Mercurial > repos > yufei-luo > s_mart
view SMART/Java/Python/test/Test_F_coordinatesToSequence.py @ 25:7809e72960fe
Deleted selected files
author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:29:14 -0400 |
parents | 94ab73e8a190 |
children |
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import unittest import os from commons.core.utils.FileUtils import FileUtils TESTFILES_PATH = os.environ['REPET_PATH'] + '/SMART/Java/Python/TestFiles' class Test_F_coordinatesToSequence(unittest.TestCase): def test_run(self): cmd = "python ../coordinatesToSequence.py -i %s/testC2S.gff3 -f gff3 -s %s/testC2S.fa -o testOut.fa -v 10 " % (TESTFILES_PATH, TESTFILES_PATH) os.system(cmd) obs = 'testOut.fa' exp = 'expOut.fa' self._writeExpOut(exp) self.assertTrue(FileUtils.isRessourceExists(obs)) self.assertTrue(FileUtils.are2FilesIdentical(obs, exp)) os.remove(obs) os.remove(exp) def _writeExpOut(self, outputFileName): f = open(outputFileName, "w") f.write(">region0\n") f.write("CAACATTAGC\n") f.write(">region1\n") f.write("TTAGCCGGCC\n") f.write(">region2\n") f.write("GGCCGGCTAA\n") f.close() if __name__ == "__main__": unittest.main()