<tool id="strictlyIncludeGff" name="strictly include Gff">
  <description>Prints the elements which are strictly included in the template.</description>
  <command interpreter="perl"> strictlyIncludeGff.pl -i $inputFile -t $template > $outputFile  
  </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="gff"/>
    <param name="template" type="data" label="template File" format="gff"/>
  </inputs>

  <outputs>
    <data format="gff3" name="outputFile" label="[strictlyIncludeGff] Output File"/>
  </outputs>

  <help>
	command example: perl strictlyIncludeGff.pl -i toSelect.gff3 -t template.gff -o result.gff3
  </help>
</tool>