=YOL115W;tss_id=TSS2875;nbOverlaps=0;ID=YOL115W;Name=PAP2
XV	S-MART	transcript	103317	103925	.	-	.	seqedit=false;p_id=P851;gene_id=YOL114C;tss_id=TSS5432;nbOverlaps=0;ID=YOL114C;Name=YOL114C
XV	S-MART	transcript	99809	100957	.	+	.	seqedit=false;p_id=P1768;gene_id=YOL116W;tss_id=TSS4909;nbOverlaps=0;ID=YOL116W;Name=MSN1
XV	S-MART	transcript	97551	99488	.	+	.	seqedit=false;p_id=P3154;gene_id=YOL117W;tss_id=TSS4367;nbOverlaps=0;ID=YOL117W;Name=RRI2
VII	S-MART	transcript	401527	401598	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)G2;tss_id=TSS985;nbOverlaps=1957;ID=tE(UUC)G2;Name=tE(UUC)G2
II	S-MART	transcript	436021	436713	.	+	.	seqedit=false;p_id=P992;gene_id=YBR096W;tss_id=TSS1330;nbOverlaps=0;ID=YBR096W;Name=YBR096W
II	S-MART	transcript	441515	443590	.	+	.	seqedit=false;p_id=P2602;gene_id=YBR098W;tss_id=TSS3790;nbOverlaps=0;ID=YBR098W;Name=MMS4
II	S-MART	transcript	443821	444693	.	-	.	seqedit=false;p_id=P5194;gene_id=YBR101C;tss_id=TSS3525;nbOverlaps=0;ID=YBR101C;Name=FES1
II	S-MART	transcript	442924	443307	.	-	.	seqedit=false;p_id=P3541;gene_id=YBR099C;tss_id=TSS2106;nbOverlaps=0;ID=YBR099C;Name=YBR099C
II	S-MART	transcript	445062	447323	.	-	.	seqedit=false;p_id=P5372;gene_id=YBR102C;tss_id=TSS6094;nbOverlaps=0;ID=YBR102C;Name=EXO84
II	S-MART	transcript	449320	449463	.	-	.	seqedit=false;p_id=P1366;gene_id=YBR103C-A;tss_id=TSS6604;nbOverlaps=0;ID=YBR103C-A;Name=YBR103C-A
II	S-MART	transcript	447709	449316	.	+	.	seqedit=false;p_id=P2907;gene_id=YBR103W;tss_id=TSS3613;nbOverlaps=0;ID=YBR103W;Name=SIF2
II	S-MART	transcript	449667	450656	.	+	.	seqedit=false;p_id=P1883;gene_id=YBR104W;tss_id=TSS1445;nbOverlaps=0;ID=YBR104W;Name=YMC2
II	S-MART	transcript	450881	451969	.	-	.	seqedit=false;p_id=P1358;gene_id=YBR105C;tss_id=TSS3949;nbOverlaps=0;ID=YBR105C;Name=VID24
II	S-MART	transcript	452658	453224	.	+	.	seqedit=false;p_id=P69;gene_id=YBR106W;tss_id=TSS882;nbOverlaps=0;ID=YBR106W;Name=PHO88
II	S-MART	transcript	453793	454530	.	-	.	seqedit=false;p_id=P6478;gene_id=YBR107C;tss_id=TSS2691;nbOverlaps=0;ID=YBR107C;Name=IML3
II	S-MART	transcript	454822	457665	.	+	.	seqedit=false;p_id=P1197;gene_id=YBR108W;tss_id=TSS78;nbOverlaps=0;ID=YBR108W;Name=AIM3
II	S-MART	transcript	457919	458362	.	-	.	seqedit=false;p_id=P524;gene_id=YBR109C;tss_id=TSS260;nbOverlaps=0;ID=YBR109C;Name=CMD1
II	S-MART	transcript	458608	458832	.	+	.	seqedit=false;p_id=P172;gene_id=YBR109W-A;tss_id=TSS1551;nbOverlaps=0;ID=YBR109W-A;Name=YBR109W-A
II	S-MART	transcript	458872	460221	.	+	.	seqedit=false;p_id=P4397;gene_id=YBR110W;tss_id=TSS2224;nbOverlaps=0;ID=YBR110W;Name=ALG1
II	S-MART	transcript	461178	461873	.	-	.	seqedit=false;p_id=P1724;gene_id=YBR111C;tss_id=TSS1375;nbOverlaps=0;ID=YBR111C;Name=YSA1
II	S-MART	transcript	462139	462579	.	+	.	seqedit=false;p_id=P2713;gene_id=YBR111W-A;tss_id=TSS2944;nbOverlaps=0;ID=YBR111W-A;Name=SUS1
II	S-MART	exon	462139	462209	.	+	.	ID=YBR111W-A-exon1;Name=SUS1-exon1;Parent=YBR111W-A
II	S-MART	exon	462290	462429	.	+	.	ID=YBR111W-A-exon2;Name=SUS1-exon2;Parent=YBR111W-A
II	S-MART	exon	462500	462579	.	+	.	ID=YBR111W-A-exon3;Name=SUS1-exon3;Parent=YBR111W-A
XV	S-MART	transcript	92026	92850	.	-	.	seqedit=false;p_id=P5436;gene_id=YOL121C;tss_id=TSS3660;nbOverlaps=0;ID=YOL121C;Name=RPS19A
XV	S-MART	exon	92026	92440	.	-	.	ID=YOL121C-exon1;Name=RPS19A-exon1;Parent=YOL121C
XV	S-MART	exon	92831	92850	.	-	.	ID=YOL121C-exon2;Name=RPS19A-exon2;Parent=YOL121C
XIV	S-MART	transcript	723356	724306	.	-	.	seqedit=false;p_id=P17;gene_id=YNR054C;tss_id=TSS2936;nbOverlaps=0;ID=YNR054C;Name=ESF2
XIV	S-MART	transcript	728426	730186	.	-	.	seqedit=false;p_id=P2773;gene_id=YNR055C;tss_id=TSS4875;nbOverlaps=0;ID=YNR055C;Name=HOL1
XIV	S-MART	transcript	731618	733303	.	-	.	seqedit=false;p_id=P2886;gene_id=YNR056C;tss_id=TSS4626;nbOverlaps=0;ID=YNR056C;Name=BIO5
II	S-MART	transcript	462870	465770	.	-	.	seqedit=false;p_id=P1472;gene_id=YBR112C;tss_id=TSS5380;nbOverlaps=0;ID=YBR112C;Name=CYC8
II	S-MART	transcript	467248	469620	.	+	.	seqedit=false;p_id=P1999;gene_id=YBR114W;tss_id=TSS7070;nbOverlaps=0;ID=YBR114W;Name=RAD16
II	S-MART	transcript	465566	466048	.	+	.	seqedit=false;p_id=P5242;gene_id=YBR113W;tss_id=TSS4645;nbOverlaps=0;ID=YBR113W;Name=YBR113W
II	S-MART	transcript	469748	473926	.	-	.	seqedit=false;p_id=P103;gene_id=YBR115C;tss_id=TSS1646;nbOverlaps=0;ID=YBR115C;Name=LYS2
II	S-MART	transcript	474392	476437	.	-	.	seqedit=false;p_id=P1519;gene_id=YBR117C;tss_id=TSS3017;nbOverlaps=0;ID=YBR117C;Name=TKL2
II	S-MART	transcript	474199	474726	.	-	.	seqedit=false;p_id=P2013;gene_id=YBR116C;tss_id=TSS6825;nbOverlaps=0;ID=YBR116C;Name=YBR116C
II	S-MART	transcript	477671	479047	.	+	.	seqedit=false;p_id=P5996;gene_id=YBR118W;tss_id=TSS3152;nbOverlaps=0;ID=YBR118W;Name=TEF2
II	S-MART	transcript	479338	480323	.	+	.	seqedit=false;p_id=P6600;gene_id=YBR119W;tss_id=TSS4717;nbOverlaps=0;ID=YBR119W;Name=MUD1
II	S-MART	exon	479338	479345	.	+	.	ID=YBR119W-exon1;Name=MUD1-exon1;Parent=YBR119W
II	S-MART	exon	479435	480323	.	+	.	ID=YBR119W-exon2;Name=MUD1-exon2;Parent=YBR119W
XIV	S-MART	transcript	749136	750008	.	-	.	seqedit=false;p_id=P947;gene_id=YNR064C;tss_id=TSS2542;nbOverlaps=0;ID=YNR064C;Name=YNR064C
XIV	S-MART	transcript	750350	753700	.	-	.	seqedit=false;p_id=P5604;gene_id=YNR065C;tss_id=TSS1019;nbOverlaps=0;ID=YNR065C;Name=YNR065C
II	S-MART	transcript	480435	480923	.	-	.	seqedit=false;p_id=P4455;gene_id=YBR120C;tss_id=TSS120;nbOverlaps=0;ID=YBR120C;Name=CBP6
II	S-MART	transcript	481364	483367	.	-	.	seqedit=false;p_id=P5056;gene_id=YBR121C;tss_id=TSS2914;nbOverlaps=0;ID=YBR121C;Name=GRS1
II	S-MART	transcript	482326	482484	.	-	.	seqedit=false;p_id=P5127;gene_id=YBR121C-A;tss_id=TSS508;nbOverlaps=0;ID=YBR121C-A;Name=YBR121C-A
II	S-MART	transcript	483970	484503	.	-	.	seqedit=false;p_id=P2446;gene_id=YBR122C;tss_id=TSS2477;nbOverlaps=0;ID=YBR122C;Name=MRPL36
II	S-MART	transcript	484742	486691	.	-	.	seqedit=false;p_id=P1354;gene_id=YBR123C;tss_id=TSS2738;nbOverlaps=0;ID=YBR123C;Name=TFC1
XV	S-MART	transcript	89692	91419	.	-	.	seqedit=false;p_id=P5997;gene_id=YOL122C;tss_id=TSS5569;nbOverlaps=0;ID=YOL122C;Name=SMF1
II	S-MART	transcript	487199	488380	.	-	.	seqedit=false;p_id=P5113;gene_id=YBR125C;tss_id=TSS2219;nbOverlaps=0;ID=YBR125C;Name=PTC4
II	S-MART	transcript	486507	486866	.	+	.	seqedit=false;p_id=P6576;gene_id=YBR124W;tss_id=TSS5367;nbOverlaps=0;ID=YBR124W;Name=YBR124W
II	S-MART	transcript	488905	490392	.	-	.	seqedit=false;p_id=P4536;gene_id=YBR126C;tss_id=TSS3103;nbOverlaps=0;ID=YBR126C;Name=TPS1
II	S-MART	transcript	490850	491056	.	+	.	seqedit=false;p_id=P6562;gene_id=YBR126W-A;tss_id=TSS4388;nbOverlaps=0;ID=YBR126W-A;Name=YBR126W-A
II	S-MART	transcript	490927	491070	.	+	.	seqedit=false;p_id=P5494;gene_id=YBR126W-B;tss_id=TSS4459;nbOverlaps=0;ID=YBR126W-B;Name=YBR126W-B
II	S-MART	transcript	491269	492822	.	-	.	seqedit=false;p_id=P2317;gene_id=YBR127C;tss_id=TSS219;nbOverlaps=0;ID=YBR127C;Name=VMA2
XV	S-MART	transcript	87844	89448	.	+	.	seqedit=false;p_id=P4615;gene_id=YOL123W;tss_id=TSS3142;nbOverlaps=0;ID=YOL123W;Name=HRP1
II	S-MART	transcript	493081	494115	.	-	.	seqedit=false;p_id=P4909;gene_id=YBR128C;tss_id=TSS5966;nbOverlaps=0;ID=YBR128C;Name=ATG14
II	S-MART	transcript	494353	495339	.	-	.	seqedit=false;p_id=P978;gene_id=YBR129C;tss_id=TSS645;nbOverlaps=0;ID=YBR129C;Name=OPY1
II	S-MART	transcript	495592	496869	.	-	.	seqedit=false;p_id=P1574;gene_id=YBR130C;tss_id=TSS581;nbOverlaps=0;ID=YBR130C;Name=SHE3
II	S-MART	transcript	497650	497739	.	-	.	seqedit=false;p_id=P4475;gene_id=YBR131C-A;tss_id=TSS6646;nbOverlaps=0;ID=YBR131C-A;Name=YBR131C-A
II	S-MART	transcript	497163	499277	.	+	.	seqedit=false;p_id=P3101;gene_id=YBR131W;tss_id=TSS3990;nbOverlaps=0;ID=YBR131W;Name=CCZ1
II	S-MART	transcript	499652	501442	.	-	.	seqedit=false;p_id=P874;gene_id=YBR132C;tss_id=TSS4869;nbOverlaps=0;ID=YBR132C;Name=AGP2
XV	S-MART	transcript	85456	86757	.	-	.	seqedit=false;p_id=P2736;gene_id=YOL124C;tss_id=TSS6421;nbOverlaps=0;ID=YOL124C;Name=TRM11
II	S-MART	transcript	501804	504287	.	-	.	seqedit=false;p_id=P6335;gene_id=YBR133C;tss_id=TSS879;nbOverlaps=0;ID=YBR133C;Name=HSL7
II	S-MART	transcript	504854	505306	.	+	.	seqedit=false;p_id=P274;gene_id=YBR135W;tss_id=TSS4342;nbOverlaps=0;ID=YBR135W;Name=CKS1
II	S-MART	transcript	504243	504644	.	+	.	seqedit=false;p_id=P329;gene_id=YBR134W;tss_id=TSS2954;nbOverlaps=0;ID=YBR134W;Name=YBR134W
II	S-MART	transcript	505668	512774	.	+	.	seqedit=false;p_id=P4327;gene_id=YBR136W;tss_id=TSS1426;nbOverlaps=0;ID=YBR136W;Name=MEC1
II	S-MART	transcript	517350	526628	.	-	.	seqedit=false;p_id=P189;gene_id=YBR140C;tss_id=TSS1702;nbOverlaps=0;ID=YBR140C;Name=IRA1
II	S-MART	transcript	513044	513583	.	+	.	seqedit=false;p_id=P737;gene_id=YBR137W;tss_id=TSS225;nbOverlaps=0;ID=YBR137W;Name=YBR137W
XV	S-MART	transcript	83834	85264	.	+	.	seqedit=false;p_id=P987;gene_id=YOL125W;tss_id=TSS5568;nbOverlaps=0;ID=YOL125W;Name=TRM13
II	S-MART	transcript	513762	515336	.	-	.	seqedit=false;p_id=P2541;gene_id=YBR138C;tss_id=TSS4434;nbOverlaps=0;ID=YBR138C;Name=YBR138C
II	S-MART	transcript	515664	517190	.	+	.	seqedit=false;p_id=P4385;gene_id=YBR139W;tss_id=TSS4060;nbOverlaps=0;ID=YBR139W;Name=YBR139W
II	S-MART	transcript	527167	527262	.	+	.	seqedit=false;p_id=P2197;gene_id=YBR141W-A;tss_id=TSS540;nbOverlaps=0;ID=YBR141W-A;Name=YBR141W-A
II	S-MART	transcript	527025	528038	.	-	.	seqedit=false;p_id=P5738;gene_id=YBR141C;tss_id=TSS6599;nbOverlaps=0;ID=YBR141C;Name=YBR141C
II	S-MART	transcript	528317	530638	.	+	.	seqedit=false;p_id=P4687;gene_id=YBR142W;tss_id=TSS287;nbOverlaps=0;ID=YBR142W;Name=MAK5
II	S-MART	transcript	530869	532182	.	-	.	seqedit=false;p_id=P5077;gene_id=YBR143C;tss_id=TSS892;nbOverlaps=0;ID=YBR143C;Name=SUP45
XV	S-MART	transcript	81787	82920	.	-	.	seqedit=false;p_id=P2772;gene_id=YOL126C;tss_id=TSS654;nbOverlaps=0;ID=YOL126C;Name=MDH2
II	S-MART	transcript	533762	534817	.	+	.	seqedit=false;p_id=P4021;gene_id=YBR145W;tss_id=TSS4021;nbOverlaps=0;ID=YBR145W;Name=ADH5
II	S-MART	transcript	533235	533549	.	-	.	seqedit=false;p_id=P314;gene_id=YBR144C;tss_id=TSS1856;nbOverlaps=0;ID=YBR144C;Name=YBR144C
II	S-MART	transcript	535260	536096	.	+	.	seqedit=false;p_id=P1507;gene_id=YBR146W;tss_id=TSS3089;nbOverlaps=0;ID=YBR146W;Name=MRPS9
II	S-MART	transcript	536575	537465	.	+	.	seqedit=false;p_id=P5545;gene_id=YBR147W;tss_id=TSS1742;nbOverlaps=0;ID=YBR147W;Name=RTC2
IX	S-MART	transcript	370417	370488	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)I;tss_id=TSS367;nbOverlaps=1950;ID=tE(UUC)I;Name=tE(UUC)I
II	S-MART	transcript	274427	275527	.	-	.	seqedit=false;p_id=P3986;gene_id=YBR018C;tss_id=TSS759;nbOverlaps=0;ID=YBR018C;Name=GAL7
X	S-MART	transcript	115939	116010	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)J;tss_id=TSS678;nbOverlaps=1953;ID=tE(UUC)J;Name=tE(UUC)J
XV	S-MART	transcript	681444	682106	.	-	.	seqedit=false;p_id=P4912;gene_id=YOR185C;tss_id=TSS1440;nbOverlaps=0;ID=YOR185C;Name=GSP2
II	S-MART	transcript	276253	278352	.	-	.	seqedit=false;p_id=P6297;gene_id=YBR019C;tss_id=TSS28;nbOverlaps=0;ID=YBR019C;Name=GAL10
XV	S-MART	transcript	683329	683538	.	-	.	seqedit=false;p_id=P2982;gene_id=YOR186C-A;tss_id=TSS3305;nbOverlaps=0;ID=YOR186C-A;Name=YOR186C-A
XV	S-MART	transcript	684030	685343	.	+	.	seqedit=false;p_id=P2343;gene_id=YOR187W;tss_id=TSS4395;nbOverlaps=0;ID=YOR187W;Name=TUF1
XV	S-MART	transcript	683111	683545	.	+	.	seqedit=false;p_id=P21;gene_id=YOR186W;tss_id=TSS3013;nbOverlaps=0;ID=YOR186W;Name=YOR186W
XV	S-MART	transcript	685767	689180	.	+	.	seqedit=false;p_id=P4326;gene_id=YOR188W;tss_id=TSS3705;nbOverlaps=0;ID=YOR188W;Name=MSB1
XI	S-MART	transcript	141018	141089	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)K;tss_id=TSS967;nbOverlaps=1946;ID=tE(UUC)K;Name=tE(UUC)K
XV	S-MART	transcript	689624	689974	.	+	.	seqedit=false;p_id=P5408;gene_id=YOR189W;tss_id=TSS766;nbOverlaps=0;ID=YOR189W;Name=IES4
XV	S-MART	transcript	690695	692032	.	+	.	seqedit=false;p_id=P4602;gene_id=YOR190W;tss_id=TSS5930;nbOverlaps=0;ID=YOR190W;Name=SPR1
XI	S-MART	transcript	169207	171129	.	-	.	seqedit=false;p_id=P1408;gene_id=YKL148C;tss_id=TSS207;nbOverlaps=0;ID=YKL148C;Name=SDH1
XV	S-MART	transcript	692475	697334	.	+	.	seqedit=false;p_id=P4139;gene_id=YOR191W;tss_id=TSS1322;nbOverlaps=0;ID=YOR191W;Name=ULS1
XV	S-MART	transcript	698768	700567	.	-	.	seqedit=false;p_id=P460;gene_id=YOR192C;tss_id=TSS3346;nbOverlaps=0;ID=YOR192C;Name=THI72
XV	S-MART	transcript	708416	709732	.	-	.	seqedit=false;p_id=P1874;gene_id=YOR192C-A;tss_id=TSS2088;nbOverlaps=0;ID=YOR192C-A;Name=YOR192C-A
XV	S-MART	transcript	704419	709732	.	-	.	seqedit=false;p_id=P4318;gene_id=YOR192C-B;tss_id=TSS2088;nbOverlaps=0;ID=YOR192C-B;Name=YOR192C-B
XV	S-MART	exon	704419	708438	.	-	.	ID=YOR192C-B-exon1;Name=YOR192C-B-exon1;Parent=YOR192C-B
XV	S-MART	exon	708440	709732	.	-	.	ID=YOR192C-B-exon2;Name=YOR192C-B-exon2;Parent=YOR192C-B
XV	S-MART	transcript	892731	894092	.	-	.	seqedit=false;p_id=P4980;gene_id=YOR307C;tss_id=TSS852;nbOverlaps=0;ID=YOR307C;Name=SLY41
XV	S-MART	transcript	894624	896387	.	-	.	seqedit=false;p_id=P6434;gene_id=YOR308C;tss_id=TSS2089;nbOverlaps=0;ID=YOR308C;Name=SNU66
XV	S-MART	transcript	703988	704224	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:90:6311:21229#0--HWUSI-EAS1656_0009_FC:3:8:18249:7755#0--HWUSI-EAS1656_0009_;p_id=P694;gene_id=YOR192C-C;tss_id=TSS843;nbOverlaps=6;ID=YOR192C-C;Name=YOR192C-C
XV	S-MART	transcript	710446	711576	.	+	.	seqedit=false;p_id=P176;gene_id=YOR193W;tss_id=TSS2657;nbOverlaps=0;ID=YOR193W;Name=PEX27
XV	S-MART	transcript	711683	712543	.	-	.	seqedit=false;p_id=P3364;gene_id=YOR194C;tss_id=TSS514;nbOverlaps=0;ID=YOR194C;Name=TOA1
XV	S-MART	transcript	712866	715331	.	+	.	seqedit=false;p_id=P926;gene_id=YOR195W;tss_id=TSS1093;nbOverlaps=0;ID=YOR195W;Name=SLK19
XV	S-MART	transcript	715593	716837	.	-	.	seqedit=false;p_id=P3237;gene_id=YOR196C;tss_id=TSS2736;nbOverlaps=0;ID=YOR196C;Name=LIP5
XV	S-MART	transcript	717086	718384	.	+	.	seqedit=false;p_id=P4120;gene_id=YOR197W;tss_id=TSS3056;nbOverlaps=0;ID=YOR197W;Name=MCA1
XV	S-MART	transcript	718653	720065	.	-	.	seqedit=false;p_id=P1846;gene_id=YOR198C;tss_id=TSS4722;nbOverlaps=0;ID=YOR198C;Name=BFR1
XV	S-MART	transcript	720470	721708	.	-	.	seqedit=false;p_id=P2610;gene_id=YOR201C;tss_id=TSS1306;nbOverlaps=0;ID=YOR201C;Name=MRM1
XV	S-MART	transcript	720181	720510	.	+	.	seqedit=false;p_id=P3656;gene_id=YOR199W;tss_id=TSS4891;nbOverlaps=0;ID=YOR199W;Name=YOR199W
XV	S-MART	transcript	720417	720815	.	+	.	seqedit=false;p_id=P1348;gene_id=YOR200W;tss_id=TSS5377;nbOverlaps=0;ID=YOR200W;Name=YOR200W
XV	S-MART	transcript	721946	722608	.	+	.	seqedit=false;p_id=P6548;gene_id=YOR202W;tss_id=TSS2855;nbOverlaps=0;ID=YOR202W;Name=HIS3
XV	S-MART	transcript	722911	724725	.	+	.	seqedit=false;p_id=P6483;gene_id=YOR204W;tss_id=TSS1503;nbOverlaps=0;ID=YOR204W;Name=DED1
XV	S-MART	transcript	722565	722918	.	+	.	seqedit=false;p_id=P940;gene_id=YOR203W;tss_id=TSS6631;nbOverlaps=0;ID=YOR203W;Name=YOR203W
XV	S-MART	transcript	725564	727234	.	-	.	seqedit=false;p_id=P923;gene_id=YOR205C;tss_id=TSS1472;nbOverlaps=0;ID=YOR205C;Name=GEP3
XIV	S-MART	transcript	456565	457143	.	+	.	seqedit=false;p_id=P5853;gene_id=YNL090W;tss_id=TSS1281;nbOverlaps=0;ID=YNL090W;Name=RHO2
XV	S-MART	transcript	727512	729644	.	+	.	seqedit=false;p_id=P431;gene_id=YOR206W;tss_id=TSS3133;nbOverlaps=0;ID=YOR206W;Name=NOC2
XV	S-MART	transcript	730008	733457	.	-	.	seqedit=false;p_id=P1022;gene_id=YOR207C;tss_id=TSS3455;nbOverlaps=0;ID=YOR207C;Name=RET1
XV	S-MART	transcript	733925	736177	.	+	.	seqedit=false;p_id=P1757;gene_id=YOR208W;tss_id=TSS1295;nbOverlaps=0;ID=YOR208W;Name=PTP2
XV	S-MART	transcript	736437	737726	.	-	.	seqedit=false;p_id=P6395;gene_id=YOR209C;tss_id=TSS5411;nbOverlaps=0;ID=YOR209C;Name=NPT1
II	S-MART	transcript	279021	280607	.	+	.	seqedit=false;p_id=P79;gene_id=YBR020W;tss_id=TSS6642;nbOverlaps=0;ID=YBR020W;Name=GAL1
XV	S-MART	transcript	738320	738532	.	+	.	seqedit=false;p_id=P1382;gene_id=YOR210W;tss_id=TSS2391;nbOverlaps=0;ID=YOR210W;Name=RPB10
XV	S-MART	transcript	738924	741569	.	-	.	seqedit=false;p_id=P5007;gene_id=YOR211C;tss_id=TSS6872;nbOverlaps=0;ID=YOR211C;Name=MGM1
XV	S-MART	transcript	742910	744181	.	+	.	seqedit=false;p_id=P5930;gene_id=YOR212W;tss_id=TSS822;nbOverlaps=0;ID=YOR212W;Name=STE4
XV	S-MART	transcript	744535	745281	.	-	.	seqedit=false;p_id=P6322;gene_id=YOR213C;tss_id=TSS4310;nbOverlaps=0;ID=YOR213C;Name=SAS5
XII	S-MART	transcript	797178	797249	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)L;tss_id=TSS3248;nbOverlaps=1947;ID=tE(UUC)L;Name=tE(UUC)L
XV	S-MART	transcript	746725	747282	.	-	.	seqedit=false;p_id=P153;gene_id=YOR215C;tss_id=TSS2506;nbOverlaps=0;ID=YOR215C;Name=AIM41
XV	S-MART	transcript	745593	746303	.	-	.	seqedit=false;p_id=P5518;gene_id=YOR214C;tss_id=TSS5473;nbOverlaps=0;ID=YOR214C;Name=YOR214C
XI	S-MART	transcript	171551	172168	.	-	.	seqedit=false;p_id=P6520;gene_id=YKL147C;tss_id=TSS4607;nbOverlaps=0;ID=YKL147C;Name=YKL147C
XV	S-MART	transcript	747525	748979	.	-	.	seqedit=false;p_id=P3024;gene_id=YOR216C;tss_id=TSS6956;nbOverlaps=0;ID=YOR216C;Name=RUD3
XV	S-MART	transcript	749301	751886	.	+	.	seqedit=false;p_id=P631;gene_id=YOR217W;tss_id=TSS674;nbOverlaps=0;ID=YOR217W;Name=RFC1
XV	S-MART	transcript	752214	755009	.	-	.	seqedit=false;p_id=P1692;gene_id=YOR219C;tss_id=TSS2560;nbOverlaps=0;ID=YOR219C;Name=STE13
XV	S-MART	transcript	751476	751895	.	-	.	seqedit=false;p_id=P4635;gene_id=YOR218C;tss_id=TSS3487;nbOverlaps=0;ID=YOR218C;Name=YOR218C
XV	S-MART	transcript	755328	756125	.	+	.	seqedit=false;p_id=P4772;gene_id=YOR220W;tss_id=TSS6661;nbOverlaps=0;ID=YOR220W;Name=RCN2
XV	S-MART	transcript	756476	757558	.	-	.	seqedit=false;p_id=P5442;gene_id=YOR221C;tss_id=TSS5087;nbOverlaps=0;ID=YOR221C;Name=MCT1
XV	S-MART	transcript	758330	759253	.	+	.	seqedit=false;p_id=P3155;gene_id=YOR222W;tss_id=TSS4761;nbOverlaps=0;ID=YOR222W;Name=ODC2
XV	S-MART	transcript	760825	761265	.	-	.	seqedit=false;p_id=P950;gene_id=YOR224C;tss_id=TSS5783;nbOverlaps=0;ID=YOR224C;Name=RPB8
XV	S-MART	transcript	759782	760660	.	+	.	seqedit=false;p_id=P3601;gene_id=YOR223W;tss_id=TSS6692;nbOverlaps=0;ID=YOR223W;Name=YOR223W
XVI	S-MART	transcript	843262	844020	.	+	.	seqedit=false;p_id=P2273;gene_id=YPR158W;tss_id=TSS6775;nbOverlaps=0;ID=YPR158W;Name=CUR1
XV	S-MART	transcript	761614	762084	.	-	.	seqedit=false;p_id=P3033;gene_id=YOR226C;tss_id=TSS6803;nbOverlaps=0;ID=YOR226C;Name=ISU2
XV	S-MART	transcript	761392	761721	.	+	.	seqedit=false;p_id=P1969;gene_id=YOR225W;tss_id=TSS524;nbOverlaps=0;ID=YOR225W;Name=YOR225W
XV	S-MART	transcript	762825	766565	.	+	.	seqedit=false;p_id=P3900;gene_id=YOR227W;tss_id=TSS4307;nbOverlaps=0;ID=YOR227W;Name=HER1
XV	S-MART	transcript	768409	769812	.	+	.	seqedit=false;p_id=P6641;gene_id=YOR229W;tss_id=TSS4484;nbOverlaps=0;ID=YOR229W;Name=WTM2
XV	S-MART	transcript	766869	767777	.	-	.	seqedit=false;p_id=P1423;gene_id=YOR228C;tss_id=TSS5395;nbOverlaps=0;ID=YOR228C;Name=YOR228C
XV	S-MART	transcript	770800	772113	.	+	.	seqedit=false;p_id=P928;gene_id=YOR230W;tss_id=TSS638;nbOverlaps=0;ID=YOR230W;Name=WTM1
XV	S-MART	transcript	773163	773363	.	-	.	seqedit=false;p_id=P5475;gene_id=YOR231C-A;tss_id=TSS4447;nbOverlaps=0;ID=YOR231C-A;Name=YOR231C-A
XV	S-MART	transcript	772601	774127	.	+	.	seqedit=false;p_id=P3773;gene_id=YOR231W;tss_id=TSS2545;nbOverlaps=0;ID=YOR231W;Name=MKK1
XV	S-MART	transcript	774573	775259	.	+	.	seqedit=false;p_id=P463;gene_id=YOR232W;tss_id=TSS5018;nbOverlaps=0;ID=YOR232W;Name=MGE1
XV	S-MART	transcript	775846	778248	.	+	.	seqedit=false;p_id=P5034;gene_id=YOR233W;tss_id=TSS323;nbOverlaps=0;ID=YOR233W;Name=KIN4
XV	S-MART	transcript	778555	779405	.	-	.	seqedit=false;p_id=P5822;gene_id=YOR234C;tss_id=TSS6314;nbOverlaps=0;ID=YOR234C;Name=RPL33B
XV	S-MART	exon	778555	778859	.	-	.	ID=YOR234C-exon1;Name=RPL33B-exon1;Parent=YOR234C
XV	S-MART	exon	779387	779405	.	-	.	ID=YOR234C-exon2;Name=RPL33B-exon2;Parent=YOR234C
XV	S-MART	transcript	970578	975891	.	+	.	seqedit=false;p_id=P1696;gene_id=YOR343W-B;tss_id=TSS4033;nbOverlaps=0;ID=YOR343W-B;Name=YOR343W-B
XV	S-MART	exon	970578	971871	.	+	.	ID=YOR343W-B-exon1;Name=YOR343W-B-exon1;Parent=YOR343W-B
XV	S-MART	exon	971873	975891	.	+	.	ID=YOR343W-B-exon2;Name=YOR343W-B-exon2;Parent=YOR343W-B
XV	S-MART	transcript	779870	780184	.	+	.	seqedit=false;p_id=P6610;gene_id=YOR235W;tss_id=TSS403;nbOverlaps=0;ID=YOR235W;Name=IRC13
XV	S-MART	transcript	780906	781541	.	+	.	seqedit=false;p_id=P2667;gene_id=YOR236W;tss_id=TSS6723;nbOverlaps=0;ID=YOR236W;Name=DFR1
XV	S-MART	transcript	781994	783298	.	+	.	seqedit=false;p_id=P2139;gene_id=YOR237W;tss_id=TSS6828;nbOverlaps=0;ID=YOR237W;Name=HES1
XV	S-MART	transcript	874743	875321	.	-	.	seqedit=false;p_id=P5245;gene_id=YOR297C;tss_id=TSS6607;nbOverlaps=0;ID=YOR297C;Name=TIM18
XIII	S-MART	transcript	290801	290872	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)M;tss_id=TSS6993;nbOverlaps=1858;ID=tE(UUC)M;Name=tE(UUC)M
XI	S-MART	transcript	167612	168829	.	-	.	seqedit=false;p_id=P4850;gene_id=YKL149C;tss_id=TSS7060;nbOverlaps=0;ID=YKL149C;Name=DBR1
III	S-MART	transcript	11503	12285	.	-	.	seqedit=false;p_id=P393;gene_id=YCL068C;tss_id=TSS4554;nbOverlaps=0;ID=YCL068C;Name=YCL068C
XIV	S-MART	transcript	697614	699431	.	-	.	seqedit=false;p_id=P4118;gene_id=YNR039C;tss_id=TSS1232;nbOverlaps=0;ID=YNR039C;Name=ZRG17
XVI	S-MART	transcript	844709	846031	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P5147;gene_id=YPR158W-A;tss_id=TSS902;nbOverlaps=12;ID=YPR158W-A;Name=YPR158W-A
XIV	S-MART	transcript	700541	701659	.	-	.	seqedit=false;p_id=P4248;gene_id=YNR041C;tss_id=TSS4928;nbOverlaps=0;ID=YNR041C;Name=COQ2
IV	S-MART	transcript	1496165	1496548	.	-	.	seqedit=false;p_id=P6667;gene_id=YDR529C;tss_id=TSS6759;nbOverlaps=0;ID=YDR529C;Name=QCR7
XIV	S-MART	transcript	699690	700460	.	+	.	seqedit=false;p_id=P6590;gene_id=YNR040W;tss_id=TSS2245;nbOverlaps=0;ID=YNR040W;Name=YNR040W
XIV	S-MART	transcript	701895	703085	.	+	.	seqedit=false;p_id=P862;gene_id=YNR043W;tss_id=TSS3039;nbOverlaps=0;ID=YNR043W;Name=MVD1
XVI	S-MART	transcript	210192	210263	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:17053:12269#0--HWUSI-EAS1656_0009_FC:3:19:4970:5871#0--HWUSI-EAS1656_0009;gene_id=tE(UUC)P;tss_id=TSS329;nbOverlaps=1946;ID=tE(UUC)P;Name=tE(UUC)P
XIV	S-MART	transcript	701238	701666	.	+	.	seqedit=false;p_id=P2100;gene_id=YNR042W;tss_id=TSS3060;nbOverlaps=0;ID=YNR042W;Name=YNR042W
XI	S-MART	transcript	166544	167452	.	+	.	seqedit=false;p_id=P3962;gene_id=YKL150W;tss_id=TSS6321;nbOverlaps=0;ID=YKL150W;Name=MCR1
III	S-MART	transcript	6479	8326	.	-	.	seqedit=false;p_id=P6591;gene_id=YCL073C;tss_id=TSS3229;nbOverlaps=0;ID=YCL073C;Name=GEX1
XIV	S-MART	transcript	703699	705876	.	+	.	seqedit=false;p_id=P6397;gene_id=YNR044W;tss_id=TSS1740;nbOverlaps=0;ID=YNR044W;Name=AGA1
XVI	S-MART	transcript	844709	849980	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:6147:6142#0--HWUSI-EAS1656_0009_FC:3:61:17569:13684#0--HWUSI-EAS1656_0009;p_id=P1714;gene_id=YPR158W-B;tss_id=TSS902;nbOverlaps=324;ID=YPR158W-B;Name=YPR158W-B
XVI	S-MART	exon	844709	846013	.	+	.	ID=YPR158W-B-exon1;Name=YPR158W-B-exon1;Parent=YPR158W-B
XVI	S-MART	exon	846015	849980	.	+	.	ID=YPR158W-B-exon2;Name=YPR158W-B-exon2;Parent=YPR158W-B
XIV	S-MART	transcript	706139	707608	.	+	.	seqedit=false;p_id=P4226;gene_id=YNR045W;tss_id=TSS5715;nbOverlaps=0;ID=YNR045W;Name=PET494
XIV	S-MART	transcript	707788	708195	.	+	.	seqedit=false;p_id=P5555;gene_id=YNR046W;tss_id=TSS6683;nbOverlaps=0;ID=YNR046W;Name=TRM112
XIV	S-MART	transcript	708523	711204	.	+	.	seqedit=false;p_id=P5062;gene_id=YNR047W;tss_id=TSS1663;nbOverlaps=0;ID=YNR047W;Name=FPK1
Mito	S-MART	transcript	35373	35444	.	+	.	seqedit=false;gene_id=tE(UUC)Q;tss_id=TSS26;nbOverlaps=0;ID=tE(UUC)Q;Name=tE(UUC)Q
XIV	S-MART	transcript	713023	713655	.	-	.	seqedit=false;p_id=P91;gene_id=YNR049C;tss_id=TSS4789;nbOverlaps=0;ID=YNR049C;Name=MSO1
III	S-MART	transcript	117380	118348	.	-	.	seqedit=false;p_id=P6142;gene_id=YCR002C;tss_id=TSS4663;nbOverlaps=0;ID=YCR002C;Name=CDC10
XIV	S-MART	transcript	711630	712811	.	+	.	seqedit=false;p_id=P5292;gene_id=YNR048W;tss_id=TSS6659;nbOverlaps=0;ID=YNR048W;Name=YNR048W
XIV	S-MART	transcript	714048	715388	.	-	.	seqedit=false;p_id=P6620;gene_id=YNR050C;tss_id=TSS5756;nbOverlaps=0;ID=YNR050C;Name=LYS9
XIV	S-MART	transcript	716780	718327	.	-	.	seqedit=false;p_id=P1656;gene_id=YNR051C;tss_id=TSS4995;nbOverlaps=0;ID=YNR051C;Name=BRE5
XIV	S-MART	transcript	719346	720647	.	-	.	seqedit=false;p_id=P1730;gene_id=YNR052C;tss_id=TSS6816;nbOverlaps=0;ID=YNR052C;Name=POP2
II	S-MART	transcript	36398	36488	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)B;tss_id=TSS5778;nbOverlaps=164;ID=tF(GAA)B;Name=tF(GAA)B
II	S-MART	exon	36398	36434	.	+	.	ID=tF(GAA)B-exon1;Name=tF(GAA)B-exon1;Parent=tF(GAA)B
II	S-MART	exon	36453	36488	.	+	.	ID=tF(GAA)B-exon2;Name=tF(GAA)B-exon2;Parent=tF(GAA)B
XIV	S-MART	transcript	721120	723112	.	-	.	seqedit=false;p_id=P579;gene_id=YNR053C;tss_id=TSS584;nbOverlaps=0;ID=YNR053C;Name=NOG2
XIV	S-MART	exon	721120	721770	.	-	.	ID=YNR053C-exon1;Name=NOG2-exon1;Parent=YNR053C
XIV	S-MART	exon	722303	723112	.	-	.	ID=YNR053C-exon2;Name=NOG2-exon2;Parent=YNR053C
XVI	S-MART	transcript	355700	357676	.	+	.	seqedit=false;p_id=P6182;gene_id=YPL104W;tss_id=TSS2090;nbOverlaps=0;ID=YPL104W;Name=MSD1
II	S-MART	transcript	290681	291865	.	-	.	seqedit=false;p_id=P486;gene_id=YBR025C;tss_id=TSS2600;nbOverlaps=0;ID=YBR025C;Name=OLA1
XVI	S-MART	transcript	861306	864014	.	+	.	seqedit=false;p_id=P4361;gene_id=YPR160W;tss_id=TSS1471;nbOverlaps=0;ID=YPR160W;Name=GPH1
XIV	S-MART	transcript	733356	734069	.	-	.	seqedit=false;p_id=P5590;gene_id=YNR057C;tss_id=TSS6364;nbOverlaps=0;ID=YNR057C;Name=BIO4
XVI	S-MART	transcript	860314	860415	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;p_id=P4789;gene_id=YPR159C-A;tss_id=TSS4765;nbOverlaps=107;ID=YPR159C-A;Name=YPR159C-A
XIV	S-MART	transcript	734291	735733	.	+	.	seqedit=false;p_id=P6502;gene_id=YNR058W;tss_id=TSS3952;nbOverlaps=0;ID=YNR058W;Name=BIO3
XII	S-MART	transcript	488997	489341	.	+	.	seqedit=false;p_id=P4452;gene_id=YLR161W;tss_id=TSS3866;nbOverlaps=0;ID=YLR161W;Name=YLR161W
XIV	S-MART	transcript	736803	738545	.	+	.	seqedit=false;p_id=P3745;gene_id=YNR059W;tss_id=TSS4340;nbOverlaps=0;ID=YNR059W;Name=MNT4
VI	S-MART	transcript	9545	10222	.	+	.	seqedit=false;p_id=P5087;gene_id=YFL061W;tss_id=TSS5972;nbOverlaps=0;ID=YFL061W;Name=DDI2
XIV	S-MART	transcript	739951	742110	.	+	.	seqedit=false;p_id=P5251;gene_id=YNR060W;tss_id=TSS1260;nbOverlaps=0;ID=YNR060W;Name=FRE4
VI	S-MART	transcript	6426	7565	.	+	.	seqedit=false;p_id=P4795;gene_id=YFL062W;tss_id=TSS4685;nbOverlaps=0;ID=YFL062W;Name=COS4
XIV	S-MART	transcript	755746	759099	.	-	.	seqedit=false;p_id=P2345;gene_id=YNR067C;tss_id=TSS598;nbOverlaps=0;ID=YNR067C;Name=DSE4
VI	S-MART	transcript	149110	149724	.	+	.	seqedit=false;p_id=P3572;gene_id=YFR001W;tss_id=TSS1303;nbOverlaps=0;ID=YFR001W;Name=LOC1
III	S-MART	transcript	1392	2135	.	+	.	seqedit=false;p_id=P5776;gene_id=YCL076W;tss_id=TSS4965;nbOverlaps=0;ID=YCL076W;Name=YCL076W
XIV	S-MART	transcript	742881	743540	.	-	.	seqedit=false;p_id=P2213;gene_id=YNR061C;tss_id=TSS4572;nbOverlaps=0;ID=YNR061C;Name=YNR061C
VI	S-MART	transcript	5066	5521	.	+	.	seqedit=false;p_id=P3156;gene_id=YFL063W;tss_id=TSS2315;nbOverlaps=0;ID=YFL063W;Name=YFL063W
VI	S-MART	transcript	14793	15431	.	-	.	seqedit=false;p_id=P4745;gene_id=YFL056C;tss_id=TSS2413;nbOverlaps=0;ID=YFL056C;Name=AAD6
XVI	S-MART	transcript	857583	859745	.	+	.	seqedit=false;p_id=P4072;gene_id=YPR159W;tss_id=TSS3145;nbOverlaps=0;ID=YPR159W;Name=KRE6
XIV	S-MART	transcript	744360	745343	.	-	.	seqedit=false;p_id=P3166;gene_id=YNR062C;tss_id=TSS505;nbOverlaps=0;ID=YNR062C;Name=YNR062C
III	S-MART	transcript	307801	308175	.	+	.	seqedit=false;p_id=P3849;gene_id=YCR104W;tss_id=TSS7009;nbOverlaps=0;ID=YCR104W;Name=PAU3
XIV	S-MART	transcript	746943	748766	.	+	.	seqedit=false;p_id=P3698;gene_id=YNR063W;tss_id=TSS3663;nbOverlaps=0;ID=YNR063W;Name=YNR063W
XII	S-MART	transcript	495429	498044	.	-	.	seqedit=false;p_id=P2506;gene_id=YLR166C;tss_id=TSS3623;nbOverlaps=0;ID=YLR166C;Name=SEC10
XII	S-MART	transcript	498947	499405	.	+	.	seqedit=false;p_id=P4938;gene_id=YLR167W;tss_id=TSS5575;nbOverlaps=0;ID=YLR167W;Name=RPS31
II	S-MART	transcript	294425	296002	.	-	.	seqedit=false;p_id=P200;gene_id=YBR028C;tss_id=TSS3279;nbOverlaps=0;ID=YBR028C;Name=YPK3
IV	S-MART	transcript	1095370	1095461	.	-	.	seqedit=false;gene_id=tF(GAA)D;tss_id=TSS1833;nbOverlaps=0;ID=tF(GAA)D;Name=tF(GAA)D
IV	S-MART	exon	1095370	1095405	.	-	.	ID=tF(GAA)D-exon1;Name=tF(GAA)D-exon1;Parent=tF(GAA)D
IV	S-MART	exon	1095425	1095461	.	-	.	ID=tF(GAA)D-exon2;Name=tF(GAA)D-exon2;Parent=tF(GAA)D
XII	S-MART	transcript	499578	500270	.	-	.	seqedit=false;p_id=P3713;gene_id=YLR168C;tss_id=TSS2347;nbOverlaps=0;ID=YLR168C;Name=UPS2
III	S-MART	transcript	115685	115999	.	+	.	seqedit=false;p_id=P1781;gene_id=YCR001W;tss_id=TSS5978;nbOverlaps=0;ID=YCR001W;Name=YCR001W
XIV	S-MART	transcript	753725	755035	.	-	.	seqedit=false;p_id=P2455;gene_id=YNR066C;tss_id=TSS3126;nbOverlaps=0;ID=YNR066C;Name=YNR066C
XII	S-MART	transcript	500579	501049	.	-	.	seqedit=false;p_id=P4181;gene_id=YLR170C;tss_id=TSS4471;nbOverlaps=0;ID=YLR170C;Name=APS1
VI	S-MART	transcript	14305	14763	.	-	.	seqedit=false;p_id=P2187;gene_id=YFL057C;tss_id=TSS2145;nbOverlaps=0;ID=YFL057C;Name=AAD16
VII	S-MART	transcript	216692	217369	.	-	.	seqedit=false;p_id=P1964;gene_id=YGL152C;tss_id=TSS7045;nbOverlaps=0;ID=YGL152C;Name=YGL152C
XIV	S-MART	transcript	761123	762592	.	-	.	seqedit=false;p_id=P395;gene_id=YNR069C;tss_id=TSS6591;nbOverlaps=0;ID=YNR069C;Name=BSC5
VII	S-MART	transcript	215278	216096	.	-	.	seqedit=false;p_id=P4400;gene_id=YGL154C;tss_id=TSS3432;nbOverlaps=0;ID=YGL154C;Name=LYS5
VII	S-MART	transcript	214081	215211	.	+	.	seqedit=false;p_id=P2876;gene_id=YGL155W;tss_id=TSS1544;nbOverlaps=0;ID=YGL155W;Name=CDC43
XII	S-MART	transcript	500335	500688	.	+	.	seqedit=false;p_id=P5800;gene_id=YLR169W;tss_id=TSS5908;nbOverlaps=0;ID=YLR169W;Name=YLR169W
VII	S-MART	transcript	210416	213667	.	+	.	seqedit=false;p_id=P3060;gene_id=YGL156W;tss_id=TSS3948;nbOverlaps=0;ID=YGL156W;Name=AMS1
VII	S-MART	transcript	209006	210049	.	+	.	seqedit=false;p_id=P643;gene_id=YGL157W;tss_id=TSS665;nbOverlaps=0;ID=YGL157W;Name=ARI1
VII	S-MART	transcript	207033	208571	.	+	.	seqedit=false;p_id=P5854;gene_id=YGL158W;tss_id=TSS3488;nbOverlaps=0;ID=YGL158W;Name=RCK1
VII	S-MART	transcript	200561	202273	.	+	.	seqedit=false;p_id=P3859;gene_id=YGL160W;tss_id=TSS6891;nbOverlaps=0;ID=YGL160W;Name=AIM14
XIV	S-MART	transcript	760067	760885	.	-	.	seqedit=false;p_id=P3186;gene_id=YNR068C;tss_id=TSS4594;nbOverlaps=0;ID=YNR068C;Name=YNR068C
VII	S-MART	transcript	202721	203833	.	+	.	seqedit=false;p_id=P6466;gene_id=YGL159W;tss_id=TSS2828;nbOverlaps=0;ID=YGL159W;Name=YGL159W
VII	S-MART	transcript	199210	200142	.	-	.	seqedit=false;p_id=P390;gene_id=YGL161C;tss_id=TSS3944;nbOverlaps=0;ID=YGL161C;Name=YIP5
XII	S-MART	transcript	501260	502162	.	-	.	seqedit=false;p_id=P2640;gene_id=YLR172C;tss_id=TSS2811;nbOverlaps=0;ID=YLR172C;Name=DPH5
VII	S-MART	transcript	198138	199037	.	+	.	seqedit=false;p_id=P1663;gene_id=YGL162W;tss_id=TSS198;nbOverlaps=0;ID=YGL162W;Name=SUT1
VII	S-MART	transcript	193707	196403	.	-	.	seqedit=false;p_id=P2632;gene_id=YGL163C;tss_id=TSS5118;nbOverlaps=0;ID=YGL163C;Name=RAD54
VII	S-MART	transcript	191978	193300	.	-	.	seqedit=false;p_id=P231;gene_id=YGL164C;tss_id=TSS4651;nbOverlaps=0;ID=YGL164C;Name=YRB30
VII	S-MART	transcript	191129	191806	.	+	.	seqedit=false;p_id=P6056;gene_id=YGL166W;tss_id=TSS2290;nbOverlaps=0;ID=YGL166W;Name=CUP2
XIV	S-MART	transcript	765375	769376	.	+	.	seqedit=false;p_id=P3861;gene_id=YNR070W;tss_id=TSS4092;nbOverlaps=0;ID=YNR070W;Name=PDR18
VII	S-MART	transcript	191398	191976	.	-	.	seqedit=false;p_id=P2879;gene_id=YGL165C;tss_id=TSS3975;nbOverlaps=0;ID=YGL165C;Name=YGL165C
VII	S-MART	transcript	187616	190468	.	-	.	seqedit=false;p_id=P5177;gene_id=YGL167C;tss_id=TSS1903;nbOverlaps=0;ID=YGL167C;Name=PMR1
VI	S-MART	transcript	153393	154313	.	+	.	seqedit=false;p_id=P5836;gene_id=YFR004W;tss_id=TSS3285;nbOverlaps=0;ID=YFR004W;Name=RPN11
VII	S-MART	transcript	187464	187796	.	+	.	seqedit=false;p_id=P3306;gene_id=YGL168W;tss_id=TSS3208;nbOverlaps=0;ID=YGL168W;Name=HUR1
VII	S-MART	transcript	186059	187339	.	+	.	seqedit=false;p_id=P4538;gene_id=YGL169W;tss_id=TSS2541;nbOverlaps=0;ID=YGL169W;Name=SUA5
VII	S-MART	transcript	184153	185394	.	-	.	seqedit=false;p_id=P4231;gene_id=YGL170C;tss_id=TSS6944;nbOverlaps=0;ID=YGL170C;Name=SPO74
VII	S-MART	transcript	182390	184084	.	+	.	seqedit=false;p_id=P5173;gene_id=YGL171W;tss_id=TSS5607;nbOverlaps=0;ID=YGL171W;Name=ROK1
XIV	S-MART	transcript	772657	774351	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:64:13317:20900#0--HWUSI-EAS1656_0009_FC:3:8:19553:20223#0;p_id=P1866;gene_id=YNR072W;tss_id=TSS3063;nbOverlaps=2;ID=YNR072W;Name=HXT17
VII	S-MART	transcript	180700	182118	.	+	.	seqedit=false;p_id=P4032;gene_id=YGL172W;tss_id=TSS5686;nbOverlaps=0;ID=YGL172W;Name=NUP49
VII	S-MART	transcript	175527	180113	.	-	.	seqedit=false;p_id=P6354;gene_id=YGL173C;tss_id=TSS6303;nbOverlaps=0;ID=YGL173C;Name=XRN1
XII	S-MART	transcript	504591	505829	.	+	.	seqedit=false;p_id=P1970;gene_id=YLR174W;tss_id=TSS992;nbOverlaps=0;ID=YLR174W;Name=IDP2
VII	S-MART	transcript	174545	175345	.	+	.	seqedit=false;p_id=P5323;gene_id=YGL174W;tss_id=TSS4853;nbOverlaps=0;ID=YGL174W;Name=BUD13
VII	S-MART	transcript	173285	174322	.	-	.	seqedit=false;p_id=P3750;gene_id=YGL175C;tss_id=TSS3217;nbOverlaps=0;ID=YGL175C;Name=SAE2
VII	S-MART	transcript	167352	170571	.	+	.	seqedit=false;p_id=P1809;gene_id=YGL178W;tss_id=TSS5776;nbOverlaps=0;ID=YGL178W;Name=MPT5
VII	S-MART	exon	167352	167354	.	+	.	ID=YGL178W-exon1;Name=MPT5-exon1;Parent=YGL178W
VII	S-MART	exon	167995	170571	.	+	.	ID=YGL178W-exon2;Name=MPT5-exon2;Parent=YGL178W
VII	S-MART	transcript	171415	173079	.	-	.	seqedit=false;p_id=P2488;gene_id=YGL176C;tss_id=TSS4293;nbOverlaps=0;ID=YGL176C;Name=YGL176C
XIV	S-MART	transcript	770440	771468	.	-	.	seqedit=false;p_id=P6428;gene_id=YNR071C;tss_id=TSS2432;nbOverlaps=0;ID=YNR071C;Name=YNR071C
VII	S-MART	transcript	167559	167906	.	+	.	seqedit=false;p_id=P1152;gene_id=YGL177W;tss_id=TSS2019;nbOverlaps=0;ID=YGL177W;Name=YGL177W
XII	S-MART	transcript	502421	504247	.	+	.	seqedit=false;p_id=P203;gene_id=YLR173W;tss_id=TSS4275;nbOverlaps=0;ID=YLR173W;Name=YLR173W
VII	S-MART	transcript	163409	165091	.	-	.	seqedit=false;p_id=P5433;gene_id=YGL179C;tss_id=TSS2040;nbOverlaps=0;ID=YGL179C;Name=TOS3
VII	S-MART	transcript	160065	162758	.	+	.	seqedit=false;p_id=P3177;gene_id=YGL180W;tss_id=TSS1479;nbOverlaps=0;ID=YGL180W;Name=ATG1
VII	S-MART	transcript	157906	159096	.	+	.	seqedit=false;p_id=P1471;gene_id=YGL181W;tss_id=TSS4069;nbOverlaps=0;ID=YGL181W;Name=GTS1
XIV	S-MART	transcript	777602	778738	.	-	.	seqedit=false;p_id=P2525;gene_id=YNR074C;tss_id=TSS125;nbOverlaps=0;ID=YNR074C;Name=AIF1
VII	S-MART	transcript	156543	157285	.	-	.	seqedit=false;p_id=P3740;gene_id=YGL183C;tss_id=TSS3360;nbOverlaps=0;ID=YGL183C;Name=MND1
VII	S-MART	exon	156543	157199	.	-	.	ID=YGL183C-exon1;Name=MND1-exon1;Parent=YGL183C
VII	S-MART	exon	157283	157285	.	-	.	ID=YGL183C-exon2;Name=MND1-exon2;Parent=YGL183C
VII	S-MART	transcript	157273	157596	.	-	.	seqedit=false;p_id=P4699;gene_id=YGL182C;tss_id=TSS2618;nbOverlaps=0;ID=YGL182C;Name=YGL182C
XII	S-MART	transcript	506134	507585	.	+	.	seqedit=false;p_id=P1495;gene_id=YLR175W;tss_id=TSS204;nbOverlaps=0;ID=YLR175W;Name=CBF5
VII	S-MART	transcript	154615	156012	.	-	.	seqedit=false;p_id=P6200;gene_id=YGL184C;tss_id=TSS1173;nbOverlaps=0;ID=YGL184C;Name=STR3
VII	S-MART	transcript	151037	152776	.	-	.	seqedit=false;p_id=P2805;gene_id=YGL186C;tss_id=TSS5733;nbOverlaps=0;ID=YGL186C;Name=TPN1
XIV	S-MART	transcript	774792	776300	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:10761:20527#0;p_id=P2114;gene_id=YNR073C;tss_id=TSS5297;nbOverlaps=1;ID=YNR073C;Name=YNR073C
VII	S-MART	transcript	153167	154306	.	-	.	seqedit=false;p_id=P4707;gene_id=YGL185C;tss_id=TSS5886;nbOverlaps=0;ID=YGL185C;Name=YGL185C
VII	S-MART	transcript	149704	150171	.	-	.	seqedit=false;p_id=P5106;gene_id=YGL187C;tss_id=TSS893;nbOverlaps=0;ID=YGL187C;Name=COX4
XII	S-MART	transcript	507797	510232	.	-	.	seqedit=false;p_id=P1036;gene_id=YLR176C;tss_id=TSS4915;nbOverlaps=0;ID=YLR176C;Name=RFX1
VII	S-MART	transcript	148824	148964	.	-	.	seqedit=false;p_id=P932;gene_id=YGL188C-A;tss_id=TSS6596;nbOverlaps=0;ID=YGL188C-A;Name=YGL188C-A
VII	S-MART	transcript	149343	149516	.	-	.	seqedit=false;p_id=P1439;gene_id=YGL188C;tss_id=TSS5730;nbOverlaps=0;ID=YGL188C;Name=YGL188C
VII	S-MART	transcript	148229	148588	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:15275:2023#0--HWUSI-EAS1656_0009_FC:3:108:4937:1598#0--HWUSI-EAS1656_000;p_id=P1937;gene_id=YGL189C;tss_id=TSS3665;nbOverlaps=8;ID=YGL189C;Name=RPS26A
VII	S-MART	transcript	145809	147389	.	-	.	seqedit=false;p_id=P2331;gene_id=YGL190C;tss_id=TSS4449;nbOverlaps=0;ID=YGL190C;Name=CDC55
XIV	S-MART	transcript	781511	781603	.	-	.	seqedit=false;p_id=P3784;gene_id=YNR075C-A;tss_id=TSS350;nbOverlaps=0;ID=YNR075C-A;Name=YNR075C-A
VII	S-MART	transcript	144808	145197	.	+	.	seqedit=false;p_id=P1409;gene_id=YGL191W;tss_id=TSS93;nbOverlaps=0;ID=YGL191W;Name=COX13
VII	S-MART	transcript	142246	144048	.	+	.	seqedit=false;p_id=P2149;gene_id=YGL192W;tss_id=TSS3351;nbOverlaps=0;ID=YGL192W;Name=IME4
XII	S-MART	transcript	513162	513821	.	-	.	seqedit=false;p_id=P2320;gene_id=YLR178C;tss_id=TSS5326;nbOverlaps=0;ID=YLR178C;Name=TFS1
VII	S-MART	transcript	140368	141726	.	-	.	seqedit=false;p_id=P3869;gene_id=YGL194C;tss_id=TSS6183;nbOverlaps=0;ID=YGL194C;Name=HOS2
VII	S-MART	transcript	141916	142227	.	-	.	seqedit=false;p_id=P4165;gene_id=YGL193C;tss_id=TSS4011;nbOverlaps=0;ID=YGL193C;Name=YGL193C
VII	S-MART	transcript	139719	139961	.	-	.	seqedit=false;p_id=P2849;gene_id=YGL194C-A;tss_id=TSS5001;nbOverlaps=0;ID=YGL194C-A;Name=YGL194C-A
VII	S-MART	transcript	131525	139543	.	+	.	seqedit=false;p_id=P782;gene_id=YGL195W;tss_id=TSS6310;nbOverlaps=0;ID=YGL195W;Name=GCN1
XIV	S-MART	transcript	779916	781040	.	+	.	seqedit=false;p_id=P211;gene_id=YNR075W;tss_id=TSS2897;nbOverlaps=0;ID=YNR075W;Name=COS10
VII	S-MART	transcript	129883	131169	.	+	.	seqedit=false;p_id=P448;gene_id=YGL196W;tss_id=TSS3586;nbOverlaps=0;ID=YGL196W;Name=DSD1
VII	S-MART	transcript	124698	129161	.	+	.	seqedit=false;p_id=P1621;gene_id=YGL197W;tss_id=TSS5308;nbOverlaps=0;ID=YGL197W;Name=MDS3
XII	S-MART	transcript	511054	512940	.	+	.	seqedit=false;p_id=P2913;gene_id=YLR177W;tss_id=TSS5422;nbOverlaps=0;ID=YLR177W;Name=YLR177W
VII	S-MART	transcript	123591	124298	.	+	.	seqedit=false;p_id=P6380;gene_id=YGL198W;tss_id=TSS3717;nbOverlaps=0;ID=YGL198W;Name=YIP4
VII	S-MART	transcript	122694	123305	.	-	.	seqedit=false;p_id=P6157;gene_id=YGL200C;tss_id=TSS3500;nbOverlaps=0;ID=YGL200C;Name=EMP24
VII	S-MART	transcript	123572	124042	.	-	.	seqedit=false;p_id=P4381;gene_id=YGL199C;tss_id=TSS3689;nbOverlaps=0;ID=YGL199C;Name=YGL199C
VII	S-MART	transcript	117854	120907	.	-	.	seqedit=false;p_id=P302;gene_id=YGL201C;tss_id=TSS2934;nbOverlaps=0;ID=YGL201C;Name=MCM6
XIV	S-MART	transcript	781918	782280	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0;p_id=P2043;gene_id=YNR076W;tss_id=TSS4662;nbOverlaps=1;ID=YNR076W;Name=PAU6
VII	S-MART	transcript	116059	117561	.	+	.	seqedit=false;p_id=P2642;gene_id=YGL202W;tss_id=TSS5201;nbOverlaps=0;ID=YGL202W;Name=ARO8
VII	S-MART	transcript	112475	114664	.	-	.	seqedit=false;p_id=P5030;gene_id=YGL203C;tss_id=TSS6086;nbOverlaps=0;ID=YGL203C;Name=KEX1
XII	S-MART	transcript	515262	516410	.	+	.	seqedit=false;p_id=P6252;gene_id=YLR180W;tss_id=TSS5941;nbOverlaps=0;ID=YLR180W;Name=SAM1
VII	S-MART	transcript	108158	110404	.	+	.	seqedit=false;p_id=P5963;gene_id=YGL205W;tss_id=TSS4658;nbOverlaps=0;ID=YGL205W;Name=POX1
VI	S-MART	transcript	11363	12259	.	+	.	seqedit=false;p_id=P1587;gene_id=YFL059W;tss_id=TSS5198;nbOverlaps=0;ID=YFL059W;Name=SNZ3
VII	S-MART	transcript	111700	112005	.	-	.	seqedit=false;p_id=P2195;gene_id=YGL204C;tss_id=TSS2178;nbOverlaps=0;ID=YGL204C;Name=YGL204C
VII	S-MART	transcript	102543	107504	.	-	.	seqedit=false;p_id=P3359;gene_id=YGL206C;tss_id=TSS5051;nbOverlaps=0;ID=YGL206C;Name=CHC1
VII	S-MART	transcript	98969	102076	.	+	.	seqedit=false;p_id=P1518;gene_id=YGL207W;tss_id=TSS867;nbOverlaps=0;ID=YGL207W;Name=SPT16
XV	S-MART	transcript	325249	326130	.	+	.	seqedit=false;p_id=P3642;gene_id=YOL001W;tss_id=TSS5257;nbOverlaps=0;ID=YOL001W;Name=PHO80
VII	S-MART	transcript	97338	98585	.	+	.	seqedit=false;p_id=P6120;gene_id=YGL208W;tss_id=TSS5758;nbOverlaps=0;ID=YGL208W;Name=SIP2
VII	S-MART	transcript	95858	97006	.	+	.	seqedit=false;p_id=P6611;gene_id=YGL209W;tss_id=TSS5093;nbOverlaps=0;ID=YGL209W;Name=MIG2
VI	S-MART	transcript	166728	166916	.	+	.	seqedit=false;p_id=P5580;gene_id=YFR010W-A;tss_id=TSS5535;nbOverlaps=0;ID=YFR010W-A;Name=YFR010W-A
XIV	S-MART	transcript	783287	783541	.	-	.	seqedit=false;p_id=P4103;gene_id=YNR077C;tss_id=TSS2274;nbOverlaps=0;ID=YNR077C;Name=YNR077C
XII	S-MART	transcript	516678	517670	.	-	.	seqedit=false;p_id=P2641;gene_id=YLR181C;tss_id=TSS1486;nbOverlaps=0;ID=YLR181C;Name=VTA1
XV	S-MART	transcript	323411	324364	.	-	.	seqedit=false;p_id=P2397;gene_id=YOL002C;tss_id=TSS4914;nbOverlaps=0;ID=YOL002C;Name=IZH2
XII	S-MART	transcript	517940	520351	.	+	.	seqedit=false;p_id=P5267;gene_id=YLR182W;tss_id=TSS4267;nbOverlaps=0;ID=YLR182W;Name=SWI6
XV	S-MART	transcript	321858	322994	.	-	.	seqedit=false;p_id=P177;gene_id=YOL003C;tss_id=TSS6209;nbOverlaps=0;ID=YOL003C;Name=PFA4
XII	S-MART	transcript	520543	522012	.	-	.	seqedit=false;p_id=P51;gene_id=YLR183C;tss_id=TSS6851;nbOverlaps=0;ID=YLR183C;Name=TOS4
XV	S-MART	transcript	316938	321548	.	+	.	seqedit=false;p_id=P1791;gene_id=YOL004W;tss_id=TSS6150;nbOverlaps=0;ID=YOL004W;Name=SIN3
XII	S-MART	transcript	522663	523288	.	+	.	seqedit=false;p_id=P3768;gene_id=YLR185W;tss_id=TSS2456;nbOverlaps=0;ID=YLR185W;Name=RPL37A
XII	S-MART	exon	522663	522669	.	+	.	ID=YLR185W-exon1;Name=RPL37A-exon1;Parent=YLR185W
XII	S-MART	exon	523029	523288	.	+	.	ID=YLR185W-exon2;Name=RPL37A-exon2;Parent=YLR185W
XVI	S-MART	transcript	864449	866422	.	-	.	seqedit=false;p_id=P791;gene_id=YPR161C;tss_id=TSS5481;nbOverlaps=0;ID=YPR161C;Name=SGV1
XV	S-MART	transcript	315813	316175	.	-	.	seqedit=false;p_id=P2444;gene_id=YOL005C;tss_id=TSS4859;nbOverlaps=0;ID=YOL005C;Name=RPB11
XII	S-MART	transcript	522106	522453	.	+	.	seqedit=false;p_id=P1926;gene_id=YLR184W;tss_id=TSS975;nbOverlaps=0;ID=YLR184W;Name=YLR184W
XV	S-MART	transcript	313078	315387	.	-	.	seqedit=false;p_id=P2258;gene_id=YOL006C;tss_id=TSS1681;nbOverlaps=0;ID=YOL006C;Name=TOP1
XVI	S-MART	transcript	282122	282970	.	+	.	seqedit=false;p_id=P364;gene_id=YPL143W;tss_id=TSS5550;nbOverlaps=0;ID=YPL143W;Name=RPL33A
XVI	S-MART	exon	282122	282140	.	+	.	ID=YPL143W-exon1;Name=RPL33A-exon1;Parent=YPL143W
XVI	S-MART	exon	282666	282970	.	+	.	ID=YPL143W-exon2;Name=RPL33A-exon2;Parent=YPL143W
XV	S-MART	transcript	311342	312367	.	-	.	seqedit=false;p_id=P4889;gene_id=YOL007C;tss_id=TSS2230;nbOverlaps=0;ID=YOL007C;Name=CSI2
XVI	S-MART	transcript	282686	283003	.	-	.	seqedit=false;p_id=P881;gene_id=YPL142C;tss_id=TSS6669;nbOverlaps=0;ID=YPL142C;Name=YPL142C
XV	S-MART	transcript	310312	310935	.	+	.	seqedit=false;p_id=P2065;gene_id=YOL008W;tss_id=TSS3920;nbOverlaps=0;ID=YOL008W;Name=COQ10
XII	S-MART	transcript	523632	524390	.	+	.	seqedit=false;p_id=P221;gene_id=YLR186W;tss_id=TSS527;nbOverlaps=0;ID=YLR186W;Name=EMG1
XV	S-MART	transcript	309324	310139	.	-	.	seqedit=false;p_id=P2291;gene_id=YOL009C;tss_id=TSS5235;nbOverlaps=0;ID=YOL009C;Name=MDM12
VI	S-MART	transcript	184502	191338	.	+	.	seqedit=false;p_id=P2323;gene_id=YFR019W;tss_id=TSS1338;nbOverlaps=0;ID=YFR019W;Name=FAB1
XVI	S-MART	transcript	866715	868304	.	-	.	seqedit=false;p_id=P5306;gene_id=YPR162C;tss_id=TSS6684;nbOverlaps=0;ID=YPR162C;Name=ORC4
XV	S-MART	transcript	307938	309041	.	+	.	seqedit=false;p_id=P3167;gene_id=YOL010W;tss_id=TSS623;nbOverlaps=0;ID=YOL010W;Name=RCL1
XII	S-MART	transcript	528300	530387	.	+	.	seqedit=false;p_id=P3573;gene_id=YLR188W;tss_id=TSS4184;nbOverlaps=0;ID=YLR188W;Name=MDL1
XV	S-MART	transcript	305349	307409	.	+	.	seqedit=false;p_id=P3187;gene_id=YOL011W;tss_id=TSS3522;nbOverlaps=0;ID=YOL011W;Name=PLB3
X	S-MART	transcript	178097	180103	.	-	.	seqedit=false;p_id=P3325;gene_id=YJL128C;tss_id=TSS4634;nbOverlaps=0;ID=YJL128C;Name=PBS2
XII	S-MART	transcript	530797	534393	.	-	.	seqedit=false;p_id=P5833;gene_id=YLR189C;tss_id=TSS6783;nbOverlaps=0;ID=YLR189C;Name=ATG26
X	S-MART	transcript	173599	177306	.	-	.	seqedit=false;p_id=P1139;gene_id=YJL129C;tss_id=TSS3499;nbOverlaps=0;ID=YJL129C;Name=TRK1
X	S-MART	transcript	165723	172367	.	-	.	seqedit=false;p_id=P4434;gene_id=YJL130C;tss_id=TSS1704;nbOverlaps=0;ID=YJL130C;Name=URA2
X	S-MART	transcript	164278	165348	.	-	.	seqedit=false;p_id=P5415;gene_id=YJL131C;tss_id=TSS6526;nbOverlaps=0;ID=YJL131C;Name=AIM23
X	S-MART	transcript	159623	159847	.	-	.	seqedit=false;p_id=P5667;gene_id=YJL133C-A;tss_id=TSS3585;nbOverlaps=0;ID=YJL133C-A;Name=YJL133C-A
XV	S-MART	transcript	303579	303983	.	-	.	seqedit=false;p_id=P5486;gene_id=YOL012C;tss_id=TSS4922;nbOverlaps=0;ID=YOL012C;Name=HTZ1
X	S-MART	transcript	161914	164166	.	+	.	seqedit=false;p_id=P1992;gene_id=YJL132W;tss_id=TSS3123;nbOverlaps=0;ID=YJL132W;Name=YJL132W
X	S-MART	transcript	160619	161563	.	+	.	seqedit=false;p_id=P2354;gene_id=YJL133W;tss_id=TSS2790;nbOverlaps=0;ID=YJL133W;Name=MRS3
XII	S-MART	transcript	535214	536689	.	+	.	seqedit=false;p_id=P2505;gene_id=YLR190W;tss_id=TSS4581;nbOverlaps=0;ID=YLR190W;Name=MMR1
X	S-MART	transcript	158188	159417	.	+	.	seqedit=false;p_id=P1945;gene_id=YJL134W;tss_id=TSS1974;nbOverlaps=0;ID=YJL134W;Name=LCB3
X	S-MART	transcript	156550	157273	.	-	.	seqedit=false;p_id=P2914;gene_id=YJL136C;tss_id=TSS5662;nbOverlaps=0;ID=YJL136C;Name=RPS21B
X	S-MART	exon	156550	156789	.	-	.	ID=YJL136C-exon1;Name=RPS21B-exon1;Parent=YJL136C
X	S-MART	exon	157250	157273	.	-	.	ID=YJL136C-exon2;Name=RPS21B-exon2;Parent=YJL136C
X	S-MART	transcript	157877	158194	.	+	.	seqedit=false;p_id=P3626;gene_id=YJL135W;tss_id=TSS3270;nbOverlaps=0;ID=YJL135W;Name=YJL135W
XV	S-MART	transcript	301380	303035	.	-	.	seqedit=false;p_id=P5261;gene_id=YOL013C;tss_id=TSS3670;nbOverlaps=0;ID=YOL013C;Name=HRD1
X	S-MART	transcript	156169	156252	.	+	.	seqedit=false;p_id=P5467;gene_id=YJL136W-A;tss_id=TSS4258;nbOverlaps=0;ID=YJL136W-A;Name=YJL136W-A
XII	S-MART	transcript	537272	538432	.	+	.	seqedit=false;p_id=P4487;gene_id=YLR191W;tss_id=TSS1940;nbOverlaps=0;ID=YLR191W;Name=PEX13
X	S-MART	transcript	154985	156127	.	-	.	seqedit=false;p_id=P426;gene_id=YJL137C;tss_id=TSS5390;nbOverlaps=0;ID=YJL137C;Name=GLG2
X	S-MART	transcript	153504	154691	.	-	.	seqedit=false;p_id=P2512;gene_id=YJL138C;tss_id=TSS2096;nbOverlaps=0;ID=YJL138C;Name=TIF2
X	S-MART	transcript	151713	152999	.	-	.	seqedit=false;p_id=P5735;gene_id=YJL139C;tss_id=TSS6410;nbOverlaps=0;ID=YJL139C;Name=YUR1
X	S-MART	transcript	150961	151626	.	+	.	seqedit=false;p_id=P3446;gene_id=YJL140W;tss_id=TSS6240;nbOverlaps=0;ID=YJL140W;Name=RPB4
XV	S-MART	transcript	301047	301238	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:65:8521:14869#0--HWUSI-EAS1656_0009_FC:3:99:8728:14773#0--HWUSI-EAS1656_0009;p_id=P1827;gene_id=YOL013W-A;tss_id=TSS3900;nbOverlaps=963;ID=YOL013W-A;Name=YOL013W-A
X	S-MART	transcript	147967	150390	.	-	.	seqedit=false;p_id=P2453;gene_id=YJL141C;tss_id=TSS5109;nbOverlaps=0;ID=YJL141C;Name=YAK1
X	S-MART	transcript	147819	148211	.	-	.	seqedit=false;p_id=P1955;gene_id=YJL142C;tss_id=TSS3830;nbOverlaps=0;ID=YJL142C;Name=IRC9
VI	S-MART	transcript	199874	201709	.	+	.	seqedit=false;p_id=P858;gene_id=YFR023W;tss_id=TSS242;nbOverlaps=0;ID=YFR023W;Name=PES4
X	S-MART	transcript	147101	147577	.	+	.	seqedit=false;p_id=P5067;gene_id=YJL143W;tss_id=TSS5508;nbOverlaps=0;ID=YJL143W;Name=TIM17
X	S-MART	transcript	145160	146044	.	+	.	seqedit=false;p_id=P6432;gene_id=YJL145W;tss_id=TSS4666;nbOverlaps=0;ID=YJL145W;Name=SFH5
X	S-MART	transcript	146359	146673	.	+	.	seqedit=false;p_id=P6337;gene_id=YJL144W;tss_id=TSS112;nbOverlaps=0;ID=YJL144W;Name=YJL144W
X	S-MART	transcript	143292	144701	.	+	.	seqedit=false;p_id=P2068;gene_id=YJL146W;tss_id=TSS6354;nbOverlaps=0;ID=YJL146W;Name=IDS2
XVI	S-MART	transcript	868645	869955	.	-	.	seqedit=false;p_id=P327;gene_id=YPR163C;tss_id=TSS5984;nbOverlaps=0;ID=YPR163C;Name=TIF3
XV	S-MART	transcript	300690	300980	.	+	.	seqedit=false;p_id=P606;gene_id=YOL013W-B;tss_id=TSS1585;nbOverlaps=0;ID=YOL013W-B;Name=YOL013W-B
X	S-MART	transcript	140437	141138	.	+	.	seqedit=false;p_id=P4867;gene_id=YJL148W;tss_id=TSS2837;nbOverlaps=0;ID=YJL148W;Name=RPA34
X	S-MART	transcript	141419	142567	.	-	.	seqedit=false;p_id=P4018;gene_id=YJL147C;tss_id=TSS5562;nbOverlaps=0;ID=YJL147C;Name=YJL147C
VI	S-MART	transcript	201960	203433	.	-	.	seqedit=false;p_id=P5246;gene_id=YFR024C-A;tss_id=TSS3330;nbOverlaps=0;ID=YFR024C-A;Name=LSB3
VI	S-MART	exon	201960	203292	.	-	.	ID=YFR024C-A-exon1;Name=LSB3-exon1;Parent=YFR024C-A
VI	S-MART	exon	203387	203433	.	-	.	ID=YFR024C-A-exon2;Name=LSB3-exon2;Parent=YFR024C-A
X	S-MART	transcript	137379	139370	.	+	.	seqedit=false;p_id=P3841;gene_id=YJL149W;tss_id=TSS6046;nbOverlaps=0;ID=YJL149W;Name=DAS1
X	S-MART	transcript	136372	136773	.	-	.	seqedit=false;p_id=P3124;gene_id=YJL151C;tss_id=TSS4953;nbOverlaps=0;ID=YJL151C;Name=SNA3
X	S-MART	transcript	137123	137425	.	+	.	seqedit=false;p_id=P3022;gene_id=YJL150W;tss_id=TSS6444;nbOverlaps=0;ID=YJL150W;Name=YJL150W
X	S-MART	transcript	134332	135933	.	-	.	seqedit=false;p_id=P5135;gene_id=YJL153C;tss_id=TSS4534;nbOverlaps=0;ID=YJL153C;Name=INO1
XV	S-MART	transcript	297078	298838	.	+	.	seqedit=false;p_id=P4598;gene_id=YOL015W;tss_id=TSS6375;nbOverlaps=0;ID=YOL015W;Name=IRC10
X	S-MART	transcript	136174	136533	.	+	.	seqedit=false;p_id=P2542;gene_id=YJL152W;tss_id=TSS999;nbOverlaps=0;ID=YJL152W;Name=YJL152W
X	S-MART	transcript	131101	133935	.	-	.	seqedit=false;p_id=P630;gene_id=YJL154C;tss_id=TSS2388;nbOverlaps=0;ID=YJL154C;Name=VPS35
XVI	S-MART	transcript	266180	267535	.	-	.	seqedit=false;p_id=P5097;gene_id=YPL151C;tss_id=TSS2157;nbOverlaps=0;ID=YPL151C;Name=PRP46
X	S-MART	transcript	129285	130643	.	-	.	seqedit=false;p_id=P3106;gene_id=YJL155C;tss_id=TSS1100;nbOverlaps=0;ID=YJL155C;Name=FBP26
X	S-MART	transcript	126853	128952	.	-	.	seqedit=false;p_id=P2019;gene_id=YJL156C;tss_id=TSS263;nbOverlaps=0;ID=YJL156C;Name=SSY5
X	S-MART	transcript	126604	126825	.	+	.	seqedit=false;p_id=P4897;gene_id=YJL156W-A;tss_id=TSS1502;nbOverlaps=0;ID=YJL156W-A;Name=YJL156W-A
X	S-MART	transcript	123836	126328	.	-	.	seqedit=false;p_id=P6368;gene_id=YJL157C;tss_id=TSS416;nbOverlaps=0;ID=YJL157C;Name=FAR1
XV	S-MART	transcript	299693	300067	.	+	.	seqedit=false;p_id=P1786;gene_id=YOL014W;tss_id=TSS6672;nbOverlaps=0;ID=YOL014W;Name=YOL014W
X	S-MART	transcript	122265	122948	.	-	.	seqedit=false;p_id=P5852;gene_id=YJL158C;tss_id=TSS338;nbOverlaps=0;ID=YJL158C;Name=CIS3
X	S-MART	transcript	120449	121690	.	+	.	seqedit=false;p_id=P5402;gene_id=YJL159W;tss_id=TSS4854;nbOverlaps=0;ID=YJL159W;Name=HSP150
XVI	S-MART	transcript	268188	270893	.	+	.	seqedit=false;p_id=P4822;gene_id=YPL150W;tss_id=TSS5992;nbOverlaps=0;ID=YPL150W;Name=YPL150W
X	S-MART	transcript	117245	117787	.	+	.	seqedit=false;p_id=P5589;gene_id=YJL161W;tss_id=TSS1668;nbOverlaps=0;ID=YJL161W;Name=FMP33
X	S-MART	transcript	117962	118825	.	-	.	seqedit=false;p_id=P4923;gene_id=YJL160C;tss_id=TSS4886;nbOverlaps=0;ID=YJL160C;Name=YJL160C
X	S-MART	transcript	113878	115629	.	-	.	seqedit=false;p_id=P5028;gene_id=YJL162C;tss_id=TSS921;nbOverlaps=0;ID=YJL162C;Name=JJJ2
X	S-MART	transcript	109966	111159	.	-	.	seqedit=false;p_id=P6313;gene_id=YJL164C;tss_id=TSS1863;nbOverlaps=0;ID=YJL164C;Name=TPK1
XV	S-MART	transcript	294777	296120	.	-	.	seqedit=false;p_id=P5019;gene_id=YOL016C;tss_id=TSS4712;nbOverlaps=0;ID=YOL016C;Name=CMK2
X	S-MART	transcript	111666	113333	.	-	.	seqedit=false;p_id=P4464;gene_id=YJL163C;tss_id=TSS1366;nbOverlaps=0;ID=YJL163C;Name=YJL163C
X	S-MART	transcript	106894	109461	.	-	.	seqedit=false;p_id=P2588;gene_id=YJL165C;tss_id=TSS4300;nbOverlaps=0;ID=YJL165C;Name=HAL5
VI	S-MART	transcript	203743	204750	.	-	.	seqedit=false;p_id=P453;gene_id=YFR025C;tss_id=TSS3677;nbOverlaps=0;ID=YFR025C;Name=HIS2
X	S-MART	transcript	106434	106718	.	+	.	seqedit=false;p_id=P6571;gene_id=YJL166W;tss_id=TSS77;nbOverlaps=0;ID=YJL166W;Name=QCR8
X	S-MART	transcript	105014	106072	.	+	.	seqedit=false;p_id=P359;gene_id=YJL167W;tss_id=TSS103;nbOverlaps=0;ID=YJL167W;Name=ERG20
X	S-MART	transcript	102227	104428	.	-	.	seqedit=false;p_id=P74;gene_id=YJL168C;tss_id=TSS4116;nbOverlaps=0;ID=YJL168C;Name=SET2
X	S-MART	transcript	101150	101779	.	-	.	seqedit=false;p_id=P328;gene_id=YJL170C;tss_id=TSS3183;nbOverlaps=0;ID=YJL170C;Name=ASG7
XV	S-MART	transcript	292529	294673	.	+	.	seqedit=false;p_id=P6568;gene_id=YOL017W;tss_id=TSS2271;nbOverlaps=0;ID=YOL017W;Name=ESC8
X	S-MART	transcript	102099	102467	.	+	.	seqedit=false;p_id=P601;gene_id=YJL169W;tss_id=TSS5134;nbOverlaps=0;ID=YJL169W;Name=YJL169W
X	S-MART	transcript	97737	99467	.	+	.	seqedit=false;p_id=P2706;gene_id=YJL172W;tss_id=TSS5846;nbOverlaps=0;ID=YJL172W;Name=CPS1
VI	S-MART	transcript	205748	206257	.	-	.	seqedit=false;p_id=P42;gene_id=YFR026C;tss_id=TSS6770;nbOverlaps=0;ID=YFR026C;Name=ULI1
X	S-MART	transcript	99704	100894	.	-	.	seqedit=false;p_id=P321;gene_id=YJL171C;tss_id=TSS2081;nbOverlaps=0;ID=YJL171C;Name=YJL171C
X	S-MART	transcript	96161	96529	.	-	.	seqedit=false;p_id=P647;gene_id=YJL173C;tss_id=TSS2378;nbOverlaps=0;ID=YJL173C;Name=RFA3
X	S-MART	transcript	95092	95922	.	+	.	seqedit=false;p_id=P2401;gene_id=YJL174W;tss_id=TSS4140;nbOverlaps=0;ID=YJL174W;Name=KRE9
X	S-MART	transcript	92053	94530	.	-	.	seqedit=false;p_id=P6310;gene_id=YJL176C;tss_id=TSS5853;nbOverlaps=0;ID=YJL176C;Name=SWI3
XVI	S-MART	transcript	870703	874926	.	+	.	seqedit=false;p_id=P5902;gene_id=YPR164W;tss_id=TSS1357;nbOverlaps=0;ID=YPR164W;Name=MMS1
XV	S-MART	transcript	290881	292074	.	-	.	seqedit=false;p_id=P3822;gene_id=YOL018C;tss_id=TSS3996;nbOverlaps=0;ID=YOL018C;Name=TLG2
X	S-MART	transcript	94049	94561	.	+	.	seqedit=false;p_id=P5535;gene_id=YJL175W;tss_id=TSS1012;nbOverlaps=0;ID=YJL175W;Name=YJL175W
X	S-MART	transcript	90786	91657	.	+	.	seqedit=false;p_id=P4480;gene_id=YJL177W;tss_id=TSS1006;nbOverlaps=0;ID=YJL177W;Name=RPL17B
X	S-MART	exon	90786	91094	.	+	.	ID=YJL177W-exon1;Name=RPL17B-exon1;Parent=YJL177W
X	S-MART	exon	91412	91657	.	+	.	ID=YJL177W-exon2;Name=RPL17B-exon2;Parent=YJL177W
XII	S-MART	transcript	547853	548769	.	-	.	seqedit=false;p_id=P455;gene_id=YLR199C;tss_id=TSS5233;nbOverlaps=0;ID=YLR199C;Name=PBA1
XII	S-MART	exon	547853	548677	.	-	.	ID=YLR199C-exon1;Name=PBA1-exon1;Parent=YLR199C
XII	S-MART	exon	548764	548769	.	-	.	ID=YLR199C-exon2;Name=PBA1-exon2;Parent=YLR199C
X	S-MART	transcript	89282	90097	.	-	.	seqedit=false;p_id=P2968;gene_id=YJL178C;tss_id=TSS3068;nbOverlaps=0;ID=YJL178C;Name=ATG27
X	S-MART	transcript	88787	89116	.	+	.	seqedit=false;p_id=P5328;gene_id=YJL179W;tss_id=TSS3413;nbOverlaps=0;ID=YJL179W;Name=PFD1
XV	S-MART	transcript	187024	189414	.	+	.	seqedit=false;p_id=P4277;gene_id=YOL076W;tss_id=TSS2143;nbOverlaps=0;ID=YOL076W;Name=MDM20
X	S-MART	transcript	87583	88560	.	-	.	seqedit=false;p_id=P6438;gene_id=YJL180C;tss_id=TSS6695;nbOverlaps=0;ID=YJL180C;Name=ATP12
XI	S-MART	transcript	210593	212332	.	+	.	seqedit=false;p_id=P2383;gene_id=YKL124W;tss_id=TSS2141;nbOverlaps=0;ID=YKL124W;Name=SSH4
XII	S-MART	transcript	547286	547645	.	-	.	seqedit=false;p_id=P2056;gene_id=YLR198C;tss_id=TSS121;nbOverlaps=0;ID=YLR198C;Name=YLR198C
X	S-MART	transcript	85660	87495	.	+	.	seqedit=false;p_id=P4685;gene_id=YJL181W;tss_id=TSS4639;nbOverlaps=0;ID=YJL181W;Name=YJL181W
X	S-MART	transcript	85435	85752	.	-	.	seqedit=false;p_id=P2081;gene_id=YJL182C;tss_id=TSS4212;nbOverlaps=0;ID=YJL182C;Name=YJL182C
XII	S-MART	transcript	765655	766089	.	+	.	seqedit=false;p_id=P1079;gene_id=YLR317W;tss_id=TSS2337;nbOverlaps=0;ID=YLR317W;Name=YLR317W
XII	S-MART	transcript	769318	771684	.	-	.	seqedit=false;p_id=P5120;gene_id=YLR319C;tss_id=TSS3713;nbOverlaps=0;ID=YLR319C;Name=BUD6
XII	S-MART	transcript	771940	776304	.	+	.	seqedit=false;p_id=P4700;gene_id=YLR320W;tss_id=TSS6391;nbOverlaps=0;ID=YLR320W;Name=MMS22
XVI	S-MART	transcript	257216	259336	.	-	.	seqedit=false;p_id=P1549;gene_id=YPL155C;tss_id=TSS765;nbOverlaps=0;ID=YPL155C;Name=KIP2
XII	S-MART	transcript	776584	777864	.	-	.	seqedit=false;p_id=P1957;gene_id=YLR321C;tss_id=TSS5495;nbOverlaps=0;ID=YLR321C;Name=SFH1
XII	S-MART	transcript	777628	777942	.	+	.	seqedit=false;p_id=P4625;gene_id=YLR322W;tss_id=TSS6431;nbOverlaps=0;ID=YLR322W;Name=VPS65
XII	S-MART	transcript	778173	778952	.	-	.	seqedit=false;p_id=P3083;gene_id=YLR323C;tss_id=TSS2067;nbOverlaps=0;ID=YLR323C;Name=CWC24
XII	S-MART	transcript	779215	780786	.	+	.	seqedit=false;p_id=P3697;gene_id=YLR324W;tss_id=TSS683;nbOverlaps=0;ID=YLR324W;Name=PEX30
XIII	S-MART	transcript	509734	510348	.	-	.	seqedit=false;p_id=P796;gene_id=YMR121C;tss_id=TSS6165;nbOverlaps=0;ID=YMR121C;Name=RPL15B
XII	S-MART	transcript	781143	781379	.	-	.	seqedit=false;p_id=P6671;gene_id=YLR325C;tss_id=TSS3807;nbOverlaps=0;ID=YLR325C;Name=RPL38
XII	S-MART	transcript	783127	783387	.	-	.	seqedit=false;p_id=P3321;gene_id=YLR327C;tss_id=TSS6628;nbOverlaps=0;ID=YLR327C;Name=TMA10
XVI	S-MART	transcript	255913	256767	.	-	.	seqedit=false;p_id=P1780;gene_id=YPL156C;tss_id=TSS1866;nbOverlaps=0;ID=YPL156C;Name=PRM4
XII	S-MART	transcript	782174	782896	.	+	.	seqedit=false;p_id=P5269;gene_id=YLR326W;tss_id=TSS3798;nbOverlaps=0;ID=YLR326W;Name=YLR326W
XII	S-MART	transcript	784913	786118	.	+	.	seqedit=false;p_id=P3688;gene_id=YLR328W;tss_id=TSS939;nbOverlaps=0;ID=YLR328W;Name=NMA1
XII	S-MART	transcript	786442	787333	.	+	.	seqedit=false;p_id=P2679;gene_id=YLR329W;tss_id=TSS5461;nbOverlaps=0;ID=YLR329W;Name=REC102
XII	S-MART	exon	786442	786615	.	+	.	ID=YLR329W-exon1;Name=REC102-exon1;Parent=YLR329W
XII	S-MART	exon	786713	787333	.	+	.	ID=YLR329W-exon2;Name=REC102-exon2;Parent=YLR329W
XV	S-MART	transcript	266264	267529	.	-	.	seqedit=false;p_id=P6439;gene_id=YOL031C;tss_id=TSS5850;nbOverlaps=0;ID=YOL031C;Name=SIL1
XIII	S-MART	transcript	511315	511569	.	+	.	seqedit=false;p_id=P4424;gene_id=YMR122W-A;tss_id=TSS1877;nbOverlaps=0;ID=YMR122W-A;Name=YMR122W-A
XV	S-MART	transcript	265429	266169	.	+	.	seqedit=false;p_id=P4178;gene_id=YOL032W;tss_id=TSS4964;nbOverlaps=0;ID=YOL032W;Name=OPI10
XII	S-MART	transcript	787664	789679	.	+	.	seqedit=false;p_id=P1907;gene_id=YLR330W;tss_id=TSS2700;nbOverlaps=0;ID=YLR330W;Name=CHS5
XII	S-MART	transcript	549012	549356	.	+	.	seqedit=false;p_id=P2511;gene_id=YLR200W;tss_id=TSS4279;nbOverlaps=0;ID=YLR200W;Name=YKE2
XII	S-MART	transcript	790669	791046	.	-	.	seqedit=false;p_id=P2616;gene_id=YLR331C;tss_id=TSS344;nbOverlaps=0;ID=YLR331C;Name=JIP3
XII	S-MART	transcript	790676	791806	.	+	.	seqedit=false;p_id=P6331;gene_id=YLR332W;tss_id=TSS1487;nbOverlaps=0;ID=YLR332W;Name=MID2
XII	S-MART	transcript	795573	795899	.	-	.	seqedit=false;p_id=P831;gene_id=YLR333C;tss_id=TSS139;nbOverlaps=0;ID=YLR333C;Name=RPS25B
XII	S-MART	transcript	797430	799592	.	+	.	seqedit=false;p_id=P3537;gene_id=YLR335W;tss_id=TSS6339;nbOverlaps=0;ID=YLR335W;Name=NUP2
XVI	S-MART	transcript	875368	875997	.	+	.	seqedit=false;p_id=P1752;gene_id=YPR165W;tss_id=TSS500;nbOverlaps=0;ID=YPR165W;Name=RHO1
XIII	S-MART	transcript	510701	511075	.	-	.	seqedit=false;p_id=P4947;gene_id=YMR122C;tss_id=TSS5636;nbOverlaps=0;ID=YMR122C;Name=YMR122C
XII	S-MART	transcript	796698	797078	.	-	.	seqedit=false;p_id=P3648;gene_id=YLR334C;tss_id=TSS624;nbOverlaps=0;ID=YLR334C;Name=YLR334C
XII	S-MART	transcript	799697	802396	.	-	.	seqedit=false;p_id=P2296;gene_id=YLR336C;tss_id=TSS2355;nbOverlaps=0;ID=YLR336C;Name=SGD1
XII	S-MART	transcript	549511	550293	.	-	.	seqedit=false;p_id=P4006;gene_id=YLR201C;tss_id=TSS3968;nbOverlaps=0;ID=YLR201C;Name=COQ9
XII	S-MART	transcript	802653	805106	.	-	.	seqedit=false;p_id=P5044;gene_id=YLR337C;tss_id=TSS2840;nbOverlaps=0;ID=YLR337C;Name=VRP1
XII	S-MART	transcript	804346	805203	.	+	.	seqedit=false;p_id=P953;gene_id=YLR338W;tss_id=TSS6128;nbOverlaps=0;ID=YLR338W;Name=OPI9
XII	S-MART	transcript	805887	806825	.	+	.	seqedit=false;p_id=P6002;gene_id=YLR340W;tss_id=TSS6998;nbOverlaps=0;ID=YLR340W;Name=RPP0
XII	S-MART	transcript	805784	806335	.	-	.	seqedit=false;p_id=P1107;gene_id=YLR339C;tss_id=TSS424;nbOverlaps=0;ID=YLR339C;Name=YLR339C
XIII	S-MART	transcript	513593	513961	.	+	.	seqedit=false;p_id=P4648;gene_id=YMR123W;tss_id=TSS4697;nbOverlaps=0;ID=YMR123W;Name=PKR1
XII	S-MART	transcript	807385	808818	.	+	.	seqedit=false;p_id=P3356;gene_id=YLR341W;tss_id=TSS6635;nbOverlaps=0;ID=YLR341W;Name=SPO77
XII	S-MART	transcript	809997	815627	.	+	.	seqedit=false;p_id=P1634;gene_id=YLR342W;tss_id=TSS6861;nbOverlaps=0;ID=YLR342W;Name=FKS1
XVI	S-MART	transcript	250907	251668	.	-	.	seqedit=false;p_id=P949;gene_id=YPL159C;tss_id=TSS2194;nbOverlaps=0;ID=YPL159C;Name=PET20
XII	S-MART	transcript	815810	815983	.	+	.	seqedit=false;p_id=P4767;gene_id=YLR342W-A;tss_id=TSS7035;nbOverlaps=0;ID=YLR342W-A;Name=YLR342W-A
XII	S-MART	transcript	816094	817761	.	+	.	seqedit=false;p_id=P3269;gene_id=YLR343W;tss_id=TSS4308;nbOverlaps=0;ID=YLR343W;Name=GAS2
XII	S-MART	transcript	819312	820142	.	+	.	seqedit=false;p_id=P5680;gene_id=YLR344W;tss_id=TSS6896;nbOverlaps=0;ID=YLR344W;Name=RPL26A
XII	S-MART	exon	819312	819330	.	+	.	ID=YLR344W-exon1;Name=RPL26A-exon1;Parent=YLR344W
XII	S-MART	exon	819778	820142	.	+	.	ID=YLR344W-exon2;Name=RPL26A-exon2;Parent=YLR344W
XV	S-MART	transcript	241614	242747	.	-	.	seqedit=false;p_id=P6250;gene_id=YOL047C;tss_id=TSS5565;nbOverlaps=0;ID=YOL047C;Name=YOL047C
XV	S-MART	exon	241614	242441	.	-	.	ID=YOL047C-exon1;Name=YOL047C-exon1;Parent=YOL047C
XV	S-MART	exon	242505	242747	.	-	.	ID=YOL047C-exon2;Name=YOL047C-exon2;Parent=YOL047C
XII	S-MART	transcript	593438	598706	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P6563;gene_id=YLR227W-B;tss_id=TSS2667;nbOverlaps=31;ID=YLR227W-B;Name=YLR227W-B
XII	S-MART	exon	593438	594742	.	+	.	ID=YLR227W-B-exon1;Name=YLR227W-B-exon1;Parent=YLR227W-B
XII	S-MART	exon	594744	598706	.	+	.	ID=YLR227W-B-exon2;Name=YLR227W-B-exon2;Parent=YLR227W-B
XIII	S-MART	transcript	517539	520446	.	+	.	seqedit=false;p_id=P149;gene_id=YMR125W;tss_id=TSS306;nbOverlaps=0;ID=YMR125W;Name=STO1
XIII	S-MART	exon	517539	517563	.	+	.	ID=YMR125W-exon1;Name=STO1-exon1;Parent=YMR125W
XIII	S-MART	exon	517886	520446	.	+	.	ID=YMR125W-exon2;Name=STO1-exon2;Parent=YMR125W
XII	S-MART	transcript	823828	826413	.	-	.	seqedit=false;p_id=P1268;gene_id=YLR347C;tss_id=TSS1748;nbOverlaps=0;ID=YLR347C;Name=KAP95
XVI	S-MART	transcript	246990	250262	.	+	.	seqedit=false;p_id=P1069;gene_id=YPL160W;tss_id=TSS1542;nbOverlaps=0;ID=YPL160W;Name=CDC60
XII	S-MART	transcript	820511	822040	.	+	.	seqedit=false;p_id=P3593;gene_id=YLR345W;tss_id=TSS1849;nbOverlaps=0;ID=YLR345W;Name=YLR345W
XII	S-MART	transcript	822287	822592	.	-	.	seqedit=false;p_id=P889;gene_id=YLR346C;tss_id=TSS6507;nbOverlaps=0;ID=YLR346C;Name=YLR346C
XII	S-MART	transcript	824789	824929	.	+	.	seqedit=false;p_id=P3899;gene_id=YLR347W-A;tss_id=TSS3625;nbOverlaps=0;ID=YLR347W-A;Name=YLR347W-A
XII	S-MART	transcript	826977	827873	.	-	.	seqedit=false;p_id=P5200;gene_id=YLR348C;tss_id=TSS2008;nbOverlaps=0;ID=YLR348C;Name=DIC1
VIII	S-MART	transcript	48763	50580	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:93:7374:6428#0--HWUSI-EAS1656_0009_FC:3:70:5323:19057#0--HWUSI-EAS1656_0009_;p_id=P954;gene_id=YHL028W;tss_id=TSS82;nbOverlaps=51;ID=YHL028W;Name=WSC4
XII	S-MART	transcript	828730	829380	.	+	.	seqedit=false;p_id=P1127;gene_id=YLR350W;tss_id=TSS1687;nbOverlaps=0;ID=YLR350W;Name=ORM2
XII	S-MART	transcript	827521	828027	.	+	.	seqedit=false;p_id=P2326;gene_id=YLR349W;tss_id=TSS1842;nbOverlaps=0;ID=YLR349W;Name=YLR349W
XVI	S-MART	transcript	244319	246220	.	-	.	seqedit=false;p_id=P1966;gene_id=YPL161C;tss_id=TSS2776;nbOverlaps=0;ID=YPL161C;Name=BEM4
XII	S-MART	transcript	829489	830364	.	-	.	seqedit=false;p_id=P5476;gene_id=YLR351C;tss_id=TSS6267;nbOverlaps=0;ID=YLR351C;Name=NIT3
XII	S-MART	transcript	834352	836163	.	+	.	seqedit=false;p_id=P4379;gene_id=YLR353W;tss_id=TSS258;nbOverlaps=0;ID=YLR353W;Name=BUD8
XII	S-MART	transcript	831116	833539	.	+	.	seqedit=false;p_id=P3296;gene_id=YLR352W;tss_id=TSS1813;nbOverlaps=0;ID=YLR352W;Name=YLR352W
XII	S-MART	transcript	836350	837357	.	-	.	seqedit=false;p_id=P4269;gene_id=YLR354C;tss_id=TSS2546;nbOverlaps=0;ID=YLR354C;Name=TAL1
VIII	S-MART	transcript	45929	47968	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:9:11568:15892#0--HWUSI-EAS1656_0009_FC:3:77:16579:10907#0--HWUSI-EAS1656_000;p_id=P765;gene_id=YHL029C;tss_id=TSS5737;nbOverlaps=249;ID=YHL029C;Name=OCA5
XII	S-MART	transcript	838066	839253	.	-	.	seqedit=false;p_id=P64;gene_id=YLR355C;tss_id=TSS4711;nbOverlaps=0;ID=YLR355C;Name=ILV5
XII	S-MART	transcript	840321	840914	.	+	.	seqedit=false;p_id=P5616;gene_id=YLR356W;tss_id=TSS6236;nbOverlaps=0;ID=YLR356W;Name=ATG33
XVI	S-MART	transcript	241918	242700	.	-	.	seqedit=false;p_id=P3736;gene_id=YPL163C;tss_id=TSS1580;nbOverlaps=0;ID=YPL163C;Name=SVS1
XII	S-MART	transcript	841331	844000	.	+	.	seqedit=false;p_id=P5805;gene_id=YLR357W;tss_id=TSS4612;nbOverlaps=0;ID=YLR357W;Name=RSC2
XII	S-MART	transcript	844282	845730	.	+	.	seqedit=false;p_id=P4578;gene_id=YLR359W;tss_id=TSS5310;nbOverlaps=0;ID=YLR359W;Name=ADE13
XII	S-MART	transcript	843487	844050	.	-	.	seqedit=false;p_id=P1616;gene_id=YLR358C;tss_id=TSS2766;nbOverlaps=0;ID=YLR358C;Name=YLR358C
XII	S-MART	transcript	846103	847422	.	+	.	seqedit=false;p_id=P2938;gene_id=YLR360W;tss_id=TSS6817;nbOverlaps=0;ID=YLR360W;Name=VPS38
XVI	S-MART	transcript	876282	876629	.	-	.	seqedit=false;p_id=P6685;gene_id=YPR166C;tss_id=TSS5999;nbOverlaps=0;ID=YPR166C;Name=MRP2
XI	S-MART	transcript	194478	194999	.	+	.	seqedit=false;p_id=P6446;gene_id=YKL131W;tss_id=TSS3578;nbOverlaps=0;ID=YKL131W;Name=YKL131W
XII	S-MART	transcript	847388	849124	.	-	.	seqedit=false;p_id=P2237;gene_id=YLR361C;tss_id=TSS3804;nbOverlaps=0;ID=YLR361C;Name=DCR2
XII	S-MART	transcript	849383	849679	.	-	.	seqedit=false;p_id=P332;gene_id=YLR361C-A;tss_id=TSS1541;nbOverlaps=0;ID=YLR361C-A;Name=YLR361C-A
VI	S-MART	transcript	223710	223973	.	-	.	seqedit=false;p_id=P1360;gene_id=YFR032C-B;tss_id=TSS2101;nbOverlaps=0;ID=YFR032C-B;Name=YFR032C-B
XII	S-MART	transcript	849866	852019	.	+	.	seqedit=false;p_id=P4052;gene_id=YLR362W;tss_id=TSS3935;nbOverlaps=0;ID=YLR362W;Name=STE11
XII	S-MART	transcript	852495	853151	.	-	.	seqedit=false;p_id=P4057;gene_id=YLR363C;tss_id=TSS1787;nbOverlaps=0;ID=YLR363C;Name=NMD4
XII	S-MART	transcript	853461	853718	.	+	.	seqedit=false;p_id=P1991;gene_id=YLR363W-A;tss_id=TSS2061;nbOverlaps=0;ID=YLR363W-A;Name=YLR363W-A
XII	S-MART	transcript	855523	855645	.	-	.	seqedit=false;p_id=P6242;gene_id=YLR364C-A;tss_id=TSS1701;nbOverlaps=0;ID=YLR364C-A;Name=YLR364C-A
VIII	S-MART	transcript	39074	39535	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:1465:3135#0--HWUSI-EAS1656_0009_FC:3:29:7951:14371#0--HWUSI-EAS1656_0009_;p_id=P398;gene_id=YHL030W-A;tss_id=TSS2807;nbOverlaps=13;ID=YHL030W-A;Name=YHL030W-A
XII	S-MART	transcript	854062	854391	.	+	.	seqedit=false;p_id=P5965;gene_id=YLR364W;tss_id=TSS88;nbOverlaps=0;ID=YLR364W;Name=GRX8
XII	S-MART	transcript	856442	857317	.	+	.	seqedit=false;p_id=P6473;gene_id=YLR367W;tss_id=TSS4458;nbOverlaps=0;ID=YLR367W;Name=RPS22B
XII	S-MART	exon	856442	856574	.	+	.	ID=YLR367W-exon1;Name=RPS22B-exon1;Parent=YLR367W
XII	S-MART	exon	857058	857317	.	+	.	ID=YLR367W-exon2;Name=RPS22B-exon2;Parent=YLR367W
VI	S-MART	transcript	224326	224769	.	-	.	seqedit=false;p_id=P4716;gene_id=YFR033C;tss_id=TSS6787;nbOverlaps=0;ID=YFR033C;Name=QCR6
XII	S-MART	transcript	855199	855531	.	+	.	seqedit=false;p_id=P61;gene_id=YLR365W;tss_id=TSS3024;nbOverlaps=0;ID=YLR365W;Name=YLR365W
XII	S-MART	transcript	855538	855843	.	+	.	seqedit=false;p_id=P6204;gene_id=YLR366W;tss_id=TSS1730;nbOverlaps=0;ID=YLR366W;Name=YLR366W
XV	S-MART	transcript	194970	196337	.	+	.	seqedit=false;p_id=P5361;gene_id=YOL072W;tss_id=TSS1574;nbOverlaps=0;ID=YOL072W;Name=THP1
XV	S-MART	transcript	784857	786744	.	+	.	seqedit=false;p_id=P1056;gene_id=YOR239W;tss_id=TSS5324;nbOverlaps=0;ID=YOR239W;Name=ABP140
XV	S-MART	exon	784857	785687	.	+	.	ID=YOR239W-exon1;Name=ABP140-exon1;Parent=YOR239W
XV	S-MART	exon	785689	786744	.	+	.	ID=YOR239W-exon2;Name=ABP140-exon2;Parent=YOR239W
VIII	S-MART	transcript	38815	39486	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:50:11052:16172#0--HWUSI-EAS1656_0009_FC:3:36:5631:3997#0--HWUSI-EAS1656_0009;p_id=P257;gene_id=YHL031C;tss_id=TSS1294;nbOverlaps=22;ID=YHL031C;Name=GOS1
XII	S-MART	transcript	857540	859336	.	+	.	seqedit=false;p_id=P5732;gene_id=YLR368W;tss_id=TSS4517;nbOverlaps=0;ID=YLR368W;Name=MDM30
VIII	S-MART	transcript	149225	149680	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:8457:20865#0--HWUSI-EAS1656_0009_FC:3:91:14330:2796#0--HWUSI-EAS1656_0009;p_id=P6048;gene_id=YHR021W-A;tss_id=TSS2324;nbOverlaps=9;ID=YHR021W-A;Name=ECM12
XII	S-MART	transcript	859552	861525	.	+	.	seqedit=false;p_id=P2635;gene_id=YLR369W;tss_id=TSS6928;nbOverlaps=0;ID=YLR369W;Name=SSQ1
XII	S-MART	transcript	554578	556419	.	+	.	seqedit=false;p_id=P778;gene_id=YLR206W;tss_id=TSS4540;nbOverlaps=0;ID=YLR206W;Name=ENT2
II	S-MART	transcript	309081	310313	.	-	.	seqedit=false;p_id=P109;gene_id=YBR036C;tss_id=TSS2710;nbOverlaps=0;ID=YBR036C;Name=CSG2
II	S-MART	transcript	537876	539705	.	+	.	seqedit=false;p_id=P1244;gene_id=YBR148W;tss_id=TSS4304;nbOverlaps=0;ID=YBR148W;Name=YSW1
II	S-MART	transcript	539987	541021	.	+	.	seqedit=false;p_id=P6582;gene_id=YBR149W;tss_id=TSS217;nbOverlaps=0;ID=YBR149W;Name=ARA1
II	S-MART	transcript	541209	544493	.	-	.	seqedit=false;p_id=P6684;gene_id=YBR150C;tss_id=TSS5911;nbOverlaps=0;ID=YBR150C;Name=TBS1
VIII	S-MART	transcript	36379	38508	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:70:3342:10621#0--HWUSI-EAS1656_0009_FC:3:53:12496:7051#0--HWUSI-EAS1656_0009;p_id=P2393;gene_id=YHL032C;tss_id=TSS3363;nbOverlaps=122;ID=YHL032C;Name=GUT1
II	S-MART	transcript	545028	545978	.	+	.	seqedit=false;p_id=P4441;gene_id=YBR151W;tss_id=TSS2887;nbOverlaps=0;ID=YBR151W;Name=APD1
II	S-MART	transcript	546376	547251	.	+	.	seqedit=false;p_id=P6627;gene_id=YBR152W;tss_id=TSS4362;nbOverlaps=0;ID=YBR152W;Name=SPP381
VI	S-MART	transcript	226022	226309	.	+	.	seqedit=false;p_id=P6350;gene_id=YFR034W-A;tss_id=TSS4794;nbOverlaps=0;ID=YFR034W-A;Name=YFR034W-A
II	S-MART	transcript	547460	548194	.	+	.	seqedit=false;p_id=P5124;gene_id=YBR153W;tss_id=TSS4031;nbOverlaps=0;ID=YBR153W;Name=RIB7
II	S-MART	transcript	548362	549009	.	-	.	seqedit=false;p_id=P416;gene_id=YBR154C;tss_id=TSS2659;nbOverlaps=0;ID=YBR154C;Name=RPB5
II	S-MART	transcript	549771	550928	.	+	.	seqedit=false;p_id=P1064;gene_id=YBR155W;tss_id=TSS5219;nbOverlaps=0;ID=YBR155W;Name=CNS1
II	S-MART	transcript	551104	553200	.	-	.	seqedit=false;p_id=P59;gene_id=YBR156C;tss_id=TSS2524;nbOverlaps=0;ID=YBR156C;Name=SLI15
VIII	S-MART	transcript	35255	36025	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:56:7225:4575#0--HWUSI-EAS1656_0009_FC:3:20:2597:13511#0--HWUSI-EAS1656_0009_;p_id=P5835;gene_id=YHL033C;tss_id=TSS778;nbOverlaps=3776;ID=YHL033C;Name=RPL8A
II	S-MART	transcript	553543	554310	.	-	.	seqedit=false;p_id=P6688;gene_id=YBR157C;tss_id=TSS6400;nbOverlaps=0;ID=YBR157C;Name=ICS2
II	S-MART	transcript	556549	558198	.	+	.	seqedit=false;p_id=P4617;gene_id=YBR158W;tss_id=TSS3429;nbOverlaps=0;ID=YBR158W;Name=AMN1
VI	S-MART	transcript	226963	227337	.	+	.	seqedit=false;p_id=P291;gene_id=YFR036W;tss_id=TSS1435;nbOverlaps=0;ID=YFR036W;Name=CDC26
II	S-MART	transcript	558685	559728	.	+	.	seqedit=false;p_id=P5078;gene_id=YBR159W;tss_id=TSS321;nbOverlaps=0;ID=YBR159W;Name=IFA38
II	S-MART	transcript	560078	560974	.	+	.	seqedit=false;p_id=P6373;gene_id=YBR160W;tss_id=TSS6181;nbOverlaps=0;ID=YBR160W;Name=CDC28
II	S-MART	transcript	561634	562764	.	+	.	seqedit=false;p_id=P734;gene_id=YBR161W;tss_id=TSS3985;nbOverlaps=0;ID=YBR161W;Name=CSH1
II	S-MART	transcript	563203	564570	.	-	.	seqedit=false;p_id=P4816;gene_id=YBR162C;tss_id=TSS3157;nbOverlaps=0;ID=YBR162C;Name=TOS1
XVI	S-MART	transcript	876847	877632	.	-	.	seqedit=false;p_id=P1896;gene_id=YPR167C;tss_id=TSS1334;nbOverlaps=0;ID=YPR167C;Name=MET16
VIII	S-MART	transcript	33193	34077	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:16290:12440#0--HWUSI-EAS1656_0009_FC:3:38:7502:14769#0--HWUSI-EAS1656_00;p_id=P6613;gene_id=YHL034C;tss_id=TSS1499;nbOverlaps=479;ID=YHL034C;Name=SBP1
II	S-MART	transcript	565231	565428	.	+	.	seqedit=false;p_id=P5140;gene_id=YBR162W-A;tss_id=TSS6052;nbOverlaps=0;ID=YBR162W-A;Name=YSY6
II	S-MART	transcript	565723	567480	.	+	.	seqedit=false;p_id=P3283;gene_id=YBR163W;tss_id=TSS5027;nbOverlaps=0;ID=YBR163W;Name=EXO5
XII	S-MART	transcript	560797	561732	.	-	.	seqedit=false;p_id=P4762;gene_id=YLR209C;tss_id=TSS156;nbOverlaps=0;ID=YLR209C;Name=PNP1
II	S-MART	transcript	567875	568426	.	-	.	seqedit=false;p_id=P4358;gene_id=YBR164C;tss_id=TSS3097;nbOverlaps=0;ID=YBR164C;Name=ARL1
II	S-MART	transcript	568852	569685	.	+	.	seqedit=false;p_id=P5353;gene_id=YBR165W;tss_id=TSS3738;nbOverlaps=0;ID=YBR165W;Name=UBS1
II	S-MART	transcript	569842	571200	.	-	.	seqedit=false;p_id=P6654;gene_id=YBR166C;tss_id=TSS6042;nbOverlaps=0;ID=YBR166C;Name=TYR1
II	S-MART	transcript	571468	571890	.	-	.	seqedit=false;p_id=P5787;gene_id=YBR167C;tss_id=TSS4893;nbOverlaps=0;ID=YBR167C;Name=POP7
VIII	S-MART	transcript	33176	33637	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:4:8813:17695#0--HWUSI-EAS1656_0009_FC:3:34:13556:17641#0--HWUSI-EAS1656_0009;p_id=P1328;gene_id=YHL034W-A;tss_id=TSS5962;nbOverlaps=304;ID=YHL034W-A;Name=YHL034W-A
II	S-MART	transcript	572371	573612	.	+	.	seqedit=false;p_id=P1381;gene_id=YBR168W;tss_id=TSS83;nbOverlaps=0;ID=YBR168W;Name=PEX32
II	S-MART	transcript	573915	575996	.	-	.	seqedit=false;p_id=P788;gene_id=YBR169C;tss_id=TSS2408;nbOverlaps=0;ID=YBR169C;Name=SSE2
VI	S-MART	transcript	227451	228101	.	+	.	seqedit=false;p_id=P6183;gene_id=YFR036W-A;tss_id=TSS6205;nbOverlaps=0;ID=YFR036W-A;Name=YFR036W-A
II	S-MART	transcript	576344	578086	.	-	.	seqedit=false;p_id=P4220;gene_id=YBR170C;tss_id=TSS3212;nbOverlaps=0;ID=YBR170C;Name=NPL4
II	S-MART	transcript	578364	578984	.	+	.	seqedit=false;p_id=P4823;gene_id=YBR171W;tss_id=TSS5062;nbOverlaps=0;ID=YBR171W;Name=SEC66
II	S-MART	transcript	579150	581372	.	-	.	seqedit=false;p_id=P993;gene_id=YBR172C;tss_id=TSS608;nbOverlaps=0;ID=YBR172C;Name=SMY2
II	S-MART	transcript	581726	582172	.	-	.	seqedit=false;p_id=P6516;gene_id=YBR173C;tss_id=TSS3414;nbOverlaps=0;ID=YBR173C;Name=UMP1
XIII	S-MART	transcript	534944	535570	.	-	.	seqedit=false;p_id=P951;gene_id=YMR132C;tss_id=TSS2962;nbOverlaps=0;ID=YMR132C;Name=JLP2
II	S-MART	transcript	582408	583355	.	+	.	seqedit=false;p_id=P1933;gene_id=YBR175W;tss_id=TSS6745;nbOverlaps=0;ID=YBR175W;Name=SWD3
II	S-MART	transcript	582338	582652	.	-	.	seqedit=false;p_id=P4670;gene_id=YBR174C;tss_id=TSS6045;nbOverlaps=0;ID=YBR174C;Name=YBR174C
XII	S-MART	transcript	564860	566281	.	-	.	seqedit=false;p_id=P2441;gene_id=YLR212C;tss_id=TSS3961;nbOverlaps=0;ID=YLR212C;Name=TUB4
II	S-MART	transcript	583720	584658	.	+	.	seqedit=false;p_id=P4800;gene_id=YBR176W;tss_id=TSS2916;nbOverlaps=0;ID=YBR176W;Name=ECM31
II	S-MART	transcript	310565	311452	.	-	.	seqedit=false;p_id=P142;gene_id=YBR037C;tss_id=TSS4378;nbOverlaps=0;ID=YBR037C;Name=SCO1
II	S-MART	transcript	584807	586162	.	-	.	seqedit=false;p_id=P4163;gene_id=YBR177C;tss_id=TSS4242;nbOverlaps=0;ID=YBR177C;Name=EHT1
II	S-MART	transcript	586547	589114	.	-	.	seqedit=false;p_id=P1012;gene_id=YBR179C;tss_id=TSS4299;nbOverlaps=0;ID=YBR179C;Name=FZO1
II	S-MART	transcript	586071	586445	.	+	.	seqedit=false;p_id=P3212;gene_id=YBR178W;tss_id=TSS12;nbOverlaps=0;ID=YBR178W;Name=YBR178W
XI	S-MART	transcript	182958	184544	.	+	.	seqedit=false;p_id=P5165;gene_id=YKL139W;tss_id=TSS304;nbOverlaps=0;ID=YKL139W;Name=CTK1
II	S-MART	transcript	589741	591459	.	+	.	seqedit=false;p_id=P5745;gene_id=YBR180W;tss_id=TSS4573;nbOverlaps=0;ID=YBR180W;Name=DTR1
II	S-MART	transcript	591712	592774	.	-	.	seqedit=false;p_id=P4086;gene_id=YBR181C;tss_id=TSS1679;nbOverlaps=0;ID=YBR181C;Name=RPS6B
II	S-MART	exon	591712	592416	.	-	.	ID=YBR181C-exon1;Name=RPS6B-exon1;Parent=YBR181C
II	S-MART	exon	592769	592774	.	-	.	ID=YBR181C-exon2;Name=RPS6B-exon2;Parent=YBR181C
XII	S-MART	transcript	563792	564531	.	-	.	seqedit=false;p_id=P3596;gene_id=YLR211C;tss_id=TSS3991;nbOverlaps=0;ID=YLR211C;Name=YLR211C
XII	S-MART	exon	563792	564454	.	-	.	ID=YLR211C-exon1;Name=YLR211C-exon1;Parent=YLR211C
XII	S-MART	exon	564514	564531	.	-	.	ID=YLR211C-exon2;Name=YLR211C-exon2;Parent=YLR211C
XI	S-MART	transcript	149386	150687	.	-	.	seqedit=false;p_id=P1430;gene_id=YKL161C;tss_id=TSS4155;nbOverlaps=0;ID=YKL161C;Name=KDX1
II	S-MART	transcript	593506	594864	.	-	.	seqedit=false;p_id=P650;gene_id=YBR182C;tss_id=TSS2933;nbOverlaps=0;ID=YBR182C;Name=SMP1
II	S-MART	transcript	595361	595555	.	-	.	seqedit=false;p_id=P5868;gene_id=YBR182C-A;tss_id=TSS392;nbOverlaps=0;ID=YBR182C-A;Name=YBR182C-A
VIII	S-MART	transcript	23617	25509	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:11287:12643#0--HWUSI-EAS1656_0009_FC:3:87:11791:21068#0--HWUSI-EAS1656_000;p_id=P5538;gene_id=YHL038C;tss_id=TSS6990;nbOverlaps=88;ID=YHL038C;Name=CBP2
II	S-MART	transcript	596115	597065	.	+	.	seqedit=false;p_id=P2131;gene_id=YBR183W;tss_id=TSS889;nbOverlaps=0;ID=YBR183W;Name=YPC1
II	S-MART	transcript	599123	599959	.	-	.	seqedit=false;p_id=P6287;gene_id=YBR185C;tss_id=TSS6427;nbOverlaps=0;ID=YBR185C;Name=MBA1
XVI	S-MART	transcript	224353	225741	.	-	.	seqedit=false;p_id=P2732;gene_id=YPL172C;tss_id=TSS364;nbOverlaps=0;ID=YPL172C;Name=COX10
II	S-MART	transcript	597363	598934	.	+	.	seqedit=false;p_id=P164;gene_id=YBR184W;tss_id=TSS2819;nbOverlaps=0;ID=YBR184W;Name=YBR184W
II	S-MART	transcript	600553	602360	.	+	.	seqedit=false;p_id=P5919;gene_id=YBR186W;tss_id=TSS888;nbOverlaps=0;ID=YBR186W;Name=PCH2
II	S-MART	exon	600553	602103	.	+	.	ID=YBR186W-exon1;Name=PCH2-exon1;Parent=YBR186W
II	S-MART	exon	602217	602360	.	+	.	ID=YBR186W-exon2;Name=PCH2-exon2;Parent=YBR186W
XVI	S-MART	transcript	878076	878549	.	+	.	seqedit=false;p_id=P545;gene_id=YPR168W;tss_id=TSS4002;nbOverlaps=0;ID=YPR168W;Name=NUT2
XI	S-MART	transcript	179667	180263	.	+	.	seqedit=false;p_id=P5023;gene_id=YKL141W;tss_id=TSS6302;nbOverlaps=0;ID=YKL141W;Name=SDH3
II	S-MART	transcript	602634	603476	.	+	.	seqedit=false;p_id=P842;gene_id=YBR187W;tss_id=TSS19;nbOverlaps=0;ID=YBR187W;Name=GDT1
II	S-MART	transcript	603685	604107	.	-	.	seqedit=false;p_id=P1213;gene_id=YBR188C;tss_id=TSS3291;nbOverlaps=0;ID=YBR188C;Name=NTC20
XVI	S-MART	transcript	223143	224036	.	+	.	seqedit=false;p_id=P169;gene_id=YPL173W;tss_id=TSS853;nbOverlaps=0;ID=YPL173W;Name=MRPL40
II	S-MART	transcript	604508	605508	.	+	.	seqedit=false;p_id=P6186;gene_id=YBR189W;tss_id=TSS1113;nbOverlaps=0;ID=YBR189W;Name=RPS9B
II	S-MART	exon	604508	604514	.	+	.	ID=YBR189W-exon1;Name=RPS9B-exon1;Parent=YBR189W
II	S-MART	exon	604928	605508	.	+	.	ID=YBR189W-exon2;Name=RPS9B-exon2;Parent=YBR189W
II	S-MART	transcript	606270	607140	.	+	.	seqedit=false;p_id=P4726;gene_id=YBR191W;tss_id=TSS2369;nbOverlaps=0;ID=YBR191W;Name=RPL21A
II	S-MART	exon	606270	606280	.	+	.	ID=YBR191W-exon1;Name=RPL21A-exon1;Parent=YBR191W
II	S-MART	exon	606669	607140	.	+	.	ID=YBR191W-exon2;Name=RPL21A-exon2;Parent=YBR191W
XI	S-MART	transcript	178515	179174	.	+	.	seqedit=false;p_id=P5002;gene_id=YKL142W;tss_id=TSS2304;nbOverlaps=0;ID=YKL142W;Name=MRP8
II	S-MART	transcript	605966	606277	.	+	.	seqedit=false;p_id=P2598;gene_id=YBR190W;tss_id=TSS45;nbOverlaps=0;ID=YBR190W;Name=YBR190W
VI	S-MART	transcript	237368	238255	.	-	.	seqedit=false;p_id=P5304;gene_id=YFR041C;tss_id=TSS6087;nbOverlaps=0;ID=YFR041C;Name=ERJ5
II	S-MART	transcript	607149	607223	.	+	.	seqedit=false;p_id=P5516;gene_id=YBR191W-A;tss_id=TSS3387;nbOverlaps=0;ID=YBR191W-A;Name=YBR191W-A
II	S-MART	transcript	607652	608785	.	+	.	seqedit=false;p_id=P4666;gene_id=YBR192W;tss_id=TSS2169;nbOverlaps=0;ID=YBR192W;Name=RIM2
II	S-MART	transcript	609082	609753	.	-	.	seqedit=false;p_id=P5071;gene_id=YBR193C;tss_id=TSS6371;nbOverlaps=0;ID=YBR193C;Name=MED8
XI	S-MART	transcript	176781	178172	.	+	.	seqedit=false;p_id=P2216;gene_id=YKL143W;tss_id=TSS6749;nbOverlaps=0;ID=YKL143W;Name=LTV1
II	S-MART	transcript	610038	610409	.	+	.	seqedit=false;p_id=P4436;gene_id=YBR194W;tss_id=TSS3559;nbOverlaps=0;ID=YBR194W;Name=AIM4
II	S-MART	transcript	610614	611882	.	-	.	seqedit=false;p_id=P2476;gene_id=YBR195C;tss_id=TSS4180;nbOverlaps=0;ID=YBR195C;Name=MSI1
VI	S-MART	transcript	238458	239060	.	+	.	seqedit=false;p_id=P2514;gene_id=YFR042W;tss_id=TSS418;nbOverlaps=0;ID=YFR042W;Name=KEG1
II	S-MART	transcript	612236	613900	.	-	.	seqedit=false;p_id=P1325;gene_id=YBR196C;tss_id=TSS850;nbOverlaps=0;ID=YBR196C;Name=PGI1
II	S-MART	transcript	311898	314789	.	+	.	seqedit=false;p_id=P6690;gene_id=YBR038W;tss_id=TSS5856;nbOverlaps=0;ID=YBR038W;Name=CHS2
II	S-MART	transcript	614024	614173	.	-	.	seqedit=false;p_id=P3579;gene_id=YBR196C-A;tss_id=TSS4940;nbOverlaps=0;ID=YBR196C-A;Name=YBR196C-A
II	S-MART	transcript	614526	614630	.	-	.	seqedit=false;p_id=P3767;gene_id=YBR196C-B;tss_id=TSS6330;nbOverlaps=0;ID=YBR196C-B;Name=YBR196C-B
IV	S-MART	transcript	1530863	1531342	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_FC:3:12:4982:1665#0--HWUSI-EAS1656_0009_F;p_id=P1084;gene_id=YDR545C-A;tss_id=TSS6292;nbOverlaps=70;ID=YDR545C-A;Name=YDR545C-A
XI	S-MART	transcript	175843	176481	.	-	.	seqedit=false;p_id=P6682;gene_id=YKL144C;tss_id=TSS571;nbOverlaps=0;ID=YKL144C;Name=RPC25
VIII	S-MART	transcript	358478	358569	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:67:15428:10838#0--HWUSI-EAS1656_000;gene_id=tF(GAA)H2;tss_id=TSS2329;nbOverlaps=268;ID=tF(GAA)H2;Name=tF(GAA)H2
VIII	S-MART	exon	358478	358513	.	-	.	ID=tF(GAA)H2-exon1;Name=tF(GAA)H2-exon1;Parent=tF(GAA)H2
VIII	S-MART	exon	358533	358569	.	-	.	ID=tF(GAA)H2-exon2;Name=tF(GAA)H2-exon2;Parent=tF(GAA)H2
IV	S-MART	transcript	1129588	1130823	.	+	.	seqedit=false;p_id=P5384;gene_id=YDR331W;tss_id=TSS164;nbOverlaps=0;ID=YDR331W;Name=GPI8
IV	S-MART	transcript	1131001	1133070	.	+	.	seqedit=false;p_id=P4238;gene_id=YDR332W;tss_id=TSS4609;nbOverlaps=0;ID=YDR332W;Name=IRC3
IV	S-MART	transcript	1135932	1140476	.	+	.	seqedit=false;p_id=P3936;gene_id=YDR334W;tss_id=TSS2312;nbOverlaps=0;ID=YDR334W;Name=SWR1
IV	S-MART	transcript	1133260	1135431	.	-	.	seqedit=false;p_id=P4885;gene_id=YDR333C;tss_id=TSS5825;nbOverlaps=0;ID=YDR333C;Name=YDR333C
IV	S-MART	transcript	1141168	1144842	.	+	.	seqedit=false;p_id=P3530;gene_id=YDR335W;tss_id=TSS4385;nbOverlaps=0;ID=YDR335W;Name=MSN5
XI	S-MART	transcript	174213	175616	.	+	.	seqedit=false;p_id=P6037;gene_id=YKL145W;tss_id=TSS5202;nbOverlaps=0;ID=YKL145W;Name=RPT1
IV	S-MART	transcript	1146319	1147179	.	+	.	seqedit=false;p_id=P2459;gene_id=YDR337W;tss_id=TSS1044;nbOverlaps=0;ID=YDR337W;Name=MRPS28
IV	S-MART	transcript	1145092	1146036	.	+	.	seqedit=false;p_id=P1951;gene_id=YDR336W;tss_id=TSS2992;nbOverlaps=0;ID=YDR336W;Name=YDR336W
VII	S-MART	transcript	918512	919465	.	-	.	seqedit=false;p_id=P3087;gene_id=YGR213C;tss_id=TSS1612;nbOverlaps=0;ID=YGR213C;Name=RTA1
IV	S-MART	transcript	1149951	1150520	.	-	.	seqedit=false;p_id=P4517;gene_id=YDR339C;tss_id=TSS3090;nbOverlaps=0;ID=YDR339C;Name=FCF1
IV	S-MART	transcript	1147379	1149466	.	-	.	seqedit=false;p_id=P4367;gene_id=YDR338C;tss_id=TSS6320;nbOverlaps=0;ID=YDR338C;Name=YDR338C
IV	S-MART	transcript	1154216	1155928	.	-	.	seqedit=false;p_id=P433;gene_id=YDR342C;tss_id=TSS1126;nbOverlaps=0;ID=YDR342C;Name=HXT7
IV	S-MART	transcript	1150881	1151183	.	+	.	seqedit=false;p_id=P6063;gene_id=YDR340W;tss_id=TSS4822;nbOverlaps=0;ID=YDR340W;Name=YDR340W
XVI	S-MART	transcript	878690	880168	.	+	.	seqedit=false;p_id=P3662;gene_id=YPR169W;tss_id=TSS5505;nbOverlaps=0;ID=YPR169W;Name=JIP5
XI	S-MART	transcript	174958	175050	.	+	.	seqedit=false;p_id=P4962;gene_id=YKL145W-A;tss_id=TSS5524;nbOverlaps=0;ID=YKL145W-A;Name=YKL145W-A
IV	S-MART	transcript	1151803	1153626	.	-	.	seqedit=false;p_id=P3958;gene_id=YDR341C;tss_id=TSS2665;nbOverlaps=0;ID=YDR341C;Name=YDR341C
IV	S-MART	transcript	1159608	1161320	.	-	.	seqedit=false;p_id=P1505;gene_id=YDR343C;tss_id=TSS3416;nbOverlaps=0;ID=YDR343C;Name=HXT6
VII	S-MART	transcript	920575	921788	.	+	.	seqedit=false;p_id=P1231;gene_id=YGR214W;tss_id=TSS6800;nbOverlaps=0;ID=YGR214W;Name=RPS0A
VII	S-MART	exon	920575	920664	.	+	.	ID=YGR214W-exon1;Name=RPS0A-exon1;Parent=YGR214W
VII	S-MART	exon	921120	921788	.	+	.	ID=YGR214W-exon2;Name=RPS0A-exon2;Parent=YGR214W
IV	S-MART	transcript	1162957	1164660	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:88:13030:3632#0--HWUSI-EAS1656_0009_FC:3:71:16554:18972#0--HWUSI-EAS1656_000;p_id=P366;gene_id=YDR345C;tss_id=TSS2405;nbOverlaps=47;ID=YDR345C;Name=HXT3
IV	S-MART	transcript	1162006	1162449	.	-	.	seqedit=false;p_id=P3759;gene_id=YDR344C;tss_id=TSS690;nbOverlaps=0;ID=YDR344C;Name=YDR344C
IV	S-MART	transcript	1167214	1168659	.	-	.	seqedit=false;p_id=P1843;gene_id=YDR346C;tss_id=TSS100;nbOverlaps=0;ID=YDR346C;Name=SVF1
IV	S-MART	transcript	1169178	1170143	.	+	.	seqedit=false;p_id=P6137;gene_id=YDR347W;tss_id=TSS4037;nbOverlaps=0;ID=YDR347W;Name=MRP1
XI	S-MART	transcript	171783	173861	.	+	.	seqedit=false;p_id=P2950;gene_id=YKL146W;tss_id=TSS6832;nbOverlaps=0;ID=YKL146W;Name=AVT3
IV	S-MART	transcript	1172386	1174176	.	-	.	seqedit=false;p_id=P446;gene_id=YDR349C;tss_id=TSS4777;nbOverlaps=0;ID=YDR349C;Name=YPS7
IV	S-MART	transcript	1170326	1171825	.	-	.	seqedit=false;p_id=P5990;gene_id=YDR348C;tss_id=TSS4957;nbOverlaps=0;ID=YDR348C;Name=YDR348C
IV	S-MART	transcript	1176120	1178174	.	-	.	seqedit=false;p_id=P3382;gene_id=YDR350C;tss_id=TSS3872;nbOverlaps=0;ID=YDR350C;Name=ATP22
IV	S-MART	transcript	1178666	1181260	.	+	.	seqedit=false;p_id=P410;gene_id=YDR351W;tss_id=TSS2714;nbOverlaps=0;ID=YDR351W;Name=SBE2
IV	S-MART	transcript	1183299	1184258	.	+	.	seqedit=false;p_id=P3567;gene_id=YDR353W;tss_id=TSS4808;nbOverlaps=0;ID=YDR353W;Name=TRR1
IV	S-MART	transcript	1181801	1182754	.	+	.	seqedit=false;p_id=P1869;gene_id=YDR352W;tss_id=TSS3676;nbOverlaps=0;ID=YDR352W;Name=YDR352W
VIII	S-MART	transcript	13565	14272	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:107:9111:14746#0--HWUSI-EAS1656_0009_FC:3:14:16456:5199#0--HWUSI-EAS1656_000;p_id=P6133;gene_id=YHL044W;tss_id=TSS4072;nbOverlaps=31;ID=YHL044W;Name=YHL044W
IV	S-MART	transcript	1185139	1185282	.	-	.	seqedit=false;p_id=P2088;gene_id=YDR354C-A;tss_id=TSS5610;nbOverlaps=0;ID=YDR354C-A;Name=YDR354C-A
IV	S-MART	transcript	1184747	1185889	.	+	.	seqedit=false;p_id=P6670;gene_id=YDR354W;tss_id=TSS5762;nbOverlaps=0;ID=YDR354W;Name=TRP4
IV	S-MART	transcript	1186107	1188941	.	+	.	seqedit=false;p_id=P3517;gene_id=YDR356W;tss_id=TSS1980;nbOverlaps=0;ID=YDR356W;Name=SPC110
IV	S-MART	transcript	1186067	1186369	.	-	.	seqedit=false;p_id=P6270;gene_id=YDR355C;tss_id=TSS5588;nbOverlaps=0;ID=YDR355C;Name=YDR355C
IV	S-MART	transcript	1189199	1189567	.	-	.	seqedit=false;p_id=P967;gene_id=YDR357C;tss_id=TSS6905;nbOverlaps=0;ID=YDR357C;Name=CNL1
IV	S-MART	transcript	1190059	1191732	.	+	.	seqedit=false;p_id=P6556;gene_id=YDR358W;tss_id=TSS5499;nbOverlaps=0;ID=YDR358W;Name=GGA1
VIII	S-MART	transcript	12502	12849	.	+	.	seqedit=false;p_id=P3946;gene_id=YHL045W;tss_id=TSS6847;nbOverlaps=0;ID=YHL045W;Name=YHL045W
IV	S-MART	transcript	1191936	1194884	.	-	.	seqedit=false;p_id=P2546;gene_id=YDR359C;tss_id=TSS2128;nbOverlaps=0;ID=YDR359C;Name=EAF1
IV	S-MART	transcript	1194598	1195032	.	+	.	seqedit=false;p_id=P5172;gene_id=YDR360W;tss_id=TSS2043;nbOverlaps=0;ID=YDR360W;Name=OPI7
VII	S-MART	transcript	922175	922507	.	+	.	seqedit=false;p_id=P1618;gene_id=YGR215W;tss_id=TSS2216;nbOverlaps=0;ID=YGR215W;Name=RSM27
IV	S-MART	transcript	1195412	1196263	.	-	.	seqedit=false;p_id=P5700;gene_id=YDR361C;tss_id=TSS4795;nbOverlaps=0;ID=YDR361C;Name=BCP1
IV	S-MART	transcript	1196679	1198697	.	-	.	seqedit=false;p_id=P1513;gene_id=YDR362C;tss_id=TSS1656;nbOverlaps=0;ID=YDR362C;Name=TFC6
IV	S-MART	transcript	1199183	1200553	.	+	.	seqedit=false;p_id=P5614;gene_id=YDR363W;tss_id=TSS5412;nbOverlaps=0;ID=YDR363W;Name=ESC2
IV	S-MART	transcript	1202128	1202397	.	+	.	seqedit=false;p_id=P4862;gene_id=YDR363W-A;tss_id=TSS2947;nbOverlaps=0;ID=YDR363W-A;Name=SEM1
XIII	S-MART	transcript	550911	551135	.	+	.	seqedit=false;p_id=P713;gene_id=YMR141W-A;tss_id=TSS809;nbOverlaps=0;ID=YMR141W-A;Name=YMR141W-A
XV	S-MART	transcript	19491	21311	.	-	.	seqedit=false;p_id=P6494;gene_id=YOL158C;tss_id=TSS1582;nbOverlaps=0;ID=YOL158C;Name=ENB1
IV	S-MART	transcript	1202843	1204210	.	-	.	seqedit=false;p_id=P1710;gene_id=YDR364C;tss_id=TSS5012;nbOverlaps=0;ID=YDR364C;Name=CDC40
IV	S-MART	transcript	1204497	1206383	.	-	.	seqedit=false;p_id=P3211;gene_id=YDR365C;tss_id=TSS6201;nbOverlaps=0;ID=YDR365C;Name=ESF1
VII	S-MART	transcript	922633	924462	.	-	.	seqedit=false;p_id=P2400;gene_id=YGR216C;tss_id=TSS6109;nbOverlaps=0;ID=YGR216C;Name=GPI1
IV	S-MART	transcript	1206997	1208319	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_00;p_id=P1525;gene_id=YDR365W-A;tss_id=TSS3962;nbOverlaps=33;ID=YDR365W-A;Name=YDR365W-A
IV	S-MART	transcript	1206997	1212265	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:119:8597:11002#0--HWUSI-EAS1656_00;p_id=P71;gene_id=YDR365W-B;tss_id=TSS3962;nbOverlaps=41;ID=YDR365W-B;Name=YDR365W-B
IV	S-MART	exon	1206997	1208301	.	+	.	ID=YDR365W-B-exon1;Name=YDR365W-B-exon1;Parent=YDR365W-B
IV	S-MART	exon	1208303	1212265	.	+	.	ID=YDR365W-B-exon2;Name=YDR365W-B-exon2;Parent=YDR365W-B
XVI	S-MART	transcript	883239	883457	.	+	.	seqedit=false;p_id=P5531;gene_id=YPR169W-A;tss_id=TSS6188;nbOverlaps=0;ID=YPR169W-A;Name=YPR169W-A
XIII	S-MART	transcript	549736	550044	.	-	.	seqedit=false;p_id=P5039;gene_id=YMR141C;tss_id=TSS3828;nbOverlaps=0;ID=YMR141C;Name=YMR141C
IV	S-MART	transcript	1212848	1213614	.	+	.	seqedit=false;p_id=P4370;gene_id=YDR367W;tss_id=TSS4640;nbOverlaps=0;ID=YDR367W;Name=KEI1
IV	S-MART	exon	1212848	1212877	.	+	.	ID=YDR367W-exon1;Name=KEI1-exon1;Parent=YDR367W
IV	S-MART	exon	1212979	1213614	.	+	.	ID=YDR367W-exon2;Name=KEI1-exon2;Parent=YDR367W
IV	S-MART	transcript	1212438	1212836	.	-	.	seqedit=false;p_id=P5115;gene_id=YDR366C;tss_id=TSS441;nbOverlaps=0;ID=YDR366C;Name=YDR366C
VII	S-MART	transcript	924696	930815	.	+	.	seqedit=false;p_id=P4283;gene_id=YGR217W;tss_id=TSS1501;nbOverlaps=0;ID=YGR217W;Name=CCH1
IV	S-MART	transcript	1213904	1214842	.	+	.	seqedit=false;p_id=P1477;gene_id=YDR368W;tss_id=TSS1401;nbOverlaps=0;ID=YDR368W;Name=YPR1
IV	S-MART	transcript	1215016	1217580	.	-	.	seqedit=false;p_id=P4173;gene_id=YDR369C;tss_id=TSS2772;nbOverlaps=0;ID=YDR369C;Name=XRS2
XI	S-MART	transcript	163642	164385	.	-	.	seqedit=false;p_id=P2215;gene_id=YKL152C;tss_id=TSS5913;nbOverlaps=0;ID=YKL152C;Name=GPM1
IV	S-MART	transcript	1219509	1219613	.	-	.	seqedit=false;p_id=P3329;gene_id=YDR371C-A;tss_id=TSS3233;nbOverlaps=0;ID=YDR371C-A;Name=YDR371C-A
IV	S-MART	transcript	1217782	1219110	.	-	.	seqedit=false;p_id=P2929;gene_id=YDR370C;tss_id=TSS3093;nbOverlaps=0;ID=YDR370C;Name=YDR370C
XI	S-MART	transcript	403580	403879	.	-	.	seqedit=false;p_id=P756;gene_id=YKL018C-A;tss_id=TSS6750;nbOverlaps=0;ID=YKL018C-A;Name=YKL018C-A
IV	S-MART	transcript	1219413	1220948	.	+	.	seqedit=false;p_id=P1434;gene_id=YDR371W;tss_id=TSS5192;nbOverlaps=0;ID=YDR371W;Name=CTS2
IV	S-MART	transcript	1221112	1222149	.	-	.	seqedit=false;p_id=P1790;gene_id=YDR372C;tss_id=TSS1975;nbOverlaps=0;ID=YDR372C;Name=VPS74
IV	S-MART	transcript	1222759	1223331	.	+	.	seqedit=false;p_id=P1189;gene_id=YDR373W;tss_id=TSS679;nbOverlaps=0;ID=YDR373W;Name=FRQ1
IV	S-MART	transcript	1224757	1225026	.	+	.	seqedit=false;p_id=P6207;gene_id=YDR374W-A;tss_id=TSS2464;nbOverlaps=0;ID=YDR374W-A;Name=YDR374W-A
XI	S-MART	transcript	164917	165930	.	-	.	seqedit=false;p_id=P4296;gene_id=YKL151C;tss_id=TSS6621;nbOverlaps=0;ID=YKL151C;Name=YKL151C
IV	S-MART	transcript	1223474	1224394	.	-	.	seqedit=false;p_id=P447;gene_id=YDR374C;tss_id=TSS2892;nbOverlaps=0;ID=YDR374C;Name=YDR374C
IV	S-MART	transcript	1225166	1226536	.	-	.	seqedit=false;p_id=P6536;gene_id=YDR375C;tss_id=TSS5460;nbOverlaps=0;ID=YDR375C;Name=BCS1
XI	S-MART	transcript	404102	405091	.	+	.	seqedit=false;p_id=P3602;gene_id=YKL018W;tss_id=TSS4694;nbOverlaps=0;ID=YKL018W;Name=SWD2
IV	S-MART	transcript	1226822	1228303	.	+	.	seqedit=false;p_id=P6122;gene_id=YDR376W;tss_id=TSS6125;nbOverlaps=0;ID=YDR376W;Name=ARH1
IV	S-MART	transcript	1228611	1228916	.	+	.	seqedit=false;p_id=P2481;gene_id=YDR377W;tss_id=TSS1461;nbOverlaps=0;ID=YDR377W;Name=ATP17
IV	S-MART	transcript	1229349	1229609	.	-	.	seqedit=false;p_id=P70;gene_id=YDR378C;tss_id=TSS4933;nbOverlaps=0;ID=YDR378C;Name=LSM6
IV	S-MART	transcript	1233278	1233517	.	-	.	seqedit=false;p_id=P3012;gene_id=YDR379C-A;tss_id=TSS2644;nbOverlaps=0;ID=YDR379C-A;Name=YDR379C-A
VIII	S-MART	transcript	811	1293	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:70:17687:13930#0--HWUSI-EAS1656_0009;p_id=P2164;gene_id=YHL050W-A;tss_id=TSS586;nbOverlaps=67;ID=YHL050W-A;Name=YHL050W-A
IV	S-MART	transcript	1230167	1233196	.	+	.	seqedit=false;p_id=P4812;gene_id=YDR379W;tss_id=TSS2573;nbOverlaps=0;ID=YDR379W;Name=RGA2
XVI	S-MART	transcript	624469	626967	.	-	.	seqedit=false;p_id=P925;gene_id=YPR029C;tss_id=TSS1660;nbOverlaps=0;ID=YPR029C;Name=APL4
IV	S-MART	transcript	1234218	1236125	.	+	.	seqedit=false;p_id=P6581;gene_id=YDR380W;tss_id=TSS4402;nbOverlaps=0;ID=YDR380W;Name=ARO10
VII	S-MART	transcript	936035	936376	.	+	.	seqedit=false;p_id=P5286;gene_id=YGR219W;tss_id=TSS2959;nbOverlaps=0;ID=YGR219W;Name=YGR219W
IV	S-MART	transcript	1238312	1238850	.	-	.	seqedit=false;p_id=P5053;gene_id=YDR381C-A;tss_id=TSS6950;nbOverlaps=0;ID=YDR381C-A;Name=YDR381C-A
IV	S-MART	exon	1238312	1238630	.	-	.	ID=YDR381C-A-exon1;Name=YDR381C-A-exon1;Parent=YDR381C-A
IV	S-MART	exon	1238825	1238850	.	-	.	ID=YDR381C-A-exon2;Name=YDR381C-A-exon2;Parent=YDR381C-A
XV	S-MART	transcript	783677	784588	.	+	.	seqedit=false;p_id=P3862;gene_id=YOR238W;tss_id=TSS4232;nbOverlaps=0;ID=YOR238W;Name=YOR238W
XIII	S-MART	transcript	551928	552903	.	+	.	seqedit=false;p_id=P3877;gene_id=YMR143W;tss_id=TSS1490;nbOverlaps=0;ID=YMR143W;Name=RPS16A
XIII	S-MART	exon	551928	551951	.	+	.	ID=YMR143W-exon1;Name=RPS16A-exon1;Parent=YMR143W
XIII	S-MART	exon	552496	552903	.	+	.	ID=YMR143W-exon2;Name=RPS16A-exon2;Parent=YMR143W
XV	S-MART	transcript	986899	988782	.	-	.	seqedit=false;p_id=P3553;gene_id=YOR348C;tss_id=TSS562;nbOverlaps=0;ID=YOR348C;Name=PUT4
XV	S-MART	transcript	989789	992833	.	+	.	seqedit=false;p_id=P5514;gene_id=YOR349W;tss_id=TSS4446;nbOverlaps=0;ID=YOR349W;Name=CIN1
VII	S-MART	transcript	937124	938992	.	-	.	seqedit=false;p_id=P1751;gene_id=YGR221C;tss_id=TSS4160;nbOverlaps=0;ID=YGR221C;Name=TOS2
XV	S-MART	transcript	786995	788641	.	+	.	seqedit=false;p_id=P6187;gene_id=YOR241W;tss_id=TSS2751;nbOverlaps=0;ID=YOR241W;Name=MET7
XV	S-MART	transcript	788742	789857	.	-	.	seqedit=false;p_id=P2630;gene_id=YOR242C;tss_id=TSS1046;nbOverlaps=0;ID=YOR242C;Name=SSP2
I	S-MART	transcript	94687	95472	.	+	.	seqedit=false;p_id=P449;gene_id=YAL027W;tss_id=TSS2357;nbOverlaps=0;ID=YAL027W;Name=SAW1
XV	S-MART	transcript	790211	792241	.	-	.	seqedit=false;p_id=P5288;gene_id=YOR243C;tss_id=TSS6223;nbOverlaps=0;ID=YOR243C;Name=PUS7
XV	S-MART	transcript	792531	793868	.	+	.	seqedit=false;p_id=P2045;gene_id=YOR244W;tss_id=TSS5181;nbOverlaps=0;ID=YOR244W;Name=ESA1
XI	S-MART	transcript	159456	161342	.	-	.	seqedit=false;p_id=P3790;gene_id=YKL155C;tss_id=TSS3593;nbOverlaps=0;ID=YKL155C;Name=RSM22
XV	S-MART	transcript	794076	795332	.	-	.	seqedit=false;p_id=P4905;gene_id=YOR245C;tss_id=TSS2054;nbOverlaps=0;ID=YOR245C;Name=DGA1
XV	S-MART	transcript	795801	796793	.	-	.	seqedit=false;p_id=P1607;gene_id=YOR246C;tss_id=TSS4110;nbOverlaps=0;ID=YOR246C;Name=ENV9
VII	S-MART	transcript	939923	940804	.	+	.	seqedit=false;p_id=P658;gene_id=YGR222W;tss_id=TSS1698;nbOverlaps=0;ID=YGR222W;Name=PET54
XV	S-MART	transcript	797676	798308	.	+	.	seqedit=false;p_id=P6016;gene_id=YOR247W;tss_id=TSS3220;nbOverlaps=0;ID=YOR247W;Name=SRL1
XVI	S-MART	transcript	900755	901558	.	+	.	seqedit=false;p_id=P1575;gene_id=YPR183W;tss_id=TSS2260;nbOverlaps=0;ID=YPR183W;Name=DPM1
XV	S-MART	transcript	798674	800731	.	-	.	seqedit=false;p_id=P2460;gene_id=YOR249C;tss_id=TSS4026;nbOverlaps=0;ID=YOR249C;Name=APC5
XV	S-MART	transcript	798013	798315	.	+	.	seqedit=false;p_id=P4616;gene_id=YOR248W;tss_id=TSS1118;nbOverlaps=0;ID=YOR248W;Name=YOR248W
XV	S-MART	transcript	800970	802307	.	-	.	seqedit=false;p_id=P2006;gene_id=YOR250C;tss_id=TSS4980;nbOverlaps=0;ID=YOR250C;Name=CLP1
XV	S-MART	transcript	802550	803464	.	-	.	seqedit=false;p_id=P5771;gene_id=YOR251C;tss_id=TSS325;nbOverlaps=0;ID=YOR251C;Name=TUM1
XV	S-MART	transcript	803667	804203	.	+	.	seqedit=false;p_id=P5089;gene_id=YOR252W;tss_id=TSS3629;nbOverlaps=0;ID=YOR252W;Name=TMA16
VII	S-MART	transcript	940869	942215	.	-	.	seqedit=false;p_id=P292;gene_id=YGR223C;tss_id=TSS788;nbOverlaps=0;ID=YGR223C;Name=HSV2
XV	S-MART	transcript	804377	804907	.	+	.	seqedit=false;p_id=P3176;gene_id=YOR253W;tss_id=TSS3480;nbOverlaps=0;ID=YOR253W;Name=NAT5
XV	S-MART	transcript	805032	807023	.	-	.	seqedit=false;p_id=P6213;gene_id=YOR254C;tss_id=TSS434;nbOverlaps=0;ID=YOR254C;Name=SEC63
XV	S-MART	transcript	807271	808107	.	+	.	seqedit=false;p_id=P1087;gene_id=YOR255W;tss_id=TSS6641;nbOverlaps=0;ID=YOR255W;Name=OSW1
XV	S-MART	transcript	808254	810683	.	-	.	seqedit=false;p_id=P991;gene_id=YOR256C;tss_id=TSS6437;nbOverlaps=0;ID=YOR256C;Name=TRE2
XI	S-MART	transcript	158613	159212	.	+	.	seqedit=false;p_id=P6111;gene_id=YKL156W;tss_id=TSS912;nbOverlaps=0;ID=YKL156W;Name=RPS27A
XI	S-MART	exon	158613	158615	.	+	.	ID=YKL156W-exon1;Name=RPS27A-exon1;Parent=YKL156W
XI	S-MART	exon	158967	159212	.	+	.	ID=YKL156W-exon2;Name=RPS27A-exon2;Parent=YKL156W
XV	S-MART	transcript	811008	811493	.	+	.	seqedit=false;p_id=P5519;gene_id=YOR257W;tss_id=TSS5692;nbOverlaps=0;ID=YOR257W;Name=CDC31
XV	S-MART	transcript	811671	812324	.	+	.	seqedit=false;p_id=P4221;gene_id=YOR258W;tss_id=TSS6611;nbOverlaps=0;ID=YOR258W;Name=HNT3
VII	S-MART	transcript	942806	944647	.	+	.	seqedit=false;p_id=P3700;gene_id=YGR224W;tss_id=TSS3925;nbOverlaps=0;ID=YGR224W;Name=AZR1
XV	S-MART	transcript	812395	813708	.	-	.	seqedit=false;p_id=P985;gene_id=YOR259C;tss_id=TSS5215;nbOverlaps=0;ID=YOR259C;Name=RPT4
II	S-MART	transcript	318266	320275	.	+	.	seqedit=false;p_id=P3821;gene_id=YBR041W;tss_id=TSS54;nbOverlaps=0;ID=YBR041W;Name=FAT1
XV	S-MART	transcript	813984	815720	.	+	.	seqedit=false;p_id=P5942;gene_id=YOR260W;tss_id=TSS574;nbOverlaps=0;ID=YOR260W;Name=GCD1
XV	S-MART	transcript	815915	816931	.	-	.	seqedit=false;p_id=P5607;gene_id=YOR261C;tss_id=TSS2433;nbOverlaps=0;ID=YOR261C;Name=RPN8
XV	S-MART	transcript	818866	820158	.	+	.	seqedit=false;p_id=P3991;gene_id=YOR264W;tss_id=TSS4396;nbOverlaps=0;ID=YOR264W;Name=DSE3
XIII	S-MART	transcript	553362	554390	.	+	.	seqedit=false;p_id=P2118;gene_id=YMR144W;tss_id=TSS302;nbOverlaps=0;ID=YMR144W;Name=YMR144W
XV	S-MART	transcript	817292	818335	.	+	.	seqedit=false;p_id=P933;gene_id=YOR262W;tss_id=TSS449;nbOverlaps=0;ID=YOR262W;Name=YOR262W
XV	S-MART	transcript	818757	819164	.	-	.	seqedit=false;p_id=P4596;gene_id=YOR263C;tss_id=TSS4142;nbOverlaps=0;ID=YOR263C;Name=YOR263C
VII	S-MART	transcript	945145	947019	.	+	.	seqedit=false;p_id=P5719;gene_id=YGR225W;tss_id=TSS6805;nbOverlaps=0;ID=YGR225W;Name=AMA1
VII	S-MART	exon	945145	946327	.	+	.	ID=YGR225W-exon1;Name=AMA1-exon1;Parent=YGR225W
VII	S-MART	exon	946421	947019	.	+	.	ID=YGR225W-exon2;Name=AMA1-exon2;Parent=YGR225W
XV	S-MART	transcript	820454	820774	.	+	.	seqedit=false;p_id=P6443;gene_id=YOR265W;tss_id=TSS3682;nbOverlaps=0;ID=YOR265W;Name=RBL2
XV	S-MART	transcript	821023	822294	.	+	.	seqedit=false;p_id=P3035;gene_id=YOR266W;tss_id=TSS2392;nbOverlaps=0;ID=YOR266W;Name=PNT1
XV	S-MART	transcript	822588	824867	.	-	.	seqedit=false;p_id=P6138;gene_id=YOR267C;tss_id=TSS6663;nbOverlaps=0;ID=YOR267C;Name=HRK1
XV	S-MART	transcript	826385	827869	.	+	.	seqedit=false;p_id=P1596;gene_id=YOR269W;tss_id=TSS3914;nbOverlaps=0;ID=YOR269W;Name=PAC1
XIII	S-MART	transcript	557481	558524	.	-	.	seqedit=false;p_id=P2981;gene_id=YMR146C;tss_id=TSS6210;nbOverlaps=0;ID=YMR146C;Name=TIF34
XV	S-MART	transcript	825534	825932	.	-	.	seqedit=false;p_id=P4507;gene_id=YOR268C;tss_id=TSS3307;nbOverlaps=0;ID=YOR268C;Name=YOR268C
XV	S-MART	transcript	828052	830574	.	-	.	seqedit=false;p_id=P192;gene_id=YOR270C;tss_id=TSS3268;nbOverlaps=0;ID=YOR270C;Name=VPH1
XV	S-MART	transcript	831059	832042	.	-	.	seqedit=false;p_id=P3307;gene_id=YOR271C;tss_id=TSS5187;nbOverlaps=0;ID=YOR271C;Name=FSF1
XV	S-MART	transcript	832813	834195	.	+	.	seqedit=false;p_id=P6192;gene_id=YOR272W;tss_id=TSS1820;nbOverlaps=0;ID=YOR272W;Name=YTM1
XV	S-MART	transcript	834452	836431	.	-	.	seqedit=false;p_id=P5546;gene_id=YOR273C;tss_id=TSS2249;nbOverlaps=0;ID=YOR273C;Name=TPO4
XV	S-MART	transcript	837674	838960	.	+	.	seqedit=false;p_id=P5896;gene_id=YOR274W;tss_id=TSS1683;nbOverlaps=0;ID=YOR274W;Name=MOD5
XIII	S-MART	transcript	560366	560812	.	+	.	seqedit=false;p_id=P2021;gene_id=YMR148W;tss_id=TSS6419;nbOverlaps=0;ID=YMR148W;Name=OSW5
XV	S-MART	transcript	839084	841069	.	-	.	seqedit=false;p_id=P4582;gene_id=YOR275C;tss_id=TSS127;nbOverlaps=0;ID=YOR275C;Name=RIM20
XV	S-MART	transcript	841333	841818	.	+	.	seqedit=false;p_id=P6042;gene_id=YOR276W;tss_id=TSS3377;nbOverlaps=0;ID=YOR276W;Name=CAF20
XV	S-MART	transcript	842817	843644	.	+	.	seqedit=false;p_id=P5839;gene_id=YOR278W;tss_id=TSS5418;nbOverlaps=0;ID=YOR278W;Name=HEM4
XV	S-MART	transcript	841515	841823	.	-	.	seqedit=false;p_id=P5893;gene_id=YOR277C;tss_id=TSS5585;nbOverlaps=0;ID=YOR277C;Name=YOR277C
XV	S-MART	transcript	843698	844630	.	-	.	seqedit=false;p_id=P5830;gene_id=YOR279C;tss_id=TSS6940;nbOverlaps=0;ID=YOR279C;Name=RFM1
XV	S-MART	transcript	844992	845792	.	-	.	seqedit=false;p_id=P1074;gene_id=YOR280C;tss_id=TSS960;nbOverlaps=0;ID=YOR280C;Name=FSH3
XV	S-MART	transcript	846269	847129	.	-	.	seqedit=false;p_id=P6086;gene_id=YOR281C;tss_id=TSS4838;nbOverlaps=0;ID=YOR281C;Name=PLP2
XV	S-MART	transcript	848478	849209	.	+	.	seqedit=false;p_id=P598;gene_id=YOR284W;tss_id=TSS182;nbOverlaps=0;ID=YOR284W;Name=HUA2
VII	S-MART	transcript	947420	948997	.	+	.	seqedit=false;p_id=P1811;gene_id=YGR227W;tss_id=TSS2201;nbOverlaps=0;ID=YGR227W;Name=DIE2
XV	S-MART	transcript	847000	847320	.	+	.	seqedit=false;p_id=P6222;gene_id=YOR282W;tss_id=TSS3184;nbOverlaps=0;ID=YOR282W;Name=YOR282W
XV	S-MART	transcript	847453	848145	.	+	.	seqedit=false;p_id=P4756;gene_id=YOR283W;tss_id=TSS1554;nbOverlaps=0;ID=YOR283W;Name=YOR283W
XV	S-MART	transcript	849635	850054	.	+	.	seqedit=false;p_id=P4170;gene_id=YOR285W;tss_id=TSS5974;nbOverlaps=0;ID=YOR285W;Name=RDL1
XV	S-MART	transcript	850280	850729	.	+	.	seqedit=false;p_id=P6593;gene_id=YOR286W;tss_id=TSS5474;nbOverlaps=0;ID=YOR286W;Name=RDL2
VIII	S-MART	transcript	108812	109885	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:1998:9488#0--HWUSI-EAS1656_0009_FC:3:84:18485:6654#0--HWUSI-EAS1656_0009_;p_id=P883;gene_id=YHR002W;tss_id=TSS245;nbOverlaps=63;ID=YHR002W;Name=LEU5
XV	S-MART	transcript	850937	851839	.	-	.	seqedit=false;p_id=P1492;gene_id=YOR287C;tss_id=TSS3281;nbOverlaps=0;ID=YOR287C;Name=RRP36
XV	S-MART	transcript	852121	853077	.	-	.	seqedit=false;p_id=P3420;gene_id=YOR288C;tss_id=TSS2428;nbOverlaps=0;ID=YOR288C;Name=MPD1
VII	S-MART	transcript	946792	947001	.	-	.	seqedit=false;p_id=P2625;gene_id=YGR226C;tss_id=TSS966;nbOverlaps=0;ID=YGR226C;Name=YGR226C
XV	S-MART	transcript	855147	860258	.	-	.	seqedit=false;p_id=P955;gene_id=YOR290C;tss_id=TSS3668;nbOverlaps=0;ID=YOR290C;Name=SNF2
II	S-MART	transcript	320416	321609	.	-	.	seqedit=false;p_id=P2594;gene_id=YBR042C;tss_id=TSS1639;nbOverlaps=0;ID=YBR042C;Name=CST26
XV	S-MART	transcript	853357	854112	.	+	.	seqedit=false;p_id=P1040;gene_id=YOR289W;tss_id=TSS3271;nbOverlaps=0;ID=YOR289W;Name=YOR289W
XV	S-MART	transcript	861175	865593	.	+	.	seqedit=false;p_id=P3394;gene_id=YOR291W;tss_id=TSS2131;nbOverlaps=0;ID=YOR291W;Name=YPK9
XV	S-MART	transcript	867998	868147	.	-	.	seqedit=false;p_id=P2079;gene_id=YOR293C-A;tss_id=TSS4832;nbOverlaps=0;ID=YOR293C-A;Name=YOR293C-A
XI	S-MART	transcript	153816	154451	.	-	.	seqedit=false;p_id=P6190;gene_id=YKL159C;tss_id=TSS3633;nbOverlaps=0;ID=YKL159C;Name=RCN1
XIII	S-MART	transcript	352280	352370	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)M;tss_id=TSS894;nbOverlaps=171;ID=tF(GAA)M;Name=tF(GAA)M
XIII	S-MART	exon	352280	352316	.	+	.	ID=tF(GAA)M-exon1;Name=tF(GAA)M-exon1;Parent=tF(GAA)M
XIII	S-MART	exon	352335	352370	.	+	.	ID=tF(GAA)M-exon2;Name=tF(GAA)M-exon2;Parent=tF(GAA)M
XV	S-MART	transcript	865653	866582	.	-	.	seqedit=false;p_id=P435;gene_id=YOR292C;tss_id=TSS2982;nbOverlaps=0;ID=YOR292C;Name=YOR292C
XV	S-MART	transcript	867098	867852	.	+	.	seqedit=false;p_id=P3997;gene_id=YOR293W;tss_id=TSS6706;nbOverlaps=0;ID=YOR293W;Name=RPS10A
XV	S-MART	exon	867098	867149	.	+	.	ID=YOR293W-exon1;Name=RPS10A-exon1;Parent=YOR293W
XV	S-MART	exon	867587	867852	.	+	.	ID=YOR293W-exon2;Name=RPS10A-exon2;Parent=YOR293W
VII	S-MART	transcript	949382	950899	.	-	.	seqedit=false;p_id=P5851;gene_id=YGR229C;tss_id=TSS745;nbOverlaps=0;ID=YGR229C;Name=SMI1
XVI	S-MART	transcript	548486	550306	.	+	.	seqedit=false;p_id=P2243;gene_id=YPL005W;tss_id=TSS3566;nbOverlaps=0;ID=YPL005W;Name=AEP3
XVI	S-MART	transcript	544631	548143	.	+	.	seqedit=false;p_id=P3422;gene_id=YPL006W;tss_id=TSS6388;nbOverlaps=0;ID=YPL006W;Name=NCR1
XV	S-MART	transcript	868340	868951	.	+	.	seqedit=false;p_id=P4297;gene_id=YOR294W;tss_id=TSS6084;nbOverlaps=0;ID=YOR294W;Name=RRS1
XV	S-MART	transcript	869208	869894	.	+	.	seqedit=false;p_id=P4071;gene_id=YOR295W;tss_id=TSS2180;nbOverlaps=0;ID=YOR295W;Name=UAF30
XIII	S-MART	transcript	562506	562943	.	+	.	seqedit=false;p_id=P3947;gene_id=YMR151W;tss_id=TSS1988;nbOverlaps=0;ID=YMR151W;Name=YIM2
III	S-MART	transcript	143634	144506	.	+	.	seqedit=false;p_id=P5957;gene_id=YCR016W;tss_id=TSS5851;nbOverlaps=0;ID=YCR016W;Name=YCR016W
XV	S-MART	transcript	981828	984785	.	+	.	seqedit=false;p_id=P452;gene_id=YOR346W;tss_id=TSS2017;nbOverlaps=0;ID=YOR346W;Name=REV1
XV	S-MART	transcript	870202	874071	.	+	.	seqedit=false;p_id=P3703;gene_id=YOR296W;tss_id=TSS4744;nbOverlaps=0;ID=YOR296W;Name=YOR296W
VII	S-MART	transcript	949365	949709	.	+	.	seqedit=false;p_id=P1151;gene_id=YGR228W;tss_id=TSS763;nbOverlaps=0;ID=YGR228W;Name=YGR228W
XIII	S-MART	transcript	563096	564193	.	+	.	seqedit=false;p_id=P6656;gene_id=YMR152W;tss_id=TSS5003;nbOverlaps=0;ID=YMR152W;Name=YIM1
VII	S-MART	transcript	951894	952307	.	+	.	seqedit=false;p_id=P3303;gene_id=YGR230W;tss_id=TSS5754;nbOverlaps=0;ID=YGR230W;Name=BNS1
V	S-MART	transcript	484788	487193	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:75:14525:21394#0--HWUSI-EAS1656_0009_FC:3:30:11807:2880#0--HWUSI-EAS1656_000;p_id=P6481;gene_id=YER157W;tss_id=TSS5195;nbOverlaps=332;ID=YER157W;Name=COG3
XIII	S-MART	transcript	565574	565909	.	-	.	seqedit=false;p_id=P2502;gene_id=YMR153C-A;tss_id=TSS4681;nbOverlaps=0;ID=YMR153C-A;Name=YMR153C-A
VII	S-MART	transcript	952548	953480	.	-	.	seqedit=false;p_id=P1865;gene_id=YGR231C;tss_id=TSS3721;nbOverlaps=0;ID=YGR231C;Name=PHB2
V	S-MART	transcript	483325	484341	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:15:3023:21196#0--HWUSI-EAS1656_0009_FC:3:20:3255:19473#0--HWUSI-EAS1656_0009;p_id=P2170;gene_id=YER156C;tss_id=TSS6021;nbOverlaps=989;ID=YER156C;Name=YER156C
XIII	S-MART	transcript	564435	565862	.	+	.	seqedit=false;p_id=P2313;gene_id=YMR153W;tss_id=TSS6104;nbOverlaps=0;ID=YMR153W;Name=NUP53
VIII	S-MART	transcript	161730	164711	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:14387:4522#0--HWUSI-EAS1656_0009_FC:3:27:7843:10590#0--HWUSI-EAS1656_0009;p_id=P3330;gene_id=YHR027C;tss_id=TSS2044;nbOverlaps=2206;ID=YHR027C;Name=RPN1
XI	S-MART	transcript	382072	382485	.	+	.	seqedit=false;p_id=P1512;gene_id=YKL031W;tss_id=TSS5701;nbOverlaps=0;ID=YKL031W;Name=YKL031W
II	S-MART	transcript	347603	347686	.	+	.	seqedit=false;gene_id=tL(UAA)B2;tss_id=TSS432;nbOverlaps=0;ID=tL(UAA)B2;Name=tL(UAA)B2
XIII	S-MART	transcript	923494	923802	.	-	.	seqedit=false;p_id=P3248;gene_id=YMR326C;tss_id=TSS5403;nbOverlaps=0;ID=YMR326C;Name=YMR326C
VIII	S-MART	transcript	120091	121683	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:79:1472:11319#0--HWUSI-EAS1656_0009_FC:3:97:13916:20433#0--HWUSI-EAS1656_000;p_id=P526;gene_id=YHR007C;tss_id=TSS4001;nbOverlaps=5687;ID=YHR007C;Name=ERG11
VII	S-MART	transcript	954674	958210	.	-	.	seqedit=false;p_id=P2247;gene_id=YGR233C;tss_id=TSS3087;nbOverlaps=0;ID=YGR233C;Name=PHO81
XI	S-MART	transcript	135790	136023	.	-	.	seqedit=false;p_id=P2931;gene_id=YKL165C-A;tss_id=TSS917;nbOverlaps=0;ID=YKL165C-A;Name=YKL165C-A
V	S-MART	transcript	488857	490578	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:12731:5700#0--HWUSI-EAS1656_0009_FC:3:48:14803:12776#0--HWUSI-EAS1656_000;p_id=P1709;gene_id=YER158C;tss_id=TSS5066;nbOverlaps=33;ID=YER158C;Name=YER158C
XI	S-MART	transcript	141794	142819	.	-	.	seqedit=false;p_id=P4068;gene_id=YKL164C;tss_id=TSS2079;nbOverlaps=0;ID=YKL164C;Name=PIR1
III	S-MART	transcript	148238	148903	.	-	.	seqedit=false;p_id=P1135;gene_id=YCR018C;tss_id=TSS3615;nbOverlaps=0;ID=YCR018C;Name=SRD1
XI	S-MART	transcript	374505	375215	.	+	.	seqedit=false;p_id=P4070;gene_id=YKL033W-A;tss_id=TSS6418;nbOverlaps=0;ID=YKL033W-A;Name=YKL033W-A
V	S-MART	transcript	491530	491958	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:58:6714:8471#0--HWUSI-EAS1656_0009_FC:3:106:10839:11424#0--HWUSI-EAS1656_000;p_id=P2299;gene_id=YER159C;tss_id=TSS5558;nbOverlaps=29;ID=YER159C;Name=BUR6
XI	S-MART	transcript	137932	140691	.	-	.	seqedit=false;p_id=P6465;gene_id=YKL165C;tss_id=TSS4370;nbOverlaps=0;ID=YKL165C;Name=MCD4
VII	S-MART	transcript	961360	962061	.	-	.	seqedit=false;p_id=P443;gene_id=YGR235C;tss_id=TSS5334;nbOverlaps=0;ID=YGR235C;Name=MOS2
V	S-MART	transcript	496802	498124	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P4770;gene_id=YER159C-A;tss_id=TSS5267;nbOverlaps=12;ID=YER159C-A;Name=YER159C-A
XIII	S-MART	transcript	571277	572044	.	-	.	seqedit=false;p_id=P5898;gene_id=YMR157C;tss_id=TSS6973;nbOverlaps=0;ID=YMR157C;Name=AIM36
VII	S-MART	transcript	962530	962817	.	-	.	seqedit=false;p_id=P450;gene_id=YGR236C;tss_id=TSS4448;nbOverlaps=0;ID=YGR236C;Name=SPG1
VIII	S-MART	transcript	126521	127492	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:99:10814:5299#0--HWUSI-EAS1656_0009_FC:3:68:1812:16634#0--HWUSI-EAS1656_0009;p_id=P4307;gene_id=YHR010W;tss_id=TSS3979;nbOverlaps=2517;ID=YHR010W;Name=RPL27A
VIII	S-MART	exon	126521	126551	.	+	.	ID=YHR010W-exon1;Name=RPL27A-exon1;Parent=YHR010W
VIII	S-MART	exon	127113	127492	.	+	.	ID=YHR010W-exon2;Name=RPL27A-exon2;Parent=YHR010W
VIII	S-MART	transcript	164978	167434	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:23:10890:14983#0--HWUSI-EAS1656_0009_FC:3:6:17710:3473#0--HWUSI-EAS1656_0009;p_id=P5252;gene_id=YHR028C;tss_id=TSS6510;nbOverlaps=753;ID=YHR028C;Name=DAP2
VII	S-MART	transcript	966039	968687	.	-	.	seqedit=false;p_id=P4913;gene_id=YGR238C;tss_id=TSS423;nbOverlaps=0;ID=YGR238C;Name=KEL2
XIII	S-MART	transcript	572248	572715	.	+	.	seqedit=false;p_id=P4821;gene_id=YMR158W;tss_id=TSS1184;nbOverlaps=0;ID=YMR158W;Name=MRPS8
VII	S-MART	transcript	963298	965655	.	-	.	seqedit=false;p_id=P5900;gene_id=YGR237C;tss_id=TSS6569;nbOverlaps=0;ID=YGR237C;Name=YGR237C
XI	S-MART	transcript	134509	135705	.	-	.	seqedit=false;p_id=P5447;gene_id=YKL166C;tss_id=TSS5344;nbOverlaps=0;ID=YKL166C;Name=TPK3
XI	S-MART	transcript	131288	133462	.	-	.	seqedit=false;p_id=P2183;gene_id=YKL168C;tss_id=TSS6984;nbOverlaps=0;ID=YKL168C;Name=KKQ8
III	S-MART	transcript	151608	151862	.	-	.	seqedit=false;p_id=P2536;gene_id=YCR018C-A;tss_id=TSS5259;nbOverlaps=0;ID=YCR018C-A;Name=YCR018C-A
XI	S-MART	transcript	365605	369117	.	+	.	seqedit=false;p_id=P4211;gene_id=YKL038W;tss_id=TSS294;nbOverlaps=0;ID=YKL038W;Name=RGT1
XIII	S-MART	transcript	574476	574928	.	-	.	seqedit=false;p_id=P2936;gene_id=YMR159C;tss_id=TSS602;nbOverlaps=0;ID=YMR159C;Name=ATG16
XI	S-MART	transcript	362622	364193	.	+	.	seqedit=false;p_id=P491;gene_id=YKL039W;tss_id=TSS335;nbOverlaps=0;ID=YKL039W;Name=PTM1
V	S-MART	transcript	500630	502894	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:19:14646:7402#0--HWUSI-EAS1656_0009_FC:3:102:5127:11878#0--HWUSI-EAS1656_000;p_id=P6471;gene_id=YER162C;tss_id=TSS3609;nbOverlaps=23;ID=YER162C;Name=RAD4
XIII	S-MART	transcript	577718	578392	.	+	.	seqedit=false;p_id=P684;gene_id=YMR161W;tss_id=TSS5746;nbOverlaps=0;ID=YMR161W;Name=HLJ1
XI	S-MART	transcript	361058	361828	.	-	.	seqedit=false;p_id=P2412;gene_id=YKL040C;tss_id=TSS2370;nbOverlaps=0;ID=YKL040C;Name=NFU1
V	S-MART	transcript	505392	509798	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:12763:6787#0--HWUSI-EAS1656_0009_FC:3:52:12213:1701#0--HWUSI-EAS1656_0009_;p_id=P5569;gene_id=YER164W;tss_id=TSS6836;nbOverlaps=268;ID=YER164W;Name=CHD1
XI	S-MART	transcript	127475	130261	.	+	.	seqedit=false;p_id=P5397;gene_id=YKL171W;tss_id=TSS5517;nbOverlaps=0;ID=YKL171W;Name=NNK1
XI	S-MART	transcript	360143	360817	.	+	.	seqedit=false;p_id=P4728;gene_id=YKL041W;tss_id=TSS4220;nbOverlaps=0;ID=YKL041W;Name=VPS24
V	S-MART	transcript	503084	503782	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:87:2513:10514#0--HWUSI-EAS1656_0009_FC:3:7:17841:17232#0--HWUSI-EAS1656_0009;p_id=P6436;gene_id=YER163C;tss_id=TSS266;nbOverlaps=171;ID=YER163C;Name=YER163C
XI	S-MART	transcript	125759	127042	.	+	.	seqedit=false;p_id=P1928;gene_id=YKL172W;tss_id=TSS3910;nbOverlaps=0;ID=YKL172W;Name=EBP2
XIV	S-MART	transcript	374869	374959	.	+	.	seqedit=false;gene_id=tF(GAA)N;tss_id=TSS2252;nbOverlaps=0;ID=tF(GAA)N;Name=tF(GAA)N
XIV	S-MART	exon	374869	374905	.	+	.	ID=tF(GAA)N-exon1;Name=tF(GAA)N-exon1;Parent=tF(GAA)N
XIV	S-MART	exon	374924	374959	.	+	.	ID=tF(GAA)N-exon2;Name=tF(GAA)N-exon2;Parent=tF(GAA)N
XI	S-MART	transcript	358475	359566	.	+	.	seqedit=false;p_id=P4891;gene_id=YKL042W;tss_id=TSS831;nbOverlaps=0;ID=YKL042W;Name=SPC42
V	S-MART	transcript	512627	512983	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:23:14115:4687#0--HWUSI-EAS1656_0009_FC:3:102:13424:15058#0--HWUSI-EAS1656_00;p_id=P4218;gene_id=YER165C-A;tss_id=TSS4106;nbOverlaps=57;ID=YER165C-A;Name=YER165C-A
VIII	S-MART	transcript	130730	131446	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:96:6997:4759#0--HWUSI-EAS1656_0009_FC:3:47:12845:14172#0--HWUSI-EAS1656_0009;p_id=P4137;gene_id=YHR013C;tss_id=TSS6562;nbOverlaps=119;ID=YHR013C;Name=ARD1
III	S-MART	transcript	152837	153928	.	+	.	seqedit=false;p_id=P5669;gene_id=YCR019W;tss_id=TSS4565;nbOverlaps=0;ID=YCR019W;Name=MAK32
XI	S-MART	transcript	356748	357848	.	+	.	seqedit=false;p_id=P1353;gene_id=YKL043W;tss_id=TSS6009;nbOverlaps=0;ID=YKL043W;Name=PHD1
V	S-MART	transcript	510373	512106	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:4849:4149#0--HWUSI-EAS1656_0009_FC:3:47:11125:4923#0--HWUSI-EAS1656_0009_F;p_id=P4260;gene_id=YER165W;tss_id=TSS5172;nbOverlaps=1785;ID=YER165W;Name=PAB1
XI	S-MART	transcript	120380	122236	.	-	.	seqedit=false;p_id=P790;gene_id=YKL174C;tss_id=TSS4852;nbOverlaps=0;ID=YKL174C;Name=TPO5
XI	S-MART	transcript	353493	355079	.	+	.	seqedit=false;p_id=P6420;gene_id=YKL045W;tss_id=TSS6696;nbOverlaps=0;ID=YKL045W;Name=PRI2
V	S-MART	transcript	512744	517459	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:65:7925:14836#0--HWUSI-EAS1656_0009_FC:3:31:4787:8131#0--HWUSI-EAS1656_0009_;p_id=P223;gene_id=YER166W;tss_id=TSS2387;nbOverlaps=1024;ID=YER166W;Name=DNF1
XI	S-MART	transcript	118793	120304	.	+	.	seqedit=false;p_id=P1473;gene_id=YKL175W;tss_id=TSS1221;nbOverlaps=0;ID=YKL175W;Name=ZRT3
XI	S-MART	transcript	356322	356642	.	+	.	seqedit=false;p_id=P2356;gene_id=YKL044W;tss_id=TSS4228;nbOverlaps=0;ID=YKL044W;Name=YKL044W
XIII	S-MART	transcript	594886	597195	.	+	.	seqedit=false;p_id=P6476;gene_id=YMR167W;tss_id=TSS6638;nbOverlaps=0;ID=YMR167W;Name=MLH1
XI	S-MART	transcript	351275	352624	.	-	.	seqedit=false;p_id=P5581;gene_id=YKL046C;tss_id=TSS3725;nbOverlaps=0;ID=YKL046C;Name=DCW1
XIII	S-MART	transcript	593367	594473	.	-	.	seqedit=false;p_id=P5613;gene_id=YMR166C;tss_id=TSS1107;nbOverlaps=0;ID=YMR166C;Name=YMR166C
XI	S-MART	transcript	347214	349136	.	-	.	seqedit=false;p_id=P3787;gene_id=YKL048C;tss_id=TSS1011;nbOverlaps=0;ID=YKL048C;Name=ELM1
V	S-MART	transcript	523369	525759	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:22:12808:10493#0--HWUSI-EAS1656_0009_FC:3:2:14687:5386#0--HWUSI-EAS1656_0009;p_id=P6110;gene_id=YER169W;tss_id=TSS1736;nbOverlaps=168;ID=YER169W;Name=RPH1
XIII	S-MART	transcript	597332	599158	.	-	.	seqedit=false;p_id=P3464;gene_id=YMR168C;tss_id=TSS6579;nbOverlaps=0;ID=YMR168C;Name=CEP3
XI	S-MART	transcript	349463	351013	.	+	.	seqedit=false;p_id=P5448;gene_id=YKL047W;tss_id=TSS749;nbOverlaps=0;ID=YKL047W;Name=YKL047W
XIV	S-MART	transcript	609133	609510	.	-	.	seqedit=false;p_id=P5653;gene_id=YNL013C;tss_id=TSS3774;nbOverlaps=0;ID=YNL013C;Name=YNL013C
XI	S-MART	transcript	110464	112503	.	-	.	seqedit=false;p_id=P591;gene_id=YKL179C;tss_id=TSS1991;nbOverlaps=0;ID=YKL179C;Name=COY1
XI	S-MART	transcript	346075	346764	.	-	.	seqedit=false;p_id=P3751;gene_id=YKL049C;tss_id=TSS165;nbOverlaps=0;ID=YKL049C;Name=CSE4
V	S-MART	transcript	527082	529418	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:9699:4780#0--HWUSI-EAS1656_0009_FC:3:5:12058:9856#0--HWUSI-EAS1656_0009_F;p_id=P1257;gene_id=YER171W;tss_id=TSS6778;nbOverlaps=371;ID=YER171W;Name=RAD3
VII	S-MART	transcript	995639	996229	.	+	.	seqedit=false;p_id=P1939;gene_id=YGR251W;tss_id=TSS5137;nbOverlaps=0;ID=YGR251W;Name=NOP19
V	S-MART	transcript	529530	536021	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:68:2525:3194#0--HWUSI-EAS1656_0009_FC:3:104:15918:1127#0--HWUSI-EAS1656_0009;p_id=P3928;gene_id=YER172C;tss_id=TSS640;nbOverlaps=826;ID=YER172C;Name=BRR2
XV	S-MART	transcript	877230	877685	.	-	.	seqedit=false;p_id=P4825;gene_id=YOR298C-A;tss_id=TSS5765;nbOverlaps=0;ID=YOR298C-A;Name=MBF1
VIII	S-MART	transcript	168890	170344	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:25:19597:5636#0--HWUSI-EAS1656_0009_FC:3:102:3891:8837#0--HWUSI-EAS1656_0009;p_id=P6000;gene_id=YHR030C;tss_id=TSS6530;nbOverlaps=430;ID=YHR030C;Name=SLT2
VII	S-MART	transcript	991176	993521	.	-	.	seqedit=false;p_id=P1573;gene_id=YGR250C;tss_id=TSS2803;nbOverlaps=0;ID=YGR250C;Name=YGR250C
XI	S-MART	transcript	186460	188640	.	-	.	seqedit=false;p_id=P2808;gene_id=YKL135C;tss_id=TSS5121;nbOverlaps=0;ID=YKL135C;Name=APL2
V	S-MART	transcript	536275	536655	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:37:18751:19999#0--HWUSI-EAS1656_0009_FC:3:75:9725:11148#0--HWUSI-EAS1656_000;p_id=P2820;gene_id=YER172C-A;tss_id=TSS6572;nbOverlaps=23;ID=YER172C-A;Name=YER172C-A
XV	S-MART	transcript	875599	877038	.	+	.	seqedit=false;p_id=P4663;gene_id=YOR298W;tss_id=TSS5824;nbOverlaps=0;ID=YOR298W;Name=MUM3
XI	S-MART	transcript	339668	340546	.	-	.	seqedit=false;p_id=P4621;gene_id=YKL052C;tss_id=TSS6796;nbOverlaps=0;ID=YKL052C;Name=ASK1
XI	S-MART	transcript	130634	131050	.	+	.	seqedit=false;p_id=P2952;gene_id=YKL170W;tss_id=TSS4739;nbOverlaps=0;ID=YKL170W;Name=MRPL38
XIV	S-MART	transcript	602138	602476	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:17418:5788#0--HWUSI-EAS1656_0009_FC:3:69:4552:4470#0--HWUSI-EAS1656_0009_;p_id=P240;gene_id=YNL017C;tss_id=TSS1879;nbOverlaps=14;ID=YNL017C;Name=YNL017C
XV	S-MART	transcript	878435	880675	.	+	.	seqedit=false;p_id=P1550;gene_id=YOR299W;tss_id=TSS2908;nbOverlaps=0;ID=YOR299W;Name=BUD7
III	S-MART	transcript	154830	155096	.	-	.	seqedit=false;p_id=P3158;gene_id=YCR020C-A;tss_id=TSS558;nbOverlaps=0;ID=YCR020C-A;Name=MAK31
XI	S-MART	transcript	339182	339442	.	-	.	seqedit=false;p_id=P4388;gene_id=YKL053C-A;tss_id=TSS1000;nbOverlaps=0;ID=YKL053C-A;Name=MDM35
V	S-MART	transcript	538434	539168	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:16:6000:16069#0--HWUSI-EAS1656_0009_FC:3:75:4607:4228#0--HWUSI-EAS1656_0009_;p_id=P1859;gene_id=YER174C;tss_id=TSS3340;nbOverlaps=84;ID=YER174C;Name=GRX4
XV	S-MART	transcript	880965	882272	.	+	.	seqedit=false;p_id=P1045;gene_id=YOR301W;tss_id=TSS2958;nbOverlaps=0;ID=YOR301W;Name=RAX1
XI	S-MART	transcript	336537	338753	.	-	.	seqedit=false;p_id=P2934;gene_id=YKL054C;tss_id=TSS3085;nbOverlaps=0;ID=YKL054C;Name=DEF1
V	S-MART	transcript	539464	540363	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:73:19122:13928#0--HWUSI-EAS1656_0009_FC:3:120:4117:11016#0--HWUSI-EAS1656_00;p_id=P285;gene_id=YER175C;tss_id=TSS3454;nbOverlaps=71;ID=YER175C;Name=TMT1
XV	S-MART	transcript	880575	880883	.	+	.	seqedit=false;p_id=P2417;gene_id=YOR300W;tss_id=TSS6901;nbOverlaps=0;ID=YOR300W;Name=YOR300W
XI	S-MART	transcript	339572	339946	.	+	.	seqedit=false;p_id=P2962;gene_id=YKL053W;tss_id=TSS5386;nbOverlaps=0;ID=YKL053W;Name=YKL053W
V	S-MART	transcript	540650	540814	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:1:14727:11176#0--HWUSI-EAS1656_0009_FC:3:77:6090:11227#0--HWUSI-EAS1656_0009;p_id=P5779;gene_id=YER175W-A;tss_id=TSS4105;nbOverlaps=12;ID=YER175W-A;Name=YER175W-A
XII	S-MART	transcript	614755	616191	.	+	.	seqedit=false;p_id=P3963;gene_id=YLR238W;tss_id=TSS6728;nbOverlaps=0;ID=YLR238W;Name=FAR10
XVI	S-MART	transcript	150614	151330	.	+	.	seqedit=false;p_id=P2939;gene_id=YPL213W;tss_id=TSS1815;nbOverlaps=0;ID=YPL213W;Name=LEA1
XI	S-MART	transcript	335321	336157	.	-	.	seqedit=false;p_id=P75;gene_id=YKL055C;tss_id=TSS3384;nbOverlaps=0;ID=YKL055C;Name=OAR1
V	S-MART	transcript	541690	545055	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:11:14965:10358#0--HWUSI-EAS1656_0009_FC:3:22:9408:12673#0--HWUSI-EAS1656_000;p_id=P961;gene_id=YER176W;tss_id=TSS5868;nbOverlaps=265;ID=YER176W;Name=ECM32
XV	S-MART	transcript	882765	882842	.	+	.	seqedit=false;p_id=P1908;gene_id=YOR302W;tss_id=TSS2824;nbOverlaps=0;ID=YOR302W;Name=YOR302W
XI	S-MART	transcript	334412	334915	.	-	.	seqedit=false;p_id=P4460;gene_id=YKL056C;tss_id=TSS2296;nbOverlaps=0;ID=YKL056C;Name=TMA19
V	S-MART	transcript	545611	546414	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:101:3502:6509#0--HWUSI-EAS1656_0009_FC:3:77:6012:2162#0--HWUSI-EAS1656_0009_;p_id=P422;gene_id=YER177W;tss_id=TSS1595;nbOverlaps=3494;ID=YER177W;Name=BMH1
XV	S-MART	transcript	888520	888750	.	-	.	seqedit=false;p_id=P4985;gene_id=YOR304C-A;tss_id=TSS2256;nbOverlaps=0;ID=YOR304C-A;Name=YOR304C-A
XI	S-MART	transcript	330856	333969	.	-	.	seqedit=false;p_id=P5497;gene_id=YKL057C;tss_id=TSS4147;nbOverlaps=0;ID=YKL057C;Name=NUP120
V	S-MART	transcript	546817	548079	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:35:3586:4575#0--HWUSI-EAS1656_0009_FC:3:4:6440:11217#0--HWUSI-EAS1656_0009_F;p_id=P4328;gene_id=YER178W;tss_id=TSS4541;nbOverlaps=1732;ID=YER178W;Name=PDA1
XV	S-MART	transcript	884514	887876	.	+	.	seqedit=false;p_id=P2812;gene_id=YOR304W;tss_id=TSS4767;nbOverlaps=0;ID=YOR304W;Name=ISW2
XI	S-MART	transcript	330166	330534	.	+	.	seqedit=false;p_id=P5298;gene_id=YKL058W;tss_id=TSS3810;nbOverlaps=0;ID=YKL058W;Name=TOA2
V	S-MART	transcript	548421	549517	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:72:6451:2260#0--HWUSI-EAS1656_0009_FC:3:10:6347:5576#0--HWUSI-EAS1656_0009_F;p_id=P1932;gene_id=YER179W;tss_id=TSS6158;nbOverlaps=27;ID=YER179W;Name=DMC1
V	S-MART	exon	548421	548552	.	+	.	ID=YER179W-exon1;Name=DMC1-exon1;Parent=YER179W
V	S-MART	exon	548645	549517	.	+	.	ID=YER179W-exon2;Name=DMC1-exon2;Parent=YER179W
XV	S-MART	transcript	889022	889750	.	+	.	seqedit=false;p_id=P4961;gene_id=YOR305W;tss_id=TSS6146;nbOverlaps=0;ID=YOR305W;Name=RRG7
XI	S-MART	transcript	328118	329443	.	-	.	seqedit=false;p_id=P4088;gene_id=YKL059C;tss_id=TSS6296;nbOverlaps=0;ID=YKL059C;Name=MPE1
XV	S-MART	transcript	889867	891432	.	-	.	seqedit=false;p_id=P4304;gene_id=YOR306C;tss_id=TSS7023;nbOverlaps=0;ID=YOR306C;Name=MCH5
VIII	S-MART	transcript	175275	175394	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:72:16909:6140#0--HWUSI-EAS1656_0009_FC:3:96:14079:2249#0--HWUSI-EAS1656_0009;p_id=P785;gene_id=YHR032C-A;tss_id=TSS1121;nbOverlaps=13;ID=YHR032C-A;Name=YHR032C-A
VII	S-MART	transcript	1014321	1016750	.	-	.	seqedit=false;p_id=P2717;gene_id=YGR261C;tss_id=TSS2113;nbOverlaps=0;ID=YGR261C;Name=APL6
VII	S-MART	transcript	1016974	1017759	.	-	.	seqedit=false;p_id=P6363;gene_id=YGR262C;tss_id=TSS6904;nbOverlaps=0;ID=YGR262C;Name=BUD32
V	S-MART	transcript	549724	550527	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:111:3639:6731#0--HWUSI-EAS1656_0009_FC:3:4:9071:7261#0--HWUSI-EAS1656_0009_F;p_id=P2990;gene_id=YER180C;tss_id=TSS3213;nbOverlaps=63;ID=YER180C;Name=ISC10
VII	S-MART	transcript	1017967	1019241	.	-	.	seqedit=false;p_id=P3448;gene_id=YGR263C;tss_id=TSS2240;nbOverlaps=0;ID=YGR263C;Name=SAY1
V	S-MART	transcript	550865	551122	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:48:10885:11996#0--HWUSI-EAS1656_0009_FC:3:29:2891:19041#0--HWUSI-EAS1656_000;p_id=P2382;gene_id=YER180C-A;tss_id=TSS3246;nbOverlaps=17;ID=YER180C-A;Name=SLO1
XV	S-MART	transcript	896825	898360	.	-	.	seqedit=false;p_id=P4315;gene_id=YOR310C;tss_id=TSS2756;nbOverlaps=0;ID=YOR310C;Name=NOP58
VII	S-MART	transcript	1019598	1021853	.	-	.	seqedit=false;p_id=P2531;gene_id=YGR264C;tss_id=TSS1052;nbOverlaps=0;ID=YGR264C;Name=MES1
V	S-MART	transcript	552525	553259	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:84:1730:8357#0--HWUSI-EAS1656_0009_FC:3:89:6606:6019#0--HWUSI-EAS1656_0009_F;p_id=P1188;gene_id=YER182W;tss_id=TSS5161;nbOverlaps=40;ID=YER182W;Name=FMP10
XV	S-MART	transcript	896698	897078	.	-	.	seqedit=false;p_id=P2534;gene_id=YOR309C;tss_id=TSS5047;nbOverlaps=0;ID=YOR309C;Name=YOR309C
XI	S-MART	transcript	321015	321518	.	-	.	seqedit=false;p_id=P4125;gene_id=YKL063C;tss_id=TSS4684;nbOverlaps=0;ID=YKL063C;Name=YKL063C
V	S-MART	transcript	551473	551796	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:38:15815:2373#0--HWUSI-EAS1656_0009_FC:3:15:15802:14730#0;p_id=P4592;gene_id=YER181C;tss_id=TSS6601;nbOverlaps=2;ID=YER181C;Name=YER181C
XV	S-MART	transcript	899056	899928	.	-	.	seqedit=false;p_id=P1140;gene_id=YOR311C;tss_id=TSS2014;nbOverlaps=0;ID=YOR311C;Name=DGK1
VIII	S-MART	transcript	173344	175089	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:100:17670:4458#0--HWUSI-EAS1656_0009_FC:3:6:16615:5688#0--HWUSI-EAS1656_0009;p_id=P6608;gene_id=YHR032W;tss_id=TSS573;nbOverlaps=512;ID=YHR032W;Name=ERC1
VII	S-MART	transcript	1021648	1022058	.	+	.	seqedit=false;p_id=P2987;gene_id=YGR265W;tss_id=TSS256;nbOverlaps=0;ID=YGR265W;Name=YGR265W
V	S-MART	transcript	553334	553969	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:16950:14516#0--HWUSI-EAS1656_0009_FC:3:42:7607:18270#0--HWUSI-EAS1656_00;p_id=P2760;gene_id=YER183C;tss_id=TSS2654;nbOverlaps=170;ID=YER183C;Name=FAU1
XV	S-MART	transcript	900250	901194	.	-	.	seqedit=false;p_id=P6579;gene_id=YOR312C;tss_id=TSS1966;nbOverlaps=0;ID=YOR312C;Name=RPL20B
XV	S-MART	exon	900250	900767	.	-	.	ID=YOR312C-exon1;Name=RPL20B-exon1;Parent=YOR312C
XV	S-MART	exon	901194	901194	.	-	.	ID=YOR312C-exon2;Name=RPL20B-exon2;Parent=YOR312C
XVI	S-MART	transcript	622540	622631	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:18104:5842#0--HWUSI-EAS1656_0009_FC:3:56:11954:3071#0--HWUSI-EAS1656_0009;gene_id=tF(GAA)P2;tss_id=TSS4775;nbOverlaps=184;ID=tF(GAA)P2;Name=tF(GAA)P2
XVI	S-MART	exon	622540	622575	.	-	.	ID=tF(GAA)P2-exon1;Name=tF(GAA)P2-exon1;Parent=tF(GAA)P2
XVI	S-MART	exon	622595	622631	.	-	.	ID=tF(GAA)P2-exon2;Name=tF(GAA)P2-exon2;Parent=tF(GAA)P2
VII	S-MART	transcript	1022656	1024761	.	+	.	seqedit=false;p_id=P6216;gene_id=YGR266W;tss_id=TSS3478;nbOverlaps=0;ID=YGR266W;Name=YGR266W
V	S-MART	transcript	559454	560365	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:22:8582:16322#0--HWUSI-EAS1656_0009_FC:3:60:14021:19681#0--HWUSI-EAS1656_000;p_id=P4127;gene_id=YER185W;tss_id=TSS3927;nbOverlaps=23;ID=YER185W;Name=PUG1
XVI	S-MART	transcript	861934	862014	.	+	.	seqedit=false;p_id=P340;gene_id=YPR160W-A;tss_id=TSS4120;nbOverlaps=0;ID=YPR160W-A;Name=YPR160W-A
III	S-MART	transcript	160744	162222	.	-	.	seqedit=false;p_id=P1137;gene_id=YCR024C;tss_id=TSS4632;nbOverlaps=0;ID=YCR024C;Name=SLM5
VII	S-MART	transcript	1026057	1026653	.	-	.	seqedit=false;p_id=P4236;gene_id=YGR268C;tss_id=TSS976;nbOverlaps=0;ID=YGR268C;Name=HUA1
V	S-MART	transcript	556296	558680	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:17:19739:5233#0--HWUSI-EAS1656_0009_FC:3:25:2760:15356#0--HWUSI-EAS1656_0009;p_id=P2324;gene_id=YER184C;tss_id=TSS1563;nbOverlaps=102;ID=YER184C;Name=YER184C
XVI	S-MART	transcript	891101	892078	.	-	.	seqedit=false;p_id=P6146;gene_id=YPR176C;tss_id=TSS222;nbOverlaps=0;ID=YPR176C;Name=BET2
IX	S-MART	transcript	205635	210132	.	+	.	seqedit=false;p_id=P687;gene_id=YIL082W-A;tss_id=TSS169;nbOverlaps=0;ID=YIL082W-A;Name=YIL082W-A
IX	S-MART	exon	205635	206485	.	+	.	ID=YIL082W-A-exon1;Name=YIL082W-A-exon1;Parent=YIL082W-A
IX	S-MART	exon	206487	210132	.	+	.	ID=YIL082W-A-exon2;Name=YIL082W-A-exon2;Parent=YIL082W-A
V	S-MART	transcript	569608	569907	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:34:7868:5097#0--HWUSI-EAS1656_0009_FC:3:105:5108:9783#0--HWUSI-EAS1656_0009_;p_id=P4078;gene_id=YER188C-A;tss_id=TSS6458;nbOverlaps=3;ID=YER188C-A;Name=YER188C-A
XV	S-MART	transcript	901858	902874	.	-	.	seqedit=false;p_id=P5915;gene_id=YOR313C;tss_id=TSS6187;nbOverlaps=0;ID=YOR313C;Name=SPS4
XI	S-MART	transcript	310199	313078	.	+	.	seqedit=false;p_id=P899;gene_id=YKL068W;tss_id=TSS5211;nbOverlaps=0;ID=YKL068W;Name=NUP100
V	S-MART	transcript	561705	562625	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:10:2518:15787#0--HWUSI-EAS1656_0009_FC:3:3:5283:1208#0--HWUSI-EAS1656_0009_F;p_id=P1905;gene_id=YER186C;tss_id=TSS6378;nbOverlaps=239;ID=YER186C;Name=YER186C
XV	S-MART	transcript	904458	904568	.	+	.	seqedit=false;p_id=P5678;gene_id=YOR314W-A;tss_id=TSS510;nbOverlaps=0;ID=YOR314W-A;Name=YOR314W-A
X	S-MART	transcript	83448	83819	.	+	.	seqedit=false;p_id=P2036;gene_id=YJL184W;tss_id=TSS1453;nbOverlaps=0;ID=YJL184W;Name=GON7
VIII	S-MART	transcript	175195	175374	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:72:16909:6140#0--HWUSI-EAS1656_0009_FC:3:17:9310:10849#0--HWUSI-EAS1656_0009;p_id=P3450;gene_id=YHR032W-A;tss_id=TSS512;nbOverlaps=28;ID=YHR032W-A;Name=YHR032W-A
X	S-MART	transcript	80155	81915	.	+	.	seqedit=false;p_id=P107;gene_id=YJL186W;tss_id=TSS243;nbOverlaps=0;ID=YJL186W;Name=MNN5
X	S-MART	transcript	82095	82976	.	-	.	seqedit=false;p_id=P1082;gene_id=YJL185C;tss_id=TSS1024;nbOverlaps=0;ID=YJL185C;Name=YJL185C
V	S-MART	transcript	566230	566655	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:7:15009:12264#0--HWUSI-EAS1656_0009_FC:3:17:6402:14978#0--HWUSI-EAS1656_0009;p_id=P3428;gene_id=YER187W;tss_id=TSS3055;nbOverlaps=10;ID=YER187W;Name=YER187W
X	S-MART	transcript	76803	79262	.	-	.	seqedit=false;p_id=P12;gene_id=YJL187C;tss_id=TSS5929;nbOverlaps=0;ID=YJL187C;Name=SWE1
X	S-MART	transcript	76202	76510	.	-	.	seqedit=false;p_id=P3468;gene_id=YJL188C;tss_id=TSS3066;nbOverlaps=0;ID=YJL188C;Name=BUD19
XV	S-MART	transcript	903043	903372	.	+	.	seqedit=false;p_id=P1165;gene_id=YOR314W;tss_id=TSS3440;nbOverlaps=0;ID=YOR314W;Name=YOR314W
X	S-MART	transcript	75933	76474	.	+	.	seqedit=false;p_id=P5299;gene_id=YJL189W;tss_id=TSS2780;nbOverlaps=0;ID=YJL189W;Name=RPL39
X	S-MART	exon	75933	75938	.	+	.	ID=YJL189W-exon1;Name=RPL39-exon1;Parent=YJL189W
X	S-MART	exon	76325	76474	.	+	.	ID=YJL189W-exon2;Name=RPL39-exon2;Parent=YJL189W
VII	S-MART	transcript	84885	87302	.	+	.	seqedit=false;p_id=P3215;gene_id=YGL216W;tss_id=TSS1305;nbOverlaps=0;ID=YGL216W;Name=KIP3
VII	S-MART	transcript	82878	84257	.	-	.	seqedit=false;p_id=P984;gene_id=YGL219C;tss_id=TSS461;nbOverlaps=0;ID=YGL219C;Name=MDM34
XI	S-MART	transcript	122517	125543	.	+	.	seqedit=false;p_id=P2378;gene_id=YKL173W;tss_id=TSS1482;nbOverlaps=0;ID=YKL173W;Name=SNU114
X	S-MART	transcript	74910	75302	.	-	.	seqedit=false;p_id=P6468;gene_id=YJL190C;tss_id=TSS3469;nbOverlaps=0;ID=YJL190C;Name=RPS22A
V	S-MART	transcript	574804	575379	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:2351:19388#0--HWUSI-EAS1656_0009_FC:3:54:12342:8151#0--HWUSI-EAS1656_0009;p_id=P4612;gene_id=YER190C-A;tss_id=TSS6214;nbOverlaps=32;ID=YER190C-A;Name=YER190C-A
X	S-MART	transcript	73787	74611	.	+	.	seqedit=false;p_id=P6681;gene_id=YJL191W;tss_id=TSS1670;nbOverlaps=0;ID=YJL191W;Name=RPS14B
X	S-MART	exon	73787	73796	.	+	.	ID=YJL191W-exon1;Name=RPS14B-exon1;Parent=YJL191W
X	S-MART	exon	74205	74611	.	+	.	ID=YJL191W-exon2;Name=RPS14B-exon2;Parent=YJL191W
VII	S-MART	transcript	82374	82736	.	+	.	seqedit=false;p_id=P1219;gene_id=YGL220W;tss_id=TSS2973;nbOverlaps=0;ID=YGL220W;Name=FRA2
XV	S-MART	transcript	904760	905800	.	+	.	seqedit=false;p_id=P4274;gene_id=YOR315W;tss_id=TSS2778;nbOverlaps=0;ID=YOR315W;Name=SFG1
VII	S-MART	transcript	81426	82292	.	-	.	seqedit=false;p_id=P1297;gene_id=YGL221C;tss_id=TSS3195;nbOverlaps=0;ID=YGL221C;Name=NIF3
X	S-MART	transcript	72710	73414	.	-	.	seqedit=false;p_id=P554;gene_id=YJL192C;tss_id=TSS5279;nbOverlaps=0;ID=YJL192C;Name=SOP4
X	S-MART	transcript	69338	70879	.	+	.	seqedit=false;p_id=P1632;gene_id=YJL194W;tss_id=TSS5656;nbOverlaps=0;ID=YJL194W;Name=CDC6
X	S-MART	transcript	71366	72574	.	+	.	seqedit=false;p_id=P1683;gene_id=YJL193W;tss_id=TSS3987;nbOverlaps=0;ID=YJL193W;Name=YJL193W
V	S-MART	transcript	568040	568759	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:53:14948:14832#0;p_id=P3990;gene_id=YER188W;tss_id=TSS6162;nbOverlaps=1;ID=YER188W;Name=YER188W
X	S-MART	transcript	67850	68782	.	-	.	seqedit=false;p_id=P2659;gene_id=YJL196C;tss_id=TSS2509;nbOverlaps=0;ID=YJL196C;Name=ELO1
X	S-MART	transcript	69241	69942	.	-	.	seqedit=false;p_id=P472;gene_id=YJL195C;tss_id=TSS4227;nbOverlaps=0;ID=YJL195C;Name=YJL195C
XV	S-MART	transcript	906236	907555	.	-	.	seqedit=false;p_id=P1194;gene_id=YOR316C;tss_id=TSS1519;nbOverlaps=0;ID=YOR316C;Name=COT1
XVI	S-MART	transcript	892332	893729	.	+	.	seqedit=false;p_id=P4560;gene_id=YPR178W;tss_id=TSS2076;nbOverlaps=0;ID=YPR178W;Name=PRP4
X	S-MART	transcript	65805	66086	.	-	.	seqedit=false;p_id=P5947;gene_id=YJL197C-A;tss_id=TSS5305;nbOverlaps=0;ID=YJL197C-A;Name=YJL197C-A
X	S-MART	transcript	63805	67569	.	+	.	seqedit=false;p_id=P5940;gene_id=YJL197W;tss_id=TSS4811;nbOverlaps=0;ID=YJL197W;Name=UBP12
X	S-MART	transcript	60844	63489	.	+	.	seqedit=false;p_id=P2120;gene_id=YJL198W;tss_id=TSS6529;nbOverlaps=0;ID=YJL198W;Name=PHO90
X	S-MART	transcript	59856	60182	.	-	.	seqedit=false;p_id=P1027;gene_id=YJL199C;tss_id=TSS2969;nbOverlaps=0;ID=YJL199C;Name=MBB1
VII	S-MART	transcript	67598	69331	.	+	.	seqedit=false;p_id=P2627;gene_id=YGL228W;tss_id=TSS5671;nbOverlaps=0;ID=YGL228W;Name=SHE10
X	S-MART	transcript	54379	56178	.	+	.	seqedit=false;p_id=P5318;gene_id=YJL201W;tss_id=TSS655;nbOverlaps=0;ID=YJL201W;Name=ECM25
XV	S-MART	transcript	907726	907935	.	-	.	seqedit=false;p_id=P4765;gene_id=YOR316C-A;tss_id=TSS3349;nbOverlaps=0;ID=YOR316C-A;Name=YOR316C-A
X	S-MART	transcript	53341	54183	.	+	.	seqedit=false;p_id=P5088;gene_id=YJL203W;tss_id=TSS2582;nbOverlaps=0;ID=YJL203W;Name=PRP21
X	S-MART	transcript	53943	54290	.	-	.	seqedit=false;p_id=P672;gene_id=YJL202C;tss_id=TSS6613;nbOverlaps=0;ID=YJL202C;Name=YJL202C
X	S-MART	transcript	50629	53151	.	-	.	seqedit=false;p_id=P1565;gene_id=YJL204C;tss_id=TSS5375;nbOverlaps=0;ID=YJL204C;Name=RCY1
X	S-MART	transcript	50139	50443	.	-	.	seqedit=false;p_id=P4320;gene_id=YJL205C;tss_id=TSS1884;nbOverlaps=0;ID=YJL205C;Name=NCE101
X	S-MART	exon	50139	50268	.	-	.	ID=YJL205C-exon1;Name=NCE101-exon1;Parent=YJL205C
X	S-MART	exon	50412	50443	.	-	.	ID=YJL205C-exon2;Name=NCE101-exon2;Parent=YJL205C
VII	S-MART	transcript	59122	61854	.	+	.	seqedit=false;p_id=P2880;gene_id=YGL233W;tss_id=TSS1517;nbOverlaps=0;ID=YGL233W;Name=SEC15
XV	S-MART	transcript	909343	911445	.	+	.	seqedit=false;p_id=P4853;gene_id=YOR317W;tss_id=TSS6279;nbOverlaps=0;ID=YOR317W;Name=FAA1
X	S-MART	transcript	41389	47433	.	-	.	seqedit=false;p_id=P2174;gene_id=YJL207C;tss_id=TSS4372;nbOverlaps=0;ID=YJL207C;Name=LAA1
X	S-MART	transcript	47659	49935	.	-	.	seqedit=false;p_id=P5376;gene_id=YJL206C;tss_id=TSS3792;nbOverlaps=0;ID=YJL206C;Name=YJL206C
X	S-MART	transcript	40194	41183	.	-	.	seqedit=false;p_id=P2537;gene_id=YJL208C;tss_id=TSS1155;nbOverlaps=0;ID=YJL208C;Name=NUC1
X	S-MART	transcript	38005	39969	.	+	.	seqedit=false;p_id=P5217;gene_id=YJL209W;tss_id=TSS5077;nbOverlaps=0;ID=YJL209W;Name=CBP1
V	S-MART	transcript	571480	576525	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:102:16971:19763#0--HWUSI-EAS1656_0;p_id=P6472;gene_id=YER190W;tss_id=TSS194;nbOverlaps=509;ID=YER190W;Name=YRF1-2
X	S-MART	transcript	36919	37734	.	+	.	seqedit=false;p_id=P1580;gene_id=YJL210W;tss_id=TSS5683;nbOverlaps=0;ID=YJL210W;Name=PEX2
X	S-MART	transcript	33850	36249	.	-	.	seqedit=false;p_id=P4166;gene_id=YJL212C;tss_id=TSS3539;nbOverlaps=0;ID=YJL212C;Name=OPT1
XV	S-MART	transcript	912822	913463	.	+	.	seqedit=false;p_id=P2445;gene_id=YOR319W;tss_id=TSS1144;nbOverlaps=0;ID=YOR319W;Name=HSH49
X	S-MART	transcript	36757	37200	.	-	.	seqedit=false;p_id=P6664;gene_id=YJL211C;tss_id=TSS5268;nbOverlaps=0;ID=YJL211C;Name=YJL211C
X	S-MART	transcript	26887	28596	.	+	.	seqedit=false;p_id=P1249;gene_id=YJL214W;tss_id=TSS5393;nbOverlaps=0;ID=YJL214W;Name=HXT8
X	S-MART	transcript	32163	33158	.	+	.	seqedit=false;p_id=P3265;gene_id=YJL213W;tss_id=TSS2998;nbOverlaps=0;ID=YJL213W;Name=YJL213W
X	S-MART	transcript	24341	26086	.	-	.	seqedit=false;p_id=P3153;gene_id=YJL216C;tss_id=TSS2423;nbOverlaps=0;ID=YJL216C;Name=IMA5
VI	S-MART	transcript	147131	148459	.	+	.	seqedit=false;p_id=P2803;gene_id=YFL001W;tss_id=TSS6062;nbOverlaps=0;ID=YFL001W;Name=DEG1
X	S-MART	transcript	26412	26771	.	-	.	seqedit=false;p_id=P212;gene_id=YJL215C;tss_id=TSS3426;nbOverlaps=0;ID=YJL215C;Name=YJL215C
X	S-MART	transcript	23133	23729	.	+	.	seqedit=false;p_id=P3949;gene_id=YJL217W;tss_id=TSS5519;nbOverlaps=0;ID=YJL217W;Name=REE1
XV	S-MART	transcript	911784	912436	.	-	.	seqedit=false;p_id=P2843;gene_id=YOR318C;tss_id=TSS3169;nbOverlaps=0;ID=YOR318C;Name=YOR318C
XV	S-MART	exon	911784	912085	.	-	.	ID=YOR318C-exon1;Name=YOR318C-exon1;Parent=YOR318C
XV	S-MART	exon	912433	912436	.	-	.	ID=YOR318C-exon2;Name=YOR318C-exon2;Parent=YOR318C
X	S-MART	transcript	19497	21200	.	+	.	seqedit=false;p_id=P3443;gene_id=YJL219W;tss_id=TSS1258;nbOverlaps=0;ID=YJL219W;Name=HXT9
X	S-MART	transcript	21973	22563	.	+	.	seqedit=false;p_id=P5999;gene_id=YJL218W;tss_id=TSS1982;nbOverlaps=0;ID=YJL218W;Name=YJL218W
X	S-MART	transcript	16767	18536	.	-	.	seqedit=false;p_id=P338;gene_id=YJL221C;tss_id=TSS7041;nbOverlaps=0;ID=YJL221C;Name=IMA4
X	S-MART	transcript	18243	18695	.	+	.	seqedit=false;p_id=P844;gene_id=YJL220W;tss_id=TSS706;nbOverlaps=0;ID=YJL220W;Name=YJL220W
VI	S-MART	transcript	145114	146934	.	-	.	seqedit=false;p_id=P4482;gene_id=YFL002C;tss_id=TSS3210;nbOverlaps=0;ID=YFL002C;Name=SPB4
X	S-MART	transcript	11475	16124	.	+	.	seqedit=false;p_id=P721;gene_id=YJL222W;tss_id=TSS1265;nbOverlaps=0;ID=YJL222W;Name=VTH2
X	S-MART	transcript	9452	9679	.	+	.	seqedit=false;p_id=P3792;gene_id=YJL222W-A;tss_id=TSS3638;nbOverlaps=0;ID=YJL222W-A;Name=YJL222W-A
XVI	S-MART	transcript	892313	892684	.	-	.	seqedit=false;p_id=P3281;gene_id=YPR177C;tss_id=TSS369;nbOverlaps=0;ID=YPR177C;Name=YPR177C
X	S-MART	transcript	9346	9483	.	+	.	seqedit=false;p_id=P1787;gene_id=YJL222W-B;tss_id=TSS6144;nbOverlaps=0;ID=YJL222W-B;Name=YJL222W-B
X	S-MART	transcript	8776	9138	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:13748:3674#0;p_id=P2373;gene_id=YJL223C;tss_id=TSS5539;nbOverlaps=1;ID=YJL223C;Name=PAU1
X	S-MART	transcript	829	1311	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:6:3389:15582#0--HWUSI-EAS1656_0009_FC:3:25:16807:21280#0--HWUSI-EAS1656_0009;p_id=P4623;gene_id=YJL225W-A;tss_id=TSS3808;nbOverlaps=58;ID=YJL225W-A;Name=YJL225W-A
XVI	S-MART	transcript	883378	883563	.	+	.	seqedit=false;p_id=P6323;gene_id=YPR170W-A;tss_id=TSS4812;nbOverlaps=0;ID=YPR170W-A;Name=YPR170W-A
X	S-MART	transcript	466	6130	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:10342:6960#0--HWUSI-EAS1656_0009_FC:3:31:15306:18101#0--HWUSI-EAS1656_00;p_id=P1723;gene_id=YJL225C;tss_id=TSS2960;nbOverlaps=430;ID=YJL225C;Name=YJL225C
X	S-MART	exon	466	4581	.	-	.	ID=YJL225C-exon1;Name=YJL225C-exon1;Parent=YJL225C
X	S-MART	exon	4970	6130	.	-	.	ID=YJL225C-exon2;Name=YJL225C-exon2;Parent=YJL225C
VI	S-MART	transcript	138204	143517	.	+	.	seqedit=false;p_id=P2072;gene_id=YFL002W-A;tss_id=TSS3917;nbOverlaps=0;ID=YFL002W-A;Name=YFL002W-A
VI	S-MART	exon	138204	139496	.	+	.	ID=YFL002W-A-exon1;Name=YFL002W-A-exon1;Parent=YFL002W-A
VI	S-MART	exon	139498	143517	.	+	.	ID=YFL002W-A-exon2;Name=YFL002W-A-exon2;Parent=YFL002W-A
VII	S-MART	transcript	22304	23203	.	+	.	seqedit=false;p_id=P3365;gene_id=YGL254W;tss_id=TSS4878;nbOverlaps=0;ID=YGL254W;Name=FZF1
VII	S-MART	transcript	20978	22108	.	+	.	seqedit=false;p_id=P2545;gene_id=YGL255W;tss_id=TSS7005;nbOverlaps=0;ID=YGL255W;Name=ZRT1
X	S-MART	transcript	436802	438610	.	+	.	seqedit=false;p_id=P362;gene_id=YJR001W;tss_id=TSS257;nbOverlaps=0;ID=YJR001W;Name=AVT1
X	S-MART	transcript	438865	440646	.	+	.	seqedit=false;p_id=P3614;gene_id=YJR002W;tss_id=TSS6035;nbOverlaps=0;ID=YJR002W;Name=MPP10
X	S-MART	transcript	442909	444861	.	-	.	seqedit=false;p_id=P341;gene_id=YJR004C;tss_id=TSS5647;nbOverlaps=0;ID=YJR004C;Name=SAG1
X	S-MART	transcript	440994	442553	.	-	.	seqedit=false;p_id=P299;gene_id=YJR003C;tss_id=TSS386;nbOverlaps=0;ID=YJR003C;Name=YJR003C
X	S-MART	transcript	448477	448758	.	-	.	seqedit=false;p_id=P2689;gene_id=YJR005C-A;tss_id=TSS5536;nbOverlaps=0;ID=YJR005C-A;Name=YJR005C-A
X	S-MART	transcript	445923	448025	.	+	.	seqedit=false;p_id=P2023;gene_id=YJR005W;tss_id=TSS1521;nbOverlaps=0;ID=YJR005W;Name=APL1
XV	S-MART	transcript	913619	915094	.	-	.	seqedit=false;p_id=P4667;gene_id=YOR320C;tss_id=TSS5874;nbOverlaps=0;ID=YOR320C;Name=GNT1
X	S-MART	transcript	449202	450665	.	+	.	seqedit=false;p_id=P6679;gene_id=YJR006W;tss_id=TSS3789;nbOverlaps=0;ID=YJR006W;Name=POL31
X	S-MART	transcript	451020	451934	.	+	.	seqedit=false;p_id=P2975;gene_id=YJR007W;tss_id=TSS4085;nbOverlaps=0;ID=YJR007W;Name=SUI2
X	S-MART	transcript	647607	649142	.	+	.	seqedit=false;p_id=P4115;gene_id=YJR121W;tss_id=TSS4846;nbOverlaps=0;ID=YJR121W;Name=ATP2
X	S-MART	transcript	452430	453446	.	+	.	seqedit=false;p_id=P3505;gene_id=YJR008W;tss_id=TSS1404;nbOverlaps=0;ID=YJR008W;Name=YJR008W
XII	S-MART	transcript	861718	862254	.	-	.	seqedit=false;p_id=P4311;gene_id=YLR370C;tss_id=TSS6689;nbOverlaps=0;ID=YLR370C;Name=ARC18
XV	S-MART	transcript	916030	918291	.	+	.	seqedit=false;p_id=P2863;gene_id=YOR321W;tss_id=TSS6486;nbOverlaps=0;ID=YOR321W;Name=PMT3
XII	S-MART	transcript	862714	866784	.	+	.	seqedit=false;p_id=P4839;gene_id=YLR371W;tss_id=TSS1972;nbOverlaps=0;ID=YLR371W;Name=ROM2
IV	S-MART	transcript	1257008	1257079	.	-	.	seqedit=false;gene_id=tG(CCC)D;tss_id=TSS6977;nbOverlaps=0;ID=tG(CCC)D;Name=SUF3
XII	S-MART	transcript	867354	868391	.	+	.	seqedit=false;p_id=P5834;gene_id=YLR372W;tss_id=TSS2609;nbOverlaps=0;ID=YLR372W;Name=SUR4
XII	S-MART	transcript	868662	871367	.	-	.	seqedit=false;p_id=P4280;gene_id=YLR373C;tss_id=TSS6192;nbOverlaps=0;ID=YLR373C;Name=VID22
XII	S-MART	transcript	871697	872728	.	+	.	seqedit=false;p_id=P6637;gene_id=YLR375W;tss_id=TSS1867;nbOverlaps=0;ID=YLR375W;Name=STP3
VI	S-MART	transcript	138204	139520	.	+	.	seqedit=false;p_id=P2681;gene_id=YFL002W-B;tss_id=TSS3917;nbOverlaps=0;ID=YFL002W-B;Name=YFL002W-B
XII	S-MART	transcript	871453	871842	.	-	.	seqedit=false;p_id=P3874;gene_id=YLR374C;tss_id=TSS3816;nbOverlaps=0;ID=YLR374C;Name=YLR374C
XII	S-MART	transcript	872826	873554	.	-	.	seqedit=false;p_id=P3522;gene_id=YLR376C;tss_id=TSS611;nbOverlaps=0;ID=YLR376C;Name=PSY3
XV	S-MART	transcript	918606	921062	.	-	.	seqedit=false;p_id=P677;gene_id=YOR322C;tss_id=TSS2436;nbOverlaps=0;ID=YOR322C;Name=LDB19
XII	S-MART	transcript	873746	874792	.	-	.	seqedit=false;p_id=P5474;gene_id=YLR377C;tss_id=TSS6622;nbOverlaps=0;ID=YLR377C;Name=FBP1
XII	S-MART	transcript	875736	877178	.	-	.	seqedit=false;p_id=P5329;gene_id=YLR378C;tss_id=TSS1036;nbOverlaps=0;ID=YLR378C;Name=SEC61
XII	S-MART	transcript	878282	879508	.	+	.	seqedit=false;p_id=P5585;gene_id=YLR380W;tss_id=TSS4910;nbOverlaps=0;ID=YLR380W;Name=CSR1
XII	S-MART	transcript	876922	877296	.	+	.	seqedit=false;p_id=P3459;gene_id=YLR379W;tss_id=TSS859;nbOverlaps=0;ID=YLR379W;Name=YLR379W
XII	S-MART	transcript	879723	881924	.	+	.	seqedit=false;p_id=P3378;gene_id=YLR381W;tss_id=TSS3288;nbOverlaps=0;ID=YLR381W;Name=CTF3
XII	S-MART	transcript	882067	884751	.	-	.	seqedit=false;p_id=P4051;gene_id=YLR382C;tss_id=TSS1883;nbOverlaps=0;ID=YLR382C;Name=NAM2
XV	S-MART	transcript	921535	922905	.	-	.	seqedit=false;p_id=P3260;gene_id=YOR323C;tss_id=TSS2020;nbOverlaps=0;ID=YOR323C;Name=PRO2
XVI	S-MART	transcript	893797	895764	.	-	.	seqedit=false;p_id=P6300;gene_id=YPR179C;tss_id=TSS6471;nbOverlaps=0;ID=YPR179C;Name=HDA3
XII	S-MART	transcript	885288	888632	.	+	.	seqedit=false;p_id=P5297;gene_id=YLR383W;tss_id=TSS2493;nbOverlaps=0;ID=YLR383W;Name=SMC6
XII	S-MART	transcript	888851	892900	.	-	.	seqedit=false;p_id=P4123;gene_id=YLR384C;tss_id=TSS5716;nbOverlaps=0;ID=YLR384C;Name=IKI3
XII	S-MART	transcript	892992	893390	.	-	.	seqedit=false;p_id=P871;gene_id=YLR385C;tss_id=TSS5274;nbOverlaps=0;ID=YLR385C;Name=SWC7
XII	S-MART	transcript	893628	896270	.	+	.	seqedit=false;p_id=P5984;gene_id=YLR386W;tss_id=TSS6509;nbOverlaps=0;ID=YLR386W;Name=VAC14
XII	S-MART	transcript	896374	897672	.	-	.	seqedit=false;p_id=P37;gene_id=YLR387C;tss_id=TSS2025;nbOverlaps=0;ID=YLR387C;Name=REH1
XII	S-MART	transcript	898651	898821	.	+	.	seqedit=false;p_id=P5848;gene_id=YLR388W;tss_id=TSS612;nbOverlaps=0;ID=YLR388W;Name=RPS29A
XV	S-MART	transcript	923232	925040	.	-	.	seqedit=false;p_id=P6243;gene_id=YOR324C;tss_id=TSS1296;nbOverlaps=0;ID=YOR324C;Name=FRT1
XII	S-MART	transcript	899577	902660	.	-	.	seqedit=false;p_id=P621;gene_id=YLR389C;tss_id=TSS4510;nbOverlaps=0;ID=YLR389C;Name=STE23
XII	S-MART	transcript	903066	903404	.	+	.	seqedit=false;p_id=P2539;gene_id=YLR390W;tss_id=TSS109;nbOverlaps=0;ID=YLR390W;Name=ECM19
XII	S-MART	transcript	903724	904440	.	+	.	seqedit=false;p_id=P847;gene_id=YLR390W-A;tss_id=TSS2799;nbOverlaps=0;ID=YLR390W-A;Name=CCW14
XII	S-MART	transcript	904749	906305	.	-	.	seqedit=false;p_id=P319;gene_id=YLR392C;tss_id=TSS5282;nbOverlaps=0;ID=YLR392C;Name=ART10
VI	S-MART	transcript	130334	130981	.	+	.	seqedit=false;p_id=P249;gene_id=YFL005W;tss_id=TSS236;nbOverlaps=0;ID=YFL005W;Name=SEC4
XII	S-MART	transcript	907079	907918	.	+	.	seqedit=false;p_id=P1660;gene_id=YLR393W;tss_id=TSS4380;nbOverlaps=0;ID=YLR393W;Name=ATP10
XII	S-MART	transcript	907950	909398	.	+	.	seqedit=false;p_id=P6025;gene_id=YLR394W;tss_id=TSS1252;nbOverlaps=0;ID=YLR394W;Name=CST9
XV	S-MART	transcript	925721	930445	.	+	.	seqedit=false;p_id=P6364;gene_id=YOR326W;tss_id=TSS4691;nbOverlaps=0;ID=YOR326W;Name=MYO2
XII	S-MART	transcript	909729	909965	.	-	.	seqedit=false;p_id=P2419;gene_id=YLR395C;tss_id=TSS4807;nbOverlaps=0;ID=YLR395C;Name=COX8
XII	S-MART	transcript	910235	912310	.	-	.	seqedit=false;p_id=P3161;gene_id=YLR396C;tss_id=TSS484;nbOverlaps=0;ID=YLR396C;Name=VPS33
XII	S-MART	transcript	912550	914892	.	-	.	seqedit=false;p_id=P2854;gene_id=YLR397C;tss_id=TSS4035;nbOverlaps=0;ID=YLR397C;Name=AFG2
XII	S-MART	transcript	915156	919019	.	-	.	seqedit=false;p_id=P5978;gene_id=YLR398C;tss_id=TSS3504;nbOverlaps=0;ID=YLR398C;Name=SKI2
VI	S-MART	transcript	123479	129910	.	+	.	seqedit=false;p_id=P536;gene_id=YFL007W;tss_id=TSS1263;nbOverlaps=0;ID=YFL007W;Name=BLM10
XII	S-MART	transcript	919536	921596	.	-	.	seqedit=false;p_id=P4030;gene_id=YLR399C;tss_id=TSS3896;nbOverlaps=0;ID=YLR399C;Name=BDF1
XII	S-MART	transcript	920869	920973	.	+	.	seqedit=false;p_id=P5606;gene_id=YLR399W-A;tss_id=TSS51;nbOverlaps=0;ID=YLR399W-A;Name=YLR399W-A
XV	S-MART	transcript	924577	925050	.	+	.	seqedit=false;p_id=P138;gene_id=YOR325W;tss_id=TSS1116;nbOverlaps=0;ID=YOR325W;Name=YOR325W
XII	S-MART	transcript	922442	924448	.	-	.	seqedit=false;p_id=P6185;gene_id=YLR401C;tss_id=TSS2094;nbOverlaps=0;ID=YLR401C;Name=DUS3
XII	S-MART	transcript	922063	922536	.	+	.	seqedit=false;p_id=P2315;gene_id=YLR400W;tss_id=TSS5080;nbOverlaps=0;ID=YLR400W;Name=YLR400W
XII	S-MART	transcript	925568	927619	.	+	.	seqedit=false;p_id=P112;gene_id=YLR403W;tss_id=TSS2322;nbOverlaps=0;ID=YLR403W;Name=SFP1
XI	S-MART	transcript	115500	117986	.	-	.	seqedit=false;p_id=P6233;gene_id=YKL176C;tss_id=TSS4821;nbOverlaps=0;ID=YKL176C;Name=LST4
XII	S-MART	transcript	924889	925080	.	+	.	seqedit=false;p_id=P6680;gene_id=YLR402W;tss_id=TSS899;nbOverlaps=0;ID=YLR402W;Name=YLR402W
VI	S-MART	transcript	119429	123106	.	+	.	seqedit=false;p_id=P4691;gene_id=YFL008W;tss_id=TSS1230;nbOverlaps=0;ID=YFL008W;Name=SMC1
XII	S-MART	transcript	928743	929600	.	+	.	seqedit=false;p_id=P3646;gene_id=YLR404W;tss_id=TSS1309;nbOverlaps=0;ID=YLR404W;Name=FLD1
XII	S-MART	transcript	929789	930892	.	+	.	seqedit=false;p_id=P4191;gene_id=YLR405W;tss_id=TSS3631;nbOverlaps=0;ID=YLR405W;Name=DUS4
XV	S-MART	transcript	930734	931081	.	-	.	seqedit=false;p_id=P2111;gene_id=YOR327C;tss_id=TSS3851;nbOverlaps=0;ID=YOR327C;Name=SNC2
XII	S-MART	transcript	931065	931755	.	-	.	seqedit=false;p_id=P917;gene_id=YLR406C;tss_id=TSS3348;nbOverlaps=0;ID=YLR406C;Name=RPL31B
XII	S-MART	exon	931065	931349	.	-	.	ID=YLR406C-exon1;Name=RPL31B-exon1;Parent=YLR406C
XII	S-MART	exon	931699	931755	.	-	.	ID=YLR406C-exon2;Name=RPL31B-exon2;Parent=YLR406C
XII	S-MART	transcript	932206	932355	.	-	.	seqedit=false;p_id=P4351;gene_id=YLR406C-A;tss_id=TSS1059;nbOverlaps=0;ID=YLR406C-A;Name=YLR406C-A
VI	S-MART	transcript	116145	118484	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:26:2942:5802#0--HWUSI-EAS1656_0009_FC:3:52:11243:10755#0--HWUSI-EAS1656_0009;p_id=P1947;gene_id=YFL009W;tss_id=TSS3644;nbOverlaps=58;ID=YFL009W;Name=CDC4
XII	S-MART	transcript	933885	934253	.	-	.	seqedit=false;p_id=P1203;gene_id=YLR408C;tss_id=TSS1483;nbOverlaps=0;ID=YLR408C;Name=BLS1
XII	S-MART	transcript	932967	933653	.	+	.	seqedit=false;p_id=P1978;gene_id=YLR407W;tss_id=TSS1216;nbOverlaps=0;ID=YLR407W;Name=YLR407W
XV	S-MART	transcript	931803	936497	.	+	.	seqedit=false;p_id=P2844;gene_id=YOR328W;tss_id=TSS3154;nbOverlaps=0;ID=YOR328W;Name=PDR10
XVI	S-MART	transcript	895961	897004	.	+	.	seqedit=false;p_id=P1584;gene_id=YPR180W;tss_id=TSS1177;nbOverlaps=0;ID=YPR180W;Name=AOS1
XII	S-MART	transcript	934414	937233	.	-	.	seqedit=false;p_id=P4841;gene_id=YLR409C;tss_id=TSS2328;nbOverlaps=0;ID=YLR409C;Name=UTP21
XII	S-MART	transcript	937541	940981	.	+	.	seqedit=false;p_id=P5512;gene_id=YLR410W;tss_id=TSS6933;nbOverlaps=0;ID=YLR410W;Name=VIP1
XII	S-MART	transcript	941483	942799	.	+	.	seqedit=false;p_id=P1227;gene_id=YLR410W-A;tss_id=TSS1545;nbOverlaps=0;ID=YLR410W-A;Name=YLR410W-A
XII	S-MART	transcript	941483	946796	.	+	.	seqedit=false;p_id=P5401;gene_id=YLR410W-B;tss_id=TSS1545;nbOverlaps=0;ID=YLR410W-B;Name=YLR410W-B
XII	S-MART	exon	941483	942775	.	+	.	ID=YLR410W-B-exon1;Name=YLR410W-B-exon1;Parent=YLR410W-B
XII	S-MART	exon	942777	946796	.	+	.	ID=YLR410W-B-exon2;Name=YLR410W-B-exon2;Parent=YLR410W-B
VI	S-MART	transcript	115108	115743	.	-	.	seqedit=false;p_id=P2694;gene_id=YFL010C;tss_id=TSS1431;nbOverlaps=0;ID=YFL010C;Name=WWM1
X	S-MART	transcript	307971	310637	.	-	.	seqedit=false;p_id=P6524;gene_id=YJL070C;tss_id=TSS4467;nbOverlaps=0;ID=YJL070C;Name=YJL070C
XV	S-MART	transcript	936731	939349	.	-	.	seqedit=false;p_id=P707;gene_id=YOR329C;tss_id=TSS5208;nbOverlaps=0;ID=YOR329C;Name=SCD5
XII	S-MART	transcript	947253	947978	.	+	.	seqedit=false;p_id=P170;gene_id=YLR411W;tss_id=TSS1999;nbOverlaps=0;ID=YLR411W;Name=CTR3
XII	S-MART	transcript	950267	950473	.	-	.	seqedit=false;p_id=P1279;gene_id=YLR412C-A;tss_id=TSS6309;nbOverlaps=0;ID=YLR412C-A;Name=YLR412C-A
XII	S-MART	transcript	948368	949192	.	+	.	seqedit=false;p_id=P4208;gene_id=YLR412W;tss_id=TSS3343;nbOverlaps=0;ID=YLR412W;Name=BER1
XII	S-MART	transcript	953353	954144	.	-	.	seqedit=false;p_id=P430;gene_id=YLR414C;tss_id=TSS6878;nbOverlaps=0;ID=YLR414C;Name=PUN1
Mito	S-MART	transcript	69289	69362	.	+	.	seqedit=false;gene_id=tR(ACG)Q2;tss_id=TSS1146;nbOverlaps=0;ID=tR(ACG)Q2;Name=tR(ACG)Q2
XII	S-MART	transcript	951156	953183	.	+	.	seqedit=false;p_id=P1557;gene_id=YLR413W;tss_id=TSS5982;nbOverlaps=0;ID=YLR413W;Name=YLR413W
XII	S-MART	transcript	955010	956710	.	+	.	seqedit=false;p_id=P6161;gene_id=YLR417W;tss_id=TSS2781;nbOverlaps=0;ID=YLR417W;Name=VPS36
XV	S-MART	transcript	939348	939557	.	+	.	seqedit=false;p_id=P5955;gene_id=YOR329W-A;tss_id=TSS1321;nbOverlaps=0;ID=YOR329W-A;Name=YOR329W-A
XII	S-MART	transcript	954259	954597	.	-	.	seqedit=false;p_id=P6433;gene_id=YLR415C;tss_id=TSS1436;nbOverlaps=0;ID=YLR415C;Name=YLR415C
XII	S-MART	transcript	954491	954889	.	-	.	seqedit=false;p_id=P3327;gene_id=YLR416C;tss_id=TSS1931;nbOverlaps=0;ID=YLR416C;Name=YLR416C
XII	S-MART	transcript	956914	958095	.	-	.	seqedit=false;p_id=P3940;gene_id=YLR418C;tss_id=TSS3347;nbOverlaps=0;ID=YLR418C;Name=CDC73
XII	S-MART	transcript	963785	964879	.	+	.	seqedit=false;p_id=P2877;gene_id=YLR420W;tss_id=TSS2165;nbOverlaps=0;ID=YLR420W;Name=URA4
VI	S-MART	transcript	112345	113985	.	+	.	seqedit=false;p_id=P5386;gene_id=YFL011W;tss_id=TSS3547;nbOverlaps=0;ID=YFL011W;Name=HXT10
XII	S-MART	transcript	958428	962735	.	+	.	seqedit=false;p_id=P753;gene_id=YLR419W;tss_id=TSS554;nbOverlaps=0;ID=YLR419W;Name=YLR419W
XII	S-MART	transcript	965090	965560	.	-	.	seqedit=false;p_id=P553;gene_id=YLR421C;tss_id=TSS6691;nbOverlaps=0;ID=YLR421C;Name=RPN13
XV	S-MART	transcript	939621	943385	.	-	.	seqedit=false;p_id=P6234;gene_id=YOR330C;tss_id=TSS3620;nbOverlaps=0;ID=YOR330C;Name=MIP1
XIV	S-MART	transcript	347766	348521	.	-	.	seqedit=false;p_id=P2046;gene_id=YNL151C;tss_id=TSS2844;nbOverlaps=0;ID=YNL151C;Name=RPC31
XII	S-MART	transcript	965897	971695	.	+	.	seqedit=false;p_id=P5411;gene_id=YLR422W;tss_id=TSS3272;nbOverlaps=0;ID=YLR422W;Name=YLR422W
XV	S-MART	transcript	943656	944357	.	+	.	seqedit=false;p_id=P5421;gene_id=YOR332W;tss_id=TSS6322;nbOverlaps=0;ID=YOR332W;Name=VMA4
III	S-MART	transcript	164111	166339	.	-	.	seqedit=false;p_id=P3451;gene_id=YCR026C;tss_id=TSS2866;nbOverlaps=0;ID=YCR026C;Name=NPP1
VII	S-MART	transcript	707610	708482	.	+	.	seqedit=false;p_id=P52;gene_id=YGR109W-A;tss_id=TSS5717;nbOverlaps=0;ID=YGR109W-A;Name=YGR109W-A
XV	S-MART	transcript	943565	944122	.	-	.	seqedit=false;p_id=P3457;gene_id=YOR331C;tss_id=TSS6048;nbOverlaps=0;ID=YOR331C;Name=YOR331C
XVI	S-MART	transcript	897361	899667	.	-	.	seqedit=false;p_id=P576;gene_id=YPR181C;tss_id=TSS6362;nbOverlaps=0;ID=YPR181C;Name=SEC23
XVI	S-MART	transcript	909733	911022	.	-	.	seqedit=false;p_id=P4247;gene_id=YPR186C;tss_id=TSS7017;nbOverlaps=0;ID=YPR186C;Name=PZF1
VII	S-MART	transcript	707610	712254	.	+	.	seqedit=false;p_id=P3977;gene_id=YGR109W-B;tss_id=TSS5717;nbOverlaps=0;ID=YGR109W-B;Name=YGR109W-B
VII	S-MART	exon	707610	708459	.	+	.	ID=YGR109W-B-exon1;Name=YGR109W-B-exon1;Parent=YGR109W-B
VII	S-MART	exon	708461	712254	.	+	.	ID=YGR109W-B-exon2;Name=YGR109W-B-exon2;Parent=YGR109W-B
XV	S-MART	transcript	944596	946008	.	+	.	seqedit=false;p_id=P6505;gene_id=YOR334W;tss_id=TSS63;nbOverlaps=0;ID=YOR334W;Name=MRS2
XV	S-MART	transcript	944541	944957	.	-	.	seqedit=false;p_id=P3686;gene_id=YOR333C;tss_id=TSS2818;nbOverlaps=0;ID=YOR333C;Name=YOR333C
XV	S-MART	transcript	946233	949109	.	-	.	seqedit=false;p_id=P5407;gene_id=YOR335C;tss_id=TSS3277;nbOverlaps=0;ID=YOR335C;Name=ALA1
III	S-MART	transcript	142701	142771	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:62:16181:12657#0--HWUSI-EAS1656_0009_FC:3:67:5215:9331#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)C;tss_id=TSS3752;nbOverlaps=128;ID=tG(GCC)C;Name=SUF16
VII	S-MART	transcript	713709	715046	.	+	.	seqedit=false;p_id=P4272;gene_id=YGR110W;tss_id=TSS3098;nbOverlaps=0;ID=YGR110W;Name=CLD1
XV	S-MART	transcript	946568	946648	.	+	.	seqedit=false;p_id=P859;gene_id=YOR335W-A;tss_id=TSS886;nbOverlaps=0;ID=YOR335W-A;Name=YOR335W-A
VII	S-MART	transcript	717358	718527	.	+	.	seqedit=false;p_id=P4613;gene_id=YGR112W;tss_id=TSS5355;nbOverlaps=0;ID=YGR112W;Name=SHY1
XV	S-MART	transcript	949773	953870	.	+	.	seqedit=false;p_id=P4459;gene_id=YOR336W;tss_id=TSS3336;nbOverlaps=0;ID=YOR336W;Name=KRE5
XVI	S-MART	transcript	900194	900454	.	+	.	seqedit=false;p_id=P214;gene_id=YPR182W;tss_id=TSS6500;nbOverlaps=0;ID=YPR182W;Name=SMX3
VII	S-MART	transcript	715828	717030	.	+	.	seqedit=false;p_id=P4152;gene_id=YGR111W;tss_id=TSS2051;nbOverlaps=0;ID=YGR111W;Name=YGR111W
XV	S-MART	transcript	954344	956623	.	+	.	seqedit=false;p_id=P6144;gene_id=YOR337W;tss_id=TSS5345;nbOverlaps=0;ID=YOR337W;Name=TEA1
VII	S-MART	transcript	718893	719924	.	+	.	seqedit=false;p_id=P5349;gene_id=YGR113W;tss_id=TSS5287;nbOverlaps=0;ID=YGR113W;Name=DAM1
XV	S-MART	transcript	958362	958832	.	-	.	seqedit=false;p_id=P6169;gene_id=YOR339C;tss_id=TSS6438;nbOverlaps=0;ID=YOR339C;Name=UBC11
VIII	S-MART	transcript	184066	184758	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:74:5084:21061#0--HWUSI-EAS1656_0009_FC:3:57:14873:15002#0--HWUSI-EAS1656_000;p_id=P1662;gene_id=YHR038W;tss_id=TSS3453;nbOverlaps=7;ID=YHR038W;Name=RRF1
VII	S-MART	transcript	720409	724764	.	+	.	seqedit=false;p_id=P6353;gene_id=YGR116W;tss_id=TSS5269;nbOverlaps=0;ID=YGR116W;Name=SPT6
XV	S-MART	transcript	956898	957989	.	+	.	seqedit=false;p_id=P3708;gene_id=YOR338W;tss_id=TSS2184;nbOverlaps=0;ID=YOR338W;Name=YOR338W
II	S-MART	transcript	197629	197699	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)B;tss_id=TSS5660;nbOverlaps=103;ID=tG(GCC)B;Name=tG(GCC)B
XIII	S-MART	transcript	162194	164176	.	-	.	seqedit=false;p_id=P570;gene_id=YML056C;tss_id=TSS218;nbOverlaps=0;ID=YML056C;Name=IMD4
XIII	S-MART	exon	162194	163308	.	-	.	ID=YML056C-exon1;Name=IMD4-exon1;Parent=YML056C
XIII	S-MART	exon	163717	164176	.	-	.	ID=YML056C-exon2;Name=IMD4-exon2;Parent=YML056C
XV	S-MART	transcript	959202	960182	.	-	.	seqedit=false;p_id=P1481;gene_id=YOR340C;tss_id=TSS6313;nbOverlaps=0;ID=YOR340C;Name=RPA43
XV	S-MART	transcript	185848	186723	.	-	.	seqedit=false;p_id=P4230;gene_id=YOL077C;tss_id=TSS5784;nbOverlaps=0;ID=YOL077C;Name=BRX1
IV	S-MART	transcript	1236558	1238004	.	+	.	seqedit=false;p_id=P762;gene_id=YDR381W;tss_id=TSS6573;nbOverlaps=0;ID=YDR381W;Name=YRA1
IV	S-MART	exon	1236558	1236842	.	+	.	ID=YDR381W-exon1;Name=YRA1-exon1;Parent=YDR381W
IV	S-MART	exon	1237609	1238004	.	+	.	ID=YDR381W-exon2;Name=YRA1-exon2;Parent=YDR381W
XV	S-MART	transcript	181682	185212	.	+	.	seqedit=false;p_id=P1260;gene_id=YOL078W;tss_id=TSS2052;nbOverlaps=0;ID=YOL078W;Name=AVO1
XV	S-MART	transcript	180558	181427	.	-	.	seqedit=false;p_id=P4444;gene_id=YOL080C;tss_id=TSS466;nbOverlaps=0;ID=YOL080C;Name=REX4
IV	S-MART	transcript	1239492	1239824	.	+	.	seqedit=false;p_id=P2791;gene_id=YDR382W;tss_id=TSS5892;nbOverlaps=0;ID=YDR382W;Name=RPP2B
XV	S-MART	transcript	960987	965981	.	+	.	seqedit=false;p_id=P1708;gene_id=YOR341W;tss_id=TSS5401;nbOverlaps=0;ID=YOR341W;Name=RPA190
IV	S-MART	transcript	1239960	1240676	.	-	.	seqedit=false;p_id=P427;gene_id=YDR383C;tss_id=TSS2176;nbOverlaps=0;ID=YDR383C;Name=NKP1
IV	S-MART	transcript	1241204	1242031	.	-	.	seqedit=false;p_id=P6075;gene_id=YDR384C;tss_id=TSS3869;nbOverlaps=0;ID=YDR384C;Name=ATO3
IV	S-MART	transcript	1243230	1245758	.	+	.	seqedit=false;p_id=P1754;gene_id=YDR385W;tss_id=TSS2495;nbOverlaps=0;ID=YDR385W;Name=EFT2
IV	S-MART	transcript	1246084	1247982	.	+	.	seqedit=false;p_id=P877;gene_id=YDR386W;tss_id=TSS5882;nbOverlaps=0;ID=YDR386W;Name=MUS81
IV	S-MART	transcript	1250186	1251634	.	+	.	seqedit=false;p_id=P6245;gene_id=YDR388W;tss_id=TSS3041;nbOverlaps=0;ID=YDR388W;Name=RVS167
IV	S-MART	transcript	1248154	1249821	.	-	.	seqedit=false;p_id=P6128;gene_id=YDR387C;tss_id=TSS6693;nbOverlaps=0;ID=YDR387C;Name=YDR387C
XV	S-MART	transcript	970578	971894	.	+	.	seqedit=false;p_id=P4209;gene_id=YOR343W-A;tss_id=TSS4033;nbOverlaps=0;ID=YOR343W-A;Name=YOR343W-A
IV	S-MART	transcript	1252537	1254501	.	+	.	seqedit=false;p_id=P3919;gene_id=YDR389W;tss_id=TSS1847;nbOverlaps=0;ID=YDR389W;Name=SAC7
IV	S-MART	transcript	1254937	1256847	.	-	.	seqedit=false;p_id=P6601;gene_id=YDR390C;tss_id=TSS4610;nbOverlaps=0;ID=YDR390C;Name=UBA2
IV	S-MART	transcript	1258696	1259709	.	+	.	seqedit=false;p_id=P6035;gene_id=YDR392W;tss_id=TSS5827;nbOverlaps=0;ID=YDR392W;Name=SPT3
IV	S-MART	transcript	1257358	1258056	.	-	.	seqedit=false;p_id=P617;gene_id=YDR391C;tss_id=TSS4756;nbOverlaps=0;ID=YDR391C;Name=YDR391C
XIII	S-MART	transcript	160023	160412	.	-	.	seqedit=false;p_id=P3440;gene_id=YML057C-A;tss_id=TSS1965;nbOverlaps=0;ID=YML057C-A;Name=YML057C-A
IV	S-MART	transcript	1259901	1261271	.	+	.	seqedit=false;p_id=P520;gene_id=YDR393W;tss_id=TSS1509;nbOverlaps=0;ID=YDR393W;Name=SHE9
IV	S-MART	transcript	1261681	1262967	.	+	.	seqedit=false;p_id=P5387;gene_id=YDR394W;tss_id=TSS2570;nbOverlaps=0;ID=YDR394W;Name=RPT3
XV	S-MART	transcript	966666	967625	.	-	.	seqedit=false;p_id=P3684;gene_id=YOR342C;tss_id=TSS381;nbOverlaps=0;ID=YOR342C;Name=YOR342C
IV	S-MART	transcript	1263324	1266158	.	+	.	seqedit=false;p_id=P5303;gene_id=YDR395W;tss_id=TSS327;nbOverlaps=0;ID=YDR395W;Name=SXM1
IV	S-MART	transcript	1266366	1266898	.	-	.	seqedit=false;p_id=P2272;gene_id=YDR397C;tss_id=TSS1590;nbOverlaps=0;ID=YDR397C;Name=NCB2
IV	S-MART	exon	1266366	1266769	.	-	.	ID=YDR397C-exon1;Name=NCB2-exon1;Parent=YDR397C
IV	S-MART	exon	1266862	1266898	.	-	.	ID=YDR397C-exon2;Name=NCB2-exon2;Parent=YDR397C
IV	S-MART	transcript	1266295	1266795	.	+	.	seqedit=false;p_id=P873;gene_id=YDR396W;tss_id=TSS2699;nbOverlaps=0;ID=YDR396W;Name=YDR396W
XV	S-MART	transcript	144204	145130	.	+	.	seqedit=false;p_id=P921;gene_id=YOL092W;tss_id=TSS4586;nbOverlaps=0;ID=YOL092W;Name=YOL092W
XV	S-MART	transcript	141584	142555	.	-	.	seqedit=false;p_id=P2192;gene_id=YOL094C;tss_id=TSS2513;nbOverlaps=0;ID=YOL094C;Name=RFC4
IV	S-MART	transcript	1267471	1269402	.	+	.	seqedit=false;p_id=P749;gene_id=YDR398W;tss_id=TSS5714;nbOverlaps=0;ID=YDR398W;Name=UTP5
XV	S-MART	transcript	968148	968474	.	-	.	seqedit=false;p_id=P603;gene_id=YOR343C;tss_id=TSS1860;nbOverlaps=0;ID=YOR343C;Name=YOR343C
IV	S-MART	transcript	1270068	1270733	.	+	.	seqedit=false;p_id=P5454;gene_id=YDR399W;tss_id=TSS4702;nbOverlaps=0;ID=YDR399W;Name=HPT1
IV	S-MART	transcript	83548	83618	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)D1;tss_id=TSS3648;nbOverlaps=102;ID=tG(GCC)D1;Name=tG(GCC)D1
IV	S-MART	transcript	1271063	1272085	.	+	.	seqedit=false;p_id=P2553;gene_id=YDR400W;tss_id=TSS1854;nbOverlaps=0;ID=YDR400W;Name=URH1
IV	S-MART	transcript	1272234	1273703	.	-	.	seqedit=false;p_id=P6027;gene_id=YDR402C;tss_id=TSS1437;nbOverlaps=0;ID=YDR402C;Name=DIT2
IV	S-MART	transcript	1272223	1272786	.	+	.	seqedit=false;p_id=P2090;gene_id=YDR401W;tss_id=TSS1430;nbOverlaps=0;ID=YDR401W;Name=YDR401W
IV	S-MART	transcript	1274602	1276212	.	+	.	seqedit=false;p_id=P102;gene_id=YDR403W;tss_id=TSS6066;nbOverlaps=0;ID=YDR403W;Name=DIT1
IV	S-MART	transcript	1276654	1277169	.	-	.	seqedit=false;p_id=P620;gene_id=YDR404C;tss_id=TSS4389;nbOverlaps=0;ID=YDR404C;Name=RPB7
IV	S-MART	transcript	1277646	1278437	.	+	.	seqedit=false;p_id=P3480;gene_id=YDR405W;tss_id=TSS779;nbOverlaps=0;ID=YDR405W;Name=MRP20
IV	S-MART	transcript	1279210	1283799	.	+	.	seqedit=false;p_id=P4883;gene_id=YDR406W;tss_id=TSS4235;nbOverlaps=0;ID=YDR406W;Name=PDR15
IV	S-MART	transcript	1283799	1284044	.	+	.	seqedit=false;p_id=P2029;gene_id=YDR406W-A;tss_id=TSS4306;nbOverlaps=0;ID=YDR406W-A;Name=YDR406W-A
IV	S-MART	transcript	1284069	1287938	.	-	.	seqedit=false;p_id=P1405;gene_id=YDR407C;tss_id=TSS1340;nbOverlaps=0;ID=YDR407C;Name=TRS120
VII	S-MART	transcript	728046	729671	.	-	.	seqedit=false;p_id=P1033;gene_id=YGR119C;tss_id=TSS1995;nbOverlaps=0;ID=YGR119C;Name=NUP57
IV	S-MART	transcript	1288215	1288859	.	-	.	seqedit=false;p_id=P2415;gene_id=YDR408C;tss_id=TSS4194;nbOverlaps=0;ID=YDR408C;Name=ADE8
IV	S-MART	transcript	1289406	1292120	.	+	.	seqedit=false;p_id=P648;gene_id=YDR409W;tss_id=TSS3558;nbOverlaps=0;ID=YDR409W;Name=SIZ1
IV	S-MART	transcript	1292372	1293091	.	-	.	seqedit=false;p_id=P3312;gene_id=YDR410C;tss_id=TSS2553;nbOverlaps=0;ID=YDR410C;Name=STE14
IV	S-MART	transcript	1293369	1294394	.	-	.	seqedit=false;p_id=P3165;gene_id=YDR411C;tss_id=TSS1562;nbOverlaps=0;ID=YDR411C;Name=DFM1
IV	S-MART	transcript	1294693	1295400	.	+	.	seqedit=false;p_id=P4954;gene_id=YDR412W;tss_id=TSS2409;nbOverlaps=0;ID=YDR412W;Name=RRP17
XIV	S-MART	transcript	636986	638854	.	+	.	seqedit=false;p_id=P5578;gene_id=YNR006W;tss_id=TSS3108;nbOverlaps=0;ID=YNR006W;Name=VPS27
IV	S-MART	transcript	1295598	1296686	.	-	.	seqedit=false;p_id=P90;gene_id=YDR414C;tss_id=TSS2896;nbOverlaps=0;ID=YDR414C;Name=ERD1
VII	S-MART	transcript	730033	730821	.	-	.	seqedit=false;p_id=P5583;gene_id=YGR120C;tss_id=TSS6015;nbOverlaps=0;ID=YGR120C;Name=COG2
IV	S-MART	transcript	1294836	1295411	.	-	.	seqedit=false;p_id=P1891;gene_id=YDR413C;tss_id=TSS6546;nbOverlaps=0;ID=YDR413C;Name=YDR413C
X	S-MART	transcript	298460	298876	.	-	.	seqedit=false;p_id=P4649;gene_id=YJL075C;tss_id=TSS3791;nbOverlaps=0;ID=YJL075C;Name=APQ13
IV	S-MART	transcript	1298432	1301011	.	+	.	seqedit=false;p_id=P2060;gene_id=YDR416W;tss_id=TSS319;nbOverlaps=0;ID=YDR416W;Name=SYF1
IV	S-MART	transcript	1297037	1298161	.	-	.	seqedit=false;p_id=P5275;gene_id=YDR415C;tss_id=TSS2108;nbOverlaps=0;ID=YDR415C;Name=YDR415C
IV	S-MART	transcript	1301616	1302113	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:8:15889:4910#0--HWUSI-EAS1656_0009_FC:3:20:18590:6802#0--HWUSI-EAS1656_0009_;p_id=P1313;gene_id=YDR418W;tss_id=TSS6047;nbOverlaps=597;ID=YDR418W;Name=RPL12B
IV	S-MART	transcript	1301555	1301926	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:106:8453:18260#0--HWUSI-EAS1656_0009_FC:3:1:4695:14907#0--HWUSI-EAS1656_0009;p_id=P3224;gene_id=YDR417C;tss_id=TSS807;nbOverlaps=82;ID=YDR417C;Name=YDR417C
IV	S-MART	transcript	1303174	1305072	.	+	.	seqedit=false;p_id=P3075;gene_id=YDR419W;tss_id=TSS5919;nbOverlaps=0;ID=YDR419W;Name=RAD30
VII	S-MART	transcript	731449	732927	.	-	.	seqedit=false;p_id=P2839;gene_id=YGR121C;tss_id=TSS3867;nbOverlaps=0;ID=YGR121C;Name=MEP1
IV	S-MART	transcript	1306267	1311675	.	+	.	seqedit=false;p_id=P1624;gene_id=YDR420W;tss_id=TSS4148;nbOverlaps=0;ID=YDR420W;Name=HKR1
IV	S-MART	transcript	1312040	1314892	.	+	.	seqedit=false;p_id=P2819;gene_id=YDR421W;tss_id=TSS4175;nbOverlaps=0;ID=YDR421W;Name=ARO80
XV	S-MART	transcript	977194	978069	.	-	.	seqedit=false;p_id=P1862;gene_id=YOR344C;tss_id=TSS1676;nbOverlaps=0;ID=YOR344C;Name=TYE7
IV	S-MART	transcript	1315326	1317773	.	-	.	seqedit=false;p_id=P5728;gene_id=YDR422C;tss_id=TSS965;nbOverlaps=0;ID=YDR422C;Name=SIP1
IV	S-MART	transcript	1318046	1319275	.	-	.	seqedit=false;p_id=P1411;gene_id=YDR423C;tss_id=TSS2003;nbOverlaps=0;ID=YDR423C;Name=CAD1
VIII	S-MART	transcript	187173	187679	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:17225:19201#0--HWUSI-EAS1656_0009_FC:3:95:2461:16896#0--HWUSI-EAS1656_000;p_id=P1422;gene_id=YHR039C-A;tss_id=TSS2735;nbOverlaps=206;ID=YHR039C-A;Name=VMA10
VIII	S-MART	exon	187173	187514	.	-	.	ID=YHR039C-A-exon1;Name=VMA10-exon1;Parent=YHR039C-A
VIII	S-MART	exon	187677	187679	.	-	.	ID=YHR039C-A-exon2;Name=VMA10-exon2;Parent=YHR039C-A
IV	S-MART	transcript	1319387	1319841	.	-	.	seqedit=false;p_id=P2827;gene_id=YDR424C;tss_id=TSS5409;nbOverlaps=0;ID=YDR424C;Name=DYN2
IV	S-MART	exon	1319387	1319617	.	-	.	ID=YDR424C-exon1;Name=DYN2-exon1;Parent=YDR424C
IV	S-MART	exon	1319698	1319720	.	-	.	ID=YDR424C-exon2;Name=DYN2-exon2;Parent=YDR424C
IV	S-MART	exon	1319817	1319841	.	-	.	ID=YDR424C-exon3;Name=DYN2-exon3;Parent=YDR424C
XV	S-MART	transcript	94856	96361	.	-	.	seqedit=false;p_id=P2116;gene_id=YOL119C;tss_id=TSS4083;nbOverlaps=0;ID=YOL119C;Name=MCH4
VII	S-MART	transcript	733412	733627	.	+	.	seqedit=false;p_id=P639;gene_id=YGR121W-A;tss_id=TSS1201;nbOverlaps=0;ID=YGR121W-A;Name=YGR121W-A
XV	S-MART	transcript	96608	96916	.	-	.	seqedit=false;p_id=P2833;gene_id=YOL118C;tss_id=TSS6474;nbOverlaps=0;ID=YOL118C;Name=YOL118C
XV	S-MART	transcript	93395	94402	.	-	.	seqedit=false;p_id=P6394;gene_id=YOL120C;tss_id=TSS6218;nbOverlaps=0;ID=YOL120C;Name=RPL18A
XV	S-MART	exon	93395	93843	.	-	.	ID=YOL120C-exon1;Name=RPL18A-exon1;Parent=YOL120C
XV	S-MART	exon	94291	94402	.	-	.	ID=YOL120C-exon2;Name=RPL18A-exon2;Parent=YOL120C
XVI	S-MART	transcript	422885	423892	.	-	.	seqedit=false;p_id=P510;gene_id=YPL069C;tss_id=TSS3779;nbOverlaps=0;ID=YPL069C;Name=BTS1
IV	S-MART	transcript	1320064	1321941	.	+	.	seqedit=false;p_id=P129;gene_id=YDR425W;tss_id=TSS5867;nbOverlaps=0;ID=YDR425W;Name=SNX41
IV	S-MART	transcript	992832	992902	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:108:13581:17035#0--HWUSI-EAS1656_0009_FC:3:67:5215:9331#0--HWUSI-EAS1656_000;gene_id=tG(GCC)D2;tss_id=TSS6260;nbOverlaps=128;ID=tG(GCC)D2;Name=tG(GCC)D2
IV	S-MART	transcript	1322205	1323386	.	+	.	seqedit=false;p_id=P4548;gene_id=YDR427W;tss_id=TSS2163;nbOverlaps=0;ID=YDR427W;Name=RPN9
IV	S-MART	transcript	1321629	1322006	.	-	.	seqedit=false;p_id=P125;gene_id=YDR426C;tss_id=TSS6319;nbOverlaps=0;ID=YDR426C;Name=YDR426C
IV	S-MART	transcript	1323454	1324239	.	-	.	seqedit=false;p_id=P124;gene_id=YDR428C;tss_id=TSS3966;nbOverlaps=0;ID=YDR428C;Name=BNA7
VII	S-MART	transcript	735630	735758	.	-	.	seqedit=false;p_id=P3651;gene_id=YGR122C-A;tss_id=TSS5081;nbOverlaps=0;ID=YGR122C-A;Name=YGR122C-A
IV	S-MART	transcript	1324477	1325301	.	-	.	seqedit=false;p_id=P4187;gene_id=YDR429C;tss_id=TSS3510;nbOverlaps=0;ID=YDR429C;Name=TIF35
IV	S-MART	transcript	1325501	1328470	.	-	.	seqedit=false;p_id=P3912;gene_id=YDR430C;tss_id=TSS4809;nbOverlaps=0;ID=YDR430C;Name=CYM1
XV	S-MART	transcript	981812	982162	.	-	.	seqedit=false;p_id=P8;gene_id=YOR345C;tss_id=TSS1069;nbOverlaps=0;ID=YOR345C;Name=YOR345C
IV	S-MART	transcript	1328783	1330027	.	+	.	seqedit=false;p_id=P1346;gene_id=YDR432W;tss_id=TSS5226;nbOverlaps=0;ID=YDR432W;Name=NPL3
IV	S-MART	transcript	1328390	1328701	.	+	.	seqedit=false;p_id=P1810;gene_id=YDR431W;tss_id=TSS6111;nbOverlaps=0;ID=YDR431W;Name=YDR431W
VIII	S-MART	transcript	423724	424473	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:85:8841:19696#0--HWUSI-EAS1656_0009_FC:3:22:5850:12885#0--HWUSI-EAS1656_0009;p_id=P5623;gene_id=YHR163W;tss_id=TSS5270;nbOverlaps=850;ID=YHR163W;Name=SOL3
IV	S-MART	transcript	1329600	1330040	.	+	.	seqedit=false;p_id=P2777;gene_id=YDR433W;tss_id=TSS786;nbOverlaps=0;ID=YDR433W;Name=YDR433W
VII	S-MART	transcript	736662	738203	.	-	.	seqedit=false;p_id=P2435;gene_id=YGR123C;tss_id=TSS4486;nbOverlaps=0;ID=YGR123C;Name=PPT1
II	S-MART	transcript	615203	615856	.	-	.	seqedit=false;p_id=P5572;gene_id=YBR197C;tss_id=TSS2985;nbOverlaps=0;ID=YBR197C;Name=YBR197C
II	S-MART	transcript	618909	620303	.	+	.	seqedit=false;p_id=P676;gene_id=YBR199W;tss_id=TSS1199;nbOverlaps=0;ID=YBR199W;Name=KTR4
II	S-MART	transcript	620872	622527	.	+	.	seqedit=false;p_id=P2738;gene_id=YBR200W;tss_id=TSS4754;nbOverlaps=0;ID=YBR200W;Name=BEM1
II	S-MART	transcript	622983	623147	.	+	.	seqedit=false;p_id=P1026;gene_id=YBR200W-A;tss_id=TSS2679;nbOverlaps=0;ID=YBR200W-A;Name=YBR200W-A
II	S-MART	transcript	624493	624696	.	-	.	seqedit=false;p_id=P6411;gene_id=YBR201C-A;tss_id=TSS1803;nbOverlaps=0;ID=YBR201C-A;Name=YBR201C-A
VII	S-MART	transcript	733935	735143	.	+	.	seqedit=false;p_id=P5346;gene_id=YGR122W;tss_id=TSS3396;nbOverlaps=0;ID=YGR122W;Name=YGR122W
II	S-MART	transcript	623576	624211	.	+	.	seqedit=false;p_id=P3308;gene_id=YBR201W;tss_id=TSS729;nbOverlaps=0;ID=YBR201W;Name=DER1
X	S-MART	transcript	295245	298814	.	+	.	seqedit=false;p_id=P3917;gene_id=YJL076W;tss_id=TSS389;nbOverlaps=0;ID=YJL076W;Name=NET1
II	S-MART	transcript	625772	628309	.	+	.	seqedit=false;p_id=P3903;gene_id=YBR202W;tss_id=TSS6328;nbOverlaps=0;ID=YBR202W;Name=MCM7
II	S-MART	transcript	629168	631942	.	+	.	seqedit=false;p_id=P1277;gene_id=YBR203W;tss_id=TSS5801;nbOverlaps=0;ID=YBR203W;Name=COS111
II	S-MART	transcript	632254	633381	.	-	.	seqedit=false;p_id=P665;gene_id=YBR204C;tss_id=TSS744;nbOverlaps=0;ID=YBR204C;Name=LDH1
II	S-MART	transcript	633622	634836	.	+	.	seqedit=false;p_id=P813;gene_id=YBR205W;tss_id=TSS2492;nbOverlaps=0;ID=YBR205W;Name=KTR3
II	S-MART	transcript	635146	636543	.	+	.	seqedit=false;p_id=P3528;gene_id=YBR207W;tss_id=TSS3086;nbOverlaps=0;ID=YBR207W;Name=FTH1
VII	S-MART	transcript	739944	741662	.	+	.	seqedit=false;p_id=P2137;gene_id=YGR124W;tss_id=TSS4704;nbOverlaps=0;ID=YGR124W;Name=ASN2
II	S-MART	transcript	634601	634924	.	+	.	seqedit=false;p_id=P1240;gene_id=YBR206W;tss_id=TSS3318;nbOverlaps=0;ID=YBR206W;Name=YBR206W
XIII	S-MART	transcript	514456	517287	.	+	.	seqedit=false;p_id=P952;gene_id=YMR124W;tss_id=TSS2702;nbOverlaps=0;ID=YMR124W;Name=YMR124W
II	S-MART	transcript	636703	642210	.	-	.	seqedit=false;p_id=P4763;gene_id=YBR208C;tss_id=TSS5458;nbOverlaps=0;ID=YBR208C;Name=DUR1,2
II	S-MART	transcript	645550	645978	.	+	.	seqedit=false;p_id=P165;gene_id=YBR210W;tss_id=TSS5429;nbOverlaps=0;ID=YBR210W;Name=ERV15
II	S-MART	transcript	642583	642900	.	+	.	seqedit=false;p_id=P3234;gene_id=YBR209W;tss_id=TSS2502;nbOverlaps=0;ID=YBR209W;Name=YBR209W
II	S-MART	transcript	646158	647132	.	-	.	seqedit=false;p_id=P4069;gene_id=YBR211C;tss_id=TSS4074;nbOverlaps=0;ID=YBR211C;Name=AME1
II	S-MART	transcript	647886	649904	.	+	.	seqedit=false;p_id=P5793;gene_id=YBR212W;tss_id=TSS5990;nbOverlaps=0;ID=YBR212W;Name=NGR1
VII	S-MART	transcript	747950	750091	.	-	.	seqedit=false;p_id=P1506;gene_id=YGR128C;tss_id=TSS2301;nbOverlaps=0;ID=YGR128C;Name=UTP8
II	S-MART	transcript	650368	651192	.	+	.	seqedit=false;p_id=P6304;gene_id=YBR213W;tss_id=TSS3854;nbOverlaps=0;ID=YBR213W;Name=MET8
II	S-MART	transcript	651415	652998	.	+	.	seqedit=false;p_id=P6060;gene_id=YBR214W;tss_id=TSS3893;nbOverlaps=0;ID=YBR214W;Name=SDS24
II	S-MART	transcript	653356	655317	.	+	.	seqedit=false;p_id=P3326;gene_id=YBR215W;tss_id=TSS4426;nbOverlaps=0;ID=YBR215W;Name=HPC2
II	S-MART	exon	653356	653368	.	+	.	ID=YBR215W-exon1;Name=HPC2-exon1;Parent=YBR215W
II	S-MART	exon	653453	655317	.	+	.	ID=YBR215W-exon2;Name=HPC2-exon2;Parent=YBR215W
VI	S-MART	transcript	162228	162298	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)F1;tss_id=TSS2685;nbOverlaps=107;ID=tG(GCC)F1;Name=SUF20
II	S-MART	transcript	655576	657600	.	-	.	seqedit=false;p_id=P3111;gene_id=YBR216C;tss_id=TSS1081;nbOverlaps=0;ID=YBR216C;Name=YBP1
VII	S-MART	transcript	742325	745435	.	+	.	seqedit=false;p_id=P3663;gene_id=YGR125W;tss_id=TSS4579;nbOverlaps=0;ID=YGR125W;Name=YGR125W
II	S-MART	transcript	657832	658392	.	+	.	seqedit=false;p_id=P4719;gene_id=YBR217W;tss_id=TSS1835;nbOverlaps=0;ID=YBR217W;Name=ATG12
II	S-MART	transcript	658707	662249	.	-	.	seqedit=false;p_id=P1774;gene_id=YBR218C;tss_id=TSS3667;nbOverlaps=0;ID=YBR218C;Name=PYC2
II	S-MART	transcript	665153	666253	.	-	.	seqedit=false;p_id=P5573;gene_id=YBR221C;tss_id=TSS2907;nbOverlaps=0;ID=YBR221C;Name=PDB1
II	S-MART	transcript	662499	663303	.	-	.	seqedit=false;p_id=P2649;gene_id=YBR219C;tss_id=TSS6589;nbOverlaps=0;ID=YBR219C;Name=YBR219C
II	S-MART	exon	662499	662581	.	-	.	ID=YBR219C-exon1;Name=YBR219C-exon1;Parent=YBR219C
II	S-MART	exon	663003	663303	.	-	.	ID=YBR219C-exon2;Name=YBR219C-exon2;Parent=YBR219C
II	S-MART	transcript	662995	664677	.	-	.	seqedit=false;p_id=P870;gene_id=YBR220C;tss_id=TSS4648;nbOverlaps=0;ID=YBR220C;Name=YBR220C
II	S-MART	transcript	666538	666642	.	+	.	seqedit=false;p_id=P4849;gene_id=YBR221W-A;tss_id=TSS819;nbOverlaps=0;ID=YBR221W-A;Name=YBR221W-A
II	S-MART	transcript	666720	668351	.	-	.	seqedit=false;p_id=P5453;gene_id=YBR222C;tss_id=TSS6570;nbOverlaps=0;ID=YBR222C;Name=PCS60
II	S-MART	transcript	668663	670297	.	-	.	seqedit=false;p_id=P376;gene_id=YBR223C;tss_id=TSS2098;nbOverlaps=0;ID=YBR223C;Name=TDP1
II	S-MART	transcript	668721	668840	.	+	.	seqedit=false;p_id=P3333;gene_id=YBR223W-A;tss_id=TSS5376;nbOverlaps=0;ID=YBR223W-A;Name=YBR223W-A
XVI	S-MART	transcript	911257	911800	.	+	.	seqedit=false;p_id=P538;gene_id=YPR187W;tss_id=TSS3051;nbOverlaps=0;ID=YPR187W;Name=RPO26
XVI	S-MART	exon	911257	911276	.	+	.	ID=YPR187W-exon1;Name=RPO26-exon1;Parent=YPR187W
XVI	S-MART	exon	911353	911800	.	+	.	ID=YPR187W-exon2;Name=RPO26-exon2;Parent=YPR187W
II	S-MART	transcript	673572	675134	.	-	.	seqedit=false;p_id=P3183;gene_id=YBR227C;tss_id=TSS5609;nbOverlaps=0;ID=YBR227C;Name=MCX1
II	S-MART	transcript	670125	670640	.	+	.	seqedit=false;p_id=P3898;gene_id=YBR224W;tss_id=TSS3618;nbOverlaps=0;ID=YBR224W;Name=YBR224W
II	S-MART	transcript	670627	673329	.	+	.	seqedit=false;p_id=P6635;gene_id=YBR225W;tss_id=TSS3265;nbOverlaps=0;ID=YBR225W;Name=YBR225W
II	S-MART	transcript	673155	673565	.	-	.	seqedit=false;p_id=P5785;gene_id=YBR226C;tss_id=TSS3997;nbOverlaps=0;ID=YBR226C;Name=YBR226C
II	S-MART	transcript	675313	676227	.	+	.	seqedit=false;p_id=P585;gene_id=YBR228W;tss_id=TSS3848;nbOverlaps=0;ID=YBR228W;Name=SLX1
II	S-MART	transcript	676357	679221	.	-	.	seqedit=false;p_id=P3141;gene_id=YBR229C;tss_id=TSS3634;nbOverlaps=0;ID=YBR229C;Name=ROT2
II	S-MART	transcript	679549	680050	.	-	.	seqedit=false;p_id=P5917;gene_id=YBR230C;tss_id=TSS4233;nbOverlaps=0;ID=YBR230C;Name=OM14
II	S-MART	exon	679549	679942	.	-	.	ID=YBR230C-exon1;Name=OM14-exon1;Parent=YBR230C
II	S-MART	exon	680040	680050	.	-	.	ID=YBR230C-exon2;Name=OM14-exon2;Parent=YBR230C
VII	S-MART	transcript	750400	751047	.	+	.	seqedit=false;p_id=P4704;gene_id=YGR129W;tss_id=TSS3129;nbOverlaps=0;ID=YGR129W;Name=SYF2
II	S-MART	transcript	680362	680562	.	+	.	seqedit=false;p_id=P6149;gene_id=YBR230W-A;tss_id=TSS637;nbOverlaps=0;ID=YBR230W-A;Name=YBR230W-A
II	S-MART	transcript	682179	683090	.	-	.	seqedit=false;p_id=P305;gene_id=YBR231C;tss_id=TSS897;nbOverlaps=0;ID=YBR231C;Name=SWC5
II	S-MART	transcript	683428	684669	.	+	.	seqedit=false;p_id=P1178;gene_id=YBR233W;tss_id=TSS1343;nbOverlaps=0;ID=YBR233W;Name=PBP2
II	S-MART	transcript	683373	683732	.	-	.	seqedit=false;p_id=P1960;gene_id=YBR232C;tss_id=TSS4316;nbOverlaps=0;ID=YBR232C;Name=YBR232C
VII	S-MART	transcript	754726	755250	.	+	.	seqedit=false;p_id=P3693;gene_id=YGR131W;tss_id=TSS3358;nbOverlaps=0;ID=YGR131W;Name=FHN1
II	S-MART	transcript	684977	685261	.	+	.	seqedit=false;p_id=P428;gene_id=YBR233W-A;tss_id=TSS3483;nbOverlaps=0;ID=YBR233W-A;Name=DAD3
II	S-MART	transcript	685438	686592	.	-	.	seqedit=false;p_id=P1882;gene_id=YBR234C;tss_id=TSS353;nbOverlaps=0;ID=YBR234C;Name=ARC40
II	S-MART	transcript	690383	691693	.	-	.	seqedit=false;p_id=P6038;gene_id=YBR236C;tss_id=TSS2615;nbOverlaps=0;ID=YBR236C;Name=ABD1
II	S-MART	transcript	686901	690263	.	+	.	seqedit=false;p_id=P3996;gene_id=YBR235W;tss_id=TSS646;nbOverlaps=0;ID=YBR235W;Name=YBR235W
II	S-MART	transcript	691969	694518	.	+	.	seqedit=false;p_id=P6023;gene_id=YBR237W;tss_id=TSS6547;nbOverlaps=0;ID=YBR237W;Name=PRP5
II	S-MART	transcript	698354	699943	.	-	.	seqedit=false;p_id=P3628;gene_id=YBR239C;tss_id=TSS2372;nbOverlaps=0;ID=YBR239C;Name=ERT1
XIII	S-MART	transcript	133475	135229	.	+	.	seqedit=false;p_id=P5502;gene_id=YML070W;tss_id=TSS6121;nbOverlaps=0;ID=YML070W;Name=DAK1
II	S-MART	transcript	695107	697302	.	-	.	seqedit=false;p_id=P6621;gene_id=YBR238C;tss_id=TSS1029;nbOverlaps=0;ID=YBR238C;Name=YBR238C
II	S-MART	transcript	700490	701842	.	-	.	seqedit=false;p_id=P5872;gene_id=YBR240C;tss_id=TSS4294;nbOverlaps=0;ID=YBR240C;Name=THI2
II	S-MART	transcript	705447	706793	.	-	.	seqedit=false;p_id=P469;gene_id=YBR243C;tss_id=TSS1821;nbOverlaps=0;ID=YBR243C;Name=ALG7
II	S-MART	transcript	702589	704055	.	-	.	seqedit=false;p_id=P3501;gene_id=YBR241C;tss_id=TSS1237;nbOverlaps=0;ID=YBR241C;Name=YBR241C
II	S-MART	transcript	704670	705386	.	+	.	seqedit=false;p_id=P3964;gene_id=YBR242W;tss_id=TSS943;nbOverlaps=0;ID=YBR242W;Name=YBR242W
II	S-MART	transcript	707528	708016	.	+	.	seqedit=false;p_id=P848;gene_id=YBR244W;tss_id=TSS2035;nbOverlaps=0;ID=YBR244W;Name=GPX2
VII	S-MART	transcript	755589	756452	.	-	.	seqedit=false;p_id=P4794;gene_id=YGR132C;tss_id=TSS96;nbOverlaps=0;ID=YGR132C;Name=PHB1
II	S-MART	transcript	708150	711539	.	-	.	seqedit=false;p_id=P2744;gene_id=YBR245C;tss_id=TSS1652;nbOverlaps=0;ID=YBR245C;Name=ISW1
II	S-MART	transcript	711591	712754	.	+	.	seqedit=false;p_id=P590;gene_id=YBR246W;tss_id=TSS2651;nbOverlaps=0;ID=YBR246W;Name=RRT2
II	S-MART	transcript	713004	714455	.	-	.	seqedit=false;p_id=P2848;gene_id=YBR247C;tss_id=TSS3119;nbOverlaps=0;ID=YBR247C;Name=ENP1
II	S-MART	transcript	714807	716465	.	-	.	seqedit=false;p_id=P3508;gene_id=YBR248C;tss_id=TSS2576;nbOverlaps=0;ID=YBR248C;Name=HIS7
VII	S-MART	transcript	756896	757447	.	+	.	seqedit=false;p_id=P3796;gene_id=YGR133W;tss_id=TSS1682;nbOverlaps=0;ID=YGR133W;Name=PEX4
VII	S-MART	transcript	757770	761138	.	+	.	seqedit=false;p_id=P3945;gene_id=YGR134W;tss_id=TSS4042;nbOverlaps=0;ID=YGR134W;Name=CAF130
XII	S-MART	transcript	644404	644973	.	-	.	seqedit=false;p_id=P566;gene_id=YLR254C;tss_id=TSS2538;nbOverlaps=0;ID=YLR254C;Name=NDL1
VII	S-MART	transcript	763762	765606	.	-	.	seqedit=false;p_id=P471;gene_id=YGR138C;tss_id=TSS2158;nbOverlaps=0;ID=YGR138C;Name=TPO2
XIV	S-MART	transcript	346313	347542	.	+	.	seqedit=false;p_id=P5645;gene_id=YNL152W;tss_id=TSS1261;nbOverlaps=0;ID=YNL152W;Name=INN1
VII	S-MART	transcript	762888	763262	.	+	.	seqedit=false;p_id=P5190;gene_id=YGR137W;tss_id=TSS5061;nbOverlaps=0;ID=YGR137W;Name=YGR137W
X	S-MART	transcript	294047	294145	.	+	.	seqedit=false;p_id=P185;gene_id=YJL077W-B;tss_id=TSS419;nbOverlaps=0;ID=YJL077W-B;Name=YJL077W-B
VII	S-MART	transcript	767429	770299	.	+	.	seqedit=false;p_id=P6543;gene_id=YGR140W;tss_id=TSS430;nbOverlaps=0;ID=YGR140W;Name=CBF2
XIII	S-MART	transcript	520761	521789	.	-	.	seqedit=false;p_id=P3220;gene_id=YMR126C;tss_id=TSS4366;nbOverlaps=0;ID=YMR126C;Name=DLT1
XII	S-MART	transcript	641957	642262	.	+	.	seqedit=false;p_id=P973;gene_id=YLR252W;tss_id=TSS3888;nbOverlaps=0;ID=YLR252W;Name=YLR252W
VIII	S-MART	transcript	189131	189864	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:104:4895:11789#0--HWUSI-EAS1656_0009_FC:3:82:13511:20881#0--HWUSI-EAS1656_00;p_id=P908;gene_id=YHR041C;tss_id=TSS3297;nbOverlaps=110;ID=YHR041C;Name=SRB2
VIII	S-MART	exon	189131	189749	.	-	.	ID=YHR041C-exon1;Name=SRB2-exon1;Parent=YHR041C
VIII	S-MART	exon	189851	189864	.	-	.	ID=YHR041C-exon2;Name=SRB2-exon2;Parent=YHR041C
VII	S-MART	transcript	765726	766064	.	+	.	seqedit=false;p_id=P1824;gene_id=YGR139W;tss_id=TSS979;nbOverlaps=0;ID=YGR139W;Name=YGR139W
VII	S-MART	transcript	845649	845719	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)G1;tss_id=TSS1761;nbOverlaps=103;ID=tG(GCC)G1;Name=tG(GCC)G1
XIII	S-MART	transcript	111002	111550	.	+	.	seqedit=false;p_id=P588;gene_id=YML078W;tss_id=TSS5623;nbOverlaps=0;ID=YML078W;Name=CPR3
XIII	S-MART	transcript	108806	110077	.	+	.	seqedit=false;p_id=P6464;gene_id=YML080W;tss_id=TSS6802;nbOverlaps=0;ID=YML080W;Name=DUS1
XIV	S-MART	transcript	345669	346058	.	-	.	seqedit=false;p_id=P2049;gene_id=YNL153C;tss_id=TSS3591;nbOverlaps=0;ID=YNL153C;Name=GIM3
VII	S-MART	transcript	775193	777508	.	+	.	seqedit=false;p_id=P6064;gene_id=YGR143W;tss_id=TSS5515;nbOverlaps=0;ID=YGR143W;Name=SKN1
X	S-MART	transcript	291336	293981	.	-	.	seqedit=false;p_id=P6470;gene_id=YJL078C;tss_id=TSS1943;nbOverlaps=0;ID=YJL078C;Name=PRY3
XVI	S-MART	transcript	533642	534703	.	-	.	seqedit=false;p_id=P770;gene_id=YPL011C;tss_id=TSS4416;nbOverlaps=0;ID=YPL011C;Name=TAF3
XVI	S-MART	transcript	529723	533409	.	+	.	seqedit=false;p_id=P5206;gene_id=YPL012W;tss_id=TSS5639;nbOverlaps=0;ID=YPL012W;Name=RRP12
XVI	S-MART	transcript	528985	529350	.	-	.	seqedit=false;p_id=P1946;gene_id=YPL013C;tss_id=TSS5186;nbOverlaps=0;ID=YPL013C;Name=MRPS16
VII	S-MART	transcript	780399	781379	.	+	.	seqedit=false;p_id=P6526;gene_id=YGR144W;tss_id=TSS6030;nbOverlaps=0;ID=YGR144W;Name=THI4
XVI	S-MART	transcript	525810	526883	.	-	.	seqedit=false;p_id=P2062;gene_id=YPL015C;tss_id=TSS1620;nbOverlaps=0;ID=YPL015C;Name=HST2
XVI	S-MART	transcript	527547	528692	.	+	.	seqedit=false;p_id=P3399;gene_id=YPL014W;tss_id=TSS1139;nbOverlaps=0;ID=YPL014W;Name=YPL014W
XVI	S-MART	transcript	521014	524958	.	+	.	seqedit=false;p_id=P6515;gene_id=YPL016W;tss_id=TSS4598;nbOverlaps=0;ID=YPL016W;Name=SWI1
XVI	S-MART	transcript	518734	520233	.	-	.	seqedit=false;p_id=P4597;gene_id=YPL017C;tss_id=TSS1751;nbOverlaps=0;ID=YPL017C;Name=IRC15
XVI	S-MART	transcript	517651	518760	.	+	.	seqedit=false;p_id=P1718;gene_id=YPL018W;tss_id=TSS5786;nbOverlaps=0;ID=YPL018W;Name=CTF19
XVI	S-MART	transcript	514511	517018	.	-	.	seqedit=false;p_id=P239;gene_id=YPL019C;tss_id=TSS5794;nbOverlaps=0;ID=YPL019C;Name=VTC3
VII	S-MART	transcript	781767	783890	.	+	.	seqedit=false;p_id=P974;gene_id=YGR145W;tss_id=TSS5883;nbOverlaps=0;ID=YGR145W;Name=ENP2
XVI	S-MART	transcript	512313	514178	.	-	.	seqedit=false;p_id=P1289;gene_id=YPL020C;tss_id=TSS2264;nbOverlaps=0;ID=YPL020C;Name=ULP1
XVI	S-MART	transcript	511101	511664	.	+	.	seqedit=false;p_id=P1091;gene_id=YPL021W;tss_id=TSS2663;nbOverlaps=0;ID=YPL021W;Name=ECM23
XVI	S-MART	transcript	506697	509999	.	+	.	seqedit=false;p_id=P6317;gene_id=YPL022W;tss_id=TSS685;nbOverlaps=0;ID=YPL022W;Name=RAD1
VII	S-MART	transcript	930953	931023	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)G2;tss_id=TSS605;nbOverlaps=105;ID=tG(GCC)G2;Name=tG(GCC)G2
XVI	S-MART	transcript	504339	506312	.	-	.	seqedit=false;p_id=P6163;gene_id=YPL023C;tss_id=TSS5967;nbOverlaps=0;ID=YPL023C;Name=MET12
XVI	S-MART	transcript	503517	504242	.	+	.	seqedit=false;p_id=P1687;gene_id=YPL024W;tss_id=TSS1239;nbOverlaps=0;ID=YPL024W;Name=RMI1
XVI	S-MART	transcript	500675	502183	.	-	.	seqedit=false;p_id=P1369;gene_id=YPL026C;tss_id=TSS4545;nbOverlaps=0;ID=YPL026C;Name=SKS1
VII	S-MART	transcript	784223	784858	.	-	.	seqedit=false;p_id=P2585;gene_id=YGR146C;tss_id=TSS5560;nbOverlaps=0;ID=YGR146C;Name=ECL1
XVI	S-MART	transcript	502473	503030	.	-	.	seqedit=false;p_id=P1535;gene_id=YPL025C;tss_id=TSS3476;nbOverlaps=0;ID=YPL025C;Name=YPL025C
XVI	S-MART	transcript	499665	500402	.	+	.	seqedit=false;p_id=P1209;gene_id=YPL027W;tss_id=TSS4055;nbOverlaps=0;ID=YPL027W;Name=SMA1
XVI	S-MART	transcript	498096	499292	.	+	.	seqedit=false;p_id=P6618;gene_id=YPL028W;tss_id=TSS1776;nbOverlaps=0;ID=YPL028W;Name=ERG10
XVI	S-MART	transcript	495506	497719	.	+	.	seqedit=false;p_id=P3462;gene_id=YPL029W;tss_id=TSS6820;nbOverlaps=0;ID=YPL029W;Name=SUV3
XVI	S-MART	transcript	493543	495246	.	+	.	seqedit=false;p_id=P3536;gene_id=YPL030W;tss_id=TSS1706;nbOverlaps=0;ID=YPL030W;Name=TRM44
XVI	S-MART	transcript	492018	493037	.	-	.	seqedit=false;p_id=P609;gene_id=YPL031C;tss_id=TSS3022;nbOverlaps=0;ID=YPL031C;Name=PHO85
XVI	S-MART	exon	492018	492918	.	-	.	ID=YPL031C-exon1;Name=PHO85-exon1;Parent=YPL031C
XVI	S-MART	exon	493021	493037	.	-	.	ID=YPL031C-exon2;Name=PHO85-exon2;Parent=YPL031C
VII	S-MART	transcript	785276	785437	.	-	.	seqedit=false;p_id=P5075;gene_id=YGR146C-A;tss_id=TSS5581;nbOverlaps=0;ID=YGR146C-A;Name=YGR146C-A
XVI	S-MART	transcript	488887	491364	.	-	.	seqedit=false;p_id=P2720;gene_id=YPL032C;tss_id=TSS5965;nbOverlaps=0;ID=YPL032C;Name=SVL3
XVI	S-MART	transcript	911988	912479	.	-	.	seqedit=false;p_id=P414;gene_id=YPR188C;tss_id=TSS3842;nbOverlaps=0;ID=YPR188C;Name=MLC2
XVI	S-MART	transcript	487362	488207	.	-	.	seqedit=false;p_id=P1500;gene_id=YPL033C;tss_id=TSS3187;nbOverlaps=0;ID=YPL033C;Name=SRL4
XVI	S-MART	transcript	482843	485686	.	+	.	seqedit=false;p_id=P178;gene_id=YPL036W;tss_id=TSS5625;nbOverlaps=0;ID=YPL036W;Name=PMA2
XVI	S-MART	transcript	486712	487209	.	+	.	seqedit=false;p_id=P1542;gene_id=YPL034W;tss_id=TSS4497;nbOverlaps=0;ID=YPL034W;Name=YPL034W
VII	S-MART	transcript	786054	786920	.	-	.	seqedit=false;p_id=P3805;gene_id=YGR147C;tss_id=TSS5347;nbOverlaps=0;ID=YGR147C;Name=NAT2
XVI	S-MART	transcript	486564	486911	.	-	.	seqedit=false;p_id=P4140;gene_id=YPL035C;tss_id=TSS6064;nbOverlaps=0;ID=YPL035C;Name=YPL035C
XVI	S-MART	transcript	481428	481901	.	-	.	seqedit=false;p_id=P1672;gene_id=YPL037C;tss_id=TSS315;nbOverlaps=0;ID=YPL037C;Name=EGD1
XVI	S-MART	transcript	480535	481068	.	+	.	seqedit=false;p_id=P5599;gene_id=YPL038W;tss_id=TSS3134;nbOverlaps=0;ID=YPL038W;Name=MET31
XVI	S-MART	transcript	480182	480373	.	+	.	seqedit=false;p_id=P751;gene_id=YPL038W-A;tss_id=TSS3303;nbOverlaps=0;ID=YPL038W-A;Name=YPL038W-A
XVI	S-MART	transcript	475993	479001	.	-	.	seqedit=false;p_id=P2524;gene_id=YPL040C;tss_id=TSS6082;nbOverlaps=0;ID=YPL040C;Name=ISM1
XVI	S-MART	transcript	479225	480175	.	+	.	seqedit=false;p_id=P1489;gene_id=YPL039W;tss_id=TSS6355;nbOverlaps=0;ID=YPL039W;Name=YPL039W
VII	S-MART	transcript	787312	787779	.	-	.	seqedit=false;p_id=P3404;gene_id=YGR148C;tss_id=TSS2548;nbOverlaps=0;ID=YGR148C;Name=RPL24B
XVI	S-MART	transcript	473040	474707	.	-	.	seqedit=false;p_id=P3411;gene_id=YPL042C;tss_id=TSS1880;nbOverlaps=0;ID=YPL042C;Name=SSN3
XVI	S-MART	transcript	475118	475741	.	-	.	seqedit=false;p_id=P34;gene_id=YPL041C;tss_id=TSS4329;nbOverlaps=0;ID=YPL041C;Name=YPL041C
XII	S-MART	transcript	646415	650923	.	+	.	seqedit=false;p_id=P1885;gene_id=YLR256W;tss_id=TSS2394;nbOverlaps=0;ID=YLR256W;Name=HAP1
XVI	S-MART	transcript	467260	469656	.	+	.	seqedit=false;p_id=P523;gene_id=YPL045W;tss_id=TSS1336;nbOverlaps=0;ID=YPL045W;Name=VPS16
XVI	S-MART	transcript	469926	470474	.	-	.	seqedit=false;p_id=P5795;gene_id=YPL044C;tss_id=TSS725;nbOverlaps=0;ID=YPL044C;Name=YPL044C
XVI	S-MART	transcript	466644	466943	.	-	.	seqedit=false;p_id=P1833;gene_id=YPL046C;tss_id=TSS4679;nbOverlaps=0;ID=YPL046C;Name=ELC1
XVI	S-MART	transcript	465962	466261	.	+	.	seqedit=false;p_id=P2099;gene_id=YPL047W;tss_id=TSS4152;nbOverlaps=0;ID=YPL047W;Name=SGF11
XVI	S-MART	transcript	464401	465648	.	+	.	seqedit=false;p_id=P5901;gene_id=YPL048W;tss_id=TSS2813;nbOverlaps=0;ID=YPL048W;Name=CAM1
XVI	S-MART	transcript	462481	463839	.	-	.	seqedit=false;p_id=P6153;gene_id=YPL049C;tss_id=TSS456;nbOverlaps=0;ID=YPL049C;Name=DIG1
X	S-MART	transcript	396726	396796	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)J1;tss_id=TSS6089;nbOverlaps=105;ID=tG(GCC)J1;Name=tG(GCC)J1
XVI	S-MART	transcript	460779	461966	.	-	.	seqedit=false;p_id=P4412;gene_id=YPL050C;tss_id=TSS331;nbOverlaps=0;ID=YPL050C;Name=MNN9
XVI	S-MART	transcript	459963	460559	.	+	.	seqedit=false;p_id=P4029;gene_id=YPL051W;tss_id=TSS3121;nbOverlaps=0;ID=YPL051W;Name=ARL3
XVI	S-MART	transcript	458799	459678	.	+	.	seqedit=false;p_id=P3489;gene_id=YPL052W;tss_id=TSS1379;nbOverlaps=0;ID=YPL052W;Name=OAZ1
XVI	S-MART	exon	458799	459005	.	+	.	ID=YPL052W-exon1;Name=OAZ1-exon1;Parent=YPL052W
XVI	S-MART	exon	459007	459678	.	+	.	ID=YPL052W-exon2;Name=OAZ1-exon2;Parent=YPL052W
XVI	S-MART	transcript	457118	458458	.	-	.	seqedit=false;p_id=P1318;gene_id=YPL053C;tss_id=TSS3573;nbOverlaps=0;ID=YPL053C;Name=KTR6
XVI	S-MART	transcript	455759	456664	.	+	.	seqedit=false;p_id=P89;gene_id=YPL054W;tss_id=TSS2606;nbOverlaps=0;ID=YPL054W;Name=LEE1
XVI	S-MART	transcript	453992	454990	.	-	.	seqedit=false;p_id=P2263;gene_id=YPL055C;tss_id=TSS5159;nbOverlaps=0;ID=YPL055C;Name=LGE1
XVI	S-MART	transcript	453430	453735	.	-	.	seqedit=false;p_id=P1625;gene_id=YPL056C;tss_id=TSS7053;nbOverlaps=0;ID=YPL056C;Name=LCL1
VII	S-MART	transcript	794674	795492	.	-	.	seqedit=false;p_id=P3408;gene_id=YGR152C;tss_id=TSS3518;nbOverlaps=0;ID=YGR152C;Name=RSR1
XVI	S-MART	transcript	451909	453057	.	-	.	seqedit=false;p_id=P1460;gene_id=YPL057C;tss_id=TSS2199;nbOverlaps=0;ID=YPL057C;Name=SUR1
XVI	S-MART	transcript	445842	450377	.	-	.	seqedit=false;p_id=P922;gene_id=YPL058C;tss_id=TSS4443;nbOverlaps=0;ID=YPL058C;Name=PDR12
XVI	S-MART	transcript	444579	445031	.	+	.	seqedit=false;p_id=P3201;gene_id=YPL059W;tss_id=TSS4524;nbOverlaps=0;ID=YPL059W;Name=GRX5
XVI	S-MART	transcript	912664	916962	.	+	.	seqedit=false;p_id=P4731;gene_id=YPR189W;tss_id=TSS6411;nbOverlaps=0;ID=YPR189W;Name=SKI3
XVI	S-MART	transcript	439428	442742	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:3:19234:19292#0--HWUSI-EAS1656_0009_FC:3:16:8630:9221#0--HWUSI-EAS1656_0009_;gene_id=YPL060C-A;tss_id=TSS5896;nbOverlaps=54;ID=YPL060C-A;Name=YPL060C-A
XVI	S-MART	transcript	434523	435764	.	+	.	seqedit=false;p_id=P561;gene_id=YPL060W;tss_id=TSS7030;nbOverlaps=0;ID=YPL060W;Name=MFM1
XVI	S-MART	transcript	432588	434090	.	+	.	seqedit=false;p_id=P4323;gene_id=YPL061W;tss_id=TSS1407;nbOverlaps=0;ID=YPL061W;Name=ALD6
VII	S-MART	transcript	794655	794990	.	-	.	seqedit=false;p_id=P2169;gene_id=YGR151C;tss_id=TSS5103;nbOverlaps=0;ID=YGR151C;Name=YGR151C
XVI	S-MART	transcript	429939	431369	.	+	.	seqedit=false;p_id=P4417;gene_id=YPL063W;tss_id=TSS3612;nbOverlaps=0;ID=YPL063W;Name=TIM50
XVI	S-MART	transcript	431895	432299	.	+	.	seqedit=false;p_id=P2440;gene_id=YPL062W;tss_id=TSS3149;nbOverlaps=0;ID=YPL062W;Name=YPL062W
XVI	S-MART	transcript	428711	429616	.	-	.	seqedit=false;p_id=P2499;gene_id=YPL064C;tss_id=TSS6517;nbOverlaps=0;ID=YPL064C;Name=CWC27
XVI	S-MART	transcript	427927	428655	.	+	.	seqedit=false;p_id=P4348;gene_id=YPL065W;tss_id=TSS3824;nbOverlaps=0;ID=YPL065W;Name=VPS28
XVI	S-MART	transcript	946856	947338	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:52:8694:17363#0--HWUSI-EAS1656_0009_FC:3:3:10532:2855#0--HWUSI-EAS1656_0009_;p_id=P6072;gene_id=YPR204C-A;tss_id=TSS5621;nbOverlaps=76;ID=YPR204C-A;Name=YPR204C-A
XVI	S-MART	transcript	426233	427672	.	+	.	seqedit=false;p_id=P6301;gene_id=YPL066W;tss_id=TSS2641;nbOverlaps=0;ID=YPL066W;Name=YPL066W
VII	S-MART	transcript	796798	797868	.	-	.	seqedit=false;p_id=P700;gene_id=YGR154C;tss_id=TSS2104;nbOverlaps=0;ID=YGR154C;Name=GTO1
XIII	S-MART	transcript	178426	179637	.	+	.	seqedit=false;p_id=P5230;gene_id=YML048W;tss_id=TSS4410;nbOverlaps=0;ID=YML048W;Name=GSF2
XIII	S-MART	transcript	174220	178305	.	-	.	seqedit=false;p_id=P3254;gene_id=YML049C;tss_id=TSS6829;nbOverlaps=0;ID=YML049C;Name=RSE1
XIII	S-MART	transcript	173139	174074	.	+	.	seqedit=false;p_id=P4791;gene_id=YML050W;tss_id=TSS1990;nbOverlaps=0;ID=YML050W;Name=AIM32
VIII	S-MART	transcript	190543	192618	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:30:16654:19151#0--HWUSI-EAS1656_0009_FC:3:83:3527:3491#0--HWUSI-EAS1656_0009;p_id=P2562;gene_id=YHR042W;tss_id=TSS4091;nbOverlaps=395;ID=YHR042W;Name=NCP1
XIII	S-MART	transcript	171594	172901	.	+	.	seqedit=false;p_id=P2988;gene_id=YML051W;tss_id=TSS2611;nbOverlaps=0;ID=YML051W;Name=GAL80
XIII	S-MART	transcript	170402	171310	.	+	.	seqedit=false;p_id=P1113;gene_id=YML052W;tss_id=TSS813;nbOverlaps=0;ID=YML052W;Name=SUR7
VII	S-MART	transcript	796092	796745	.	+	.	seqedit=false;p_id=P1166;gene_id=YGR153W;tss_id=TSS4440;nbOverlaps=0;ID=YGR153W;Name=YGR153W
XIII	S-MART	transcript	165533	167308	.	-	.	seqedit=false;p_id=P6100;gene_id=YML054C;tss_id=TSS5346;nbOverlaps=0;ID=YML054C;Name=CYB2
XIII	S-MART	transcript	169116	169754	.	-	.	seqedit=false;p_id=P5939;gene_id=YML053C;tss_id=TSS2499;nbOverlaps=0;ID=YML053C;Name=YML053C
XIII	S-MART	transcript	167623	167781	.	-	.	seqedit=false;p_id=P496;gene_id=YML054C-A;tss_id=TSS3837;nbOverlaps=0;ID=YML054C-A;Name=YML054C-A
X	S-MART	transcript	531828	531898	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:112:5447:7527#0--HWUSI-EAS1656_0009_FC:3:72:2203:17529#0--HWUSI-EAS1656_0009;gene_id=tG(GCC)J2;tss_id=TSS271;nbOverlaps=106;ID=tG(GCC)J2;Name=tG(GCC)J2
XIII	S-MART	transcript	164790	165326	.	+	.	seqedit=false;p_id=P4585;gene_id=YML055W;tss_id=TSS1797;nbOverlaps=0;ID=YML055W;Name=SPC2
VII	S-MART	transcript	720265	720654	.	-	.	seqedit=false;p_id=P6367;gene_id=YGR114C;tss_id=TSS3462;nbOverlaps=0;ID=YGR114C;Name=YGR114C
VII	S-MART	transcript	720372	721151	.	-	.	seqedit=false;p_id=P4228;gene_id=YGR115C;tss_id=TSS2821;nbOverlaps=0;ID=YGR115C;Name=YGR115C
VII	S-MART	transcript	798543	800066	.	+	.	seqedit=false;p_id=P3202;gene_id=YGR155W;tss_id=TSS2975;nbOverlaps=0;ID=YGR155W;Name=CYS4
VII	S-MART	transcript	726974	727730	.	+	.	seqedit=false;p_id=P6071;gene_id=YGR118W;tss_id=TSS5392;nbOverlaps=0;ID=YGR118W;Name=RPS23A
VII	S-MART	exon	726974	727038	.	+	.	ID=YGR118W-exon1;Name=RPS23A-exon1;Parent=YGR118W
VII	S-MART	exon	727358	727730	.	+	.	ID=YGR118W-exon2;Name=RPS23A-exon2;Parent=YGR118W
VII	S-MART	transcript	725049	726479	.	-	.	seqedit=false;p_id=P3009;gene_id=YGR117C;tss_id=TSS1254;nbOverlaps=0;ID=YGR117C;Name=YGR117C
XIII	S-MART	transcript	160180	161994	.	+	.	seqedit=false;p_id=P2396;gene_id=YML057W;tss_id=TSS6584;nbOverlaps=0;ID=YML057W;Name=CMP2
XIII	S-MART	transcript	159383	159697	.	+	.	seqedit=false;p_id=P156;gene_id=YML058W;tss_id=TSS5138;nbOverlaps=0;ID=YML058W;Name=SML1
XIII	S-MART	transcript	158760	158966	.	+	.	seqedit=false;p_id=P3205;gene_id=YML058W-A;tss_id=TSS6958;nbOverlaps=0;ID=YML058W-A;Name=HUG1
XIII	S-MART	transcript	153219	158258	.	-	.	seqedit=false;p_id=P5547;gene_id=YML059C;tss_id=TSS1552;nbOverlaps=0;ID=YML059C;Name=NTE1
VII	S-MART	transcript	800546	801823	.	+	.	seqedit=false;p_id=P6523;gene_id=YGR156W;tss_id=TSS7042;nbOverlaps=0;ID=YGR156W;Name=PTI1
XIII	S-MART	transcript	151871	153001	.	+	.	seqedit=false;p_id=P116;gene_id=YML060W;tss_id=TSS1157;nbOverlaps=0;ID=YML060W;Name=OGG1
XIII	S-MART	transcript	148953	151532	.	-	.	seqedit=false;p_id=P1048;gene_id=YML061C;tss_id=TSS5956;nbOverlaps=0;ID=YML061C;Name=PIF1
XIII	S-MART	transcript	147505	148683	.	-	.	seqedit=false;p_id=P3241;gene_id=YML062C;tss_id=TSS496;nbOverlaps=0;ID=YML062C;Name=MFT1
XVI	S-MART	transcript	917077	919041	.	-	.	seqedit=false;p_id=P2972;gene_id=YPR190C;tss_id=TSS76;nbOverlaps=0;ID=YPR190C;Name=RPC82
XIV	S-MART	transcript	342516	343340	.	+	.	seqedit=false;p_id=P2613;gene_id=YNL155W;tss_id=TSS6112;nbOverlaps=0;ID=YNL155W;Name=YNL155W
XIII	S-MART	transcript	146482	147249	.	+	.	seqedit=false;p_id=P2707;gene_id=YML063W;tss_id=TSS1711;nbOverlaps=0;ID=YML063W;Name=RPS1B
XIII	S-MART	transcript	145139	145876	.	-	.	seqedit=false;p_id=P1285;gene_id=YML064C;tss_id=TSS1906;nbOverlaps=0;ID=YML064C;Name=TEM1
XIII	S-MART	transcript	142210	144954	.	+	.	seqedit=false;p_id=P481;gene_id=YML065W;tss_id=TSS6617;nbOverlaps=0;ID=YML065W;Name=ORC1
VII	S-MART	transcript	802440	805049	.	+	.	seqedit=false;p_id=P495;gene_id=YGR157W;tss_id=TSS5950;nbOverlaps=0;ID=YGR157W;Name=CHO2
XIII	S-MART	transcript	140424	141533	.	-	.	seqedit=false;p_id=P6605;gene_id=YML066C;tss_id=TSS6700;nbOverlaps=0;ID=YML066C;Name=SMA2
XIII	S-MART	transcript	139063	140214	.	-	.	seqedit=false;p_id=P3746;gene_id=YML067C;tss_id=TSS2475;nbOverlaps=0;ID=YML067C;Name=ERV41
XIII	S-MART	exon	139063	140090	.	-	.	ID=YML067C-exon1;Name=ERV41-exon1;Parent=YML067C
XIII	S-MART	exon	140184	140214	.	-	.	ID=YML067C-exon2;Name=ERV41-exon2;Parent=YML067C
VII	S-MART	transcript	745835	746527	.	+	.	seqedit=false;p_id=P6101;gene_id=YGR126W;tss_id=TSS431;nbOverlaps=0;ID=YGR126W;Name=YGR126W
VII	S-MART	transcript	746798	747736	.	+	.	seqedit=false;p_id=P4939;gene_id=YGR127W;tss_id=TSS780;nbOverlaps=0;ID=YGR127W;Name=YGR127W
XIII	S-MART	transcript	137550	138944	.	+	.	seqedit=false;p_id=P6032;gene_id=YML068W;tss_id=TSS5907;nbOverlaps=0;ID=YML068W;Name=ITT1
XIII	S-MART	transcript	135500	137158	.	+	.	seqedit=false;p_id=P2121;gene_id=YML069W;tss_id=TSS4350;nbOverlaps=0;ID=YML069W;Name=POB3
VII	S-MART	transcript	805269	806021	.	-	.	seqedit=false;p_id=P4802;gene_id=YGR158C;tss_id=TSS1373;nbOverlaps=0;ID=YGR158C;Name=MTR3
VII	S-MART	transcript	751394	753844	.	-	.	seqedit=false;p_id=P382;gene_id=YGR130C;tss_id=TSS2655;nbOverlaps=0;ID=YGR130C;Name=YGR130C
XIII	S-MART	transcript	129749	131572	.	-	.	seqedit=false;p_id=P1106;gene_id=YML071C;tss_id=TSS5413;nbOverlaps=0;ID=YML071C;Name=COG8
XIII	S-MART	transcript	124730	129367	.	-	.	seqedit=false;p_id=P1210;gene_id=YML072C;tss_id=TSS2698;nbOverlaps=0;ID=YML072C;Name=TCB3
XII	S-MART	transcript	651117	652439	.	+	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:67:18789:14729#0--HWUSI-EAS1656_0009_FC:3:30:16175:12158#0--HWUSI-EAS1656_00;p_id=P1347;gene_id=YLR256W-A;tss_id=TSS6239;nbOverlaps=22;ID=YLR256W-A;Name=YLR256W-A
XIII	S-MART	transcript	123227	124172	.	-	.	seqedit=false;p_id=P2902;gene_id=YML073C;tss_id=TSS2196;nbOverlaps=0;ID=YML073C;Name=RPL6A
XIII	S-MART	exon	123227	123742	.	-	.	ID=YML073C-exon1;Name=RPL6A-exon1;Parent=YML073C
XIII	S-MART	exon	124158	124172	.	-	.	ID=YML073C-exon2;Name=RPL6A-exon2;Parent=YML073C
VIII	S-MART	transcript	192805	193545	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:32:7849:13665#0--HWUSI-EAS1656_0009_FC:3:32:10572:2225#0--HWUSI-EAS1656_0009;p_id=P3191;gene_id=YHR043C;tss_id=TSS6262;nbOverlaps=106;ID=YHR043C;Name=DOG2
VII	S-MART	transcript	761392	762168	.	+	.	seqedit=false;p_id=P632;gene_id=YGR135W;tss_id=TSS6501;nbOverlaps=0;ID=YGR135W;Name=PRE9
XI	S-MART	transcript	184803	185012	.	-	.	seqedit=false;p_id=P462;gene_id=YKL138C-A;tss_id=TSS4221;nbOverlaps=0;ID=YKL138C-A;Name=HSK3
VII	S-MART	transcript	762428	763153	.	+	.	seqedit=false;p_id=P401;gene_id=YGR136W;tss_id=TSS1520;nbOverlaps=0;ID=YGR136W;Name=LSB1
VII	S-MART	transcript	806412	807656	.	-	.	seqedit=false;p_id=P3227;gene_id=YGR159C;tss_id=TSS268;nbOverlaps=0;ID=YGR159C;Name=NSR1
XIII	S-MART	transcript	120089	121324	.	-	.	seqedit=false;p_id=P1775;gene_id=YML074C;tss_id=TSS3326;nbOverlaps=0;ID=YML074C;Name=FPR3
XIII	S-MART	transcript	115734	118898	.	-	.	seqedit=false;p_id=P1971;gene_id=YML075C;tss_id=TSS4461;nbOverlaps=0;ID=YML075C;Name=HMG1
XIII	S-MART	transcript	112513	115347	.	-	.	seqedit=false;p_id=P2269;gene_id=YML076C;tss_id=TSS1145;nbOverlaps=0;ID=YML076C;Name=WAR1
XIII	S-MART	transcript	111865	112344	.	+	.	seqedit=false;p_id=P148;gene_id=YML077W;tss_id=TSS5053;nbOverlaps=0;ID=YML077W;Name=BET5
VII	S-MART	transcript	770569	771972	.	+	.	seqedit=false;p_id=P1068;gene_id=YGR141W;tss_id=TSS4282;nbOverlaps=0;ID=YGR141W;Name=VPS62
VII	S-MART	transcript	772454	773686	.	+	.	seqedit=false;p_id=P4225;gene_id=YGR142W;tss_id=TSS5979;nbOverlaps=0;ID=YGR142W;Name=BTN2
VII	S-MART	transcript	808629	809420	.	-	.	seqedit=false;p_id=P4124;gene_id=YGR161C;tss_id=TSS2974;nbOverlaps=0;ID=YGR161C;Name=RTS3
XIII	S-MART	transcript	110247	110852	.	+	.	seqedit=false;p_id=P1698;gene_id=YML079W;tss_id=TSS4321;nbOverlaps=0;ID=YML079W;Name=YML079W
XIII	S-MART	transcript	103983	104162	.	-	.	seqedit=false;p_id=P1420;gene_id=YML081C-A;tss_id=TSS4576;nbOverlaps=0;ID=YML081C-A;Name=ATP18
XIII	S-MART	transcript	104777	108532	.	+	.	seqedit=false;p_id=P5656;gene_id=YML081W;tss_id=TSS5629;nbOverlaps=0;ID=YML081W;Name=TDA9
III	S-MART	transcript	186489	190169	.	+	.	seqedit=false;p_id=P5337;gene_id=YCR033W;tss_id=TSS5862;nbOverlaps=0;ID=YCR033W;Name=SNT1
XIII	S-MART	transcript	97941	99400	.	-	.	seqedit=false;p_id=P3499;gene_id=YML085C;tss_id=TSS4259;nbOverlaps=0;ID=YML085C;Name=TUB1
XIII	S-MART	exon	97941	99259	.	-	.	ID=YML085C-exon1;Name=TUB1-exon1;Parent=YML085C
XIII	S-MART	exon	99376	99400	.	-	.	ID=YML085C-exon2;Name=TUB1-exon2;Parent=YML085C
XIII	S-MART	transcript	101862	103811	.	+	.	seqedit=false;p_id=P2203;gene_id=YML082W;tss_id=TSS1709;nbOverlaps=0;ID=YML082W;Name=YML082W
XIII	S-MART	transcript	99794	101050	.	-	.	seqedit=false;p_id=P5692;gene_id=YML083C;tss_id=TSS948;nbOverlaps=0;ID=YML083C;Name=YML083C
XIII	S-MART	transcript	99489	99797	.	+	.	seqedit=false;p_id=P3429;gene_id=YML084W;tss_id=TSS5738;nbOverlaps=0;ID=YML084W;Name=YML084W
VII	S-MART	transcript	790459	793053	.	-	.	seqedit=false;p_id=P4647;gene_id=YGR150C;tss_id=TSS3036;nbOverlaps=0;ID=YGR150C;Name=CCM1
VII	S-MART	transcript	789031	790329	.	+	.	seqedit=false;p_id=P267;gene_id=YGR149W;tss_id=TSS6312;nbOverlaps=0;ID=YGR149W;Name=YGR149W
XVI	S-MART	transcript	919381	920487	.	+	.	seqedit=false;p_id=P2858;gene_id=YPR191W;tss_id=TSS1183;nbOverlaps=0;ID=YPR191W;Name=QCR2
XIV	S-MART	transcript	340352	340858	.	+	.	seqedit=false;p_id=P3270;gene_id=YNL157W;tss_id=TSS5800;nbOverlaps=0;ID=YNL157W;Name=IGO1
XIII	S-MART	transcript	95791	97371	.	-	.	seqedit=false;p_id=P392;gene_id=YML086C;tss_id=TSS3973;nbOverlaps=0;ID=YML086C;Name=ALO1
XIII	S-MART	transcript	94431	95369	.	-	.	seqedit=false;p_id=P6540;gene_id=YML087C;tss_id=TSS643;nbOverlaps=0;ID=YML087C;Name=AIM33
XIII	S-MART	transcript	92235	94241	.	+	.	seqedit=false;p_id=P4927;gene_id=YML088W;tss_id=TSS3372;nbOverlaps=0;ID=YML088W;Name=UFO1
XIII	S-MART	transcript	87123	90731	.	-	.	seqedit=false;p_id=P927;gene_id=YML091C;tss_id=TSS632;nbOverlaps=0;ID=YML091C;Name=RPM2
XIII	S-MART	transcript	91041	91409	.	-	.	seqedit=false;p_id=P4844;gene_id=YML089C;tss_id=TSS911;nbOverlaps=0;ID=YML089C;Name=YML089C
XIII	S-MART	transcript	90744	91130	.	+	.	seqedit=false;p_id=P849;gene_id=YML090W;tss_id=TSS5516;nbOverlaps=0;ID=YML090W;Name=YML090W
XIII	S-MART	transcript	85987	86739	.	-	.	seqedit=false;p_id=P5314;gene_id=YML092C;tss_id=TSS3012;nbOverlaps=0;ID=YML092C;Name=PRE8
XIII	S-MART	transcript	83090	85789	.	+	.	seqedit=false;p_id=P3589;gene_id=YML093W;tss_id=TSS794;nbOverlaps=0;ID=YML093W;Name=UTP14
XIII	S-MART	transcript	82219	82620	.	-	.	seqedit=false;p_id=P3718;gene_id=YML094C-A;tss_id=TSS4585;nbOverlaps=0;ID=YML094C-A;Name=YML094C-A
VII	S-MART	transcript	817747	823015	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:49:2195:2756#0--HWUSI-EAS1656_0009_FC:3:12:10443:12335#0--HWUSI-EAS1656_0009;p_id=P3114;gene_id=YGR161C-D;tss_id=TSS2033;nbOverlaps=431;ID=YGR161C-D;Name=YGR161C-D
VII	S-MART	exon	817747	821709	.	-	.	ID=YGR161C-D-exon1;Name=YGR161C-D-exon1;Parent=YGR161C-D
VII	S-MART	exon	821711	823015	.	-	.	ID=YGR161C-D-exon2;Name=YGR161C-D-exon2;Parent=YGR161C-D
XIII	S-MART	transcript	82275	82849	.	+	.	seqedit=false;p_id=P1742;gene_id=YML094W;tss_id=TSS1864;nbOverlaps=0;ID=YML094W;Name=GIM5
XIII	S-MART	exon	82275	82290	.	+	.	ID=YML094W-exon1;Name=GIM5-exon1;Parent=YML094W
XIII	S-MART	exon	82374	82849	.	+	.	ID=YML094W-exon2;Name=GIM5-exon2;Parent=YML094W
VII	S-MART	transcript	807073	807684	.	+	.	seqedit=false;p_id=P5320;gene_id=YGR160W;tss_id=TSS4839;nbOverlaps=0;ID=YGR160W;Name=YGR160W
VII	S-MART	transcript	821693	823015	.	-	.	seqedit=false;overlapsWith=HWUSI-EAS1656_0009_FC:3:69:10212:8264#0--HWUSI-EAS1656_0009_FC:3:26:11389:20176#0--HWUSI-EAS1656_000;p_id=P2676;gene_id=YGR161C-C;tss_id=TSS2033;nbOverlaps=12;ID=YGR161C-C;Name=YGR161C-C
XII	S-MART	transcript	660716	662833	.	+	.	seqedit=false;p_id=P1153;gene_id=YLR258W;tss_id=TSS609;nbOverlaps=0;ID=YLR258W;Name=GSY2
XIII	S-MART	transcript	81481	82113	.	-	.	seqedit=false;p_id=P6599;gene_id=YML095C;tss_id=TSS4095;nbOverlaps=0;ID=YML095C;Name=RAD10