Mercurial > repos > yufei-luo > s_mart

directory /SMART/Java/Python/ @ 25:7809e72960fe

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[up] drwxr-xr-x
dir. Cpp/ drwxr-xr-x
dir. TestFiles/ drwxr-xr-x
dir. cleaning/ drwxr-xr-x
dir. misc/ drwxr-xr-x
dir. mySql/ drwxr-xr-x
dir. ncList/ drwxr-xr-x
dir. structure/ drwxr-xr-x
dir. test/ drwxr-xr-x
dir. toolLauncher/ drwxr-xr-x
file .RData 1187 -rw-r--r--
file .Rhistory 28 -rw-r--r--
file .gitignore 24 -rw-r--r--
file CleanTranscriptFile.py 3579 -rw-r--r--
file ClusterizeByTags.py 8613 -rwxr-xr-x
file CollapseReads.py 8328 -rwxr-xr-x
file CombineTags.py 6255 -rwxr-xr-x
file CompareOverlapping.py 22479 -rwxr-xr-x
file CompareOverlapping.pyc 21975 -rw-r--r--
file CompareOverlappingSmallQuery.py 12087 -rw-r--r--
file CompareOverlappingSmallQuery.pyc 12496 -rw-r--r--
file CompareOverlappingSmallRef.py 11807 -rw-r--r--
file CompareOverlappingSmallRef.pyc 11879 -rw-r--r--
file ComputeCoverage.py 6596 -rwxr-xr-x
file CountLoci.py 12203 -rw-r--r--
file CountReadGCPercent.py 4209 -rwxr-xr-x
file FindOverlapsOptim.py 14406 -rwxr-xr-x
file GetDifferentialExpression.py 22133 -rwxr-xr-x
file GetDistribution.py 16037 -rwxr-xr-x
file GetFlanking.py 11538 -rwxr-xr-x
file GetIntersection.py 6977 -rw-r--r--
file GetRandomSubset.py 4767 -rwxr-xr-x
file GetReadDistribution.py 15322 -rw-r--r--
file GetReadSizes.py 12925 -rwxr-xr-x
file GetUpDownStream.py 7658 -rwxr-xr-x
file GetUpDownStream.pyc 6755 -rw-r--r--
file RestrictFromCoverage.py 12279 -rwxr-xr-x
file SelectByTag.py 6664 -rwxr-xr-x
file WrappGetDistribution.py 5922 -rwxr-xr-x
file WrappGetReadDistribution.py 2735 -rwxr-xr-x
file WrappPlotCoverage.py 5798 -rwxr-xr-x
file WrappPlotRepartition.py 3508 -rwxr-xr-x
file __init__.py 0 -rwxr-xr-x
file __init__.pyc 168 -rw-r--r--
file adaptorStripper.py 6034 -rwxr-xr-x
file changeGffFeatures.sh 39 -rwxr-xr-x
file changeTagName.py 4802 -rwxr-xr-x
file cleanGff.py 7652 -rwxr-xr-x
file cleanGff.pyc 8135 -rw-r--r--
file clusterize.py 8272 -rwxr-xr-x
file clusterizeBySlidingWindows.py 17865 -rwxr-xr-x
file compareOverlapping.py 10674 -rwxr-xr-x
file convertTranscriptFile.py 6205 -rwxr-xr-x
file coordinatesToSequence.py 3479 -rwxr-xr-x
file findTss.py 4892 -rwxr-xr-x
file fold.py 4461 -rwxr-xr-x
file genes.gtf 5412395 -rw-r--r--
file getDifference.py 7937 -rwxr-xr-x
file getDistance.py 13319 -rwxr-xr-x
file getDistribution.py 16586 -rwxr-xr-x
file getElement.py 5640 -rwxr-xr-x
file getExons.py 6277 -rwxr-xr-x
file getInfoPerCoverage.py 10120 -rwxr-xr-x
file getIntrons.py 4494 -rwxr-xr-x
file getLetterDistribution.py 6905 -rwxr-xr-x
file getNb.py 5701 -rwxr-xr-x
file getRandomRegions.py 11908 -rwxr-xr-x
file getRandomRegions.pyc 12044 -rw-r--r--
file getReadDistribution.py 6002 -rwxr-xr-x
file getSequence.py 3080 -rwxr-xr-x
file getSizes.py 8402 -rwxr-xr-x
file getWigData.py 4274 -rwxr-xr-x
file getWigDistance.py 6249 -rwxr-xr-x
file getWigProfile.py 8468 -rwxr-xr-x
file mapperAnalyzer.py 24176 -rwxr-xr-x
file mappingToCoordinates.py 4645 -rwxr-xr-x
file mergeSlidingWindowsClusters.py 7282 -rwxr-xr-x
file mergeTranscriptLists.py 9214 -rwxr-xr-x
file modifyFasta.py 3591 -rwxr-xr-x
file modifyGenomicCoordinates.py 4317 -rwxr-xr-x
file modifySequenceList.py 3899 -rwxr-xr-x
file plot.py 10158 -rwxr-xr-x
file plotCoverage.py 22336 -rwxr-xr-x
file plotGenomeCoverage.py 5865 -rwxr-xr-x
file plotRepartition.py 7115 -rwxr-xr-x
file plotTranscriptList.py 11166 -rwxr-xr-x
file qualToFastq.py 4156 -rwxr-xr-x
file removeAllTmpTables.py 2846 -rwxr-xr-x
file removeEmptySequences.py 6599 -rwxr-xr-x
file removeExonLines.sh 29 -rwxr-xr-x
file repetGffConverter.py 3724 -rwxr-xr-x
file restrictFromNucleotides.py 4213 -rwxr-xr-x
file restrictFromSize.py 5171 -rwxr-xr-x
file restrictSequenceList.py 5274 -rwxr-xr-x
file restrictTranscriptList.py 4735 -rwxr-xr-x
file runRandomJobs.py 2804 -rwxr-xr-x
file script.Rout 68 -rw-r--r--
file selectByNbOccurrences.py 5036 -rwxr-xr-x
file sequenceListSplitter.py 3914 -rwxr-xr-x
file splitByTag.py 3918 -rwxr-xr-x
file splitMultiFasta.py 2972 -rwxr-xr-x
file test3.gff3 588 -rw-r--r--
file testInstall.py 3654 -rwxr-xr-x
file testPC_unnamed transcript_coverage.png 36917 -rw-r--r--
file testPC_unnamed transcript_overlap.png 27855 -rw-r--r--
file tmpFile26845.R 687 -rw-r--r--
file tmpFile26845.Rout 797 -rw-r--r--
file tmpFile26845.dat 613197 -rw-r--r--
file trimAdaptor.py 5706 -rwxr-xr-x
file trimSequence.py 4962 -rwxr-xr-x
file trimSequences.py 8572 -rwxr-xr-x
file txtToFasta.py 2922 -rwxr-xr-x
file updateQual.py 3986 -rwxr-xr-x
file wigExploder.py 4234 -rwxr-xr-x
file wrongFastqToQual.py 3912 -rwxr-xr-x